; oligo-analysis  -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/genome/Homo_sapiens_GRCh38_start_codons.wc -o $RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/genome/Homo_sapiens_GRCh38_start_codon_frequencies.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Slow counting mode           
; Oligomer length              	3
; Input file                   	$RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/genome/Homo_sapiens_GRCh38_start_codons.wc
; Input format                 	wc
; Output file                  	$RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/genome/Homo_sapiens_GRCh38_start_codon_frequencies.tab
; Count overlapping matches
; Counted on a single strand
; Background model             	Bernoulli
; Background estimation method 	
; Sequence type                	DNA
; Nb of sequences              	93892
; Sum of sequence lengths      	281676
; discarded residues           		 (other letters than ACGT)
; discarded occurrences        		 (contain discarded residues)
; nb possible positions        	93892
; total oligo occurrences      	93892
; alphabet size                	4
; nb possible oligomers        	64
; oligomers tested for significance	0
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	obs_freq       	observed relative frequency
;	4	occ            	observed occurrences
#seq	id	obs_freq	occ
atg	atg	0.4861010522728	45641
ctg	ctg	0.0145060282026	1362
ggg	ggg	0.0142184637669	1335
ggc	ggc	0.0141758616283	1331
gcc	gcc	0.0137178886380	1288
gag	gag	0.0128977974694	1211
ccc	ccc	0.0127167383803	1194
cag	cag	0.0125463298258	1178
agg	agg	0.0123226685980	1157
gga	gga	0.0119925020236	1126
tgg	tgg	0.0115664806373	1086
gct	gct	0.0111298087164	1045
cct	cct	0.0110339539045	1036
gaa	gaa	0.0105759809142	993
ctc	ctc	0.0104268734290	979
aga	aga	0.0102990670132	967
ttt	ttt	0.0101180079240	950
agc	agc	0.0101073573893	949
cca	cca	0.0099262983002	932
gtg	gtg	0.0099156477655	931
aaa	aaa	0.0098943466962	929
aag	aag	0.0097026370724	911
cgg	cgg	0.0096813360031	909
tgc	tgc	0.0095854811912	900
tga	tga	0.0095109274486	893
gcg	gcg	0.0093085672901	874
tcc	tcc	0.0092766156861	871
gca	gca	0.0091168576663	856
tct	tct	0.0089144975078	837
ctt	ctt	0.0085736803988	805
ccg	ccg	0.0085630298641	804
ttc	ttc	0.0078494440421	737
ggt	ggt	0.0077748902995	730
tgt	tgt	0.0077003365569	723
caa	caa	0.0076364333490	717
cgc	cgc	0.0076257828143	716
acc	acc	0.0071678098241	673
cac	cac	0.0070932560815	666
tca	tca	0.0069974012695	657
aca	aca	0.0069761002002	655
agt	agt	0.0069015464576	648
ttg	ttg	0.0068163421804	640
gat	gat	0.0065926809526	619
gtc	gtc	0.0064861756060	609
gac	gac	0.0063903207941	600
att	att	0.0063051165168	592
act	act	0.0062412133089	586
cat	cat	0.0059642994078	560
gtt	gtt	0.0056873855068	534
aat	aat	0.0056767349721	533
aac	aac	0.0053359178631	501
atc	atc	0.0052720146551	495
gta	gta	0.0051655093086	485
tta	tta	0.0048033911302	451
tat	tat	0.0045584288331	428
taa	taa	0.0045477782985	427
cta	cta	0.0041004558429	385
cga	cga	0.0037170365952	349
tag	tag	0.0037170365952	349
ata	ata	0.0035572785754	334
cgt	cgt	0.0033336173476	313
tac	tac	0.0032910152090	309
tcg	tcg	0.0031632087931	297
acg	acg	0.0031312571891	294
; Host name	n46
; Job started	2017-04-15.090222
; Job done	2017-04-15.090224
; Seconds	1.02
;	user	1.02
;	system	0.01
;	cuser	0
;	csystem	0