-- dump date 20240507_090032 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 796027000001 SEQ_END SEQ_END NC_031672.1 5930846 5930846 DR NC_031672.1; contig end 5930846..5930846 Sugiyamaella lignohabitans 796027000002 SEQ_END SEQ_END NC_031674.1 4956242 4956242 DR NC_031674.1; contig end 4956242..4956242 Sugiyamaella lignohabitans 796027000003 SEQ_END SEQ_END NC_031671.1 2773601 2773601 DR NC_031671.1; contig end 2773601..2773601 Sugiyamaella lignohabitans 796027000004 SEQ_END SEQ_END NC_031673.1 2277569 2277569 DR NC_031673.1; contig end 2277569..2277569 Sugiyamaella lignohabitans AWJ20_1 CDS ITR2 NC_031672.1 3059 4897 D Myo-inositol transporter; member of the sugar transporter superfamily; expressed constitutively; ITR2 has a paralog, ITR1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 2040626]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16233524]; GO_function: GO:0005365 - myo-inositol transmembrane transporter activity [Evidence IMP,ISS] [PMID 2040626]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015798 - myo-inositol transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; myo-inositol transporter ITR2 3059..4897 Sugiyamaella lignohabitans 30032752 AWJ20_2 CDS DUR3 NC_031672.1 4990 6651 R Plasma membrane transporter for both urea and polyamines; expression is highly sensitive to nitrogen catabolite repression and induced by allophanate, the last intermediate of the allantoin degradative pathway; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17218313]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 8335627]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IDA,IMP] [PMID 17218313]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 17218313]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0015204 - urea transmembrane transporter activity [Evidence IMP,ISS] [PMID 8335627]; GO_process: GO:0015847 - putrescine transport [Evidence IDA,IMP] [PMID 17218313]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 17218313]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IEP] [PMID 8335627]; GO_process: GO:0015840 - urea transport [Evidence IMP,ISS] [PMID 8335627]; Dur3p complement(4990..6651) Sugiyamaella lignohabitans 30033862 AWJ20_3 CDS AWJ20_3 NC_031672.1 8242 9495 D uncharacterized protein 8242..9495 Sugiyamaella lignohabitans 30034972 AWJ20_4 CDS RNA15 NC_031672.1 9623 10366 R Component of the cleavage and polyadenylation factor I (CF I); CF 1, composed of the CF 1A complex (Rna14p, Rna15p, Clp1p, Pcf11p) and Hrp1, is involved in cleavage and polyadenylation of mRNA 3' ends; interacts with the A-rich polyadenylation signal in complex with Rna14p and Hrp1p; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; required for gene looping; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 11344258]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 17684230]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 15215336]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Rna15p complement(9623..10366) Sugiyamaella lignohabitans 30036082 AWJ20_5 CDS DST1 NC_031672.1 11423 11992 D General transcription elongation factor TFIIS; enables RNA polymerase II to read through blocks to elongation by stimulating cleavage of nascent transcripts stalled at transcription arrest sites; maintains RNAPII elongation activity on ribosomal protein genes during conditions of transcriptional stress; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9334234]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 6985606]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 8876173]; GO_function: GO:0001012 - RNA polymerase II regulatory region DNA binding [Evidence IDA] [PMID 15767671]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IMP] [PMID 15767671]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 12692127]; GO_process: GO:0006379 - mRNA cleavage [Evidence IMP] [PMID 9712888]; GO_process: GO:0001193 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 14531857]; GO_process: GO:0001193 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 16492753]; GO_process: GO:0001193 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 17535246]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA,IMP] [PMID 17913884]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 8876173]; GO_process: GO:0032784 - regulation of DNA-templated transcription, elongation [Evidence IEA]; GO_process: GO:0031440 - regulation of mRNA 3'-end processing [Evidence IGI,IMP] [PMID 15531585]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 18628399]; GO_process: GO:0031564 - transcription antitermination [Evidence IDA] [PMID 8636112]; GO_process: GO:0031564 - transcription antitermination [Evidence IDA] [PMID 9037112]; GO_process: GO:0031564 - transcription antitermination [Evidence IDA] [PMID 9169440]; GO_process: GO:0006362 - transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 7002153]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 7002153]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 7020755]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 8288647]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 9334234]; GO_process: GO:0006383 - transcription from RNA polymerase III promoter [Evidence IDA] [PMID 18628399]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IMP] [PMID 15767671]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA,IGI,IMP] [PMID 17901206]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Dst1p 11423..11992 Sugiyamaella lignohabitans 30037192 AWJ20_7 CDS PEX14 NC_031672.1 16235 17284 R Central component of the peroxisomal protein import machinery; peroxisomal membrane peroxin; interacts with both PTS1 (Pex5p) and PTS2 (Pex7p), peroxisomal matrix protein signal recognition factors and membrane receptor Pex13p; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA,IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 9094717]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 9312008]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 9094717]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 9312008]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IEA]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IMP,IPI] [PMID 16107331]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 9094717]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 9312008]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pex14p complement(16235..17284) Sugiyamaella lignohabitans 30037760 AWJ20_8 CDS lys7 NC_031672.1 19673 20566 D alpha-aminoadipate reductase phosphopantetheinyl transferase Lys7 19673..20566 Sugiyamaella lignohabitans 30037871 AWJ20_9 CDS AWJ20_9 NC_031672.1 21028 22089 D uncharacterized protein 21028..22089 Sugiyamaella lignohabitans 30037982 AWJ20_10 CDS PRX1 NC_031672.1 22567 23658 R Mitochondrial peroxiredoxin with thioredoxin peroxidase activity; has a role in reduction of hydroperoxides; reactivation requires Trr2p and glutathione; induced during respiratory growth and oxidative stress; phosphorylated; protein abundance increases in response to DNA replication stress; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,ISS] [PMID 10681558]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10821871]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA,IEA]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP,ISS] [PMID 10681558]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA] [PMID 10821871]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 10681558]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0046686 - response to cadmium ion [Evidence IMP] [PMID 19332553]; Prx1p complement(join(22567..23382,23440..23658)) Sugiyamaella lignohabitans 30032753 AWJ20_11 CDS AWJ20_11 NC_031672.1 23784 24494 R Fungal Genetics Stock Center 12450; Fungal Genetics Stock Center 12449; chitin synthase 6 complement(23784..24494) Sugiyamaella lignohabitans 30032864 AWJ20_12 CDS CHS3 NC_031672.1 24844 28581 R Chitin synthase III; catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan; contains overlapping di-leucine and di-acidic signals that mediate, respectively, intracellular trafficking by AP-1 and trafficking to plasma membrane by exomer complex; requires AP-3 complex for its intracellular retention; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15470103]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0045009 - chitosome [Evidence IDA] [PMID 8970154]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9008706]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9008706]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 15755916]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IMP] [PMID 9760183]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 1293886]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence TAS] [PMID 7565410]; chitin synthase CHS3 complement(24844..28581) Sugiyamaella lignohabitans 30032975 AWJ20_13 CDS CHS3 NC_031672.1 32456 37627 D Chitin synthase III; catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan; contains overlapping di-leucine and di-acidic signals that mediate, respectively, intracellular trafficking by AP-1 and trafficking to plasma membrane by exomer complex; requires AP-3 complex for its intracellular retention; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15470103]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0045009 - chitosome [Evidence IDA] [PMID 8970154]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9008706]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9008706]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 15755916]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IMP] [PMID 9760183]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 1293886]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence TAS] [PMID 7565410]; chitin synthase CHS3 32456..37627 Sugiyamaella lignohabitans 30033086 AWJ20_14 CDS RPN1 NC_031672.1 37767 40277 R Non-ATPase base subunit of the 19S RP of the 26S proteasome; may participate in the recognition of several ligands of the proteasome; contains a leucine-rich repeat (LRR) domain, a site for protein-protein interactions; RP is the acronym for regulatory particle; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15210724]; GO_component: GO:0000502 - proteasome complex [Evidence IEA,IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence TAS] [PMID 8982460]; GO_function: GO:0004175 - endopeptidase activity [Evidence TAS] [PMID 9697412]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 12198498]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 12200120]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0042176 - regulation of protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 8982460]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 9697412]; proteasome regulatory particle base subunit RPN1 complement(37767..40277) Sugiyamaella lignohabitans 30033197 AWJ20_15 CDS AWJ20_15 NC_031672.1 40500 40793 R Fungal Genetics Stock Center 13879; 26S proteasome regulatory subunit rpn1 complement(40500..40793) Sugiyamaella lignohabitans 30033308 AWJ20_16 CDS DAP2 NC_031672.1 42237 44834 R Dipeptidyl aminopeptidase; synthesized as a glycosylated precursor; localizes to the vacuolar membrane; similar to Ste13p; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 2647766]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0008239 - dipeptidyl-peptidase activity [Evidence IDA] [PMID 2647766]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA,IEA]; GO_process: GO:0016485 - protein processing [Evidence ISS] [PMID 3305478]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Dap2p complement(42237..44834) Sugiyamaella lignohabitans 30033419 AWJ20_17 CDS SLT2 NC_031672.1 45313 46773 R Serine/threonine MAP kinase; involved in regulating maintenance of cell wall integrity, cell cycle progression, and nuclear mRNA retention in heat shock; required for mitophagy and pexophagy; affects recruitment of mitochondria to phagophore assembly site (PAS); plays a role in adaptive response of cells to cold; regulated by the PKC1-mediated signaling pathway; SLT2 has a paralog, KDX1, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12361575]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 23924898]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 23924898]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12361575]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23924898]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence ISS] [PMID 8386319]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 20823268]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 24554767]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0000165 - MAPK cascade [Evidence IEA,IEA]; GO_process: GO:0030969 - UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 18971375]; GO_process: GO:0000917 - barrier septum assembly [Evidence IGI] [PMID 19633265]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IDA,IMP] [PMID 16380504]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IGI] [PMID 16524906]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20385774]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 14703512]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 20219973]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 17302939]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 8386319]; GO_process: GO:0042990 - regulation of transcription factor import into nucleus [Evidence IMP] [PMID 20219973]; GO_process: GO:0001101 - response to acid [Evidence IMP] [PMID 16087742]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 8386319]; mitogen-activated serine/threonine-protein kinase SLT2 complement(45313..46773) Sugiyamaella lignohabitans 30033530 AWJ20_18 CDS RPB8 NC_031672.1 49037 49366 D RNA polymerase subunit ABC14.5; common to RNA polymerases I, II, and III; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0001055 - RNA polymerase II activity [Evidence IDA] [PMID 8288647]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IPI] [PMID 11486042]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IPI] [PMID 11486042]; GO_process: GO:0006383 - transcription from RNA polymerase III promoter [Evidence IPI] [PMID 11486042]; GO_process: GO:0006383 - transcription from RNA polymerase III promoter [Evidence IGI] [PMID 9927738]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase core subunit RPB8 49037..49366 Sugiyamaella lignohabitans 30033641 AWJ20_20 CDS YPS3 NC_031672.1 52538 53896 D Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 52538..53896 Sugiyamaella lignohabitans 30033863 AWJ20_22 CDS TPO3 NC_031672.1 55160 56650 D Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; specific for spermine; localizes to the plasma membrane; TPO3 has a paralog, TPO2, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo3p 55160..56650 Sugiyamaella lignohabitans 30034084 AWJ20_23 CDS MRPL25 NC_031672.1 57051 57665 D Mitochondrial ribosomal protein of the large subunit; mutation confers increased replicative lifespan; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 54S ribosomal protein YmL25 57051..57665 Sugiyamaella lignohabitans 30034195 AWJ20_24 CDS PCS60 NC_031672.1 57742 59451 R Oxalyl-CoA synthetase; capable of catalyzing conversion of oxalate to oxalyl-CoA; catalyzes first step in pathway of oxalate degradation that functions to protect yeast from inhibitory effects of oxalate; peroxisomal protein that binds mRNA; localizes to both peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid; similar to E. coli long chain acyl-CoA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 8841414]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8841414]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0050203 - oxalate-CoA ligase activity [Evidence IDA,IMP] [PMID 24291261]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0033611 - oxalate catabolic process [Evidence IDA,IMP] [PMID 24291261]; Pcs60p complement(57742..59451) Sugiyamaella lignohabitans 30034306 AWJ20_25 CDS SMD1 NC_031672.1 60984 61322 R Core Sm protein Sm D1; part of heteroheptameric complex (with Smb1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; relocalizes to the cytosol in response to hypoxia; homolog of human Sm D1; protein abundance increases in response to DNA replication stress; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9012791]; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720285]; GO_component: GO:0000243 - commitment complex [Evidence IPI] [PMID 10072386]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 10072386]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10072386]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 8430095]; Smd1p complement(60984..61322) Sugiyamaella lignohabitans 30034417 AWJ20_26 CDS MET7 NC_031672.1 65268 66761 D Folylpolyglutamate synthetase; catalyzes extension of the glutamate chains of the folate coenzymes, required for methionine synthesis and for maintenance of mitochondrial DNA; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10775416]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10775416]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004326 - tetrahydrofolylpolyglutamate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004326 - tetrahydrofolylpolyglutamate synthase activity [Evidence IDA] [PMID 10775416]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IMP] [PMID 10775416]; GO_process: GO:0046901 - tetrahydrofolylpolyglutamate biosynthetic process [Evidence IEA]; tetrahydrofolate synthase 65268..66761 Sugiyamaella lignohabitans 30034528 AWJ20_27 CDS TDP1 NC_031672.1 66962 68458 R Tyrosyl-DNA phosphodiesterase I; hydrolyzes 3' and 5'-phosphotyrosyl bonds; involved in the repair of DNA lesions created by topoisomerase I and topoisomerase II; mutations in human homolog result in the neurodegenerative disease SCANI; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12206772]; GO_function: GO:0017005 - 3'-tyrosyl-DNA phosphodiesterase activity [Evidence IDA] [PMID 10521354]; GO_function: GO:0070260 - 5'-tyrosyl-DNA phosphodiesterase activity [Evidence IDA] [PMID 16751265]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 10521354]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15135727]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; tyrosyl-DNA phosphodiesterase 1 complement(66962..68458) Sugiyamaella lignohabitans 30034639 AWJ20_28 CDS BOI1 NC_031672.1 71937 74573 D Protein implicated in polar growth; functionally redundant with Boi2p; interacts with bud-emergence protein Bem1p; contains an SH3 (src homology 3) domain and a PH (pleckstrin homology) domain; relocalizes from bud neck to cytoplasm upon DNA replication stress; BOI1 has a paralog, BOI2, that arose from the whole genome duplication; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 12097146]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12097146]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 12097146]; GO_function: GO:0005543 - phospholipid binding [Evidence IDA] [PMID 12097146]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI] [PMID 17417630]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IGI] [PMID 16615892]; Boi1p 71937..74573 Sugiyamaella lignohabitans 30034750 AWJ20_29 CDS CDC27 NC_031672.1 74755 77142 R Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 8895471]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA,IMP] [PMID 16481473]; anaphase promoting complex subunit CDC27 complement(74755..77142) Sugiyamaella lignohabitans 30034861 AWJ20_30 CDS TMN3 NC_031672.1 78732 80636 D Protein with a role in cellular adhesion and filamentous growth; similar to Emp70p and Tmn2p; member of Transmembrane Nine family with 9 transmembrane segments; localizes to Golgi; induced by 8-methoxypsoralen plus UVA irradiation; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI] [PMID 20681974]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 18178563]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 18178563]; GO_process: GO:0007034 - vacuolar transport [Evidence IGI] [PMID 20526336]; Tmn3p 78732..80636 Sugiyamaella lignohabitans 30034973 AWJ20_32 CDS FDH1 NC_031672.1 87056 87262 R NAD(+)-dependent formate dehydrogenase; may protect cells from exogenous formate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11921099]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IGI,ISS] [PMID 11921099]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 21246355]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 11921099]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 19564482]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; formate dehydrogenase (NAD+) complement(87056..87262) Sugiyamaella lignohabitans 30035195 AWJ20_33 CDS FDH1 NC_031672.1 87345 88211 R NAD(+)-dependent formate dehydrogenase; may protect cells from exogenous formate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11921099]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IGI,ISS] [PMID 11921099]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 21246355]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 11921099]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 19564482]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; formate dehydrogenase (NAD+) complement(87345..88211) Sugiyamaella lignohabitans 30035306 AWJ20_34 CDS DSD1 NC_031672.1 88842 90113 D D-serine dehydratase (aka D-serine ammonia-lyase); converts D-serine to pyruvate and ammonia by a reaction dependent on pyridoxal 5'-phosphate and zinc; may play a role in D-serine detoxification; L-serine is not a substrate; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008721 - D-serine ammonia-lyase activity [Evidence IEA]; GO_function: GO:0008721 - D-serine ammonia-lyase activity [Evidence IDA] [PMID 17869212]; GO_function: GO:0008721 - D-serine ammonia-lyase activity [Evidence IDA] [PMID 17937657]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0070178 - D-serine metabolic process [Evidence IMP] [PMID 17937657]; D-serine ammonia-lyase DSD1 88842..90113 Sugiyamaella lignohabitans 30035417 AWJ20_35 CDS TAF8 NC_031672.1 90182 92092 R TFIID subunit (65 kDa); involved in RNA polymerase II transcription initiation; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf8p complement(90182..92092) Sugiyamaella lignohabitans 30035528 AWJ20_36 CDS DLD1 NC_031672.1 92508 94247 R D-lactate dehydrogenase; oxidizes D-lactate to pyruvate, transcription is heme-dependent, repressed by glucose, and derepressed in ethanol or lactate; located in the mitochondrial inner membrane; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9525904]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IMP,ISS] [PMID 8492799]; GO_function: GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8492799]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Dld1p complement(92508..94247) Sugiyamaella lignohabitans 30035639 AWJ20_37 CDS DSK2 NC_031672.1 94768 95985 R Nuclear-enriched ubiquitin-like polyubiquitin-binding protein; required for spindle pole body (SPB) duplication and for transit through the G2/M phase of the cell cycle; involved in proteolysis; interacts with the proteasome; protein abundance increases in response to DNA replication stress; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 8070654]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP,IPI] [PMID 11805328]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15167887]; GO_process: GO:0030474 - spindle pole body duplication [Evidence IGI] [PMID 8070654]; Dsk2p complement(94768..95985) Sugiyamaella lignohabitans 30035749 AWJ20_39 CDS MAK21 NC_031672.1 96976 100074 R Constituent of 66S pre-ribosomal particles; required for large (60S) ribosomal subunit biogenesis; acts as part of a Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription and has a role in bigenesis of the large ribosomal subunit; involved in nuclear export of pre-ribosomes; required for maintenance of dsRNA virus; homolog of human CAATT-binding protein; GO_component: GO:0030690 - Noc1p-Noc2p complex [Evidence IPI] [PMID 11371346]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23209026]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 9786894]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 23209026]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Mak21p complement(96976..100074) Sugiyamaella lignohabitans 30035971 AWJ20_40 CDS MBP1 NC_031672.1 100553 103243 R transcription factor MBP1 complement(100553..103243) Sugiyamaella lignohabitans 30036083 AWJ20_41 CDS EMP70 NC_031672.1 106800 108671 R Protein with a role in cellular adhesion and filamentous growth; also endosome-to-vacuole sorting; similar to Tmn3p; member of Transmembrane Nine family of proteins with 9 transmembrane segments; EMP70 has a paralog, TMN2, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 8314797]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20681974]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI,IMP] [PMID 20681974]; GO_process: GO:0016197 - endosomal transport [Evidence IMP] [PMID 20526336]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 18178563]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 18178563]; GO_process: GO:0007034 - vacuolar transport [Evidence IGI] [PMID 20526336]; Emp70p complement(106800..108671) Sugiyamaella lignohabitans 30036194 AWJ20_42 CDS TRS85 NC_031672.1 109594 111672 D Component of transport protein particle (TRAPP) complex III; TRAPPIII is a multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating endosome-Golgi traffic and required for membrane expansion during autophagy and the CVT pathway; directs Ypt1p to the PAS; late post-replication meiotic role; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 23986483]; GO_component: GO:1990072 - TRAPPIII protein complex [Evidence IDA] [PMID 20375281]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IDA] [PMID 23129774]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 20375281]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 16874038]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20375281]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 10727015]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 23129774]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 16079147]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 16874038]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20375281]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 8619313]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 16079147]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 16874038]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0034497 - protein localization to pre-autophagosomal structure [Evidence IMP] [PMID 20375281]; GO_process: GO:0034497 - protein localization to pre-autophagosomal structure [Evidence IMP] [PMID 23129774]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016050 - vesicle organization [Evidence IMP] [PMID 16079147]; Trs85p 109594..111672 Sugiyamaella lignohabitans 30036305 AWJ20_43 CDS FOL1 NC_031672.1 112903 115359 R Multifunctional enzyme of the folic acid biosynthesis pathway; has dihydropteroate synthetase, dihydro-6-hydroxymethylpterin pyrophosphokinase, and dihydroneopterin aldolase activities; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8813764]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IDA] [PMID 15169867]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence IEA,IEA]; GO_function: GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence IDA] [PMID 15169867]; GO_function: GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence ISS] [PMID 9234673]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004150 - dihydroneopterin aldolase activity [Evidence IEA,IEA]; GO_function: GO:0004150 - dihydroneopterin aldolase activity [Evidence ISS] [PMID 11752249]; GO_function: GO:0004150 - dihydroneopterin aldolase activity [Evidence IDA] [PMID 15169867]; GO_function: GO:0004156 - dihydropteroate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004156 - dihydropteroate synthase activity [Evidence IMP] [PMID 11731153]; GO_function: GO:0004156 - dihydropteroate synthase activity [Evidence IDA] [PMID 15169867]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0006760 - folic acid-containing compound metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0042558 - pteridine-containing compound metabolic process [Evidence IEA]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IMP] [PMID 11731153]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IMP] [PMID 15169867]; trifunctional dihydropteroate synthetase/dihydrohydroxymethylpterin pyrophosphokinase/dihydroneopterin aldolase FOL1 complement(112903..115359) Sugiyamaella lignohabitans 30036416 AWJ20_44 CDS AWJ20_44 NC_031672.1 118444 120015 D uncharacterized protein 118444..120015 Sugiyamaella lignohabitans 30036527 AWJ20_45 CDS YAP3 NC_031672.1 122886 123890 D Basic leucine zipper (bZIP) transcription factor; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 9372930]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA] [PMID 9372930]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9372930]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Yap3p 122886..123890 Sugiyamaella lignohabitans 30036638 AWJ20_46 CDS TPO1 NC_031672.1 124269 126014 R Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p complement(124269..126014) Sugiyamaella lignohabitans 30036749 AWJ20_47 CDS SNF1 NC_031672.1 129232 131217 D AMP-activated serine/threonine protein kinase; found in a complex containing Snf4p and members of the Sip1p/Sip2p/Gal83p family; required for transcription of glucose-repressed genes, thermotolerance, sporulation, and peroxisome biogenesis; involved in regulation of the nucleocytoplasmic shuttling of Hxk2p; regulates filamentous growth in response to starvation; SUMOylation by Mms21p inhibits its function and targets Snf1p for destruction via the Slx5-Slx8 Ubiquitin ligase; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IDA] [PMID 12393914]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IDA,IPI] [PMID 2481228]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IPI] [PMID 9121458]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 11331606]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17237508]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IPI] [PMID 11331606]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005641 - nuclear envelope lumen [Evidence IDA] [PMID 17237508]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11331606]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17237508]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IMP] [PMID 11486005]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IMP] [PMID 2557546]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IMP] [PMID 7913470]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 11486005]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 2557546]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 7913470]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0042710 - biofilm formation [Evidence IMP] [PMID 12024013]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007155 - cell adhesion [Evidence IMP] [PMID 12556493]; GO_process: GO:0006995 - cellular response to nitrogen starvation [Evidence IDA] [PMID 12024013]; GO_process: GO:0071940 - fungal-type cell wall assembly [Evidence IMP] [PMID 24486034]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 11095711]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 12556493]; GO_process: GO:0017148 - negative regulation of translation [Evidence IGI,IMP] [PMID 18955495]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:1900436 - positive regulation of filamentous growth of a population of unicellular organisms in response to starvation [Evidence IMP] [PMID 22904036]; GO_process: GO:0045722 - positive regulation of gluconeogenesis [Evidence IMP] [PMID 8628258]; GO_process: GO:0045722 - positive regulation of gluconeogenesis [Evidence IMP] [PMID 8710504]; GO_process: GO:0045722 - positive regulation of gluconeogenesis [Evidence IMP] [PMID 9111319]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 