RSAT - retrieve variation sequence

Given a set of polymorphic variations, dbSNP IDs or varBed variants file, retrieve the corresponding variants and their flanking sequences. Optionally, the user can input a set of genomic coordinates in bed format, and the tool will retrieve dbSNP annotated variants within them, together with their flanking sequences. The output of this tool can then be used in variation-scan to assess the impact of genetic variants on trasncription factor binding sites.

Locally installed variants were directly downloaded from ensembl, specific versions for each installed genome can be consulted here, updates can be done on demand.

Conceptionc, implementationi and testingt: Jacques van Heldencit , Alejandra Medina-Riveracit , Walter Santanacit , Jeremy Delerceci

Input a set of variants in varBed format 

    Upload variants or regions

Input format 

[List of organisms] not seeing your favorite organism in the list ? Contact us to have it installed

Length of flanking sequence on each side of the variant 
      [Sample Output] MANUAL MAIL

AMR and WS are supported by a PAPIIT-UNAM (IA206517) grant.