11486005]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 12024013]; GO_process: GO:0006109 - regulation of carbohydrate metabolic process [Evidence IGI,IPI] [PMID 12167649]; GO_process: GO:0001302 - replicative cell aging [Evidence IGI,IMP] [PMID 10921902]; AMP-activated serine/threonine-protein kinase catalytic subunit SNF1 129232..131217 Sugiyamaella lignohabitans 30036859 AWJ20_48 CDS AWJ20_48 NC_031672.1 131400 132899 R uncharacterized protein complement(131400..132899) Sugiyamaella lignohabitans 30036970 AWJ20_49 CDS HST3 NC_031672.1 135364 136401 D Member of the Sir2 family of NAD(+)-dependent protein deacetylases; involved along with Hst4p in telomeric silencing, cell cycle progression, radiation resistance, genomic stability and short-chain fatty acid metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12242223]; GO_function: GO:0003677 - DNA binding [Evidence ISS] [PMID 7498786]; GO_function: GO:0070403 - NAD+ binding [Evidence IEA]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IMP] [PMID 16815704]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 7498786]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP] [PMID 16815704]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0046459 - short-chain fatty acid metabolic process [Evidence IMP] [PMID 12618394]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hst3p 135364..136401 Sugiyamaella lignohabitans 30037081 AWJ20_50 CDS JLP1 NC_031672.1 137523 138677 D Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 137523..138677 Sugiyamaella lignohabitans 30037193 AWJ20_51 CDS AWJ20_51 NC_031672.1 138819 139469 D uncharacterized protein 138819..139469 Sugiyamaella lignohabitans 30037304 AWJ20_52 CDS AWJ20_52 NC_031672.1 151135 154011 R uncharacterized protein complement(151135..154011) Sugiyamaella lignohabitans 30037415 AWJ20_53 CDS CAJ1 NC_031672.1 163382 164872 D Nuclear type II J heat shock protein of the E. coli dnaJ family; contains a leucine zipper-like motif, binds to non-native substrates for presentation to Ssa3p, may function during protein translocation, assembly and disassembly; GO_component: GO:0005634 - nucleus [Evidence TAS] [PMID 15170475]; GO_function: GO:0051087 - chaperone binding [Evidence ISS] [PMID 8045411]; GO_process: GO:0006457 - protein folding [Evidence ISS] [PMID 8045411]; Caj1p 163382..164872 Sugiyamaella lignohabitans 30037525 AWJ20_54 CDS YCK2 NC_031672.1 165416 166933 R serine/threonine protein kinase YCK2 complement(165416..166933) Sugiyamaella lignohabitans 30037583 AWJ20_55 CDS AWJ20_55 NC_031672.1 177717 178733 R uncharacterized protein complement(177717..178733) Sugiyamaella lignohabitans 30037594 AWJ20_56 CDS AWJ20_56 NC_031672.1 181958 182758 D uncharacterized protein 181958..182758 Sugiyamaella lignohabitans 30037605 AWJ20_57 CDS AWJ20_57 NC_031672.1 183394 188358 D uncharacterized protein 183394..188358 Sugiyamaella lignohabitans 30037616 AWJ20_58 CDS UPS2 NC_031672.1 191991 192554 D Mitochondrial intermembrane space protein; involved in phospholipid metabolism; has role in regulation of phospholipid metabolism by inhibiting conversion of phosphatidylethanolamine to phosphatidylcholine; null mutant has defects in mitochondrial morphology; similar to Ups1p, Ups3p and to human PRELI; UPS2 has a paralog, UPS3, that arose from the whole genome duplication; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 19506038]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 19506038]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032048 - cardiolipin metabolic process [Evidence IGI] [PMID 19506038]; GO_process: GO:0042407 - cristae formation [Evidence IGI,IMP] [PMID 19221197]; GO_process: GO:2001246 - negative regulation of phosphatidylcholine biosynthetic process [Evidence IMP] [PMID 22403410]; GO_process: GO:0046337 - phosphatidylethanolamine metabolic process [Evidence IGI,IMP] [PMID 19221197]; Ups2p 191991..192554 Sugiyamaella lignohabitans 30037627 AWJ20_59 CDS SLM5 NC_031672.1 193004 194410 R Mitochondrial asparaginyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 9030748]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004816 - asparagine-tRNA ligase activity [Evidence IDA] [PMID 9030748]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IDA] [PMID 9030748]; GO_process: GO:0070145 - mitochondrial asparaginyl-tRNA aminoacylation [Evidence IMP] [PMID 9030748]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; asparagine--tRNA ligase SLM5 complement(193004..194410) Sugiyamaella lignohabitans 30037638 AWJ20_60 CDS PLB1 NC_031672.1 198315 200189 D Phospholipase B (lysophospholipase) involved in lipid metabolism; required for efficient acyl chain remodeling of newly synthesized phosphatidylethanolamine-derived phosphatidylcholine; required for deacylation of phosphatidylcholine and phosphatidylethanolamine but not phosphatidylinositol; PLB1 has a paralog, PLB3, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0042597 - periplasmic space [Evidence IDA] [PMID 8051052]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8051052]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IMP] [PMID 8051052]; GO_function: GO:0004620 - phospholipase activity [Evidence IEA]; GO_process: GO:0006650 - glycerophospholipid metabolic process [Evidence IMP] [PMID 8051052]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0036151 - phosphatidylcholine acyl-chain remodeling [Evidence IMP] [PMID 23501167]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; Plb1p 198315..200189 Sugiyamaella lignohabitans 30037650 AWJ20_61 CDS AWJ20_61 NC_031672.1 200384 201934 R Putative glycoside hydrolase of the mitochondrial intermembrane space; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; 17-beta-hydroxysteroid dehydrogenase-like protein complement(200384..201934) Sugiyamaella lignohabitans 30037661 AWJ20_62 CDS VPS1 NC_031672.1 203639 205672 R Dynamin-like GTPase required for vacuolar sorting; also involved in actin cytoskeleton organization, endocytosis, late Golgi-retention of some proteins, regulation of peroxisome biogenesis; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 20841380]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 15550248]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 16520372]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA,ISS] [PMID 8299420]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI,IMP,IPI] [PMID 15265985]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI,IMP] [PMID 20841380]; GO_process: GO:0060988 - lipid tube assembly [Evidence IDA] [PMID 20841380]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0016559 - peroxisome fission [Evidence IMP] [PMID 18445678]; GO_process: GO:0007031 - peroxisome organization [Evidence IDA,IGI,IMP] [PMID 12707309]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 8299420]; GO_process: GO:0007034 - vacuolar transport [Evidence IMP] [PMID 8299420]; dynamin-like GTPase VPS1 complement(203639..205672) Sugiyamaella lignohabitans 30037672 AWJ20_63 CDS LAS17 NC_031672.1 206199 208523 R Actin assembly factor; C-terminal WCA domain activates Arp2/3 complex-mediated nucleation of branched actin filaments and a polyproline domain which can nucleate actin filaments independent of Arp2/3; mutants are defective in actin cytoskeleton dependent processes such as: endocytosis, bud site selection and cytokinesis; localizes with the Arp2/3 complex to actin cortical patches; homolog of the Wiskott-Aldrich Syndrome protein (WASP), implicated in severe immunodeficiency; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10512884]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 9024694]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0003779 - actin binding [Evidence IDA] [PMID 10512884]; GO_function: GO:0003779 - actin binding [Evidence IDA,IPI] [PMID 23290554]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI,IMP] [PMID 18177206]; GO_process: GO:0007015 - actin filament organization [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence IDA] [PMID 9214384]; GO_process: GO:0030041 - actin filament polymerization [Evidence IDA] [PMID 22973053]; GO_process: GO:0045010 - actin nucleation [Evidence IDA] [PMID 23290554]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:2000601 - positive regulation of Arp2/3 complex-mediated actin nucleation [Evidence IEA]; GO_process: GO:2000601 - positive regulation of Arp2/3 complex-mediated actin nucleation [Evidence IDA] [PMID 10322115]; GO_process: GO:0032233 - positive regulation of actin filament bundle assembly [Evidence IDA] [PMID 19158382]; Las17p complement(206199..208523) Sugiyamaella lignohabitans 30037683 AWJ20_64 CDS AWJ20_64 NC_031672.1 210307 211734 R uncharacterized protein complement(210307..211734) Sugiyamaella lignohabitans 30037694 AWJ20_65 CDS AWJ20_65 NC_031672.1 215475 216728 R uncharacterized protein complement(215475..216728) Sugiyamaella lignohabitans 30037705 AWJ20_66 CDS CAF40 NC_031672.1 217960 219288 R Component of the CCR4-NOT transcriptional complex; evolutionarily conserved; involved in controlling mRNA initiation, elongation, and degradation; binds Cdc39p; GO_component: GO:0030015 - CCR4-NOT core complex [Evidence IPI] [PMID 11733989]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA,IPI] [PMID 21406554]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 11733989]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; CCR4-NOT core subunit CAF40 complement(217960..219288) Sugiyamaella lignohabitans 30037716 AWJ20_67 CDS HRR25 NC_031672.1 227115 228152 D serine/threonine protein kinase HRR25 227115..228152 Sugiyamaella lignohabitans 30037727 AWJ20_68 CDS NPY1 NC_031672.1 228875 230263 D NADH diphosphatase (pyrophosphatase); hydrolyzes the pyrophosphate linkage in NADH and related nucleotides; localizes to peroxisomes; nudix hydrolase family member; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 11361135]; GO_function: GO:0000210 - NAD+ diphosphatase activity [Evidence IEA]; GO_function: GO:0000210 - NAD+ diphosphatase activity [Evidence IDA] [PMID 11361135]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_process: GO:0006734 - NADH metabolic process [Evidence IDA] [PMID 11361135]; NAD(+) diphosphatase 228875..230263 Sugiyamaella lignohabitans 30037738 AWJ20_69 CDS MSS4 NC_031672.1 233185 235227 D Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 233185..235227 Sugiyamaella lignohabitans 30037749 AWJ20_70 CDS GLO2 NC_031672.1 237728 238030 R Cytoplasmic glyoxalase II; catalyzes the hydrolysis of S-D-lactoylglutathione into glutathione and D-lactate; GLO2 has a paralog, GLO4, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9261170]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004416 - hydroxyacylglutathione hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004416 - hydroxyacylglutathione hydrolase activity [Evidence IDA,IGI,IMP] [PMID 9261170]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IEA]; GO_process: GO:0019243 - methylglyoxal catabolic process to D-lactate [Evidence IDA,IGI,IMP] [PMID 9261170]; hydroxyacylglutathione hydrolase GLO2 complement(237728..238030) Sugiyamaella lignohabitans 30037761 AWJ20_71 CDS AWJ20_71 NC_031672.1 240865 241452 D glycerophosphoryl diester phosphodiesterase (predicted) 240865..241452 Sugiyamaella lignohabitans 30037772 AWJ20_72 CDS SEC63 NC_031672.1 242359 244443 D protein-transporting protein SEC63 242359..244443 Sugiyamaella lignohabitans 30037783 AWJ20_73 CDS CUE5 NC_031672.1 245468 246964 R Ubiquitin-binding protein; contains a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; CUE5 has a paralog, DON1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 12628920]; GO_process: GO:0008150 - biological_process [Evidence ND]; Cue5p complement(245468..246964) Sugiyamaella lignohabitans 30037794 AWJ20_74 CDS MEX67 NC_031672.1 248059 249867 D Poly(A)RNA binding protein involved in nuclear mRNA export; component of the nuclear pore; ortholog of human TAP; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0042272 - nuclear RNA export factor complex [Evidence IPI] [PMID 9774696]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12524544]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12411502]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 10722667]; GO_process: GO:0051028 - mRNA transport [Evidence IEA,IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI,IMP] [PMID 17434126]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IMP] [PMID 22956913]; GO_process: GO:0006810 - transport [Evidence IEA]; Mex67p 248059..249867 Sugiyamaella lignohabitans 30037805 AWJ20_75 CDS ERG5 NC_031672.1 251796 253397 R C-22 sterol desaturase; a cytochrome P450 enzyme that catalyzes the formation of the C-22(23) double bond in the sterol side chain in ergosterol biosynthesis; may be a target of azole antifungal drugs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0000249 - C-22 sterol desaturase activity [Evidence IDA] [PMID 8543054]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 8543054]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 8635732]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; C-22 sterol desaturase complement(251796..253397) Sugiyamaella lignohabitans 30037816 AWJ20_76 CDS UGA4 NC_031672.1 255830 256993 R GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p complement(255830..256993) Sugiyamaella lignohabitans 30037827 AWJ20_77 CDS AWJ20_77 NC_031672.1 259206 260735 D uncharacterized protein 259206..260735 Sugiyamaella lignohabitans 30037838 AWJ20_78 CDS MID1 NC_031672.1 262714 264360 D N-glycosylated integral membrane protein of the ER and plasma membrane; functions as a stretch-activated Ca2+-permeable cation channel required for Ca2+ influx stimulated by pheromone; interacts with Cch1p; forms an oligomer; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14729456]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10958666]; GO_function: GO:0005262 - calcium channel activity [Evidence IEA]; GO_function: GO:0005262 - calcium channel activity [Evidence IMP] [PMID 10958666]; GO_function: GO:0005262 - calcium channel activity [Evidence IMP] [PMID 9343395]; GO_function: GO:0015275 - stretch-activated, cation-selective, calcium channel activity [Evidence IDA] [PMID 10436155]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IDA] [PMID 10958666]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mid1p 262714..264360 Sugiyamaella lignohabitans 30037849 AWJ20_79 CDS PUS4 NC_031672.1 264410 265621 R Pseudouridine synthase; catalyzes only the formation of pseudouridine-55 (Psi55), a highly conserved tRNA modification, in mitochondrial and cytoplasmic tRNAs; PUS4 overexpression leads to translational derepression of GCN4 (Gcd- phenotype); GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 9358157]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 9358157]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA,IGI] [PMID 9358157]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 9358157]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; pseudouridine synthase PUS4 complement(264410..265621) Sugiyamaella lignohabitans 30037860 AWJ20_80 CDS SHR5 NC_031672.1 265857 266546 R Palmitoyltransferase subunit; this complex adds a palmitoyl lipid moiety to heterolipidated substrates such as Ras1p and Ras2p through a thioester linkage; palmitoylation is required for Ras2p membrane localization; Palmitoyltransferase is composed of Shr5p and Erf2; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0031211 - endoplasmic reticulum palmitoyltransferase complex [Evidence IPI] [PMID 12193598]; GO_component: GO:0042406 - extrinsic component of endoplasmic reticulum membrane [Evidence IDA] [PMID 12379641]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016409 - palmitoyltransferase activity [Evidence IDA] [PMID 12193598]; GO_process: GO:0018345 - protein palmitoylation [Evidence IDA] [PMID 12193598]; GO_process: GO:0018345 - protein palmitoylation [Evidence IMP] [PMID 16751107]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 7532279]; Shr5p complement(265857..266546) Sugiyamaella lignohabitans 30037872 AWJ20_81 CDS MDL2 NC_031672.1 267532 270087 D Mitochondrial inner membrane half-type ABC transporter; required for respiratory growth at high temperature; localizes to vacuole membrane in response to H2O2; similar to human TAP1 and TAP2 implicated in bare lymphocyte syndrome and Wegener-like granulomatosis; GO_component: GO:0016021 - integral component of membrane [Evidence IBA,IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11251115]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IRD]; GO_component: GO:0005774 - vacuolar membrane [Evidence IDA] [PMID 23509072]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0015421 - oligopeptide-transporting ATPase activity [Evidence IBA]; GO_function: GO:0015421 - oligopeptide-transporting ATPase activity [Evidence ISA] [PMID 11251115]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IDA] [PMID 23509072]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090374 - oligopeptide export from mitochondrion [Evidence ISA] [PMID 11251115]; GO_process: GO:0006857 - oligopeptide transport [Evidence ISA] [PMID 11251115]; GO_process: GO:0055085 - transmembrane transport [Evidence IBA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette permease MDL2 267532..270087 Sugiyamaella lignohabitans 30037883 AWJ20_82 CDS HNM1 NC_031672.1 270632 272203 D Plasma membrane transporter for choline, ethanolamine, and carnitine; involved in the uptake of nitrogen mustard and the uptake of glycine betaine during hypersaline stress; co-regulated with phospholipid biosynthetic genes and negatively regulated by choline and myo-inositol; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 2203793]; GO_function: GO:1901235 - (R)-carnitine transmembrane transporter activity [Evidence IMP] [PMID 23755272]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IMP] [PMID 2203793]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_function: GO:0034228 - ethanolamine transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_process: GO:1900749 - (R)-carnitine transport [Evidence IMP] [PMID 23755272]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015871 - choline transport [Evidence IMP] [PMID 2203793]; GO_process: GO:0015871 - choline transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0034229 - ethanolamine transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0031460 - glycine betaine transport [Evidence IMP] [PMID 16487344]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hnm1p 270632..272203 Sugiyamaella lignohabitans 30037894 AWJ20_83 CDS VBA5 NC_031672.1 277639 279300 D Plasma membrane protein of the Major Facilitator Superfamily (MFS); involved in amino acid uptake and drug sensitivity; VBA5 has a paralog, VBA3, that arose from a segmental duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23047103]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015809 - arginine transport [Evidence IGI,IMP] [PMID 23047103]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vba5p 277639..279300 Sugiyamaella lignohabitans 30037905 AWJ20_84 CDS YSP2 NC_031672.1 281146 283800 D Protein involved in programmed cell death; mutant shows resistance to cell death induced by amiodarone or intracellular acidification; YSP2 has a paralog, YHR080C, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962064]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006915 - apoptotic process [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 16962064]; Ysp2p 281146..283800 Sugiyamaella lignohabitans 30037916 AWJ20_85 CDS AWJ20_85 NC_031672.1 283843 284679 R uncharacterized protein complement(283843..284679) Sugiyamaella lignohabitans 30037927 AWJ20_86 CDS AWJ20_86 NC_031672.1 285576 287024 D uncharacterized protein 285576..287024 Sugiyamaella lignohabitans 30037938 AWJ20_88 CDS ERG13 NC_031672.1 290253 291464 R 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase; catalyzes the formation of HMG-CoA from acetyl-CoA and acetoacetyl-CoA; involved in the second step in mevalonate biosynthesis; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004421 - hydroxymethylglutaryl-CoA synthase activity [Evidence IEA,IEA]; GO_function: GO:0004421 - hydroxymethylglutaryl-CoA synthase activity [Evidence IMP] [PMID 6148937]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 6148937]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; hydroxymethylglutaryl-CoA synthase complement(290253..291464) Sugiyamaella lignohabitans 30037960 AWJ20_89 CDS LDB17 NC_031672.1 295364 296728 D Protein involved in the regulation of endocytosis; transiently recruited to actin cortical patches in a SLA1-dependent manner after late coat component assembly; GFP-fusion protein localizes to the periphery, cytoplasm, bud, and bud neck; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 19506040]; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 19506040]; Ldb17p 295364..296728 Sugiyamaella lignohabitans 30037971 AWJ20_90 CDS AWJ20_90 NC_031672.1 296823 297761 R Glyoxylate reductase; acts on glyoxylate and hydroxypyruvate substrates; YPL113C is not an essential gene; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IMP] [PMID 17173333]; GO_process: GO:0008152 - metabolic process [Evidence IMP] [PMID 17173333]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glyoxylate reductase complement(296823..297761) Sugiyamaella lignohabitans 30037983 AWJ20_91 CDS AWJ20_91 NC_031672.1 300065 300874 D uncharacterized protein 300065..300874 Sugiyamaella lignohabitans 30037994 AWJ20_92 CDS RCY1 NC_031672.1 300953 303595 R F-box protein involved in recycling endocytosed proteins; involved in recycling plasma membrane proteins internalized by endocytosis; localized to sites of polarized growth; direct interaction with C-terminal cytoplasmic region of Drs2p plays an important role for Drs2p function in endocytic recycling pathway; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15537705]; GO_component: GO:0051286 - cell tip [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15537705]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 11287615]; GO_function: GO:0000149 - SNARE binding [Evidence IMP,IPI] [PMID 11287615]; GO_function: GO:0000149 - SNARE binding [Evidence IPI] [PMID 15537705]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IMP] [PMID 15537705]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 24272750]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 10769031]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 11378903]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048278 - vesicle docking [Evidence IEA]; Rcy1p complement(300953..303595) Sugiyamaella lignohabitans 30038005 AWJ20_93 CDS SGD1 NC_031672.1 303972 306851 D Essential nuclear protein; required for biogenesis of the small ribosomal subunit; has a possible role in the osmoregulatory glycerol response; putative homolog of human NOM1 which is implicated in acute myeloid leukemia; GO_component: GO:0097078 - FAl1-SGD1 complex [Evidence IPI] [PMID 21576267]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11042259]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA,ISS] [PMID 11042259]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006972 - hyperosmotic response [Evidence IGI] [PMID 11042259]; GO_process: GO:0006972 - hyperosmotic response [Evidence IGI] [PMID 12073033]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 19806183]; Sgd1p 303972..306851 Sugiyamaella lignohabitans 30038016 AWJ20_94 CDS CAB4 NC_031672.1 306924 307952 R Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC); subunits of this complex are: Cab2p, Cab3p, Cab4p, Cab5p, Sis2p and Vhs3p; probable pantetheine-phosphate adenylyltransferase (PPAT); PPAT catalyzes the fourth step in the biosynthesis of coenzyme A from pantothenate; null mutant lethality is complemented by E. coli coaD (encoding PPAT); widely conserved; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]; GO_function: GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence ISS] [PMID 11923312]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 11923312]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IGI] [PMID 19266201]; putative pantetheine-phosphate adenylyltransferase complement(306924..307952) Sugiyamaella lignohabitans 30038027 AWJ20_95 CDS CWC22 NC_031672.1 311106 314132 D Spliceosome-associated protein that is required for pre-mRNA splicing; necessary for Prp2p function at the first catalytic step of splicing; has similarity to S. pombe Cwf22p; CWC22 is an essential protein; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 20956557]; GO_component: GO:0005684 - U2-type spliceosomal complex [Evidence IDA] [PMID 11884590]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 20956557]; Cwc22p 311106..314132 Sugiyamaella lignohabitans 30038038 AWJ20_96 CDS LPD1 NC_031672.1 315673 316830 D Dihydrolipoamide dehydrogenase; the lipoamide dehydrogenase component (E3) of the pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase multi-enzyme complexes; LPD1 has a paralog, IRC15, that arose from the whole genome duplication; GO_component: GO:0005960 - glycine cleavage complex [Evidence IMP] [PMID 7498764]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 11926067]; GO_component: GO:0009353 - mitochondrial oxoglutarate dehydrogenase complex [Evidence IDA] [PMID 2072900]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IDA] [PMID 2821168]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IMP] [PMID 7498764]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016668 - oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor [Evidence IEA]; GO_function: GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IMP] [PMID 3528755]; GO_function: GO:0004738 - pyruvate dehydrogenase activity [Evidence IMP] [PMID 3528755]; GO_process: GO:0006103 - 2-oxoglutarate metabolic process [Evidence IMP] [PMID 3528755]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IMP] [PMID 7498764]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0006546 - glycine catabolic process [Evidence IMP] [PMID 7498764]; GO_process: GO:0042743 - hydrogen peroxide metabolic process [Evidence IGI,IMP] [PMID 17110466]; GO_process: GO:0006550 - isoleucine catabolic process [Evidence IMP] [PMID 1479341]; GO_process: GO:0006552 - leucine catabolic process [Evidence IMP] [PMID 1479341]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 3528755]; GO_process: GO:0006574 - valine catabolic process [Evidence IMP] [PMID 1479341]; dihydrolipoyl dehydrogenase 315673..316830 Sugiyamaella lignohabitans 30038049 AWJ20_97 CDS AWJ20_97 NC_031672.1 315747 316049 R transposase complement(315747..316049) Sugiyamaella lignohabitans 30038060 AWJ20_98 CDS RAD51 NC_031672.1 317652 318515 R Strand exchange protein; forms a helical filament with DNA that searches for homology; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; homolog of Dmc1p and bacterial RecA protein; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 9427283]; GO_component: GO:0000228 - nuclear chromosome [Evidence IDA] [PMID 11459983]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 8066464]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0000150 - recombinase activity [Evidence IDA] [PMID 8066464]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 20371520]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006259 - DNA metabolic process [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IDA] [PMID 22955832]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0045002 - double-strand break repair via single-strand annealing [Evidence IMP] [PMID 8849880]; GO_process: GO:0030491 - heteroduplex formation [Evidence IDA] [PMID 10506208]; GO_process: GO:0000709 - meiotic joint molecule formation [Evidence IMP] [PMID 1581961]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 16581767]; GO_process: GO:0042148 - strand invasion [Evidence IDA] [PMID 8066464]; GO_process: GO:0042148 - strand invasion [Evidence IDA] [PMID 9271413]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IMP] [PMID 11238918]; recombinase RAD51 complement(317652..318515) Sugiyamaella lignohabitans 30038071 AWJ20_99 CDS CTS1 NC_031672.1 326344 328092 D Endochitinase; required for cell separation after mitosis; transcriptional activation during the G1 phase of the cell cycle is mediated by transcription factor Ace2p; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11747810]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 19129178]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 1918080]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11747810]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 1918080]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11914276]; GO_function: GO:0008061 - chitin binding [Evidence IEA]; GO_function: GO:0004568 - chitinase activity [Evidence IEA,IEA]; GO_function: GO:0008843 - endochitinase activity [Evidence IDA] [PMID 6799506]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IC] [PMID 3033651]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 1918080]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; Cts1p 326344..328092 Sugiyamaella lignohabitans 30038082 AWJ20_100 CDS SEC7 NC_031672.1 330231 332741 D Arf family guanine nucleotide exchange factor SEC7 330231..332741 Sugiyamaella lignohabitans 30032754 AWJ20_101 CDS PUP3 NC_031672.1 333438 334013 D Beta 3 subunit of the 20S proteasome; involved in ubiquitin-dependent catabolism; human homolog is subunit C10; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IC] [PMID 9087403]; GO_function: GO:0061133 - endopeptidase activator activity [Evidence IGI] [PMID 9207060]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 3 333438..334013 Sugiyamaella lignohabitans 30032765 AWJ20_102 CDS AWJ20_102 NC_031672.1 334906 336996 D uncharacterized protein 334906..336996 Sugiyamaella lignohabitans 30032776 AWJ20_103 CDS TSC11 NC_031672.1 339086 343338 D Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p); TORC2 is a membrane-associated complex that regulates actin cytoskeletal dynamics during polarized growth and cell wall integrity; involved in sphingolipid metabolism; contains a RasGEFN domain; GO_component: GO:0031932 - TORC2 complex [Evidence IEA]; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12631735]; GO_process: GO:0031929 - TOR signaling [Evidence IEA]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IPI] [PMID 12408816]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 15809876]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 15809876]; GO_process: GO:0043087 - regulation of GTPase activity [Evidence IEA]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 12408816]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IGI] [PMID 9804843]; Tsc11p join(339086..339241,339436..343338) Sugiyamaella lignohabitans 30032787 AWJ20_104 CDS NMD3 NC_031672.1 343924 345444 D Protein involved in nuclear export of the large ribosomal subunit; acts as a Crm1p-dependent adapter protein for export of nascent ribosomal subunits through the nuclear pore complex; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10022925]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 10022925]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IDA] [PMID 11105761]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IDA] [PMID 17347149]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11086007]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI] [PMID 23212245]; GO_process: GO:0006810 - transport [Evidence IEA]; ribosome-binding protein NMD3 343924..345444 Sugiyamaella lignohabitans 30032798 AWJ20_105 CDS MPP10 NC_031672.1 345783 347639 D Component of the SSU processome and 90S preribosome; required for pre-18S rRNA processing, interacts with and controls the stability of Imp3p and Imp4p, essential for viability; similar to human Mpp10p; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034457 - Mpp10 complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA,IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0032040 - small-subunit processome [Evidence IMP] [PMID 12242301]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9315638]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9315638]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9315638]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Mpp10p 345783..347639 Sugiyamaella lignohabitans 30032809 AWJ20_106 CDS AWJ20_106 NC_031672.1 347803 349416 R uncharacterized protein complement(347803..349416) Sugiyamaella lignohabitans 30032820 AWJ20_107 CDS PDX1 NC_031672.1 350257 351528 D E3-binding protein of the mitochondrial pyruvate dehydrogenase complex; plays a structural role in the complex by binding and positioning Dihydrolipoamide dehydrogenase (E3) to the dihydrolipoamide acetyltransferase (E2) core; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA] [PMID 2007123]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA,IPI] [PMID 7947791]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA,IMP] [PMID 2007123]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA,IMP] [PMID 2007123]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA] [PMID 7947791]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Pdx1p 350257..351528 Sugiyamaella lignohabitans 30032831 AWJ20_108 CDS AWJ20_108 NC_031672.1 351670 352785 R uncharacterized protein complement(351670..352785) Sugiyamaella lignohabitans 30032842 AWJ20_109 CDS AWJ20_109 NC_031672.1 353688 355778 D uncharacterized protein 353688..355778 Sugiyamaella lignohabitans 30032853 AWJ20_111 CDS AWJ20_111 NC_031672.1 356310 358163 R uncharacterized protein complement(356310..358163) Sugiyamaella lignohabitans 30032876 AWJ20_113 CDS AWJ20_113 NC_031672.1 360954 362033 R uncharacterized protein complement(360954..362033) Sugiyamaella lignohabitans 30032898 AWJ20_114 CDS COX10 NC_031672.1 362363 363877 R Heme A:farnesyltransferase; catalyzes the first step in the conversion of protoheme to the heme A prosthetic group required for cytochrome c oxidase activity; human ortholog is associated with mitochondrial disorders; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IEA]; GO_function: GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]; GO_function: GO:0008495 - protoheme IX farnesyltransferase activity [Evidence ISS] [PMID 8118433]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0048034 - heme O biosynthetic process [Evidence IEA]; GO_process: GO:0006784 - heme a biosynthetic process [Evidence IMP] [PMID 8118433]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA,IEA]; Cox10p complement(362363..363877) Sugiyamaella lignohabitans 30032909 AWJ20_115 CDS AWJ20_115 NC_031672.1 364750 365847 R uncharacterized protein complement(364750..365847) Sugiyamaella lignohabitans 30032920 AWJ20_116 CDS INP53 NC_031672.1 367099 368109 R Polyphosphatidylinositol phosphatase; dephosphorylates multiple phosphatidylinositol phosphates; involved in trans Golgi network-to-early endosome pathway; hyperosmotic stress causes translocation to actin patches; contains Sac1 and 5-ptase domains; INP53 has a paralog, INP52, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11094088]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11094088]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 9560389]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0043813 - phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IEA]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IMP] [PMID 9438131]; GO_function: GO:0043812 - phosphatidylinositol-4-phosphate phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA] [PMID 10224048]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 9438131]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; phosphatidylinositol-3-/phosphoinositide 5-phosphatase INP53 complement(367099..368109) Sugiyamaella lignohabitans 30032931 AWJ20_117 CDS AWJ20_117 NC_031672.1 368189 371158 R inositol polyphosphate phosphatase (predicted) complement(368189..371158) Sugiyamaella lignohabitans 30032942 AWJ20_118 CDS SSO2 NC_031672.1 372419 373186 R Plasma membrane t-SNARE; involved in fusion of secretory vesicles at the plasma membrane; syntaxin homolog that is functionally redundant with Sso1p; SSO2 has a paralog, SSO1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19502581]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 19502581]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IPI] [PMID 7954793]; GO_function: GO:0070300 - phosphatidic acid binding [Evidence IDA] [PMID 19502581]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence TAS] [PMID 10047442]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence TAS] [PMID 10047442]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sso2p complement(372419..373186) Sugiyamaella lignohabitans 30032953 AWJ20_119 CDS PGI1 NC_031672.1 381201 382856 D Glycolytic enzyme phosphoglucose isomerase; catalyzes the interconversion of glucose-6-phosphate and fructose-6-phosphate; required for cell cycle progression and completion of the gluconeogenic events of sporulation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IMP] [PMID 3007940]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA,IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 3020369]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 3007940]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IMP] [PMID 7901008]; glucose-6-phosphate isomerase 381201..382856 Sugiyamaella lignohabitans 30032964 AWJ20_120 CDS AWJ20_120 NC_031672.1 384229 384924 D uncharacterized protein 384229..384924 Sugiyamaella lignohabitans 30032976 AWJ20_121 CDS KSP1 NC_031672.1 385276 387441 R putative serine/threonine protein kinase KSP1 complement(385276..387441) Sugiyamaella lignohabitans 30032987 AWJ20_122 CDS AWJ20_122 NC_031672.1 392838 393656 D uncharacterized protein 392838..393656 Sugiyamaella lignohabitans 30032998 AWJ20_123 CDS AWJ20_123 NC_031672.1 395872 398796 D uncharacterized protein 395872..398796 Sugiyamaella lignohabitans 30033009 AWJ20_124 CDS ZAP1 NC_031672.1 401484 404087 D Zinc-regulated transcription factor; binds to zinc-responsive promoters to induce transcription of certain genes in presence of zinc, represses other genes in low zinc; regulates its own transcription; contains seven zinc-finger domains; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10899124]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IMP] [PMID 12549926]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA,IMP] [PMID 9786867]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA] [PMID 22128164]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 14517251]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA,IMP] [PMID 16720702]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 22128164]; GO_process: GO:0034225 - regulation of transcription from RNA polymerase II promoter in response to zinc ion starvation [Evidence IMP] [PMID 9271382]; GO_process: GO:0034225 - regulation of transcription from RNA polymerase II promoter in response to zinc ion starvation [Evidence IMP] [PMID 9786867]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Zap1p 401484..404087 Sugiyamaella lignohabitans 30033020 AWJ20_125 CDS PEP8 NC_031672.1 404377 405324 R Vacuolar protein component of the retromer; forms part of the multimeric membrane-associated retromer complex involved in vacuolar protein sorting along with Vps35p, Vps29p, Vps17p, and Vps5p; essential for endosome-to-Golgi retrograde protein transport; interacts with Ypt7p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005768 - endosome [Evidence IPI] [PMID 9700157]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0030904 - retromer complex [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IMP] [PMID 9700157]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007034 - vacuolar transport [Evidence IEA]; retromer subunit PEP8 complement(404377..405324) Sugiyamaella lignohabitans 30033031 AWJ20_126 CDS AWJ20_126 NC_031672.1 405811 407652 R uncharacterized protein complement(405811..407652) Sugiyamaella lignohabitans 30033042 AWJ20_127 CDS AWJ20_127 NC_031672.1 408233 409825 R hypothetical protein with similarity to Str2p; Str2p is a cystathionine gamma-synthase important in sulfur metabolism; YLL058W is not an essential gene; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003962 - cystathionine gamma-synthase activity [Evidence IEA]; GO_function: GO:0003962 - cystathionine gamma-synthase activity [Evidence ISS] [PMID 10821189]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence ISS] [PMID 10821189]; cystathionine gamma-synthase complement(408233..409825) Sugiyamaella lignohabitans 30033053 AWJ20_128 CDS AWJ20_128 NC_031672.1 410363 411307 D formamidase 410363..411307 Sugiyamaella lignohabitans 30033064 AWJ20_129 CDS AWJ20_129 NC_031672.1 411573 413339 R uncharacterized protein complement(411573..413339) Sugiyamaella lignohabitans 30033075 AWJ20_130 CDS AWJ20_130 NC_031672.1 414933 416363 R uncharacterized protein complement(414933..416363) Sugiyamaella lignohabitans 30033087 AWJ20_131 CDS MEP2 NC_031672.1 420374 421774 D Ammonium permease involved in regulation of pseudohyphal growth; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11069679]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IDA,IMP] [PMID 9234685]; GO_process: GO:0072488 - ammonium transmembrane transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEA,IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IMP] [PMID 9234685]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 9234685]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9482721]; GO_process: GO:0006810 - transport [Evidence IEA]; ammonium permease MEP2 420374..421774 Sugiyamaella lignohabitans 30033098 AWJ20_132 CDS AMO2 NC_031672.1 422094 424100 R one of two likely peroxisomal copper amine oxidase genes; similar to A.niger AO-I; allele of CaO19.10662; putative peroxisomal copper amine oxidase complement(422094..424100) Sugiyamaella lignohabitans 30033109 AWJ20_133 CDS MNN10 NC_031672.1 425344 426708 R Subunit of a Golgi mannosyltransferase complex; complex mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family; other members of the complex are Anp1p, Mnn9p, Mnn11p, and Hoc1p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 10037752]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 16034811]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 10037752]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 8991513]; Mnn10p complement(425344..426708) Sugiyamaella lignohabitans 30033120 AWJ20_134 CDS HOC1 NC_031672.1 429548 430714 R Alpha-1,6-mannosyltransferase; involved in cell wall mannan biosynthesis; subunit of a Golgi-localized complex that also contains Anp1p, Mnn9p, Mnn11p, and Mnn10p; identified as a suppressor of a cell lysis sensitive pkc1-371 allele; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 10037752]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 9434768]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence ISS] [PMID 9653120]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence TAS] [PMID 10037752]; GO_process: GO:0006080 - substituted mannan metabolic process [Evidence TAS] [PMID 10037752]; Hoc1p complement(429548..430714) Sugiyamaella lignohabitans 30033131 AWJ20_135 CDS MOG1 NC_031672.1 431722 432381 R Conserved nuclear protein that interacts with GTP-Gsp1p; stimulates nucleotide release from Gsp1p; involved in nuclear protein import; nucleotide release is inhibited by Yrb1p; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9860978]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IPI] [PMID 11509570]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 9860978]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mog1p complement(431722..432381) Sugiyamaella lignohabitans 30033142 AWJ20_136 CDS URB2 NC_031672.1 433916 436552 D similar to S. cerevisiae URB2 (YJR041C) essential nucleolar protein (Unhealthy Ribosome Biogenesis); allele of CaO19.5884; putative nucleolar protein URB2p 433916..436552 Sugiyamaella lignohabitans 30033153 AWJ20_137 CDS MIT1 NC_031672.1 441333 442730 D Transcriptional regulator of pseudohyphal growth; protein with sequence similarity to S. pombe gti1+ (gluconate transport inducer 1) and C. albicans Wor1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mit1p 441333..442730 Sugiyamaella lignohabitans 30033164 AWJ20_138 CDS rad4 NC_031672.1 445023 446948 D BRCT domain protein Rad4 445023..446948 Sugiyamaella lignohabitans 30033175 AWJ20_139 CDS RIT1 NC_031672.1 447292 448296 R 2'-O-ribosyl phosphate transferase; modifies the initiator methionine tRNA at position 64 to distinguish it from elongator methionine tRNA; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IDA,IGI,IMP] [PMID 7954819]; GO_process: GO:0019988 - charged-tRNA amino acid modification [Evidence IGI,IMP] [PMID 7954819]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Rit1p complement(447292..448296) Sugiyamaella lignohabitans 30033186 AWJ20_140 CDS RIT1 NC_031672.1 448499 448852 R 2'-O-ribosyl phosphate transferase; modifies the initiator methionine tRNA at position 64 to distinguish it from elongator methionine tRNA; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IDA,IGI,IMP] [PMID 7954819]; GO_process: GO:0019988 - charged-tRNA amino acid modification [Evidence IGI,IMP] [PMID 7954819]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Rit1p complement(448499..448852) Sugiyamaella lignohabitans 30033198 AWJ20_141 CDS FPR4 NC_031672.1 450374 451582 D Peptidyl-prolyl cis-trans isomerase (PPIase); nuclear proline isomerase; affects expression of multiple genes via its role in nucleosome assembly; catalyzes isomerization of proline residues in histones H3 and H4, which affects lysine methylation of those histones; PPIase domain acts as a transcriptional repressor when tethered to DNA by lexA, and repressor activity is dependent on PPIase activity; FPR4 has a paralog, FPR3, that arose from the whole genome duplication; GO_component: GO:0000785 - chromatin [Evidence IDA] [PMID 14981505]; GO_component: GO:0000785 - chromatin [Evidence IDA] [PMID 16959570]; GO_component: GO:0016020 - membrane [Evidence IBA]; GO_component: GO:0005730 - nucleolus [Evidence IBA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14981505]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9371805]; GO_function: GO:0005528 - FK506 binding [Evidence IBA,IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0005527 - macrolide binding [Evidence IDA] [PMID 9371805]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 14981505]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 16959570]; GO_process: GO:0000412 - histone peptidyl-prolyl isomerization [Evidence IEA]; GO_process: GO:0000412 - histone peptidyl-prolyl isomerization [Evidence IDA] [PMID 16959570]; GO_process: GO:0000415 - negative regulation of histone H3-K36 methylation [Evidence IMP] [PMID 16959570]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA] [PMID 16846601]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA] [PMID 24297734]; GO_process: GO:0018208 - peptidyl-proline modification [Evidence IBA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 16959570]; peptidylprolyl isomerase FPR4 450374..451582 Sugiyamaella lignohabitans 30033209 AWJ20_142 CDS SEC1 NC_031672.1 451808 453898 R Sm-like protein involved in docking and fusion of exocytic vesicles; binds to assembled SNARE complexes at the membrane and stimulates membrane fusion; localization to sites of secretion (bud neck and bud tip) is dependent on SNARE function; interacts directly with essential exocyst subunit Sec6p; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10427089]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11038189]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 10427089]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11038189]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15466482]; GO_function: GO:0000149 - SNARE binding [Evidence IDA] [PMID 10427089]; GO_process: GO:0006887 - exocytosis [Evidence IMP,IPI] [PMID 10427089]; GO_process: GO:0031340 - positive regulation of vesicle fusion [Evidence IDA] [PMID 15466482]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IEA]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IPI] [PMID 10427089]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sec1p complement(451808..453898) Sugiyamaella lignohabitans 30033220 AWJ20_143 CDS PAF1 NC_031672.1 454917 456149 R Component of the Paf1p complex involved in transcription elongation; binds to and modulates the activity of RNA polymerases I and II; required for expression of a subset of genes, including cell cycle-regulated genes; involved in SER3 repression by helping to maintain SRG1 transcription-dependent nucleosome occupancy; homolog of human PD2/hPAF1; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11884586]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11927560]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 9032243]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15149594]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643076]; GO_component: GO:0035327 - transcriptionally active chromatin [Evidence IDA] [PMID 11983171]; GO_function: GO:1990269 - RNA polymerase II C-terminal domain phosphoserine binding [Evidence IDA] [PMID 22796944]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 16581788]; GO_function: GO:0000983 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity [Evidence IDA] [PMID 16581788]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 11927560]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 16581788]; GO_function: GO:0001089 - TFIIF-class binding transcription factor activity [Evidence IMP,IPI] [PMID 9032243]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11983171]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 23109428]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 16582434]; GO_process: GO:0070911 - global genome nucleotide-excision repair [Evidence IMP] [PMID 21737840]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 15149594]; GO_process: GO:0045910 - negative regulation of DNA recombination [Evidence IMP] [PMID 9891041]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15180994]; GO_process: GO:2001255 - positive regulation of histone H3-K36 trimethylation [Evidence IMP] [PMID 17948059]; GO_process: GO:2001165 - positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues [Evidence IMP] [PMID 18469135]; GO_process: GO:2001209 - positive regulation of transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 20299458]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 14710186]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 20299458]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 12667454]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 18194564]; GO_process: GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination [Evidence IDA] [PMID 19531475]; GO_process: GO:2001166 - regulation of histone H2B ubiquitination [Evidence IMP] [PMID 12876294]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 12667454]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 12876294]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 15180994]; GO_process: GO:2001163 - regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues [Evidence IMP] [PMID 15149594]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 18194564]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11884586]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10219085]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0090262 - regulation of transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 21737840]; GO_process: GO:0031126 - snoRNA 3'-end processing [Evidence IMP] [PMID 16246725]; GO_process: GO:0001015 - snoRNA transcription from an RNA polymerase II promoter [Evidence IDA,IMP] [PMID 16246725]; GO_process: GO:0006362 - transcription elongation from RNA polymerase I promoter [Evidence IMP] [PMID 19164765]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 11927560]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IGI,IMP] [PMID 20299458]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Paf1p complement(454917..456149) Sugiyamaella lignohabitans 30033231 AWJ20_144 CDS PET8 NC_031672.1 457981 458799 R S-adenosylmethionine transporter of the mitochondrial inner membrane; member of the mitochondrial carrier family; required for biotin biosynthesis and respiratory growth; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14609944]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0000095 - S-adenosyl-L-methionine transmembrane transporter activity [Evidence IDA,IGI,IMP] [PMID 14609944]; GO_process: GO:0015805 - S-adenosyl-L-methionine transport [Evidence IDA,IGI,IMP] [PMID 14609944]; GO_process: GO:0006810 - transport [Evidence IEA]; Pet8p complement(457981..458799) Sugiyamaella lignohabitans 30033242 AWJ20_145 CDS NFS1 NC_031672.1 459771 461255 D Cysteine desulfurase; involved in iron-sulfur cluster (Fe/S) biogenesis and in thio-modification of mitochondrial and cytoplasmic tRNAs; essential protein located predominantly in mitochondria; GO_component: GO:1990221 - L-cysteine desulfurase complex [Evidence IPI] [PMID 24045011]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10406803]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19720832]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 11110795]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19720832]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0031071 - cysteine desulfurase activity [Evidence IEA,IEA]; GO_function: GO:0031071 - cysteine desulfurase activity [Evidence IDA] [PMID 12065597]; GO_function: GO:0031071 - cysteine desulfurase activity [Evidence IDA] [PMID 15220327]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 10551871]; GO_process: GO:0006534 - cysteine metabolic process [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 12970193]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IDA] [PMID 15220327]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0070903 - mitochondrial tRNA thio-modification [Evidence IMP] [PMID 14722066]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0034227 - tRNA thio-modification [Evidence IMP] [PMID 14722066]; GO_process: GO:0034227 - tRNA thio-modification [Evidence IMP] [PMID 15220327]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Nfs1p 459771..461255 Sugiyamaella lignohabitans 30033253 AWJ20_146 CDS HPA2 NC_031672.1 461730 462188 D Tetrameric histone acetyltransferase; has similarity to Gcn5p, Hat1p, Elp3p, and Hpa3p; acetylates histones H3 and H4 in vitro and exhibits autoacetylation activity; also acetylates polyamines; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence ISS] [PMID 10600387]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA] [PMID 10600387]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence ISS] [PMID 10600387]; GO_process: GO:0051289 - protein homotetramerization [Evidence IDA] [PMID 10600387]; Hpa2p 461730..462188 Sugiyamaella lignohabitans 30033264 AWJ20_147 CDS BFA1 NC_031672.1 462286 464847 R Component of the GTPase-activating Bfa1p-Bub2p complex; involved in multiple cell cycle checkpoint pathways that control exit from mitosis; specifically required when telomeres are damaged, but not for all types of chromosomal DNA damage; phosphorylated by the Polo-like kinase Cdc5p; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000922 - spindle pole [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 10220406]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 15147270]; GO_function: GO:0005096 - GTPase activator activity [Evidence IDA] [PMID 16682821]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0031578 - mitotic spindle orientation checkpoint [Evidence IGI,IMP] [PMID 16039591]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence IMP] [PMID 15147270]; Bfa1p complement(462286..464847) Sugiyamaella lignohabitans 30033275 AWJ20_148 CDS KIP1 NC_031672.1 465170 468430 R Kinesin-related motor protein; required for mitotic spindle assembly, chromosome segregation, and 2 micron plasmid partitioning; functionally redundant with Cin8p for chromosomal but not plasmid functions; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 1618910]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IGI] [PMID 1618910]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007019 - microtubule depolymerization [Evidence IMP] [PMID 19041752]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IMP] [PMID 9813090]; GO_process: GO:0030541 - plasmid partitioning [Evidence IMP] [PMID 19364922]; GO_process: GO:0090307 - spindle assembly involved in mitosis [Evidence IMP] [PMID 9813090]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 1618897]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 1618910]; Kip1p complement(465170..468430) Sugiyamaella lignohabitans 30033286 AWJ20_149 CDS CAT5 NC_031672.1 469640 470230 R Protein required for ubiquinone (Coenzyme Q) biosynthesis; localizes to the matrix face of the mitochondrial inner membrane in a large complex with ubiquinone biosynthetic enzymes; required for gluconeogenic gene activation; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9452453]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence ISS] [PMID 11435415]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]; GO_process: GO:0006006 - glucose metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 9452453]; putative monooxygenase CAT5 complement(469640..470230) Sugiyamaella lignohabitans 30033297 AWJ20_150 CDS CNE1 NC_031672.1 472691 474421 D calnexin 472691..474421 Sugiyamaella lignohabitans 30033309 AWJ20_151 CDS BUD3 NC_031672.1 475806 480002 D Protein involved in bud-site selection; required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute an axial landmark for next round of budding; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12972503]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 7730410]; GO_function: GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 2065354]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0032319 - regulation of Rho GTPase activity [Evidence IEA]; GO_process: GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA]; Bud3p 475806..480002 Sugiyamaella lignohabitans 30033320 AWJ20_152 CDS AWJ20_152 NC_031672.1 480361 481695 R uncharacterized protein complement(480361..481695) Sugiyamaella lignohabitans 30033331 AWJ20_153 CDS GSF2 NC_031672.1 488874 489359 R Endoplasmic reticulum (ER) localized integral membrane protein; may promote secretion of certain hexose transporters, including Gal2p; involved in glucose-dependent repression; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 10377429]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 15623581]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 15623581]; GO_process: GO:0034394 - protein localization to cell surface [Evidence IGI,IMP] [PMID 10377429]; Gsf2p complement(488874..489359) Sugiyamaella lignohabitans 30033342 AWJ20_154 CDS RSE1 NC_031672.1 492373 496050 D Protein involved in pre-mRNA splicing; component of the pre-spliceosome; associates with U2 snRNA; involved in ER to Golgi transport; GO_component: GO:0005686 - U2 snRNP [Evidence IPI] [PMID 10369685]; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 15565172]; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 16314500]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0030620 - U2 snRNA binding [Evidence IPI] [PMID 10369685]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 16314500]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI,IMP] [PMID 9819400]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IDA] [PMID 10369685]; Rse1p 492373..496050 Sugiyamaella lignohabitans 30033353 AWJ20_155 CDS PTR3 NC_031672.1 496166 498571 R Component of the SPS plasma membrane amino acid sensor system; senses external amino acid concentration and transmits intracellular signals that result in regulation of expression of amino acid permease genes; other members are Ssy1p, Ptr3p, and Ssy5p; GO_component: GO:0019897 - extrinsic component of plasma membrane [Evidence IDA] [PMID 10409731]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043200 - response to amino acid [Evidence IMP] [PMID 10409731]; Ptr3p complement(496166..498571) Sugiyamaella lignohabitans 30033364 AWJ20_156 CDS APD1 NC_031672.1 499919 500650 R hypothetical protein; required for normal localization of actin patches and for normal tolerance of sodium ions and hydrogen peroxide; localizes to both cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Apd1p complement(499919..500650) Sugiyamaella lignohabitans 30033375 AWJ20_157 CDS AWJ20_157 NC_031672.1 501788 502357 R uncharacterized protein complement(501788..502357) Sugiyamaella lignohabitans 30033386 AWJ20_158 CDS JLP1 NC_031672.1 503259 504443 R Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p complement(503259..504443) Sugiyamaella lignohabitans 30033397 AWJ20_159 CDS SEO1 NC_031672.1 505286 506869 D putative permease SEO1 505286..506869 Sugiyamaella lignohabitans 30033408 AWJ20_160 CDS AWJ20_160 NC_031672.1 507292 508113 D uncharacterized protein 507292..508113 Sugiyamaella lignohabitans 30033420 AWJ20_161 CDS STL1 NC_031672.1 509317 510801 D glucose-inactivated glycerol proton symporter STL1 509317..510801 Sugiyamaella lignohabitans 30033431 AWJ20_162 CDS DCC1 NC_031672.1 511409 512173 R Subunit of a complex with Ctf8p and Ctf18p; shares some components with Replication Factor C; required for sister chromatid cohesion and telomere length maintenance; GO_component: GO:0031390 - Ctf18 RFC-like complex [Evidence IPI] [PMID 11389843]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12482937]; GO_process: GO:0035753 - maintenance of DNA trinucleotide repeats [Evidence IMP] [PMID 21347277]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 11389843]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI] [PMID 17483413]; Dcc1p complement(511409..512173) Sugiyamaella lignohabitans 30033442 AWJ20_163 CDS RAD54 NC_031672.1 512409 515585 D DNA-dependent ATPase that stimulates strand exchange; modifies the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; member of the SWI/SNF family of DNA translocases; forms nuclear foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 12399378]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 10506208]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 10506208]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0032392 - DNA geometric change [Evidence IDA] [PMID 10506208]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 12577053]; GO_process: GO:0045002 - double-strand break repair via single-strand annealing [Evidence IMP] [PMID 8849880]; GO_process: GO:0045003 - double-strand break repair via synthesis-dependent strand annealing [Evidence TAS] [PMID 10357855]; GO_process: GO:0030491 - heteroduplex formation [Evidence IDA] [PMID 10506208]; GO_process: GO:0032079 - positive regulation of endodeoxyribonuclease activity [Evidence IDA] [PMID 19129197]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IMP] [PMID 11238918]; DNA-dependent ATPase RAD54 512409..515585 Sugiyamaella lignohabitans 30033453 AWJ20_164 CDS FAS2 NC_031672.1 515730 521126 R Alpha subunit of fatty acid synthetase; complex catalyzes the synthesis of long-chain saturated fatty acids; contains the acyl-carrier protein domain and beta-ketoacyl reductase, beta-ketoacyl synthase and self-pantetheinylation activities; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 6025308]; GO_component: GO:0005835 - fatty acid synthase complex [Evidence IDA] [PMID 65153]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IDA] [PMID 365179]; GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004312 - fatty acid synthase activity [Evidence IGI] [PMID 10785388]; GO_function: GO:0004312 - fatty acid synthase activity [Evidence IMP] [PMID 65153]; GO_function: GO:0004321 - fatty-acyl-CoA synthase activity [Evidence IEA]; GO_function: GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO_function: GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IGI,IMP] [PMID 10785388]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0042759 - long-chain fatty acid biosynthetic process [Evidence IMP] [PMID 1735446]; GO_process: GO:0009059 - macromolecule biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; trifunctional fatty acid synthase subunit FAS2 complement(515730..521126) Sugiyamaella lignohabitans 30033464 AWJ20_165 CDS GPI8 NC_031672.1 522891 524120 R ER membrane glycoprotein subunit of the GPI transamidase complex; adds glycosylphosphatidylinositol (GPI) anchors to newly synthesized proteins; human PIG-K protein is a functional homolog; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IEA]; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IDA] [PMID 11598210]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8978684]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003923 - GPI-anchor transamidase activity [Evidence IEA]; GO_function: GO:0003923 - GPI-anchor transamidase activity [Evidence IMP] [PMID 10793132]; GO_function: GO:0003923 - GPI-anchor transamidase activity [Evidence IMP] [PMID 11598210]; GO_function: GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IMP] [PMID 11598210]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Gpi8p complement(522891..524120) Sugiyamaella lignohabitans 30033475 AWJ20_166 CDS IRC3 NC_031672.1 525252 527288 D Putative RNA helicase of the DEAH/D-box family; null mutant displays increased levels of spontaneous Rad52p foci; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 10322435]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; Irc3p 525252..527288 Sugiyamaella lignohabitans 30033486 AWJ20_167 CDS AWJ20_167 NC_031672.1 527434 529569 D Zinc transport protein zntB 527434..529569 Sugiyamaella lignohabitans 30033497 AWJ20_168 CDS UBX5 NC_031672.1 529766 531430 R UBX domain-containing protein that interacts with Cdc48p; ubiquitin regulatory X is also known as UBX; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21211725]; Ubx5p complement(529766..531430) Sugiyamaella lignohabitans 30033508 AWJ20_169 CDS TNA1 NC_031672.1 533331 534845 D High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p 533331..534845 Sugiyamaella lignohabitans 30033519 AWJ20_170 CDS AWJ20_170 NC_031672.1 535821 536402 D AAT-domain-containing protein 535821..536402 Sugiyamaella lignohabitans 30033531 AWJ20_171 CDS MRF1 NC_031672.1 537433 538800 R Mitochondrial translation release factor; involved in stop codon recognition and hydrolysis of the peptidyl-tRNA bond during mitochondrial translation; lack of MRF1 causes mitochondrial genome instability; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 1475194]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 8265342]; GO_function: GO:0003747 - translation release factor activity [Evidence IEA]; GO_function: GO:0003747 - translation release factor activity [Evidence IDA] [PMID 10748224]; GO_function: GO:0003747 - translation release factor activity [Evidence IGI] [PMID 1475194]; GO_function: GO:0016149 - translation release factor activity, codon specific [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 14734569]; GO_process: GO:0070126 - mitochondrial translational termination [Evidence IGI] [PMID 1475194]; GO_process: GO:0070126 - mitochondrial translational termination [Evidence IMP] [PMID 15827612]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IMP] [PMID 1475194]; Mrf1p complement(537433..538800) Sugiyamaella lignohabitans 30033542 AWJ20_172 CDS AWJ20_172 NC_031672.1 539360 539953 D uncharacterized protein 539360..539953 Sugiyamaella lignohabitans 30033553 AWJ20_173 CDS DOT1 NC_031672.1 540086 541918 R histone methyltransferase DOT1 complement(540086..541918) Sugiyamaella lignohabitans 30033564 AWJ20_174 CDS GPI10 NC_031672.1 542581 544245 D Integral membrane protein involved in GPI anchor synthesis; putative alpha 1,2 mannosyltransferase required for addition of the third mannose onto the glycosylphosphatidylinositol (GPI) core structure; human PIG-Bp is a functional homolog; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9639537]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004584 - dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity [Evidence IMP] [PMID 9576863]; GO_function: GO:0004584 - dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity [Evidence IMP] [PMID 9639537]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 9759715]; Gpi10p 542581..544245 Sugiyamaella lignohabitans 30033575 AWJ20_175 CDS UNG1 NC_031672.1 544341 545237 R Uracil-DNA glycosylase; required for repair of uracil in DNA formed by spontaneous cytosine deamination; efficiently excises uracil from single-stranded DNA in vivo; not required for strand-specific mismatch repair; cell-cycle regulated, expressed in late G1; localizes to mitochondria and nucleus; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11812822]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 24034606]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11812822]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 24034606]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO_function: GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA,IEA]; GO_function: GO:0004844 - uracil DNA N-glycosylase activity [Evidence IDA] [PMID 2644266]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 1938887]; GO_process: GO:0006284 - base-excision repair [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Ung1p complement(544341..545237) Sugiyamaella lignohabitans 30033586 AWJ20_176 CDS MSS2 NC_031672.1 546078 547541 R Peripherally bound inner membrane protein of the mitochondrial matrix; involved in membrane insertion of C-terminus of Cox2p, interacts genetically and physically with Cox18p; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 11604502]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 11604502]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP] [PMID 11604502]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IGI,IPI] [PMID 11950926]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IPI] [PMID 17452441]; Mss2p complement(546078..547541) Sugiyamaella lignohabitans 30033597 AWJ20_177 CDS SNF2 NC_031672.1 553718 558487 D SWI/SNF catalytic subunit SNF2 553718..558487 Sugiyamaella lignohabitans 30033608 AWJ20_178 CDS INO80 NC_031672.1 564683 569263 D ATPase and nucleosome spacing factor; subunit of complex containing actin and actin-related proteins that has chromatin remodeling activity and 3' to 5' DNA helicase activity in vitro; promotes nucleosome shifts in the 3 prime direction; has a role in modulating stress gene transcription; GO_component: GO:0031011 - Ino80 complex [Evidence IDA] [PMID 10361278]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA,IMP] [PMID 10952318]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 10952318]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 23207916]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 18258182]; GO_process: GO:0043486 - histone exchange [Evidence IDA] [PMID 21241891]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IMP] [PMID 17681272]; GO_process: GO:0016584 - nucleosome positioning [Evidence IDA] [PMID 21135121]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17681272]; GO_process: GO:0051983 - regulation of chromosome segregation [Evidence IMP] [PMID 23207916]; GO_process: GO:0043618 - regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IMP] [PMID 19620280]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IGI] [PMID 23390378]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 10952318]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; chromatin-remodeling ATPase INO80 564683..569263 Sugiyamaella lignohabitans 30033619 AWJ20_179 CDS NPP1 NC_031672.1 570091 572439 D Nucleotide pyrophosphatase/phosphodiesterase; mediates extracellular nucleotide phosphate hydrolysis along with Npp2p and Pho5p; activity and expression enhanced during conditions of phosphate starvation; involved in spore wall assembly; NPP1 has a paralog, NPP2, that arose from the whole genome duplication, and an npp1 npp2 double mutant exhibits reduced dityrosine fluorescence relative to the single mutants; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0035529 - NADH pyrophosphatase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IGI,IMP] [PMID 16278456]; GO_function: GO:0047429 - nucleoside-triphosphate diphosphatase activity [Evidence IDA,IGI,IMP] [PMID 16278456]; GO_function: GO:0004551 - nucleotide diphosphatase activity [Evidence IEA]; GO_function: GO:0004551 - nucleotide diphosphatase activity [Evidence ISS] [PMID 16278456]; GO_function: GO:0004528 - phosphodiesterase I activity [Evidence IEA]; GO_function: GO:0004528 - phosphodiesterase I activity [Evidence ISS] [PMID 16278456]; GO_process: GO:0016036 - cellular response to phosphate starvation [Evidence IEP,IMP] [PMID 16278456]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0009141 - nucleoside triphosphate metabolic process [Evidence IMP] [PMID 16278456]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence ISS] [PMID 16278456]; Npp1p 570091..572439 Sugiyamaella lignohabitans 30033630 AWJ20_180 CDS AWJ20_180 NC_031672.1 572597 574318 R hypothetical protein with low sequence identity to Pdc1p; mRNA identified as translated by ribosome profiling data; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; putative indolepyruvate decarboxylase family protein complement(572597..574318) Sugiyamaella lignohabitans 30033642 AWJ20_181 CDS BET3 NC_031672.1 575899 576312 R Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factors for the GTPase Ypt1, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); hydrophilic homodimeric protein that acts in conjunction with SNARE proteins in targeting and fusion of ER to Golgi transport vesicles; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990070 - TRAPPI protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990072 - TRAPPIII protein complex [Evidence IDA] [PMID 20375281]; GO_component: GO:0033106 - cis-Golgi network membrane [Evidence IDA] [PMID 9564032]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IGI] [PMID 11102533]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IGI] [PMID 17041589]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 17110339]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IMP] [PMID 17287728]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IGI] [PMID 8590804]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 8590804]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; TRAPP complex core subunit BET3 complement(575899..576312) Sugiyamaella lignohabitans 30033653 AWJ20_182 CDS ERG12 NC_031672.1 576947 578164 D Mevalonate kinase; acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA,IEA]; GO_function: GO:0004496 - mevalonate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004496 - mevalonate kinase activity [Evidence IDA] [PMID 16477420]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0010142 - farnesyl diphosphate biosynthetic process, mevalonate pathway [Evidence IMP] [PMID 200835]; GO_process: GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]; GO_process: GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IMP] [PMID 200835]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; mevalonate kinase 576947..578164 Sugiyamaella lignohabitans 30033664 AWJ20_183 CDS FSF1 NC_031672.1 578378 579361 R Putative protein; predicted to be an alpha-isopropylmalate carrier; belongs to the sideroblastic-associated protein family; non-tagged protein is detected in purified mitochondria; likely to play a role in iron homeostasis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Fsf1p complement(578378..579361) Sugiyamaella lignohabitans 30033675 AWJ20_184 CDS GUA1 NC_031672.1 580465 582048 R GMP synthase; highly conserved enzyme that catalyzes the second step in the biosynthesis of GMP from inosine 5'-phosphate (IMP); transcription is not subject to regulation by guanine but is negatively regulated by nutrient starvation; reduction-of-function mutation gua1-G388D causes changes in cellular guanine nucleotide pools, defects in general protein synthesis, and impaired translation of GCN4 mRNA; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA,IEA]; GO_function: GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IMP,ISS] [PMID 8112582]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016462 - pyrophosphatase activity [Evidence IEA]; GO_process: GO:0006177 - GMP biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006177 - GMP biosynthetic process [Evidence IMP] [PMID 20980241]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA]; GMP synthase (glutamine-hydrolyzing) complement(580465..582048) Sugiyamaella lignohabitans 30033686 AWJ20_185 CDS RAM2 NC_031672.1 582904 583980 D Alpha subunit of farnesyltransferase and geranylgeranyltransferase-I; farnesyltransferase (RAM2-RAM1 heterodimer) catalyzes the addition of 15-carbon isoprenoid farnesyl to substrate proteins containing a CAAX consensus motif; type I geranylgeranyltransferase (RAM2-CDC43 heterodimer) catalyzes the addition of the 20-carbon isoprenoid geranylgeranyl to substrate proteins containing a CaaL consensus motif; required for membrane localization of Ras proteins and a-factor; GO_component: GO:0005953 - CAAX-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 1400380]; GO_component: GO:0005965 - protein farnesyltransferase complex [Evidence IDA] [PMID 1763050]; GO_function: GO:0004662 - CAAX-protein geranylgeranyltransferase activity [Evidence IEA]; GO_function: GO:0004662 - CAAX-protein geranylgeranyltransferase activity [Evidence IDA] [PMID 1400380]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IEA]; GO_function: GO:0004660 - protein farnesyltransferase activity [Evidence IEA]; GO_function: GO:0004660 - protein farnesyltransferase activity [Evidence IDA] [PMID 1763050]; GO_function: GO:0004661 - protein geranylgeranyltransferase activity [Evidence IDA] [PMID 2034682]; GO_function: GO:0008318 - protein prenyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0007323 - peptide pheromone maturation [Evidence IDA] [PMID 1763050]; GO_process: GO:0018343 - protein farnesylation [Evidence IDA] [PMID 1763050]; GO_process: GO:0018344 - protein geranylgeranylation [Evidence IDA] [PMID 1400380]; GO_process: GO:0018342 - protein prenylation [Evidence IEA]; bifunctional protein farnesyltransferase/protein geranylgeranyltransferase 582904..583980 Sugiyamaella lignohabitans 30033697 AWJ20_186 CDS CHA1 NC_031672.1 584733 585803 R Catabolic L-serine (L-threonine) deaminase; catalyzes the degradation of both L-serine and L-threonine; required to use serine or threonine as the sole nitrogen source, transcriptionally induced by serine and threonine; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]; GO_function: GO:0003941 - L-serine ammonia-lyase activity [Evidence IDA] [PMID 7042346]; GO_function: GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA]; GO_function: GO:0004794 - L-threonine ammonia-lyase activity [Evidence IDA] [PMID 7042346]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0006565 - L-serine catabolic process [Evidence IGI] [PMID 7042346]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006567 - threonine catabolic process [Evidence IGI] [PMID 7042346]; L-serine/L-threonine ammonia-lyase CHA1 complement(584733..585803) Sugiyamaella lignohabitans 30033708 AWJ20_187 CDS NOG1 NC_031672.1 587294 589237 R Putative GTPase; associates with free 60S ribosomal subunits in the nucleolus and is required for 60S ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; member of the ODN family of nucleolar G-proteins; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11112701]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 16861225]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISS] [PMID 11112701]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12773575]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IDA] [PMID 16888624]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 17443350]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IMP,IPI] [PMID 12773575]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nog1p complement(587294..589237) Sugiyamaella lignohabitans 30033719 AWJ20_188 CDS AWJ20_188 NC_031672.1 591808 592320 D uncharacterized protein 591808..592320 Sugiyamaella lignohabitans 30033730 AWJ20_189 CDS CMR3 NC_031672.1 592836 594251 R Putative zinc finger protein; YPR013C is not an essential gene; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 23012409]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0008150 - biological_process [Evidence ND]; Cmr3p complement(592836..594251) Sugiyamaella lignohabitans 30033741 AWJ20_190 CDS AWJ20_190 NC_031672.1 599111 600202 D histone N-acetyltransferase (predicted) 599111..600202 Sugiyamaella lignohabitans 30033753 AWJ20_191 CDS MNN9 NC_031672.1 607793 608863 D Subunit of Golgi mannosyltransferase complex; this complex mediates elongation of the polysaccharide mannan backbone; forms a separate complex with Van1p that is also involved in backbone elongation; this complex also contains Anp1p, Mnn10p, Mnn11p, and Hoc1p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 9430634]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 19249370]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 9430634]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IDA] [PMID 19249370]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IDA] [PMID 9430634]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; mannosyltransferase complex subunit MNN9 607793..608863 Sugiyamaella lignohabitans 30033763 AWJ20_192 CDS EMP24 NC_031672.1 610869 611369 D Component of the p24 complex; role in misfolded protein quality control; binds to GPI anchor proteins and mediates their efficient transport from the ER to the Golgi; integral membrane protein that associates with endoplasmic reticulum-derived COPII-coated vesicles; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8862519]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 8862519]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8862519]; GO_process: GO:0006621 - protein retention in ER lumen [Evidence IMP] [PMID 8862519]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016050 - vesicle organization [Evidence IGI,IMP] [PMID 8862519]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Emp24p 610869..611369 Sugiyamaella lignohabitans 30033774 AWJ20_193 CDS THI73 NC_031672.1 619707 621299 R Putative plasma membrane permease; proposed to be involved in carboxylic acid uptake and repressed by thiamine; substrate of Dbf2p/Mob1p kinase; transcription is altered if mitochondrial dysfunction occurs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16850348]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 10869563]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 10869563]; Thi73p complement(619707..621299) Sugiyamaella lignohabitans 30033785 AWJ20_194 CDS EPL1 NC_031672.1 625900 628782 D Subunit of NuA4, an essential histone H4/H2A acetyltransferase complex; conserved region at N-terminus is essential for interaction with the NPC (nucleosome core particle); required for autophagy; homologous to Drosophila Enhancer of Polycomb; coding sequence contains length polymorphisms in different strains; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IEA]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0032777 - Piccolo NuA4 histone acetyltransferase complex [Evidence IEA]; GO_component: GO:0032777 - Piccolo NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 12782659]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 10911987]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 17274630]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 15610740]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10911987]; GO_process: GO:0016239 - positive regulation of macroautophagy [Evidence IMP] [PMID 22539722]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 10911987]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Epl1p 625900..628782 Sugiyamaella lignohabitans 30033796 AWJ20_195 CDS CAM1 NC_031672.1 630824 631774 D Nuclear protein required for transcription of MXR1; binds the MXR1 promoter in the presence of other nuclear factors; binds calcium and phospholipids; has similarity to translational cofactor EF-1 gamma; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005853 - eukaryotic translation elongation factor 1 complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12824466]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 8465602]; GO_function: GO:0005543 - phospholipid binding [Evidence IDA] [PMID 8465602]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IMP] [PMID 12824466]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA,IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12824466]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IGI] [PMID 8041634]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA,IEA]; Cam1p 630824..631774 Sugiyamaella lignohabitans 30033807 AWJ20_196 CDS AWJ20_196 NC_031672.1 632487 634517 R uncharacterized protein complement(632487..634517) Sugiyamaella lignohabitans 30033818 AWJ20_197 CDS LTE1 NC_031672.1 637237 640779 R mitotic regulator LTE1 complement(637237..640779) Sugiyamaella lignohabitans 30033829 AWJ20_198 CDS AWJ20_198 NC_031672.1 643165 644724 R uncharacterized protein complement(643165..644724) Sugiyamaella lignohabitans 30033840 AWJ20_199 CDS BUD6 NC_031672.1 646449 649100 D Actin- and formin-interacting protein; participates in actin cable assembly and organization as a nucleation-promoting factor (NPF) for formins Bni1p and Bnr1p; a triple helical coiled-coil domain in the C-terminal region interacts with Bni1p; involved in polarized cell growth; isolated as bipolar budding mutant; potential Cdc28p substrate; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11071900]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 23671312]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9247651]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11071900]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 23671312]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 9247651]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11071900]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9247651]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9082982]; GO_component: GO:0000133 - polarisome [Evidence IDA] [PMID 9632790]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 17416900]; GO_function: GO:0003779 - actin binding [Evidence IDA] [PMID 7719850]; GO_function: GO:0003779 - actin binding [Evidence IDA] [PMID 9247651]; GO_function: GO:0005519 - cytoskeletal regulatory protein binding [Evidence IPI] [PMID 15923184]; GO_function: GO:0005519 - cytoskeletal regulatory protein binding [Evidence IDA] [PMID 9082982]; GO_function: GO:0008047 - enzyme activator activity [Evidence IMP] [PMID 23671312]; GO_process: GO:0051017 - actin filament bundle assembly [Evidence IGI,IMP] [PMID 23671312]; GO_process: GO:0030953 - astral microtubule organization [Evidence IMP] [PMID 22608510]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 8657162]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 9247651]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 10866679]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 9247651]; GO_process: GO:0034652 - extrachromosomal circular DNA localization involved in cell aging [Evidence IMP] [PMID 18660802]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IGI,IMP] [PMID 17237521]; GO_process: GO:0090338 - positive regulation of formin-nucleated actin cable assembly [Evidence IDA,IGI] [PMID 14657240]; GO_process: GO:0090338 - positive regulation of formin-nucleated actin cable assembly [Evidence IDA] [PMID 15923184]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 24603354]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 10085294]; Bud6p 646449..649100 Sugiyamaella lignohabitans 30033851 AWJ20_200 CDS EST2 NC_031672.1 649389 652592 R Reverse transcriptase subunit of the telomerase holoenzyme; essential for telomerase core catalytic activity, involved in other aspects of telomerase assembly and function; mutations in human homolog are associated with aplastic anemia; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12101098]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12101098]; GO_component: GO:0000333 - telomerase catalytic core complex [Evidence IDA,IPI] [PMID 15813705]; GO_component: GO:0005697 - telomerase holoenzyme complex [Evidence IDA,IPI] [PMID 10898986]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0003720 - telomerase activity [Evidence IDA] [PMID 15813705]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IDA] [PMID 17656141]; GO_function: GO:0003721 - telomeric template RNA reverse transcriptase activity [Evidence IEA]; GO_function: GO:0003721 - telomeric template RNA reverse transcriptase activity [Evidence TAS] [PMID 11884619]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IGI] [PMID 18627461]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IDA,IMP] [PMID 15813705]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IMP] [PMID 8978029]; Est2p complement(649389..652592) Sugiyamaella lignohabitans 30033864 AWJ20_201 CDS SFH1 NC_031672.1 652819 653895 D Component of the RSC chromatin remodeling complex; essential gene required for cell cycle progression and maintenance of proper ploidy; phosphorylated in the G1 phase of the cell cycle; Snf5p paralog; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 9154831]; GO_component: GO:0000228 - nuclear chromosome [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 12183366]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 17542652]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 9154831]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0031055 - chromatin remodeling at centromere [Evidence IMP] [PMID 12697820]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI] [PMID 12697820]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 16024655]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0033262 - regulation of nuclear cell cycle DNA replication [Evidence IGI] [PMID 17542652]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sfh1p 652819..653895 Sugiyamaella lignohabitans 30033875 AWJ20_202 CDS DSE1 NC_031672.1 655692 657173 D Daughter cell-specific protein; may regulate cross-talk between the mating and filamentation pathways; deletion affects cell separation after division and sensitivity to alpha-factor and drugs affecting the cell wall; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 11309124]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 19820940]; GO_process: GO:0010969 - regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 19820940]; Dse1p 655692..657173 Sugiyamaella lignohabitans 30033886 AWJ20_203 CDS EAF3 NC_031672.1 657634 658689 R Component of the Rpd3S histone deacetylase complex; Esa1p-associated factor, nonessential component of the NuA4 acetyltransferase complex, homologous to Drosophila dosage compensation protein MSL3; plays a role in regulating Ty1 transposition; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0032221 - Rpd3S complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0032221 - Rpd3S complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA] [PMID 11036083]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 11036083]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 11036083]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP] [PMID 16286007]; GO_process: GO:0060195 - negative regulation of antisense RNA transcription [Evidence IMP] [PMID 21248844]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IMP] [PMID 16364921]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 19417103]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11036083]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 19948887]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Eaf3p complement(657634..658689) Sugiyamaella lignohabitans 30033896 AWJ20_204 CDS BNA4 NC_031672.1 659107 660621 D Kynurenine 3-mono oxygenase; required for the de novo biosynthesis of NAD from tryptophan via kynurenine; expression regulated by Hst1p; putative therapeutic target for Huntington disease; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004502 - kynurenine 3-monooxygenase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004502 - kynurenine 3-monooxygenase activity [Evidence IMP] [PMID 15806102]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IGI] [PMID 12062417]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA]; GO_process: GO:0043420 - anthranilate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0019805 - quinolinate biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA,IEA]; kynurenine 3-monooxygenase 659107..660621 Sugiyamaella lignohabitans 30033907 AWJ20_205 CDS SWC4 NC_031672.1 662932 665021 R Component of the Swr1p complex that incorporates Htz1p into chromatin; component of the NuA4 histone acetyltransferase complex; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IEA]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15353583]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IPI] [PMID 12672825]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence ISS] [PMID 14690591]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IPI] [PMID 12672825]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0006338 - chromatin remodeling [Evidence IPI] [PMID 14690608]; GO_process: GO:0051276 - chromosome organization [Evidence IMP] [PMID 18439903]; GO_process: GO:0043968 - histone H2A acetylation [Evidence IEA]; GO_process: GO:0043967 - histone H4 acetylation [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IPI] [PMID 14690591]; GO_process: GO:0043486 - histone exchange [Evidence IPI] [PMID 16299513]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Swc4p complement(join(662932..664601,664919..665021)) Sugiyamaella lignohabitans 30033918 AWJ20_206 CDS YTM1 NC_031672.1 665452 666810 D Constituent of 66S pre-ribosomal particles; forms a complex with Nop7p and Erb1p that is required for maturation of the large ribosomal subunit; has seven C-terminal WD repeats; GO_component: GO:0070545 - PeBoW complex [Evidence IDA,IPI] [PMID 16287855]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11583614]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0043021 - ribonucleoprotein complex binding [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IGI] [PMID 10454593]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IPI] [PMID 15100437]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Ytm1p 665452..666810 Sugiyamaella lignohabitans 30033929 AWJ20_207 CDS GFA1 NC_031672.1 667298 670910 R Glutamine-fructose-6-phosphate amidotransferase; catalyzes the formation of glucosamine-6-P and glutamate from fructose-6-P and glutamine in the first step of chitin biosynthesis; GFA1 has a paralogous region, comprising ORFs YMR084W-YMR085W, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA,IEA]; GO_function: GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IDA] [PMID 2656689]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IEA]; GO_process: GO:0016051 - carbohydrate biosynthetic process [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IGI] [PMID 11895440]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; glutamine--fructose-6-phosphate transaminase (isomerizing) GFA1 complement(join(667298..669304,670842..670910)) Sugiyamaella lignohabitans 30033940 AWJ20_208 CDS BSC6 NC_031672.1 674142 675548 R hypothetical protein with 8 putative transmembrane segments; ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Bsc6p complement(674142..675548) Sugiyamaella lignohabitans 30033951 AWJ20_210 CDS ABP140 NC_031672.1 676544 677500 D AdoMet-dependent tRNA methyltransferase and actin binding protein; C-terminal domain is responsible for 3-methylcytidine modification of residue 32 of the tRNA anticodon loop of tRNA-Thr and tRNA-Ser and contains an S-adenosylmethionine (AdoMet) binding motif; N-terminal actin binding sequence interacts with actin filaments and localizes to actin patches and cables; N- and C-terminal domains are encoded in separate ORFs that are translated into one protein via a +1 frameshift; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 9467951]; GO_component: GO:0005884 - actin filament [Evidence IDA] [PMID 9467951]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 11805329]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 9467951]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 9467951]; GO_function: GO:0052735 - tRNA (cytosine-3-)-methyltransferase activity [Evidence IDA,IMP] [PMID 21518804]; GO_function: GO:0052735 - tRNA (cytosine-3-)-methyltransferase activity [Evidence IDA] [PMID 21518805]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0051017 - actin filament bundle assembly [Evidence IDA] [PMID 9467951]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IMP] [PMID 21518804]; GO_process: GO:0030488 - tRNA methylation [Evidence IMP] [PMID 21518805]; Abp140p 676544..677500 Sugiyamaella lignohabitans 30033974 AWJ20_211 CDS ENV9 NC_031672.1 677531 678349 R Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p complement(677531..678349) Sugiyamaella lignohabitans 30033985 AWJ20_212 CDS AWJ20_212 NC_031672.1 680825 682444 R Kinesin-like protein complement(join(680825..681416,681564..682444)) Sugiyamaella lignohabitans 30033996 AWJ20_213 CDS AWJ20_213 NC_031672.1 683097 684227 R Glyoxylate reductase; acts on glyoxylate and hydroxypyruvate substrates; YPL113C is not an essential gene; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IMP] [PMID 17173333]; GO_process: GO:0008152 - metabolic process [Evidence IMP] [PMID 17173333]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glyoxylate reductase complement(683097..684227) Sugiyamaella lignohabitans 30034007 AWJ20_214 CDS AWJ20_214 NC_031672.1 684631 685875 R uncharacterized protein complement(684631..685875) Sugiyamaella lignohabitans 30034018 AWJ20_215 CDS tam14 NC_031672.1 688654 689403 R top hit is XP_002839470.1 originated in Tuber melanosporum Mel28; conserved fungal protein; uncharacterized protein complement(688654..689403) Sugiyamaella lignohabitans 30034029 AWJ20_216 CDS NOC3 NC_031672.1 689818 691890 D Subunit of a nuclear complex with Noc2p and pre-replicative complexes; the Noc2p-Noc3p complex binds to 66S ribosomal precursors to mediate their maturation and intranuclear transport; binds to chromatin at active replication origins, and is required for pre-RC formation and maintenance during DNA replication licensing; GO_component: GO:0030691 - Noc2p-Noc3p complex [Evidence IPI] [PMID 11371346]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 22421151]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11371346]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 11371346]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12110182]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12110182]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IDA] [PMID 12110182]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 22421151]; GO_process: GO:0006364 - rRNA processing [Evidence IDA] [PMID 12110182]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Noc3p 689818..691890 Sugiyamaella lignohabitans 30034040 AWJ20_217 CDS AWJ20_217 NC_031672.1 695480 696115 D uncharacterized protein 695480..696115 Sugiyamaella lignohabitans 30034051 AWJ20_218 CDS AWJ20_218 NC_031672.1 696333 697175 D uncharacterized protein 696333..697175 Sugiyamaella lignohabitans 30034062 AWJ20_219 CDS AWJ20_219 NC_031672.1 697550 699979 D uncharacterized protein 697550..699979 Sugiyamaella lignohabitans 30034073 AWJ20_220 CDS AWJ20_220 NC_031672.1 706765 707160 D DNA-binding protein C1D 706765..707160 Sugiyamaella lignohabitans 30034085 AWJ20_221 CDS AWJ20_221 NC_031672.1 708488 709039 D uncharacterized protein 708488..709039 Sugiyamaella lignohabitans 30034096 AWJ20_222 CDS PEX3 NC_031672.1 710428 711885 R Peroxisomal membrane protein (PMP); required for proper localization and stability of PMPs; anchors peroxisome retention factor Inp1p at the peroxisomal membrane; interacts with Pex19p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16009135]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 1894692]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 23900285]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 9418908]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP] [PMID 23900285]; GO_process: GO:0032581 - ER-dependent peroxisome organization [Evidence IDA] [PMID 17646399]; GO_process: GO:0032581 - ER-dependent peroxisome organization [Evidence IMP] [PMID 20427571]; GO_process: GO:0045033 - peroxisome inheritance [Evidence IMP] [PMID 19948495]; GO_process: GO:0007031 - peroxisome organization [Evidence IEA]; GO_process: GO:0045046 - protein import into peroxisome membrane [Evidence IMP] [PMID 10637226]; Pex3p complement(710428..711885) Sugiyamaella lignohabitans 30034107 AWJ20_223 CDS AWJ20_223 NC_031672.1 713600 714892 D uncharacterized protein 713600..714892 Sugiyamaella lignohabitans 30034118 AWJ20_224 CDS PCD1 NC_031672.1 715148 715918 R 8-oxo-dGTP diphosphatase; prevents spontaneous mutagenesis via sanitization of oxidized purine nucleoside triphosphates; can also act as peroxisomal pyrophosphatase with specificity for coenzyme A and CoA derivatives, may function to remove potentially toxic oxidized CoA disulfide from peroxisomes to maintain the capacity for beta-oxidation of fatty acids; nudix hydrolase family member; similar E. coli MutT and human, rat and mouse MTH1; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 10922370]; GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity [Evidence IDA,IMP] [PMID 15475388]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016462 - pyrophosphatase activity [Evidence IDA] [PMID 10922370]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15475388]; GO_process: GO:0009132 - nucleoside diphosphate metabolic process [Evidence IEA]; Pcd1p complement(715148..715918) Sugiyamaella lignohabitans 30034129 AWJ20_225 CDS AWJ20_225 NC_031672.1 716670 719402 R uncharacterized protein complement(716670..719402) Sugiyamaella lignohabitans 30034140 AWJ20_226 CDS SAT4 NC_031672.1 726023 728335 D serine/threonine protein kinase SAT4 726023..728335 Sugiyamaella lignohabitans 30034151 AWJ20_227 CDS RVS161 NC_031672.1 733058 733846 D Amphiphysin-like lipid raft protein; interacts with Rvs167p and regulates polarization of the actin cytoskeleton, endocytosis, cell polarity, cell fusion and viability following starvation or osmotic stress; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 16239147]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005937 - mating projection [Evidence IDA] [PMID 9566960]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 12477802]; GO_function: GO:0008092 - cytoskeletal protein binding [Evidence IPI,ISS] [PMID 10388809]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20610658]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IMP] [PMID 8590801]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 7891662]; GO_process: GO:0031532 - actin cytoskeleton reorganization [Evidence IMP] [PMID 7891662]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 11096097]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0060988 - lipid tube assembly [Evidence IDA] [PMID 20610658]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 1776363]; GO_process: GO:0042594 - response to starvation [Evidence IMP] [PMID 1776363]; amphiphysin-like protein RVS161 733058..733846 Sugiyamaella lignohabitans 30034162 AWJ20_228 CDS AWJ20_228 NC_031672.1 735245 735589 R uncharacterized protein complement(735245..735589) Sugiyamaella lignohabitans 30034173 AWJ20_229 CDS AWJ20_229 NC_031672.1 738444 740516 R uncharacterized protein complement(738444..740516) Sugiyamaella lignohabitans 30034184 AWJ20_231 CDS LYS14 NC_031672.1 741283 742779 R Transcriptional activator involved in regulating lysine biosynthesis; involved in the regulation of genes of the lysine biosynthesis pathway; requires 2-aminoadipate semialdehyde as co-inducer; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10975256]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9701810]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence ISA] [PMID 7935367]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA]; GO_process: GO:2001196 - positive regulation of lysine biosynthetic process via alpha-aminoadipate and saccharopine [Evidence IMP] [PMID 3123231]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 11952910]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3123231]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 7935367]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Lys14p complement(741283..742779) Sugiyamaella lignohabitans 30034207 AWJ20_234 CDS AVL9 NC_031672.1 745451 748096 D Conserved protein involved in exocytic transport from the Golgi; mutation is synthetically lethal with apl2 vps1 double mutation; member of a protein superfamily with orthologs in diverse organisms; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IMP] [PMID 17229886]; Avl9p 745451..748096 Sugiyamaella lignohabitans 30034240 AWJ20_235 CDS AVL9 NC_031672.1 748317 749018 D Conserved protein involved in exocytic transport from the Golgi; mutation is synthetically lethal with apl2 vps1 double mutation; member of a protein superfamily with orthologs in diverse organisms; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IMP] [PMID 17229886]; Avl9p 748317..749018 Sugiyamaella lignohabitans 30034251 AWJ20_236 CDS RGP1 NC_031672.1 749142 751544 R Subunit of a Golgi membrane exchange factor (Ric1p-Rgp1p); this complex catalyzes nucleotide exchange on Ypt6p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 10990452]; GO_component: GO:0000139 - Golgi membrane [Evidence IPI] [PMID 10990452]; GO_component: GO:0034066 - RIC1-RGP1 guanyl-nucleotide exchange factor complex [Evidence IPI] [PMID 10990452]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 10990452]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA,IPI] [PMID 10990452]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0043087 - regulation of GTPase activity [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 10990452]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IMP] [PMID 11082047]; Rgp1p complement(749142..751544) Sugiyamaella lignohabitans 30034262 AWJ20_237 CDS RRP45 NC_031672.1 752076 753038 R Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp45p (PM/SCL-75, EXOSC9); protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16541108]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034473 - U1 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10508172]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10465791]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IC] [PMID 10465791]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; exosome non-catalytic core subunit RRP45 complement(752076..753038) Sugiyamaella lignohabitans 30034273 AWJ20_238 CDS TPO1 NC_031672.1 753396 755045 R Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p complement(753396..755045) Sugiyamaella lignohabitans 30034284 AWJ20_239 CDS ERG10 NC_031672.1 759571 760761 D Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase); cytosolic enzyme that transfers an acetyl group from one acetyl-CoA molecule to another, forming acetoacetyl-CoA; involved in the first step in mevalonate biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 5571830]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]; GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IDA] [PMID 7989303]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; acetyl-CoA C-acetyltransferase 759571..760761 Sugiyamaella lignohabitans 30034295 AWJ20_240 CDS AWJ20_240 NC_031672.1 760146 760397 R uncharacterized protein complement(760146..760397) Sugiyamaella lignohabitans 30034307 AWJ20_241 CDS RPN10 NC_031672.1 761087 761872 R Non-ATPase base subunit of the 19S RP of the 26S proteasome; N-terminus plays a role in maintaining the structural integrity of the regulatory particle (RP); binds selectively to polyubiquitin chains; homolog of the mammalian S5a protein; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IMP] [PMID 15242647]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IPI] [PMID 15907469]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0031593 - polyubiquitin binding [Evidence IDA] [PMID 8887631]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 9741626]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15242647]; proteasome regulatory particle base subunit RPN10 complement(761087..761872) Sugiyamaella lignohabitans 30034318 AWJ20_242 CDS MRPL23 NC_031672.1 764320 764739 R Mitochondrial ribosomal protein of the large subunit; localizes to vacuole in response to H2O2; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23509072]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL23 complement(764320..764739) Sugiyamaella lignohabitans 30034329 AWJ20_243 CDS MET5 NC_031672.1 765304 769746 R Sulfite reductase beta subunit; involved in amino acid biosynthesis, transcription repressed by methionine; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0009337 - sulfite reductase complex (NADPH) [Evidence IDA] [PMID 6751400]; GO_component: GO:0009337 - sulfite reductase complex (NADPH) [Evidence IDA] [PMID 9003798]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004783 - sulfite reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0004783 - sulfite reductase (NADPH) activity [Evidence IDA] [PMID 6751400]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA]; GO_process: GO:0070814 - hydrogen sulfide biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0000103 - sulfate assimilation [Evidence IMP] [PMID 19236486]; GO_process: GO:0000097 - sulfur amino acid biosynthetic process [Evidence IMP] [PMID 1479340]; sulfite reductase (NADPH) subunit beta complement(join(765304..769658,769725..769746)) Sugiyamaella lignohabitans 30034340 AWJ20_244 CDS AWJ20_244 NC_031672.1 771439 772680 D uncharacterized protein 771439..772680 Sugiyamaella lignohabitans 30034351 AWJ20_245 CDS AWJ20_245 NC_031672.1 773653 775821 D Neurospora crassa e-Compendium ncu01765.3; NADH:ubiquinone oxidoreductase 78kD subunit 773653..775821 Sugiyamaella lignohabitans 30034362 AWJ20_246 CDS SPS19 NC_031672.1 778393 779268 D Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 778393..779268 Sugiyamaella lignohabitans 30034373 AWJ20_248 CDS POX1 NC_031672.1 779945 780619 D Fatty-acyl coenzyme A oxidase; involved in the fatty acid beta-oxidation pathway; localized to the peroxisomal matrix; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 11967269]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA,IEA]; GO_function: GO:0003995 - acyl-CoA dehydrogenase activity [Evidence IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence IEA,IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence ISA] [PMID 2189786]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12819196]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence IEA]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence ISA] [PMID 2189786]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; acyl-CoA oxidase 779945..780619 Sugiyamaella lignohabitans 30034395 AWJ20_249 CDS POX1 NC_031672.1 780800 782134 D Fatty-acyl coenzyme A oxidase; involved in the fatty acid beta-oxidation pathway; localized to the peroxisomal matrix; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 11967269]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA,IEA]; GO_function: GO:0003995 - acyl-CoA dehydrogenase activity [Evidence IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence IEA,IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence ISA] [PMID 2189786]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12819196]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence IEA]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence ISA] [PMID 2189786]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; acyl-CoA oxidase 780800..782134 Sugiyamaella lignohabitans 30034406 AWJ20_250 CDS AWJ20_250 NC_031672.1 782876 783643 D uncharacterized protein 782876..783643 Sugiyamaella lignohabitans 30034418 AWJ20_251 CDS HOL1 NC_031672.1 783732 784652 R Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p complement(783732..784652) Sugiyamaella lignohabitans 30034429 AWJ20_252 CDS AWJ20_252 NC_031672.1 785009 785449 R uncharacterized protein complement(785009..785449) Sugiyamaella lignohabitans 30034440 AWJ20_253 CDS CDC43 NC_031672.1 786833 787966 D Beta subunit of geranylgeranyltransferase type I; catalyzes geranylgeranylation to the cysteine residue in proteins containing a C-terminal CaaX sequence ending in Leu or Phe; has substrates important for morphogenesis; GO_component: GO:0005953 - CAAX-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 1400380]; GO_component: GO:0005622 - intracellular [Evidence TAS] [PMID 9891811]; GO_function: GO:0004662 - CAAX-protein geranylgeranyltransferase activity [Evidence IEA]; GO_function: GO:0004662 - CAAX-protein geranylgeranyltransferase activity [Evidence IDA] [PMID 1400380]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IEA]; GO_function: GO:0004661 - protein geranylgeranyltransferase activity [Evidence IDA] [PMID 10066831]; GO_function: GO:0004661 - protein geranylgeranyltransferase activity [Evidence IDA] [PMID 2034682]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence TAS] [PMID 9891811]; GO_process: GO:0030010 - establishment of cell polarity [Evidence TAS] [PMID 9891811]; GO_process: GO:0018344 - protein geranylgeranylation [Evidence IDA] [PMID 2034682]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence TAS] [PMID 9891811]; protein geranylgeranyltransferase type I subunit CDC43 786833..787966 Sugiyamaella lignohabitans 30034451 AWJ20_255 CDS RNT1 NC_031672.1 790117 791385 D Nuclear dsRNA-specific ribonuclease (RNase III); involved in rDNA transcription, rRNA processing and U2 snRNA 3' end formation by cleavage of a stem-loop structure at the 3' end of U2 snRNA; involved in polyadenylation-independent transcription termination; involved in the cell wall stress response, regulating the degradation of cell wall integrity and morphogenesis checkpoint genes; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15090619]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15090619]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IEA,IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IDA] [PMID 15766245]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0034473 - U1 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034963 - box C/D snoRNA processing [Evidence IMP] [PMID 23201338]; GO_process: GO:0034964 - box H/ACA snoRNA processing [Evidence IMP] [PMID 23201338]; GO_process: GO:0006325 - chromatin organization [Evidence IMP] [PMID 17991894]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA,IMP] [PMID 17158880]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 17991894]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 17991894]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 22576366]; GO_process: GO:0030847 - termination of RNA polymerase II transcription, exosome-dependent [Evidence IDA,IMP,IPI] [PMID 19818713]; Rnt1p 790117..791385 Sugiyamaella lignohabitans 30034473 AWJ20_256 CDS IES6 NC_031672.1 791751 792131 D Component of the INO80 chromatin remodeling complex; critical for INO80 function; involved in regulation of chromosome segregation and maintenance of normal centromeric chromatin structure; human ortholog INO80C is a member of the human INO80 complex; implicated in DNA repair based on genetic interactions with RAD52 epistasis genes; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 23207916]; GO_process: GO:0051983 - regulation of chromosome segregation [Evidence IMP] [PMID 23207916]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ies6p 791751..792131 Sugiyamaella lignohabitans 30034484 AWJ20_257 CDS TAD3 NC_031672.1 796540 797376 R Subunit of tRNA-specific adenosine-34 deaminase; forms a heterodimer with Tad2p that converts adenosine to inosine at the wobble position of several tRNAs; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008251 - tRNA-specific adenosine deaminase activity [Evidence IDA] [PMID 10550050]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 10550050]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Tad3p complement(796540..797376) Sugiyamaella lignohabitans 30034495 AWJ20_258 CDS SOD1 NC_031672.1 803537 804172 R Cytosolic copper-zinc superoxide dismutase; detoxifies superoxide; stabilizes Yck1p and Yck2p kinases in glucose to repress respiration; phosphorylated by Dun1p and enters the nucleus under oxidative stress to promote transcription of stress response genes; human ortholog implicated in ALS; abundance increases under DNA replication stress and during exposure to boric acid; localization of a fraction to the mitochondrial intermembrane space is modulated by the MICOS complex; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11500508]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 11500508]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18977757]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 24647101]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA]; GO_function: GO:0005507 - copper ion binding [Evidence IBA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004784 - superoxide dismutase activity [Evidence IEA,IEA]; GO_function: GO:0004784 - superoxide dismutase activity [Evidence IDA] [PMID 3290902]; GO_function: GO:0008270 - zinc ion binding [Evidence IBA]; GO_process: GO:0001320 - age-dependent response to reactive oxygen species involved in chronological cell aging [Evidence IMP] [PMID 8647826]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 8530401]; GO_process: GO:0006882 - cellular zinc ion homeostasis [Evidence IMP] [PMID 11581253]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 20176017]; GO_process: GO:1901856 - negative regulation of cellular respiration [Evidence IMP] [PMID 23332757]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0051091 - positive regulation of sequence-specific DNA binding transcription factor activity [Evidence IMP] [PMID 18977757]; GO_process: GO:0036091 - positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress [Evidence IMP] [PMID 24647101]; GO_process: GO:0050821 - protein stabilization [Evidence IMP,IPI] [PMID 23332757]; GO_process: GO:0019430 - removal of superoxide radicals [Evidence IBA]; GO_process: GO:0006801 - superoxide metabolic process [Evidence IEA]; GO_process: GO:0006801 - superoxide metabolic process [Evidence IMP] [PMID 3290902]; superoxide dismutase SOD1 complement(803537..804172) Sugiyamaella lignohabitans 30034506 AWJ20_259 CDS AWJ20_259 NC_031672.1 807445 808455 D Pc12g14970 807445..808455 Sugiyamaella lignohabitans 30034517 AWJ20_260 CDS AWJ20_260 NC_031672.1 809303 809662 R uncharacterized protein complement(809303..809662) Sugiyamaella lignohabitans 30034529 AWJ20_261 CDS TUS1 NC_031672.1 809308 812684 D Rho family guanine nucleotide exchange factor TUS1 join(809308..812348,812447..812684) Sugiyamaella lignohabitans 30034540 AWJ20_262 CDS ROM2 NC_031672.1 812875 814602 D Rho family guanine nucleotide exchange factor ROM2 812875..814602 Sugiyamaella lignohabitans 30034551 AWJ20_263 CDS AWJ20_263 NC_031672.1 816386 816766 R uncharacterized protein complement(816386..816766) Sugiyamaella lignohabitans 30034562 AWJ20_264 CDS MAG2 NC_031672.1 818272 820653 D Cytoplasmic hypothetical protein; induced in response to mycotoxin patulin; ubiquitinated protein similar to the human ring finger motif protein RNF10; predicted to be involved in repair of alkylated DNA due to interaction with MAG1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mag2p 818272..820653 Sugiyamaella lignohabitans 30034573 AWJ20_265 CDS CRN1 NC_031672.1 820839 822593 R Coronin; cortical actin cytoskeletal component that associates with the Arp2p/Arp3p complex to regulate its activity; plays a role in regulation of actin patch assembly; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA,IPI] [PMID 12499356]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 9822583]; GO_component: GO:0005826 - actomyosin contractile ring [Evidence IBA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 9885246]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 9885246]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 9885246]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IMP] [PMID 18177206]; GO_process: GO:0007015 - actin filament organization [Evidence IMP,IPI] [PMID 9885246]; GO_process: GO:0007017 - microtubule-based process [Evidence IPI] [PMID 9885246]; GO_process: GO:0034316 - negative regulation of Arp2/3 complex-mediated actin nucleation [Evidence IDA,IMP] [PMID 12499356]; GO_process: GO:2000601 - positive regulation of Arp2/3 complex-mediated actin nucleation [Evidence IDA,IMP] [PMID 21454476]; Crn1p complement(820839..822593) Sugiyamaella lignohabitans 30034584 AWJ20_266 CDS ALD4 NC_031672.1 824006 825157 D Mitochondrial aldehyde dehydrogenase; required for growth on ethanol and conversion of acetaldehyde to acetate; phosphorylated; activity is K+ dependent; utilizes NADP+ or NAD+ equally as coenzymes; expression is glucose repressed; can substitute for cytosolic NADP-dependent aldehyde dehydrogenase when directed to the cytosol; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IMP] [PMID 9675847]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006740 - NADPH regeneration [Evidence IGI] [PMID 19158096]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IGI] [PMID 10919763]; GO_process: GO:0006067 - ethanol metabolic process [Evidence IMP] [PMID 9675847]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 10409655]; aldehyde dehydrogenase (NADP(+)) ALD4 824006..825157 Sugiyamaella lignohabitans 30034595 AWJ20_267 CDS AWJ20_267 NC_031672.1 825275 825508 D uncharacterized protein 825275..825508 Sugiyamaella lignohabitans 30034606 AWJ20_268 CDS GLN4 NC_031672.1 833710 836196 D Glutamine tRNA synthetase; monomeric class I tRNA synthetase that catalyzes the specific glutaminylation of tRNA(Glu); N-terminal domain proposed to be involved in enzyme-tRNA interactions; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15706032]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15706032]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004819 - glutamine-tRNA ligase activity [Evidence IDA] [PMID 2991203]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IMP,ISS] [PMID 2991203]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA,IEA]; glutamine--tRNA ligase 833710..836196 Sugiyamaella lignohabitans 30034617 AWJ20_269 CDS MET30 NC_031672.1 839956 842436 D F-box protein containing five copies of the WD40 motif; controls cell cycle function, sulfur metabolism, and methionine biosynthesis as part of the ubiquitin ligase complex; interacts with and regulates Met4p, localizes within the nucleus; dissociation of Met30p from SCF complex in response to cadmium stress is regulated by Cdc48p; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 9716410]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0043224 - nuclear SCF ubiquitin ligase complex [Evidence IDA] [PMID 10637232]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10637232]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 15870262]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 15870262]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 9716410]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IMP] [PMID 9716410]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IGI,IPI] [PMID 9499404]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 15870262]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 15870262]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0046685 - response to arsenic-containing substance [Evidence IDA] [PMID 15689486]; GO_process: GO:0046686 - response to cadmium ion [Evidence IDA] [PMID 15689486]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Met30p 839956..842436 Sugiyamaella lignohabitans 30034628 AWJ20_270 CDS GAC1 NC_031672.1 853989 856904 D protein phosphatase regulator GAC1 853989..856904 Sugiyamaella lignohabitans 30034640 AWJ20_271 CDS DBP9 NC_031672.1 859190 860950 D DEAD-box protein required for 27S rRNA processing; exhibits DNA, RNA and DNA/RNA helicase activities; ATPase activity shows preference for DNA over RNA; DNA helicase activity abolished by mutation in RNA-binding domain; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11565753]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IDA] [PMID 15028736]; GO_function: GO:0033680 - ATP-dependent DNA/RNA helicase activity [Evidence IDA] [PMID 15028736]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 15028736]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11565753]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Dbp9p 859190..860950 Sugiyamaella lignohabitans 30034651 AWJ20_272 CDS AWJ20_272 NC_031672.1 861644 862252 R uncharacterized protein complement(861644..862252) Sugiyamaella lignohabitans 30034662 AWJ20_273 CDS GCY1 NC_031672.1 863178 864119 R Glycerol dehydrogenase; involved in an alternative pathway for glycerol catabolism used under microaerobic conditions; also has mRNA binding activity; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GCY1 has a paralog, YPR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 10818358]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0047953 - glycerol 2-dehydrogenase (NADP+) activity [Evidence IEA]; GO_function: GO:1990042 - glycerol dehydrogenase [NAD(P)+] activity [Evidence IMP] [PMID 22979944]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glycerol 2-dehydrogenase (NADP(+)) GCY1 complement(863178..864119) Sugiyamaella lignohabitans 30034673 AWJ20_274 CDS RSB1 NC_031672.1 868545 869027 R Suppressor of sphingoid LCB sensitivity of an LCB-lyase mutation; putative integral membrane transporter or flippase that may transport long chain bases (LCBs) from the cytoplasmic side toward the extracytoplasmic side of the membrane; GO_component: GO:0071944 - cell periphery [Evidence IDA] [PMID 24146988]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 12034738]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 12034738]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12034738]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16407254]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IDA,ISS] [PMID 12034738]; GO_process: GO:0015908 - fatty acid transport [Evidence IDA] [PMID 12034738]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 15342785]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; phospholipid-translocating ATPase RSB1 complement(868545..869027) Sugiyamaella lignohabitans 30034684 AWJ20_275 CDS ARO80 NC_031672.1 872862 876281 D Zinc finger transcriptional activator of the Zn2Cys6 family; activates transcription of aromatic amino acid catabolic genes in the presence of aromatic amino acids; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23651256]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence ISS] [PMID 10207060]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA] [PMID 23651256]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO_process: GO:0009074 - aromatic amino acid family catabolic process [Evidence IMP] [PMID 10207060]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10207060]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA]; GO_process: GO:0006572 - tyrosine catabolic process [Evidence IEA]; Aro80p 872862..876281 Sugiyamaella lignohabitans 30034695 AWJ20_276 CDS JEN1 NC_031672.1 876451 877122 R Monocarboxylate/proton symporter of the plasma membrane; transport activity is dependent on the pH gradient across the membrane; mediates high-affinity uptake of carbon sources lactate, pyuvate, and acetate, and also of the micronutrient selenite, whose structure mimics that of monocarboxylates; expression and localization are tightly regulated, with transcription repression, mRNA degradation, and protein endocytosis and degradation all occurring in the presence of glucose; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17710650]; GO_function: GO:0015144 - carbohydrate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015355 - secondary active monocarboxylate transmembrane transporter activity [Evidence IMP] [PMID 17710650]; GO_function: GO:0097079 - selenite:proton symporter activity [Evidence IMP] [PMID 20861301]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 10198029]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0006849 - plasma membrane pyruvate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0097080 - plasma membrane selenite transport [Evidence IMP] [PMID 20861301]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Jen1p complement(876451..877122) Sugiyamaella lignohabitans 30034706 AWJ20_277 CDS AWJ20_277 NC_031672.1 877483 877821 D uncharacterized protein 877483..877821 Sugiyamaella lignohabitans 30034717 AWJ20_278 CDS JEN1 NC_031672.1 877627 877983 R Monocarboxylate/proton symporter of the plasma membrane; transport activity is dependent on the pH gradient across the membrane; mediates high-affinity uptake of carbon sources lactate, pyuvate, and acetate, and also of the micronutrient selenite, whose structure mimics that of monocarboxylates; expression and localization are tightly regulated, with transcription repression, mRNA degradation, and protein endocytosis and degradation all occurring in the presence of glucose; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17710650]; GO_function: GO:0015144 - carbohydrate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015355 - secondary active monocarboxylate transmembrane transporter activity [Evidence IMP] [PMID 17710650]; GO_function: GO:0097079 - selenite:proton symporter activity [Evidence IMP] [PMID 20861301]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 10198029]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0006849 - plasma membrane pyruvate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0097080 - plasma membrane selenite transport [Evidence IMP] [PMID 20861301]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Jen1p complement(877627..877983) Sugiyamaella lignohabitans 30034728 AWJ20_279 CDS AWJ20_279 NC_031672.1 879158 881605 R uncharacterized protein complement(879158..881605) Sugiyamaella lignohabitans 30034739 AWJ20_280 CDS AWJ20_280 NC_031672.1 883138 883896 R uncharacterized protein complement(883138..883896) Sugiyamaella lignohabitans 30034751 AWJ20_281 CDS PLC2 NC_031672.1 885257 886156 D 1-phosphatidylinositol phosphodiesterase 885257..886156 Sugiyamaella lignohabitans 30034762 AWJ20_282 CDS MET16 NC_031672.1 886728 887561 D 3'-phosphoadenylsulfate reductase; reduces 3'-phosphoadenylyl sulfate to adenosine-3',5'-bisphosphate and free sulfite using reduced thioredoxin as cosubstrate, involved in sulfate assimilation and methionine metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 3060034]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IEA,IEA]; GO_function: GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IMP] [PMID 2203779]; GO_function: GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IDA] [PMID 3060034]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0070814 - hydrogen sulfide biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IEA]; GO_process: GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IMP] [PMID 197388]; GO_process: GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IDA] [PMID 3060034]; GO_process: GO:0000096 - sulfur amino acid metabolic process [Evidence IMP] [PMID 1101032]; phosphoadenylyl-sulfate reductase (thioredoxin) 886728..887561 Sugiyamaella lignohabitans 30034773 AWJ20_283 CDS DPH2 NC_031672.1 887930 889669 D Protein required for synthesis of diphthamide; required along with Dph1p, Kti11p, Jjj3p, and Dph5p; diphthamide is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); may act in a complex with Dph1p and Kti11p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA,IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 15485916]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 8406038]; Dph2p 887930..889669 Sugiyamaella lignohabitans 30034784 AWJ20_284 CDS SEN1 NC_031672.1 889766 897309 R Presumed helicase and subunit of the Nrd1 complex (Nrd1p-Nab3p-Sen1p); complex interacts with the exosome to mediate 3' end formation of some mRNAs, snRNAs, snoRNAs, and CUTs; has a separate role in coordinating DNA replication with transcription, by associating with moving replication forks and preventing errors that occur when forks encounter transcribed regions; homolog of Senataxin, which is implicated in Ataxia-Oculomotor Apraxia 2 and a dominant form of ALS; GO_component: GO:0035649 - Nrd1 complex [Evidence IDA] [PMID 16427013]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23222640]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8544822]; GO_component: GO:0005657 - replication fork [Evidence IDA] [PMID 23141540]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence ISS] [PMID 10545196]; GO_function: GO:0032575 - ATP-dependent 5'-3' RNA helicase activity [Evidence ISS] [PMID 10545196]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence ISS] [PMID 10545196]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence ISS] [PMID 10545196]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0019904 - protein domain specific binding [Evidence IDA,IMP] [PMID 22286094]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 23748379]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 11565036]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IMP] [PMID 22123738]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0045005 - maintenance of fidelity involved in DNA-dependent DNA replication [Evidence IMP] [PMID 23141540]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 9365256]; GO_process: GO:1990248 - regulation of transcription from RNA polymerase II promoter in response to DNA damage [Evidence IMP] [PMID 23741394]; GO_process: GO:0016180 - snRNA processing [Evidence IMP] [PMID 9365256]; GO_process: GO:0031126 - snoRNA 3'-end processing [Evidence IMP] [PMID 11565036]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 9365256]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 17157256]; putative DNA/RNA helicase SEN1 complement(join(889766..892799,893153..897309)) Sugiyamaella lignohabitans 30034795 AWJ20_285 CDS PRX1 NC_031672.1 898447 899124 R Mitochondrial peroxiredoxin with thioredoxin peroxidase activity; has a role in reduction of hydroperoxides; reactivation requires Trr2p and glutathione; induced during respiratory growth and oxidative stress; phosphorylated; protein abundance increases in response to DNA replication stress; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,ISS] [PMID 10681558]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10821871]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA,IEA]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP,ISS] [PMID 10681558]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA] [PMID 10821871]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 10681558]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0046686 - response to cadmium ion [Evidence IMP] [PMID 19332553]; Prx1p complement(898447..899124) Sugiyamaella lignohabitans 30034806 AWJ20_288 CDS PCL6 NC_031672.1 902782 905577 R Pho85p cyclin of the Pho80p subfamily; forms the major Glc8p kinase together with Pcl7p and Pho85p; involved in the control of glycogen storage by Pho85p; stabilized by Elongin C binding; PCL6 has a paralog, PCL7, that arose from the whole genome duplication; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence TAS] [PMID 11602261]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence TAS] [PMID 11602261]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IEA]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0005979 - regulation of glycogen biosynthetic process [Evidence IGI] [PMID 11602261]; GO_process: GO:0005981 - regulation of glycogen catabolic process [Evidence IGI] [PMID 11602261]; Pcl6p complement(902782..905577) Sugiyamaella lignohabitans 30034839 AWJ20_289 CDS HSP104 NC_031672.1 912132 914804 D Disaggregase; heat shock protein that cooperates with Ydj1p (Hsp40) and Ssa1p (Hsp70) to refold and reactivate previously denatured, aggregated proteins; responsive to stresses including: heat, ethanol, and sodium arsenite; involved in [PSI+] propagation; protein becomes more abundant and forms cytoplasmic foci in response to DNA replication stress; potentiated Hsp104p variants decrease TDP-43 proteotoxicity by eliminating its cytoplasmic aggregation; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10467108]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10467108]; GO_function: GO:0043531 - ADP binding [Evidence IMP] [PMID 11867765]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 11867765]; GO_function: GO:0042623 - ATPase activity, coupled [Evidence IDA,IMP] [PMID 16135516]; GO_function: GO:0042623 - ATPase activity, coupled [Evidence IMP] [PMID 9674429]; GO_function: GO:0051087 - chaperone binding [Evidence IDA] [PMID 9674429]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16135516]; GO_process: GO:0070370 - cellular heat acclimation [Evidence IMP] [PMID 2188365]; GO_process: GO:0070389 - chaperone cofactor-dependent protein refolding [Evidence IDA] [PMID 9674429]; GO_process: GO:0001319 - inheritance of oxidatively modified proteins involved in replicative cell aging [Evidence IGI,IMP] [PMID 17908928]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IMP] [PMID 10931304]; GO_process: GO:0019538 - protein metabolic process [Evidence IEA]; GO_process: GO:0043335 - protein unfolding [Evidence IMP] [PMID 7984243]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0070414 - trehalose metabolism in response to heat stress [Evidence IMP] [PMID 9797333]; chaperone ATPase HSP104 912132..914804 Sugiyamaella lignohabitans 30034850 AWJ20_290 CDS AWJ20_290 NC_031672.1 913598 913825 R uncharacterized protein complement(913598..913825) Sugiyamaella lignohabitans 30034862 AWJ20_291 CDS TIF6 NC_031672.1 915066 915644 R Constituent of 66S pre-ribosomal particles; has similarity to human translation initiation factor 6 (eIF6); may be involved in the biogenesis and or stability of 60S ribosomal subunits; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11238882]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17353896]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11238882]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 16188229]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IEA]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IDA] [PMID 9891075]; GO_function: GO:0043022 - ribosome binding [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238882]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238882]; GO_process: GO:0042256 - mature ribosome assembly [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IGI] [PMID 17353896]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 10206977]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 11238882]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IPI] [PMID 15100437]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IEA]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IGI] [PMID 17353896]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; translation initiation factor 6 complement(915066..915644) Sugiyamaella lignohabitans 30034873 AWJ20_292 CDS AWJ20_292 NC_031672.1 917035 918666 R uncharacterized protein complement(917035..918666) Sugiyamaella lignohabitans 30034884 AWJ20_293 CDS AWJ20_293 NC_031672.1 921323 922939 R E3 ubiquitin-protein ligase MARCH5 complement(921323..922939) Sugiyamaella lignohabitans 30034895 AWJ20_294 CDS AWJ20_294 NC_031672.1 924187 925302 D uncharacterized protein 924187..925302 Sugiyamaella lignohabitans 30034906 AWJ20_295 CDS AWJ20_295 NC_031672.1 925546 926142 R uncharacterized protein complement(925546..926142) Sugiyamaella lignohabitans 30034917 AWJ20_296 CDS HNT1 NC_031672.1 928388 928954 D Adenosine 5'-monophosphoramidase; interacts physically and genetically with Kin28p, a CDK and TFIIK subunit, and genetically with CAK1; member of the histidine triad (HIT) superfamily of nucleotide-binding proteins and similar to Hint; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IDA] [PMID 11805111]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence ISS] [PMID 9164465]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IDA] [PMID 11805111]; Hnt1p 928388..928954 Sugiyamaella lignohabitans 30034928 AWJ20_297 CDS CLB2 NC_031672.1 929217 931241 R B-type cyclin CLB2 complement(929217..931241) Sugiyamaella lignohabitans 30034939 AWJ20_298 CDS AWJ20_298 NC_031672.1 934497 937007 D uncharacterized protein 934497..937007 Sugiyamaella lignohabitans 30034950 AWJ20_299 CDS JJJ3 NC_031672.1 937234 937743 R hypothetical protein; contains a CSL Zn finger and a DnaJ-domain; involved in diphthamide biosynthesis; ortholog human Dph4; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008198 - ferrous iron binding [Evidence IDA] [PMID 22367199]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 15485916]; Jjj3p complement(937234..937743) Sugiyamaella lignohabitans 30034961 AWJ20_300 CDS RPA49 NC_031672.1 938459 939697 D RNA polymerase I subunit A49; essential for nucleolar assembly and for high polymerase loading rate; required for nucleolar localization of Rpa34p; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IMP] [PMID 1409638]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 21263028]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006362 - transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 18160037]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IMP] [PMID 12374750]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IGI] [PMID 9121426]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase I subunit RPA49 938459..939697 Sugiyamaella lignohabitans 30034974 AWJ20_301 CDS MAL11 NC_031672.1 940054 941709 R High-affinity maltose transporter (alpha-glucoside transporter); inducible; encoded in the MAL1 complex locus; broad substrate specificity that includes maltotriose; required for isomaltose utilization; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 16741702]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8594329]; GO_function: GO:0005352 - alpha-glucoside:proton symporter activity [Evidence IDA] [PMID 12702465]; GO_function: GO:0005364 - maltose:proton symporter activity [Evidence IMP] [PMID 1999393]; GO_function: GO:0005364 - maltose:proton symporter activity [Evidence IMP] [PMID 8594329]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015293 - symporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015574 - trehalose transmembrane transporter activity [Evidence IDA] [PMID 12702465]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0046352 - disaccharide catabolic process [Evidence IMP] [PMID 20562106]; GO_process: GO:0000023 - maltose metabolic process [Evidence IEA]; GO_process: GO:0015768 - maltose transport [Evidence IGI] [PMID 6371820]; GO_process: GO:0015768 - maltose transport [Evidence IMP] [PMID 8594329]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0015771 - trehalose transport [Evidence IDA] [PMID 12702465]; Mal11p complement(940054..941709) Sugiyamaella lignohabitans 30034985 AWJ20_302 CDS AWJ20_302 NC_031672.1 942926 944233 D uncharacterized protein 942926..944233 Sugiyamaella lignohabitans 30034996 AWJ20_303 CDS AWJ20_303 NC_031672.1 944475 946499 R uncharacterized protein complement(944475..946499) Sugiyamaella lignohabitans 30035007 AWJ20_304 CDS AWJ20_304 NC_031672.1 947045 948394 D uncharacterized protein 947045..948394 Sugiyamaella lignohabitans 30035018 AWJ20_305 CDS AWJ20_305 NC_031672.1 948662 949303 D uncharacterized protein 948662..949303 Sugiyamaella lignohabitans 30035029 AWJ20_306 CDS AWJ20_306 NC_031672.1 949782 952166 R uncharacterized protein complement(949782..952166) Sugiyamaella lignohabitans 30035040 AWJ20_307 CDS SES1 NC_031672.1 952947 954305 R Cytosolic seryl-tRNA synthetase; class II aminoacyl-tRNA synthetase that aminoacylates tRNA(Ser), displays tRNA-dependent amino acid recognition which enhances discrimination of the serine substrate, interacts with peroxin Pex21p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004828 - serine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004828 - serine-tRNA ligase activity [Evidence IDA] [PMID 3031581]; GO_process: GO:0097056 - selenocysteinyl-tRNA(Sec) biosynthetic process [Evidence IEA]; GO_process: GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006434 - seryl-tRNA aminoacylation [Evidence IDA] [PMID 3031581]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; serine--tRNA ligase SES1 complement(952947..954305) Sugiyamaella lignohabitans 30035051 AWJ20_308 CDS ESL1 NC_031672.1 957317 960346 D hypothetical protein; predicted to contain a PINc domain; ESL1 has a paralog, ESL2, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Esl1p 957317..960346 Sugiyamaella lignohabitans 30035062 AWJ20_309 CDS AWJ20_309 NC_031672.1 961559 962311 D uncharacterized protein 961559..962311 Sugiyamaella lignohabitans 30035073 AWJ20_310 CDS ADE5,7 NC_031672.1 963887 966256 D Enzyme of the 'de novo' purine nucleotide biosynthetic pathway; contains aminoimidazole ribotide synthetase and glycinamide ribotide synthetase activities; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004637 - phosphoribosylamine-glycine ligase activity [Evidence IEA,IEA]; GO_function: GO:0004637 - phosphoribosylamine-glycine ligase activity [Evidence ISS] [PMID 3097325]; GO_function: GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity [Evidence IEA,IEA]; GO_function: GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity [Evidence ISS] [PMID 3097325]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009113 - purine nucleobase biosynthetic process [Evidence IEA]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence TAS] [PMID 9148957]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; bifunctional aminoimidazole ribotide synthase/glycinamide ribotide synthase 963887..966256 Sugiyamaella lignohabitans 30035085 AWJ20_311 CDS DHH1 NC_031672.1 969152 970762 R Cytoplasmic DExD/H-box helicase, stimulates mRNA decapping; coordinates distinct steps in mRNA function and decay, interacts with both the decapping and deadenylase complexes, role in translational repression, mRNA decay, and processing body dynamics; may have a role in mRNA export; C-terminus of Dhh1p interacts with Ngr1p and promotes POR1, but not EDC1 mRNA decay; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12032091]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 12730603]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 18611963]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 20368989]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 12930949]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 23706738]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 11780629]; GO_function: GO:0090079 - translation regulator activity, nucleic acid binding [Evidence IGI,IMP] [PMID 22719226]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IMP] [PMID 18182159]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IGI] [PMID 18981231]; GO_process: GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA [Evidence IMP] [PMID 11780629]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0017148 - negative regulation of translation [Evidence IMP] [PMID 21844211]; GO_process: GO:0045900 - negative regulation of translational elongation [Evidence IGI,IMP] [PMID 22719226]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0034063 - stress granule assembly [Evidence IMP] [PMID 18981231]; GO_process: GO:0006810 - transport [Evidence IEA]; DExD/H-box ATP-dependent RNA helicase DHH1 complement(969152..970762) Sugiyamaella lignohabitans 30035096 AWJ20_312 CDS STE7 NC_031672.1 972230 974227 D mitogen-activated protein kinase kinase STE7 972230..974227 Sugiyamaella lignohabitans 30035107 AWJ20_313 CDS AWJ20_313 NC_031672.1 974469 974762 R uncharacterized protein complement(974469..974762) Sugiyamaella lignohabitans 30035118 AWJ20_314 CDS CMR1 NC_031672.1 987840 989351 D DNA-binding protein with preference for UV-damaged DNA; protein sequence contains three WD domains (WD-40 repeat); green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; potential regulatory target of Mbp1p, which binds to the promoter region; co-localizes with Hos2p in nuclear foci in response to DNA damage by MMS; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22367945]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 22367945]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 22367945]; GO_process: GO:0008150 - biological_process [Evidence ND]; Cmr1p 987840..989351 Sugiyamaella lignohabitans 30035129 AWJ20_315 CDS AWJ20_315 NC_031672.1 991873 993621 D uncharacterized protein 991873..993621 Sugiyamaella lignohabitans 30035140 AWJ20_316 CDS PRC1 NC_031672.1 993802 994497 R Vacuolar carboxypeptidase Y (proteinase C, CPY); broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IDA,IMP] [PMID 8679540]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IDA,IMP] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence TAS] [PMID 8789256]; carboxypeptidase C PRC1 complement(993802..994497) Sugiyamaella lignohabitans 30035151 AWJ20_317 CDS AWJ20_317 NC_031672.1 994984 995475 R Putative serine type carboxypeptidase; role in phytochelatin synthesis; green fluorescent protein (GFP)-fusion protein localizes to the vacuole; expression induced by nitrogen limitation in a GLN3, GAT1-independent manner; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0017171 - serine hydrolase activity [Evidence IDA,ISM] [PMID 14645503]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence ISA] [PMID 17408619]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IGI] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; carboxypeptidase C complement(994984..995475) Sugiyamaella lignohabitans 30035162 AWJ20_318 CDS AWJ20_318 NC_031672.1 996453 997715 D uncharacterized protein 996453..997715 Sugiyamaella lignohabitans 30035173 AWJ20_319 CDS APL2 NC_031672.1 998912 1001152 R Beta-adaptin subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; involved in clathrin-dependent Golgi protein sorting; protein abundance increases in response to DNA replication stress; GO_component: GO:0030121 - AP-1 adaptor complex [Evidence IPI,ISS] [PMID 10564262]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IPI,ISS] [PMID 10564262]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 17003107]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IPI,ISS] [PMID 10564262]; Apl2p complement(998912..1001152) Sugiyamaella lignohabitans 30035184 AWJ20_320 CDS ASC1 NC_031672.1 1002574 1003158 D G-protein beta subunit and guanine dissociation inhibitor for Gpa2p; ortholog of RACK1 that inhibits translation; core component of the small (40S) ribosomal subunit; regulates P-body formation induced by replication stress; represses Gcn4p in the absence of amino acid starvation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 15340087]; GO_function: GO:0001965 - G-protein alpha-subunit binding [Evidence IPI] [PMID 17591772]; GO_function: GO:0005092 - GDP-dissociation inhibitor activity [Evidence IDA] [PMID 17591772]; GO_function: GO:0004871 - signal transducer activity [Evidence IMP,IPI] [PMID 17591772]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IMP,IPI] [PMID 17591772]; GO_process: GO:0010255 - glucose mediated signaling pathway [Evidence IMP,IPI] [PMID 17591772]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 17591772]; GO_process: GO:0017148 - negative regulation of translation [Evidence IMP] [PMID 15340087]; guanine nucleotide-binding protein subunit beta 1002574..1003158 Sugiyamaella lignohabitans 30035196 AWJ20_321 CDS OCT1 NC_031672.1 1004747 1007161 R Mitochondrial intermediate peptidase; cleaves destabilizing N-terminal residues of a subset of proteins upon import, after their cleavage by mitochondrial processing peptidase (Mas1p-Mas2p); may contribute to mitochondrial iron homeostasis; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 8035833]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA,IMP] [PMID 8831696]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IGI,IMP] [PMID 10332043]; GO_process: GO:0006627 - protein processing involved in protein targeting to mitochondrion [Evidence IMP] [PMID 8035833]; GO_process: GO:0050821 - protein stabilization [Evidence IMP] [PMID 21525245]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Oct1p complement(1004747..1007161) Sugiyamaella lignohabitans 30035207 AWJ20_322 CDS GLN1 NC_031672.1 1007892 1008998 R Glutamine synthetase (GS); synthesizes glutamine from glutamate and ammonia; with Glt1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source and by amino acid limitation; forms filaments of back-to-back stacks of cylindrical homo-decamers at low pH, leading to enzymatic inactivation and storage during states of advanced cellular starvation; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA,IEA]; GO_function: GO:0004356 - glutamate-ammonia ligase activity [Evidence IMP] [PMID 1347768]; GO_function: GO:0004356 - glutamate-ammonia ligase activity [Evidence IDA] [PMID 4156034]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006542 - glutamine biosynthetic process [Evidence IEA]; GO_process: GO:0006542 - glutamine biosynthetic process [Evidence IDA] [PMID 6129248]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; glutamate--ammonia ligase complement(1007892..1008998) Sugiyamaella lignohabitans 30035218 AWJ20_323 CDS TOD6 NC_031672.1 1022434 1024257 D PAC motif binding protein involved in rRNA and ribosome biogenesis; subunit of the RPD3L histone deacetylase complex; Myb-like HTH transcription factor; hypophosphorylated by rapamycin treatment in a Sch9p-dependent manner; TOD6 has a paralog, DOT6, that arose from the whole genome duplication; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA,IDA] [PMID 19158363]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 19158363]; Tod6p 1022434..1024257 Sugiyamaella lignohabitans 30035229 AWJ20_324 CDS SAS3 NC_031672.1 1025407 1027704 R Histone acetyltransferase catalytic subunit of NuA3 complex; acetylates histone H3, involved in transcriptional silencing; homolog of the mammalian MOZ proto-oncogene; mutant has aneuploidy tolerance; sas3gcn5 double mutation is lethal; GO_component: GO:0033100 - NuA3 histone acetyltransferase complex [Evidence IDA] [PMID 10817755]; GO_component: GO:0033100 - NuA3 histone acetyltransferase complex [Evidence IDA] [PMID 17157260]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 10817755]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IMP] [PMID 11731478]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 11731479]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11731479]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 10817755]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sas3p complement(1025407..1027704) Sugiyamaella lignohabitans 30035240 AWJ20_325 CDS AIM10 NC_031672.1 1028930 1030585 D Protein with similarity to tRNA synthetases; non-tagged protein is detected in purified mitochondria; null mutant is viable and displays elevated frequency of mitochondrial genome loss; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004827 - proline-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004827 - proline-tRNA ligase activity [Evidence ISS] [PMID 10592175]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; putative proline--tRNA ligase AIM10 1028930..1030585 Sugiyamaella lignohabitans 30035251 AWJ20_326 CDS PIN4 NC_031672.1 1031592 1034678 R Protein involved in G2/M phase progression and response to DNA damage; interacts with Rad53p; contains an RNA recognition motif, a nuclear localization signal, and several SQ/TQ cluster domains; hyperphosphorylated in response to DNA damage; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IGI,IPI] [PMID 15024067]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 15024067]; Pin4p complement(1031592..1034678) Sugiyamaella lignohabitans 30035262 AWJ20_327 CDS IBA57 NC_031672.1 1036396 1037850 D Protein involved in incorporating iron-sulfur clusters into proteins; mitochondrial matrix protein; involved in the incorporation of iron-sulfur clusters into mitochondrial aconitase-type proteins; activates the radical-SAM family members Bio2p and Lip5p; interacts with Ccr4p in the two-hybrid system; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 18086897]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 18086897]; Iba57p 1036396..1037850 Sugiyamaella lignohabitans 30035273 AWJ20_328 CDS ARO4 NC_031672.1 1039143 1040264 D 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase; catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by tyrosine or high concentrations of phenylalanine or tryptophan; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IDA] [PMID 2880280]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence TAS] [PMID 1943992]; GO_process: GO:0006950 - response to stress [Evidence IEA]; 3-deoxy-7-phosphoheptulonate synthase ARO4 1039143..1040264 Sugiyamaella lignohabitans 30035284 AWJ20_329 CDS HIS7 NC_031672.1 1042234 1043904 D Imidazole glycerol phosphate synthase; glutamine amidotransferase:cyclase that catalyzes the fifth step of histidine biosynthesis and also produces 5-aminoimidazole-4-carboxamide ribotide (AICAR), a purine precursor; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005622 - intracellular [Evidence TAS] [PMID 8852895]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004359 - glutaminase activity [Evidence IDA] [PMID 10733892]; GO_function: GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]; GO_function: GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IDA] [PMID 10733892]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016833 - oxo-acid-lyase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IMP] [PMID 14190241]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; imidazoleglycerol-phosphate synthase 1042234..1043904 Sugiyamaella lignohabitans 30035295 AWJ20_330 CDS VPS75 NC_031672.1 1044129 1044782 R NAP family histone chaperone; binds to histones and Rtt109p, stimulating histone acetyltransferase activity; possesses nucleosome assembly activity in vitro; proposed role in vacuolar protein sorting and in double-strand break repair; protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000785 - chromatin [Evidence IDA] [PMID 17344218]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0010698 - acetyltransferase activator activity [Evidence IDA,IMP] [PMID 19172749]; GO_function: GO:0042393 - histone binding [Evidence IDA,IPI] [PMID 17344218]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IMP,IPI] [PMID 18036332]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA] [PMID 17344218]; GO_process: GO:0035066 - positive regulation of histone acetylation [Evidence IDA,IGI,IMP] [PMID 18458063]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps75p complement(1044129..1044782) Sugiyamaella lignohabitans 30035307 AWJ20_331 CDS AWJ20_331 NC_031672.1 1045507 1046907 R top hit is XP_007844384.1 originated in Moniliophthora roreri MCA 2997; membrane transporter complement(1045507..1046907) Sugiyamaella lignohabitans 30035318 AWJ20_332 CDS AWJ20_332 NC_031672.1 1048177 1048953 R uncharacterized protein complement(1048177..1048953) Sugiyamaella lignohabitans 30035329 AWJ20_334 CDS CCT3 NC_031672.1 1052311 1053867 D Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; capable of binding Q/N rich proteins and mediating their folding; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct3p 1052311..1053867 Sugiyamaella lignohabitans 30035351 AWJ20_335 CDS AWJ20_335 NC_031672.1 1053132 1053512 R uncharacterized protein complement(1053132..1053512) Sugiyamaella lignohabitans 30035362 AWJ20_336 CDS SSU1 NC_031672.1 1054782 1055975 R Plasma membrane sulfite pump involved in sulfite metabolism; required for efficient sulfite efflux; major facilitator superfamily protein; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9294463]; GO_function: GO:0000319 - sulfite transmembrane transporter activity [Evidence IDA] [PMID 10870099]; GO_process: GO:0000316 - sulfite transport [Evidence IDA] [PMID 10870099]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ssu1p complement(1054782..1055975) Sugiyamaella lignohabitans 30035373 AWJ20_338 CDS AWJ20_338 NC_031672.1 1060633 1062288 D Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein 1060633..1062288 Sugiyamaella lignohabitans 30035395 AWJ20_339 CDS RPS18B NC_031672.1 1065284 1065661 D Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S18 and bacterial S13; RPS18B has a paralog, RPS18A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IBA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 14627813]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IGI] [PMID 16246728]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S18B 1065284..1065661 Sugiyamaella lignohabitans 30035406 AWJ20_340 CDS ADO1 NC_031672.1 1068017 1069060 R Adenosine kinase; required for the utilization of S-adenosylmethionine (AdoMet); may be involved in recycling adenosine produced through the methyl cycle; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004001 - adenosine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004001 - adenosine kinase activity [Evidence IDA,IMP] [PMID 11223943]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0044209 - AMP salvage [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IMP] [PMID 11223943]; GO_process: GO:0006166 - purine ribonucleoside salvage [Evidence IEA,IEA]; adenosine kinase complement(1068017..1069060) Sugiyamaella lignohabitans 30035418 AWJ20_341 CDS FMN1 NC_031672.1 1072257 1072868 R Riboflavin kinase, produces riboflavin monophosphate (FMN); FMN is a necessary cofactor for many enzymes; predominantly localizes to the microsomal fraction and also found in the mitochondrial inner membrane; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA,IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IDA] [PMID 10887197]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10887197]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003919 - FMN adenylyltransferase activity [Evidence IDA] [PMID 10887197]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008531 - riboflavin kinase activity [Evidence IEA,IEA]; GO_function: GO:0008531 - riboflavin kinase activity [Evidence IDA,IMP] [PMID 10887197]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009398 - FMN biosynthetic process [Evidence IEA]; GO_process: GO:0009398 - FMN biosynthetic process [Evidence IDA,IMP] [PMID 10887197]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA]; riboflavin kinase complement(1072257..1072868) Sugiyamaella lignohabitans 30035429 AWJ20_342 CDS GLE1 NC_031672.1 1075092 1077197 R nucleoporin GLE1 complement(1075092..1077197) Sugiyamaella lignohabitans 30035440 AWJ20_343 CDS MRPL7 NC_031672.1 1078066 1078944 D Mitochondrial ribosomal protein of the large subunit; MRPL7 produces both YmL5 and YmL7, which are two different modified forms of the same protein; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL7/YmL5 1078066..1078944 Sugiyamaella lignohabitans 30035451 AWJ20_344 CDS SEC26 NC_031672.1 1079060 1081912 R Essential beta-coat protein of the COPI coatomer; involved in ER-to-Golgi protein trafficking and maintenance of normal ER morphology; shares 43% sequence identity with mammalian beta-coat protein (beta-COP); GO_component: GO:0030126 - COPI vesicle coat [Evidence IEA]; GO_component: GO:0030126 - COPI vesicle coat [Evidence IGI,ISS] [PMID 7929113]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0030135 - coated vesicle [Evidence ISS] [PMID 7929113]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 7929113]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA,IEA]; Sec26p complement(1079060..1081912) Sugiyamaella lignohabitans 30035462 AWJ20_345 CDS LUC7 NC_031672.1 1083658 1084407 R Essential protein associated with the U1 snRNP complex; splicing factor involved in recognition of 5' splice site; contains two zinc finger motifs; N-terminal zinc finger binds pre-mRNA; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005685 - U1 snRNP [Evidence IEA]; GO_component: GO:0005685 - U1 snRNP [Evidence IGI,IMP] [PMID 10500099]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IMP] [PMID 17726058]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006376 - mRNA splice site selection [Evidence IEA]; GO_process: GO:0006376 - mRNA splice site selection [Evidence IGI,IMP] [PMID 10500099]; Luc7p complement(1083658..1084407) Sugiyamaella lignohabitans 30035473 AWJ20_346 CDS SWP1 NC_031672.1 1085508 1086065 D Delta subunit of the oligosaccharyl transferase glycoprotein complex; complex is required for N-linked glycosylation of proteins in the endoplasmic reticulum; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IEA]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 10358084]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 16297388]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 9405463]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IMP] [PMID 9405463]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IPI] [PMID 9405463]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; Swp1p 1085508..1086065 Sugiyamaella lignohabitans 30035484 AWJ20_347 CDS AWJ20_347 NC_031672.1 1086329 1088482 R uncharacterized protein complement(1086329..1088482) Sugiyamaella lignohabitans 30035495 AWJ20_348 CDS LYS4 NC_031672.1 1093402 1095510 R Homoaconitase; catalyzes the conversion of homocitrate to homoisocitrate, which is a step in the lysine biosynthesis pathway; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0004409 - homoaconitate hydratase activity [Evidence IEA,IEA]; GO_function: GO:0004409 - homoaconitate hydratase activity [Evidence ISA] [PMID 9268014]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IMP] [PMID 2507177]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; homoaconitate hydratase LYS4 complement(1093402..1095510) Sugiyamaella lignohabitans 30035506 AWJ20_349 CDS PRP22 NC_031672.1 1098352 1100556 D DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase; associates with lariat intermediates before the second catalytic step of splicing; mediates ATP-dependent mRNA release from the spliceosome and unwinds RNA duplexes; required for proofreading the exon ligation reaction; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IMP] [PMID 9524130]; GO_component: GO:0071021 - U2-type post-spliceosomal complex [Evidence IMP] [PMID 12212850]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 9582286]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IDA] [PMID 12212850]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID 9524130]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IDA] [PMID 12212850]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 22408182]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000390 - spliceosomal complex disassembly [Evidence IMP] [PMID 9524130]; DEAH-box ATP-dependent RNA helicase PRP22 1098352..1100556 Sugiyamaella lignohabitans 30035517 AWJ20_350 CDS SUI1 NC_031672.1 1101974 1102306 D Translation initiation factor eIF1; component of a complex involved in recognition of the initiator codon; modulates translation accuracy at the initiation phase; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IDA] [PMID 12008673]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0043024 - ribosomal small subunit binding [Evidence IDA] [PMID 17434125]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 12008673]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 12861028]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 15145951]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IPI] [PMID 22851688]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 15664195]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 17434125]; GO_process: GO:1990145 - maintenance of translational fidelity [Evidence IMP] [PMID 9488467]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; translation initiation factor eIF1 1101974..1102306 Sugiyamaella lignohabitans 30035529 AWJ20_351 CDS NVJ2 NC_031672.1 1102853 1105813 R Lipid-binding ER protein, enriched at nucleus-vacuolar junctions (NVJ); may be involved in sterol metabolism or signaling at the NVJ; contains a synaptotagmin-like-mitochondrial- lipid binding protein (SMP) domain; binds phosphatidylinositols and other lipids in a large-scale study; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0071561 - nucleus-vacuole junction [Evidence IDA] [PMID 22250200]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 22250200]; GO_process: GO:0008150 - biological_process [Evidence ND]; Nvj2p complement(1102853..1105813) Sugiyamaella lignohabitans 30035540 AWJ20_353 CDS AGP2 NC_031672.1 1116191 1117870 R Plasma membrane regulator of polyamine and carnitine transport; has similarity to transporters but lacks transport activity; may act as a sensor that transduces environmental signals; has a positive or negative regulatory effect on transcription of many transporter genes; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10545096]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 10545096]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10545096]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 23755272]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:1902274 - positive regulation of (R)-carnitine transmembrane transport [Evidence IMP] [PMID 23755272]; GO_process: GO:1902269 - positive regulation of polyamine transmembrane transport [Evidence IMP] [PMID 23755272]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Agp2p complement(1116191..1117870) Sugiyamaella lignohabitans 30035562 AWJ20_354 CDS ETP1 NC_031672.1 1129517 1131691 D hypothetical protein required for growth on ethanol; contains a zinc finger region and has homology to human BRAP2, which is a cytoplasmic protein that binds nuclear localization sequences; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008139 - nuclear localization sequence binding [Evidence IDA] [PMID 9497340]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 16564012]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0045471 - response to ethanol [Evidence IMP] [PMID 19416103]; Etp1p 1129517..1131691 Sugiyamaella lignohabitans 30035573 AWJ20_355 CDS PRS3 NC_031672.1 1132699 1133436 D 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase; synthesizes PRPP, which is required for nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA,IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IGI] [PMID 15280369]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IMP] [PMID 10212224]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IGI] [PMID 15280369]; GO_process: GO:0044249 - cellular biosynthetic process [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IPI] [PMID 15470112]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0009156 - ribonucleoside monophosphate biosynthetic process [Evidence IEA]; ribose phosphate diphosphokinase subunit PRS3 1132699..1133436 Sugiyamaella lignohabitans 30035584 AWJ20_356 CDS AWJ20_356 NC_031672.1 1133631 1134443 R uncharacterized protein complement(1133631..1134443) Sugiyamaella lignohabitans 30035595 AWJ20_357 CDS AWJ20_357 NC_031672.1 1135921 1137705 D uncharacterized protein 1135921..1137705 Sugiyamaella lignohabitans 30035606 AWJ20_358 CDS TUB1 NC_031672.1 1137978 1139324 R Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; relative distribution to nuclear foci increases upon DNA replication stress; TUB1 has a paralog, TUB3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005828 - kinetochore microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005874 - microtubule [Evidence IEA,IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005827 - polar microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0043234 - protein complex [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_component: GO:0045298 - tubulin complex [Evidence IDA,IPI] [PMID 9488492]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0045143 - homologous chromosome segregation [Evidence IMP] [PMID 16582437]; GO_process: GO:0007017 - microtubule-based process [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 16582437]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 16582437]; GO_process: GO:0051258 - protein polymerization [Evidence IEA]; alpha-tubulin TUB1 complement(1137978..1139324) Sugiyamaella lignohabitans 30035617 AWJ20_359 CDS ALD5 NC_031672.1 1140701 1142104 R Mitochondrial aldehyde dehydrogenase; involved in regulation or biosynthesis of electron transport chain components and acetate formation; activated by K+; utilizes NADP+ as the preferred coenzyme; constitutively expressed; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IMP] [PMID 15256563]; GO_process: GO:0006068 - ethanol catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldehyde dehydrogenase (NAD(P)(+)) ALD5 complement(1140701..1142104) Sugiyamaella lignohabitans 30035628 AWJ20_360 CDS ADH6 NC_031672.1 1143860 1144945 R NADPH-dependent medium chain alcohol dehydrogenase; has broad substrate specificity; member of the cinnamyl family of alcohol dehydrogenases; may be involved in fusel alcohol synthesis or in aldehyde tolerance; protein abundance increases in response to DNA replication stress; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008106 - alcohol dehydrogenase (NADP+) activity [Evidence IEA]; GO_function: GO:0008106 - alcohol dehydrogenase (NADP+) activity [Evidence IDA] [PMID 11742541]; GO_function: GO:0033833 - hydroxymethylfurfural reductase (NADH) activity [Evidence IMP] [PMID 16652391]; GO_function: GO:0033845 - hydroxymethylfurfural reductase (NADPH) activity [Evidence IMP] [PMID 16652391]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006066 - alcohol metabolic process [Evidence IDA] [PMID 11742541]; GO_process: GO:0006081 - cellular aldehyde metabolic process [Evidence IDA] [PMID 11742541]; GO_process: GO:0033859 - furaldehyde metabolic process [Evidence IMP] [PMID 16652391]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Adh6p complement(1143860..1144945) Sugiyamaella lignohabitans 30035640 AWJ20_361 CDS GLK1 NC_031672.1 1147694 1149109 D Glucokinase; catalyzes the phosphorylation of glucose at C6 in the first irreversible step of glucose metabolism; one of three glucose phosphorylating enzymes; expression regulated by non-fermentable carbon sources; GLK1 has a paralog, EMI2, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004340 - glucokinase activity [Evidence IEA]; GO_function: GO:0004340 - glucokinase activity [Evidence IMP] [PMID 6341351]; GO_function: GO:0004340 - glucokinase activity [Evidence IDA] [PMID 8501032]; GO_function: GO:0004396 - hexokinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA]; GO_process: GO:0051156 - glucose 6-phosphate metabolic process [Evidence IEA]; GO_process: GO:0046323 - glucose import [Evidence IGI] [PMID 6300872]; GO_process: GO:0006006 - glucose metabolic process [Evidence IMP] [PMID 6300872]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IDA] [PMID 8501032]; GO_process: GO:0006013 - mannose metabolic process [Evidence IDA] [PMID 237183]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; glucokinase 1147694..1149109 Sugiyamaella lignohabitans 30035651 AWJ20_362 CDS YOX1 NC_031672.1 1149439 1152048 R Homeobox transcriptional repressor; binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycle-regulated; potential Cdc28p substrate; relocalizes from nucleus to cytoplasm upon DNA replication stress; YOX1 has a paralog, YHP1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12464632]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA,IMP] [PMID 12464633]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA] [PMID 20385087]; GO_function: GO:0001191 - RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription [Evidence IPI] [PMID 12464633]; GO_function: GO:0001191 - RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription [Evidence IMP,IPI] [PMID 20385087]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0071930 - negative regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 12464633]; GO_process: GO:0071930 - negative regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 17314407]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Yox1p complement(1149439..1152048) Sugiyamaella lignohabitans 30035662 AWJ20_363 CDS HSP12 NC_031672.1 1164775 1165140 D Plasma membrane protein involved in maintaining membrane organization; involved in maintaining organization during stress conditions; induced by heat shock, oxidative stress, osmostress, stationary phase, glucose depletion, oleate and alcohol; protein abundance increased in response to DNA replication stress and dietary restriction; regulated by the HOG and Ras-Pka pathways; required for dietary restriction-induced lifespan extension; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 20797624]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 20797624]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10675505]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 20797624]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20797624]; GO_process: GO:0007155 - cell adhesion [Evidence IDA] [PMID 11816034]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 20797624]; GO_process: GO:0071470 - cellular response to osmotic stress [Evidence IMP] [PMID 20797624]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 20797624]; GO_process: GO:0007009 - plasma membrane organization [Evidence IMP] [PMID 20797624]; GO_process: GO:0006950 - response to stress [Evidence IEA,IEA]; lipid-binding protein HSP12 1164775..1165140 Sugiyamaella lignohabitans 30035673 AWJ20_364 CDS GAT1 NC_031672.1 1167991 1170957 D Transcriptional activator of nitrogen catabolite repression genes; contains a GATA-1-type zinc finger DNA-binding motif; activity and localization regulated by nitrogen limitation and Ure2p; different translational starts produce two major and two minor isoforms that are differentially regulated and localized; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10799523]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10799523]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 19380492]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence ISA] [PMID 7568152]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 9106207]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IMP] [PMID 19380492]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IGI] [PMID 7568152]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0090294 - nitrogen catabolite activation of transcription [Evidence IGI,IMP] [PMID 7568152]; GO_process: GO:0090294 - nitrogen catabolite activation of transcription [Evidence IGI,IMP] [PMID 8622686]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 7568152]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Gat1p 1167991..1170957 Sugiyamaella lignohabitans 30035684 AWJ20_365 CDS SVL3 NC_031672.1 1171769 1173454 R hypothetical protein; mutant phenotype suggests a potential role in vacuolar function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck; relocalizes from bud neck to cytoplasm upon DNA replication stress; SVL3 has a paralog, PAM1, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IEA]; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 9751732]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Svl3p complement(1171769..1173454) Sugiyamaella lignohabitans 30035695 AWJ20_366 CDS EGD1 NC_031672.1 1178959 1179405 D Subunit beta1 of the nascent polypeptide-associated complex (NAC); involved in protein targeting, associated with cytoplasmic ribosomes; enhances DNA binding of the Gal4p activator; homolog of human BTF3b; EGD1 has a paralog, BTT1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005854 - nascent polypeptide-associated complex [Evidence IDA] [PMID 10219998]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 9482879]; GO_process: GO:0051083 - 'de novo' cotranslational protein folding [Evidence IPI] [PMID 10219998]; GO_process: GO:0006620 - posttranslational protein targeting to membrane [Evidence IGI] [PMID 10518932]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Egd1p 1178959..1179405 Sugiyamaella lignohabitans 30035706 AWJ20_367 CDS GAD1 NC_031672.1 1182000 1183661 D Glutamate decarboxylase; converts glutamate into gamma-aminobutyric acid (GABA) during glutamate catabolism; involved in response to oxidative stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004351 - glutamate decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004351 - glutamate decarboxylase activity [Evidence IMP] [PMID 11031268]; GO_function: GO:0016829 - lyase activity [Evidence IEA,IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11031268]; GO_process: GO:0006538 - glutamate catabolic process [Evidence IMP] [PMID 11031268]; GO_process: GO:0006536 - glutamate metabolic process [Evidence IEA]; glutamate decarboxylase GAD1 1182000..1183661 Sugiyamaella lignohabitans 30035716 AWJ20_368 CDS PCL5 NC_031672.1 1194756 1196012 R Cyclin; interacts with and phosphorylated by Pho85p cyclin-dependent kinase (Cdk), induced by Gcn4p at level of transcription, specifically required for Gcn4p degradation, may be sensor of cellular protein biosynthetic capacity; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 16611745]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19218424]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IDA] [PMID 12101234]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0016242 - negative regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0043433 - negative regulation of sequence-specific DNA binding transcription factor activity [Evidence IMP] [PMID 12101234]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0031647 - regulation of protein stability [Evidence IMP] [PMID 12101234]; Pcl5p complement(1194756..1196012) Sugiyamaella lignohabitans 30035727 AWJ20_369 CDS IVY1 NC_031672.1 1199861 1201993 D Phospholipid-binding protein that interacts with both Ypt7p and Vps33p; may partially counteract the action of Vps33p and vice versa, localizes to the rim of the vacuole as cells approach stationary phase; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12553664]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005543 - phospholipid binding [Evidence IDA] [PMID 12553664]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IGI,IMP,IPI] [PMID 12553664]; Ivy1p 1199861..1201993 Sugiyamaella lignohabitans 30035738 AWJ20_370 CDS TRM5 NC_031672.1 1202211 1203614 R tRNA(m(1)G37)methyltransferase; methylates a tRNA base adjacent to the anticodon that has a role in prevention of frameshifting; highly conserved across Archaea, Bacteria, and Eukarya; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17652090]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 17652090]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]; GO_function: GO:0016423 - tRNA (guanine) methyltransferase activity [Evidence IGI,IMP,ISS] [PMID 11226173]; GO_function: GO:0009019 - tRNA (guanine-N1-)-methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IEA,IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IGI,IMP,ISS] [PMID 11226173]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm5p complement(1202211..1203614) Sugiyamaella lignohabitans 30035750 AWJ20_371 CDS OMS1 NC_031672.1 1204497 1205531 D Protein integral to the mitochondrial membrane; has a conserved methyltransferase motif; multicopy suppressor of respiratory defects caused by OXA1 mutations; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IDA] [PMID 15355998]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS] [PMID 9873020]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032259 - methylation [Evidence IEA]; Oms1p 1204497..1205531 Sugiyamaella lignohabitans 30035761 AWJ20_372 CDS RRP4 NC_031672.1 1205838 1206914 R Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain RNA binding domains; has similarity to human hRrp4p (EXOSC2); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA,IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10465791]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8600032]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9390555]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0071049 - nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription [Evidence IGI] [PMID 11586364]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 9482746]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Rrp4p complement(1205838..1206914) Sugiyamaella lignohabitans 30035772 AWJ20_373 CDS NPL3 NC_031672.1 1207359 1208426 D mRNA-binding protein NPL3 1207359..1208426 Sugiyamaella lignohabitans 30035783 AWJ20_374 CDS AWJ20_374 NC_031672.1 1210128 1212140 R uncharacterized protein complement(1210128..1212140) Sugiyamaella lignohabitans 30035794 AWJ20_375 CDS UBX3 NC_031672.1 1215043 1216905 R Subunit of the DSC ubiquitin ligase complex; UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; ortholog of fission yeast Ucp10; GO_component: GO:0044695 - Dsc E3 ubiquitin ligase complex [Evidence IDA] [PMID 22681890]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Ubx3p complement(1215043..1216905) Sugiyamaella lignohabitans 30035805 AWJ20_376 CDS PIF1 NC_031672.1 1217195 1220254 R DNA helicase PIF1 complement(1217195..1220254) Sugiyamaella lignohabitans 30035816 AWJ20_377 CDS OGG1 NC_031672.1 1221114 1222193 D Nuclear and mitochondrial glycosylase/lyase; specifically excises 7,8-dihydro-8-oxoguanine residues located opposite cytosine or thymine residues in DNA, repairs oxidative damage to mitochondrial DNA, contributes to UVA resistance; GO_component: GO:0031518 - CBF3 complex [Evidence IDA] [PMID 19882662]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11239005]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11239005]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]; GO_function: GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IDA] [PMID 8643552]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 11239005]; GO_process: GO:0006284 - base-excision repair [Evidence IEA]; GO_process: GO:0006285 - base-excision repair, AP site formation [Evidence IDA] [PMID 8643552]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IGI] [PMID 19264809]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IMP] [PMID 19942858]; 8-oxoguanine glycosylase OGG1 1221114..1222193 Sugiyamaella lignohabitans 30035827 AWJ20_378 CDS BUD13 NC_031672.1 1222482 1223486 D Subunit of the RES complex; RES complex is required for nuclear pre-mRNA retention and splicing; involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern due to a specific defect in MATa1 pre-mRNA splicing which leads to haploid gene expression in diploids; GO_component: GO:0070274 - RES complex [Evidence IDA] [PMID 15565172]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11452010]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 11452010]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 15565172]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 15565172]; Bud13p 1222482..1223486 Sugiyamaella lignohabitans 30035838 AWJ20_379 CDS XRN1 NC_031672.1 1223675 1228129 R chromatin-binding exonuclease XRN1 complement(1223675..1228129) Sugiyamaella lignohabitans 30035849 AWJ20_380 CDS AWJ20_380 NC_031672.1 1230438 1232084 D uncharacterized protein 1230438..1232084 Sugiyamaella lignohabitans 30035861 AWJ20_381 CDS NUP49 NC_031672.1 1232454 1233995 D FG-nucleoporin NUP49 1232454..1233995 Sugiyamaella lignohabitans 30035872 AWJ20_382 CDS NTH1 NC_031672.1 1234778 1237324 R Neutral trehalase, degrades trehalose; required for thermotolerance and may mediate resistance to other cellular stresses; may be phosphorylated by Cdc28p; inhibited by Dcs1p; NTH1 has a paralog, NTH2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA,IEA]; GO_function: GO:0004555 - alpha,alpha-trehalase activity [Evidence TAS] [PMID 9308367]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0005993 - trehalose catabolic process [Evidence IEA]; GO_process: GO:0005993 - trehalose catabolic process [Evidence IMP] [PMID 23597844]; GO_process: GO:0005991 - trehalose metabolic process [Evidence IEA]; alpha,alpha-trehalase NTH1 complement(1234778..1237324) Sugiyamaella lignohabitans 30035883 AWJ20_383 CDS FMP41 NC_031672.1 1244056 1244760 D hypothetical protein; GFP-fusion protein is induced in response to the DNA-damaging agent MMS; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Fmp41p 1244056..1244760 Sugiyamaella lignohabitans 30035894 AWJ20_384 CDS DCD1 NC_031672.1 1244931 1246004 R Deoxycytidine monophosphate (dCMP) deaminase; involved in dUMP and dTMP biosynthesis; expression is NOT cell cycle regulated; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004132 - dCMP deaminase activity [Evidence IEA]; GO_function: GO:0004132 - dCMP deaminase activity [Evidence IMP] [PMID 3023902]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006231 - dTMP biosynthetic process [Evidence IMP] [PMID 6373725]; GO_process: GO:0006226 - dUMP biosynthetic process [Evidence IMP] [PMID 6373725]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA]; Dcd1p complement(1244931..1246004) Sugiyamaella lignohabitans 30035905 AWJ20_385 CDS AWJ20_385 NC_031672.1 1247067 1249151 D uncharacterized protein 1247067..1249151 Sugiyamaella lignohabitans 30035916 AWJ20_386 CDS PSD1 NC_031672.1 1250255 1252162 D Phosphatidylserine decarboxylase of the mitochondrial inner membrane; converts phosphatidylserine to phosphatidylethanolamine; regulates mitochondrial fusion and morphology by affecting lipid mixing in the mitochondrial membrane and by influencing the ratio of long to short forms of Mgm1p; partly exposed to the mitochondrial intermembrane space; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 23124206]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IMP] [PMID 8407984]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IDA] [PMID 6427211]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0010636 - positive regulation of mitochondrial fusion [Evidence IMP] [PMID 23045528]; GO_process: GO:0010954 - positive regulation of protein processing [Evidence IMP] [PMID 23045528]; phosphatidylserine decarboxylase 1 1250255..1252162 Sugiyamaella lignohabitans 30035927 AWJ20_387 CDS BSC6 NC_031672.1 1252367 1253797 R hypothetical protein with 8 putative transmembrane segments; ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Bsc6p complement(1252367..1253797) Sugiyamaella lignohabitans 30035938 AWJ20_388 CDS APC1 NC_031672.1 1254736 1257432 R Largest subunit of the Anaphase-Promoting Complex/Cyclosome; APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; component of the platform domain of the APC/C, based on structural analysis; localizes to nuclear foci that become diffuse upon DNA replication stress; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IEA]; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000922 - spindle pole [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16481473]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008054 - cyclin catabolic process [Evidence IMP] [PMID 8895471]; GO_process: GO:0010458 - exit from mitosis [Evidence IMP] [PMID 8895471]; GO_process: GO:0007091 - metaphase/anaphase transition of mitotic cell cycle [Evidence IMP] [PMID 8895471]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 16481473]; anaphase promoting complex subunit 1 complement(1254736..1257432) Sugiyamaella lignohabitans 30035949 AWJ20_389 CDS APC1 NC_031672.1 1257557 1259608 R Anaphase-promoting complex subunit 1 complement(1257557..1259608) Sugiyamaella lignohabitans 30035960 AWJ20_390 CDS FMS1 NC_031672.1 1259902 1261383 R Polyamine oxidase; converts spermine to spermidine, which is required for the essential hypusination modification of translation factor eIF-5A; also involved in pantothenic acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0052904 - N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [Evidence IEA]; GO_function: GO:0052903 - N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0046592 - polyamine oxidase activity [Evidence IMP] [PMID 11154694]; GO_function: GO:0046592 - polyamine oxidase activity [Evidence IDA] [PMID 21067138]; GO_function: GO:0052902 - spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity [Evidence IEA]; GO_function: GO:0052901 - spermine:oxygen oxidoreductase (spermidine-forming) activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006598 - polyamine catabolic process [Evidence IGI,IMP] [PMID 12586697]; polyamine oxidase complement(1259902..1261383) Sugiyamaella lignohabitans 30035972 AWJ20_391 CDS AWJ20_391 NC_031672.1 1262344 1264959 D Uncharacterized protein C2orf16 1262344..1264959 Sugiyamaella lignohabitans 30035983 AWJ20_392 CDS APC2 NC_031672.1 1265210 1267444 D Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; component of the catalytic core of the APC/C; has similarity to cullin Cdc53p; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0031461 - cullin-RING ubiquitin ligase complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16481473]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008054 - cyclin catabolic process [Evidence IMP] [PMID 9430641]; GO_process: GO:0010458 - exit from mitosis [Evidence IGI] [PMID 9430641]; GO_process: GO:0007091 - metaphase/anaphase transition of mitotic cell cycle [Evidence IGI] [PMID 9430641]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 16481473]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; anaphase promoting complex subunit 2 1265210..1267444 Sugiyamaella lignohabitans 30035994 AWJ20_393 CDS cdt2 NC_031672.1 1267683 1269143 R WD repeat protein Cdt2 complement(1267683..1269143) Sugiyamaella lignohabitans 30036005 AWJ20_394 CDS COQ1 NC_031672.1 1273170 1274570 R Hexaprenyl pyrophosphate synthetase; catalyzes the first step in ubiquinone (coenzyme Q) biosynthesis; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 10760477]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000010 - trans-hexaprenyltranstransferase activity [Evidence IMP] [PMID 9708911]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 9708911]; trans-hexaprenyltranstransferase complement(1273170..1274570) Sugiyamaella lignohabitans 30036016 AWJ20_395 CDS RER2 NC_031672.1 1276175 1277113 D Cis-prenyltransferase involved in dolichol synthesis; major enzyme of polyprenol synthesis in both the endoplasmic reticulum (ER) and in lipid droplets; participates in ER protein sorting; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11442630]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 24868093]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9858571]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0045547 - dehydrodolichyl diphosphate synthase activity [Evidence IDA] [PMID 11442630]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IDA] [PMID 17345630]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IDA] [PMID 9858571]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 12911815]; GO_process: GO:0019408 - dolichol biosynthetic process [Evidence IDA] [PMID 10217761]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IDA,IMP] [PMID 9858571]; Rer2p 1276175..1277113 Sugiyamaella lignohabitans 30036027 AWJ20_396 CDS AWJ20_396 NC_031672.1 1276384 1276836 R uncharacterized protein complement(1276384..1276836) Sugiyamaella lignohabitans 30036038 AWJ20_397 CDS RPL11B NC_031672.1 1277376 1277885 R Ribosomal 60S subunit protein L11B; expressed at half the level of Rpl11Ap; involved in ribosomal assembly; depletion causes degradation of 60S proteins and RNA; homologous to mammalian ribosomal protein L11 and bacterial L5; RPL11B has a paralog, RPL11A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 2277060]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L11B complement(1277376..1277885) Sugiyamaella lignohabitans 30036049 AWJ20_398 CDS YRB1 NC_031672.1 1279043 1279279 R Ran GTPase binding protein; involved in nuclear protein import and RNA export, ubiquitin-mediated protein degradation during the cell cycle; shuttles between the nucleus and cytoplasm; is essential; homolog of human RanBP1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10825193]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10825193]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IDA] [PMID 7836422]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10991951]; GO_process: GO:0006405 - RNA export from nucleus [Evidence IMP] [PMID 7489726]; GO_process: GO:0046907 - intracellular transport [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 7489726]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 10991951]; Yrb1p complement(1279043..1279279) Sugiyamaella lignohabitans 30036060 AWJ20_399 CDS YRB1 NC_031672.1 1279657 1280034 R Ran GTPase binding protein; involved in nuclear protein import and RNA export, ubiquitin-mediated protein degradation during the cell cycle; shuttles between the nucleus and cytoplasm; is essential; homolog of human RanBP1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10825193]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10825193]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IDA] [PMID 7836422]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10991951]; GO_process: GO:0006405 - RNA export from nucleus [Evidence IMP] [PMID 7489726]; GO_process: GO:0046907 - intracellular transport [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 7489726]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 10991951]; Yrb1p complement(1279657..1280034) Sugiyamaella lignohabitans 30036071 AWJ20_400 CDS PRE2 NC_031672.1 1281702 1282220 D Beta 5 subunit of the 20S proteasome; responsible for the chymotryptic activity of the proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IC] [PMID 9087403]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 8808631]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 9312134]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0080129 - proteasome core complex assembly [Evidence IMP] [PMID 8808631]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 5 1281702..1282220 Sugiyamaella lignohabitans 30036084 AWJ20_401 CDS FHL1 NC_031672.1 1282518 1284965 R Regulator of ribosomal protein (RP) transcription; has forkhead associated domain that binds phosphorylated proteins; recruits coactivator Ifh1p or corepressor Crf1p to RP gene promoters; also has forkhead DNA-binding domain though in vitro DNA binding assays give inconsistent results; computational analyses suggest it binds DNA directly at highly active RP genes and indirectly through Rap1p motifs at others; suppresses RNA pol III and splicing factor prp4 mutants; GO_component: GO:0032545 - CURI complex [Evidence IDA] [PMID 17452446]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 15620355]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 15692568]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15466158]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15466158]; GO_component: GO:0005667 - transcription factor complex [Evidence IBA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003705 - RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity [Evidence IBA]; GO_function: GO:0001225 - RNA polymerase II transcription coactivator binding [Evidence IPI] [PMID 15620355]; GO_function: GO:0001226 - RNA polymerase II transcription corepressor binding [Evidence IPI] [PMID 15620355]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IBA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0010688 - negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15620355]; GO_process: GO:0010688 - negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IGI] [PMID 7785326]; GO_process: GO:0060963 - positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 15616569]; GO_process: GO:0060963 - positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15620355]; GO_process: GO:0051090 - regulation of sequence-specific DNA binding transcription factor activity [Evidence IBA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Fhl1p complement(1282518..1284965) Sugiyamaella lignohabitans 30036095 AWJ20_402 CDS FHL1 NC_031672.1 1285344 1286306 R Regulator of ribosomal protein (RP) transcription; has forkhead associated domain that binds phosphorylated proteins; recruits coactivator Ifh1p or corepressor Crf1p to RP gene promoters; also has forkhead DNA-binding domain though in vitro DNA binding assays give inconsistent results; computational analyses suggest it binds DNA directly at highly active RP genes and indirectly through Rap1p motifs at others; suppresses RNA pol III and splicing factor prp4 mutants; GO_component: GO:0032545 - CURI complex [Evidence IDA] [PMID 17452446]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 15620355]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 15692568]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15466158]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15466158]; GO_component: GO:0005667 - transcription factor complex [Evidence IBA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003705 - RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity [Evidence IBA]; GO_function: GO:0001225 - RNA polymerase II transcription coactivator binding [Evidence IPI] [PMID 15620355]; GO_function: GO:0001226 - RNA polymerase II transcription corepressor binding [Evidence IPI] [PMID 15620355]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IBA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0010688 - negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15620355]; GO_process: GO:0010688 - negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IGI] [PMID 7785326]; GO_process: GO:0060963 - positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 15616569]; GO_process: GO:0060963 - positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15620355]; GO_process: GO:0051090 - regulation of sequence-specific DNA binding transcription factor activity [Evidence IBA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Fhl1p complement(1285344..1286306) Sugiyamaella lignohabitans 30036106 AWJ20_403 CDS PKH3 NC_031672.1 1287296 1288858 R protein kinase PKH3 complement(1287296..1288858) Sugiyamaella lignohabitans 30036117 AWJ20_404 CDS CTS1 NC_031672.1 1292097 1293983 R Endochitinase; required for cell separation after mitosis; transcriptional activation during the G1 phase of the cell cycle is mediated by transcription factor Ace2p; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11747810]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 19129178]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 1918080]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11747810]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 1918080]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11914276]; GO_function: GO:0008061 - chitin binding [Evidence IEA]; GO_function: GO:0004568 - chitinase activity [Evidence IEA,IEA]; GO_function: GO:0008843 - endochitinase activity [Evidence IDA] [PMID 6799506]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IC] [PMID 3033651]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 1918080]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; Cts1p complement(1292097..1293983) Sugiyamaella lignohabitans 30036128 AWJ20_405 CDS AWJ20_405 NC_031672.1 1295683 1296858 R uncharacterized protein complement(1295683..1296858) Sugiyamaella lignohabitans 30036139 AWJ20_406 CDS SEC8 NC_031672.1 1298203 1301328 R Essential 121 kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane prior to SNARE-mediated fusion; involved in ER and Golgi inheritance in small buds; relocalizes away from bud neck upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12960429]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9491896]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12960429]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17717527]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 7615633]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 9491896]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000145 - exocyst [Evidence IEA]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 1512289]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 7615633]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9491896]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0048313 - Golgi inheritance [Evidence IMP] [PMID 15596717]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 7026045]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IMP] [PMID 15596717]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 6996832]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Sec8p complement(1298203..1301328) Sugiyamaella lignohabitans 30036150 AWJ20_407 CDS VPS15 NC_031672.1 1302101 1306153 R ubiquitin-binding serine/threonine protein kinase VPS15 complement(1302101..1306153) Sugiyamaella lignohabitans 30036161 AWJ20_408 CDS AWJ20_408 NC_031672.1 1311922 1312146 D top hit is XP_006683298.1 originated in Batrachochytrium dendrobatidis JAM81; GTP-binding protein 1311922..1312146 Sugiyamaella lignohabitans 30036172 AWJ20_409 CDS AWJ20_409 NC_031672.1 1314763 1317332 D uncharacterized protein join(1314763..1316065,1316980..1317332) Sugiyamaella lignohabitans 30036183 AWJ20_410 CDS MSN4 NC_031672.1 1316552 1318852 R stress-responsive transcriptional activator MSN4 complement(1316552..1318852) Sugiyamaella lignohabitans 30036195 AWJ20_411 CDS MDH1 NC_031672.1 1327957 1328658 R Mitochondrial malate dehydrogenase; catalyzes interconversion of malate and oxaloacetate; involved in the tricarboxylic acid (TCA) cycle; phosphorylated; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 9774331]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 10777592]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_function: GO:0030060 - L-malate dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0030060 - L-malate dehydrogenase activity [Evidence IMP] [PMID 10777592]; GO_function: GO:0030060 - L-malate dehydrogenase activity [Evidence IDA] [PMID 1898005]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016615 - malate dehydrogenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 3312168]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 18381895]; GO_process: GO:0006108 - malate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 18381895]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IMP] [PMID 3312168]; malate dehydrogenase MDH1 complement(1327957..1328658) Sugiyamaella lignohabitans 30036206 AWJ20_412 CDS AIM9 NC_031672.1 1330235 1331950 R hypothetical protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; null mutant displays elevated frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Aim9p complement(1330235..1331950) Sugiyamaella lignohabitans 30036217 AWJ20_413 CDS INP1 NC_031672.1 1333813 1336509 D Peripheral membrane protein of peroxisomes; involved in peroxisomal inheritance; recruitment to peroxisomes is mediated by interaction with Pex3p at the peroxisomal membrane; GO_component: GO:0005780 - extrinsic component of intraperoxisomal membrane [Evidence IEA]; GO_component: GO:0005780 - extrinsic component of intraperoxisomal membrane [Evidence IDA] [PMID 15928207]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 14562095]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 23900285]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP] [PMID 23900285]; GO_process: GO:0045033 - peroxisome inheritance [Evidence IEA]; GO_process: GO:0045033 - peroxisome inheritance [Evidence IMP,IPI] [PMID 15928207]; Inp1p 1333813..1336509 Sugiyamaella lignohabitans 30036228 AWJ20_414 CDS TOM40 NC_031672.1 1337852 1338958 R Component of the TOM (translocase of outer membrane) complex; responsible for recognition and initial import steps for all mitochondrially directed proteins; constitutes the core element of the protein conducting pore; pre-Tom40p is phosphorylated by PKA, which impairs its import into mitochondria under non-respiratory conditions; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005742 - mitochondrial outer membrane translocase complex [Evidence IDA] [PMID 9774667]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0046930 - pore complex [Evidence IEA]; GO_function: GO:0015288 - porin activity [Evidence IEA]; GO_function: GO:0015266 - protein channel activity [Evidence IEA]; GO_function: GO:0015266 - protein channel activity [Evidence IDA] [PMID 9774109]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 15590639]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tom40p complement(1337852..1338958) Sugiyamaella lignohabitans 30036239 AWJ20_415 CDS AWJ20_415 NC_031672.1 1339430 1340887 R uncharacterized protein complement(1339430..1340887) Sugiyamaella lignohabitans 30036250 AWJ20_416 CDS AWJ20_416 NC_031672.1 1342880 1343473 R uncharacterized protein complement(1342880..1343473) Sugiyamaella lignohabitans 30036261 AWJ20_417 CDS VPH1 NC_031672.1 1344227 1346752 D Subunit a of the vacuolar-ATPase V0 domain; one of two isoforms (Stv1p and Vph1p); Stv1p is located in V-ATPase complexes of the Golgi and endosomes while Vph1p is located in V-ATPase complexes of the vacuole; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11592965]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11948198]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 11592965]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033179 - proton-transporting V-type ATPase, V0 domain [Evidence IEA]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence IEA]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence IDA,ISS] [PMID 7514599]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IGI,ISS] [PMID 7514599]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IEP,IGI,IMP,ISS] [PMID 11278748]; GO_process: GO:0007035 - vacuolar acidification [Evidence IGI] [PMID 7514599]; H(+)-transporting V0 sector ATPase subunit a 1344227..1346752 Sugiyamaella lignohabitans 30036272 AWJ20_418 CDS LYS21 NC_031672.1 1347956 1349317 R Homocitrate synthase isozyme; catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, which is the first step in the lysine biosynthesis pathway; LYS21 has a paralog, LYS20, that arose from the whole genome duplication; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9099739]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004410 - homocitrate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004410 - homocitrate synthase activity [Evidence ISS] [PMID 9099739]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0046912 - transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer [Evidence IEA]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA,IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IGI,IMP] [PMID 18524920]; homocitrate synthase LYS21 complement(1347956..1349317) Sugiyamaella lignohabitans 30036283 AWJ20_419 CDS MOT1 NC_031672.1 1352683 1358226 D Essential protein involved in regulation of transcription; removes Spt15p (TBP) from DNA via its C-terminal ATPase activity; may have a role in ensuring that soluble TBP is available to bind TATA-less promoters; forms a complex with TBP that binds TATA DNA with high affinity but with altered specificity; the Mot1p-Spt15p-DNA ternary complex contains unbent DNA; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000228 - nuclear chromosome [Evidence IDA] [PMID 11880621]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21976730]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9234740]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 22298788]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IPI] [PMID 8083216]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IMP] [PMID 24459134]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 17296733]; GO_process: GO:0045898 - regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 15861138]; GO_process: GO:0045898 - regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 21976730]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9234740]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IDA,IMP] [PMID 17296733]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Mot1p 1352683..1358226 Sugiyamaella lignohabitans 30036294 AWJ20_420 CDS CLP1 NC_031672.1 1358664 1359671 R Component of the cleavage and polyadenylation factor I (CF I); CF 1, composed of the CF 1A complex (Rna14p, Rna15p, Clp1p, Pcf11p) and Hrp1, is involved in cleavage and polyadenylation of mRNA 3' ends; involved in both the endonucleolyitc cleavage and polyadenylation steps of mRNA 3'-end maturation; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IEA,IEA]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 11344258]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 11344258]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IEA,IEA]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IDA] [PMID 11344258]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Clp1p complement(1358664..1359671) Sugiyamaella lignohabitans 30036306 AWJ20_421 CDS AWJ20_421 NC_031672.1 1360356 1360817 D uncharacterized protein 1360356..1360817 Sugiyamaella lignohabitans 30036317 AWJ20_423 CDS GDT1 NC_031672.1 1361869 1363554 R hypothetical protein involved in calcium homeostasis; localizes to the cis- and medial-Golgi apparatus; GFP-fusion protein localizes to the vacuole; TMEM165, a human gene which causes Congenital Disorders of Glycosylation is orthologous and functionally complements the null allele; expression pattern and physical interactions suggest a possible role in ribosome biogenesis; expression reduced in a gcr1 null mutant; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 23569283]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 23569283]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IGI,IMP] [PMID 23569283]; Gdt1p complement(1361869..1363554) Sugiyamaella lignohabitans 30036339 AWJ20_424 CDS SET6 NC_031672.1 1365057 1366328 D SET domain hypothetical protein; deletion heterozygote is sensitive to compounds that target ergosterol biosynthesis, may be involved in compound availability; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032259 - methylation [Evidence IEA]; Set6p 1365057..1366328 Sugiyamaella lignohabitans 30036350 AWJ20_425 CDS AWJ20_425 NC_031672.1 1368542 1368889 R uncharacterized protein complement(1368542..1368889) Sugiyamaella lignohabitans 30036361 AWJ20_426 CDS REV3 NC_031672.1 1374074 1374424 D Catalytic subunit of DNA polymerase zeta; involved in translesion synthesis during post-replication repair; required for mutagenesis induced by DNA damage; involved in double-strand break repair; forms a complex with Rev7p, Pol31p and Pol32p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16452144]; GO_component: GO:0000790 - nuclear chromatin [Evidence IPI] [PMID 16546083]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0016035 - zeta DNA polymerase complex [Evidence IDA] [PMID 8658138]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 8658138]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 12514101]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 11313481]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 17248528]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IGI] [PMID 9765213]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; Rev3p 1374074..1374424 Sugiyamaella lignohabitans 30036372 AWJ20_427 CDS REV3 NC_031672.1 1374535 1378698 D Catalytic subunit of DNA polymerase zeta; involved in translesion synthesis during post-replication repair; required for mutagenesis induced by DNA damage; involved in double-strand break repair; forms a complex with Rev7p, Pol31p and Pol32p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16452144]; GO_component: GO:0000790 - nuclear chromatin [Evidence IPI] [PMID 16546083]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0016035 - zeta DNA polymerase complex [Evidence IDA] [PMID 8658138]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 8658138]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 12514101]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 11313481]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 17248528]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IGI] [PMID 9765213]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; Rev3p 1374535..1378698 Sugiyamaella lignohabitans 30036383 AWJ20_428 CDS MLH3 NC_031672.1 1378816 1380525 R Protein involved in DNA mismatch repair and meiotic recombination; involved in crossing-over during meiotic recombination; forms a complex with Mlh1p; mammalian homolog is implicated mammalian microsatellite instability; GO_component: GO:0032390 - MutLbeta complex [Evidence IEA]; GO_component: GO:0097587 - MutLgamma complex [Evidence IPI] [PMID 9770499]; GO_component: GO:0005712 - chiasma [Evidence IBA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 10570173]; GO_component: GO:0000795 - synaptonemal complex [Evidence IBA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IBA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 23316435]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IBA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 23316435]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 10679328]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 9770499]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IEA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 10570173]; mismatch repair protein MLH3 complement(1378816..1380525) Sugiyamaella lignohabitans 30036394 AWJ20_429 CDS RPL21B NC_031672.1 1384500 1384823 D Ribosomal 60S subunit protein L21B; homologous to mammalian ribosomal protein L21, no bacterial homolog; RPL21B has a paralog, RPL21A, that arose from the whole genome duplication; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L21B 1384500..1384823 Sugiyamaella lignohabitans 30036405 AWJ20_430 CDS RIM2 NC_031672.1 1385726 1386871 D Mitochondrial pyrimidine nucleotide transporter; imports pyrimidine nucleoside triphosphates and exports pyrimidine nucleoside monophosphates; member of the mitochondrial carrier family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 7891656]; GO_function: GO:0015218 - pyrimidine nucleotide transmembrane transporter activity [Evidence IDA] [PMID 16194150]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 7891656]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 7891656]; GO_process: GO:0006864 - pyrimidine nucleotide transport [Evidence IDA] [PMID 16194150]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 16194150]; GO_process: GO:0006810 - transport [Evidence IEA]; Rim2p 1385726..1386871 Sugiyamaella lignohabitans 30036417 AWJ20_431 CDS APC5 NC_031672.1 1386980 1389841 R Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; component of the platform domain of the APC/C, based on structural analysis; relative distribution to nuclear foci decreases upon DNA replication stress; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16481473]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0031497 - chromatin assembly [Evidence IMP] [PMID 12399376]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 16481473]; anaphase promoting complex subunit 5 complement(1386980..1389841) Sugiyamaella lignohabitans 30036428 AWJ20_432 CDS DNA2 NC_031672.1 1391973 1396220 D bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 1391973..1396220 Sugiyamaella lignohabitans 30036439 AWJ20_433 CDS ITR1 NC_031672.1 1401066 1401611 R Myo-inositol transporter; member of the sugar transporter superfamily; expression is repressed by inositol and choline via Opi1p and derepressed via Ino2p and Ino4p; relative distribution to the vacuole increases upon DNA replication stress; ITR1 has a paralog, ITR2, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 2040626]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16233524]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0005365 - myo-inositol transmembrane transporter activity [Evidence IMP,ISS] [PMID 2040626]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015798 - myo-inositol transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 24603354]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; myo-inositol transporter ITR1 complement(1401066..1401611) Sugiyamaella lignohabitans 30036450 AWJ20_439 CDS RTN1 NC_031672.1 1406247 1407311 R Reticulon protein; stabilizes membrane curvature; involved in nuclear pore assembly and maintenance of tubular ER morphology; mutant overexpressing RTN1 shows increase in tubular ER; interacts with exocyst subunit Sec6p, Yip3p, and Sbh1p; more abundant than Rtn2p; member of the RTNLA subfamily; mutants have reduced phosphatidylserine transfer between the ER and mitochondria; RTN1 has a paralog, RTN2, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 16002643]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 16624861]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16002643]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0071782 - endoplasmic reticulum tubular network [Evidence IDA] [PMID 16469703]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 16624861]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IGI] [PMID 19665976]; GO_process: GO:0071788 - endoplasmic reticulum tubular network maintenance [Evidence IGI] [PMID 21502358]; GO_process: GO:0071786 - endoplasmic reticulum tubular network organization [Evidence IGI,IMP] [PMID 16469703]; GO_process: GO:0071786 - endoplasmic reticulum tubular network organization [Evidence IMP] [PMID 16624861]; GO_process: GO:0071786 - endoplasmic reticulum tubular network organization [Evidence IGI] [PMID 18309084]; GO_process: GO:0071786 - endoplasmic reticulum tubular network organization [Evidence IGI] [PMID 18442980]; GO_process: GO:0071786 - endoplasmic reticulum tubular network organization [Evidence IGI,IPI] [PMID 19665976]; GO_process: GO:0051292 - nuclear pore complex assembly [Evidence IGI] [PMID 19273614]; Rtn1p complement(1406247..1407311) Sugiyamaella lignohabitans 30036516 AWJ20_440 CDS SLA2 NC_031672.1 1409379 1412549 D Adaptor protein that links actin to clathrin and endocytosis; involved in membrane cytoskeleton assembly and cell polarization; present in the actin cortical patch of the emerging bud tip; dimer in vivo; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10397764]; GO_component: GO:0005938 - cell cortex [Evidence IEA]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11302750]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0005543 - phospholipid binding [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IGI,IPI] [PMID 14704157]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 10397764]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 10652251]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8380177]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence TAS] [PMID 10652251]; Sla2p 1409379..1412549 Sugiyamaella lignohabitans 30036528 AWJ20_441 CDS APN2 NC_031672.1 1414570 1416462 R Class II abasic (AP) endonuclease involved in repair of DNA damage; homolog of human HAP1 and E. coli exoIII; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 10806210]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IDA] [PMID 10806210]; GO_function: GO:0008311 - double-stranded DNA 3'-5' exodeoxyribonuclease activity [Evidence IDA] [PMID 11238902]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IDA] [PMID 11238902]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006284 - base-excision repair [Evidence IGI] [PMID 9765213]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; DNA-(apurinic or apyrimidinic site) lyase APN2 complement(1414570..1416462) Sugiyamaella lignohabitans 30036539 AWJ20_442 CDS pep3 NC_031672.1 1416894 1419995 R ubiquitin-protein ligase E3 (predicted) complement(1416894..1419995) Sugiyamaella lignohabitans 30036550 AWJ20_443 CDS MSS51 NC_031672.1 1422274 1423596 D Specific translational activator for the mitochondrial COX1 mRNA; loosely associated with the matrix face of the mitochondrial inner membrane; localizes to vacuole membrane in response to H2O2; influences both COX1 mRNA translation and Cox1p assembly into cytochrome c oxidase; binds to heme B, which may be a mechanism for sensing oxygen levels in order to regulate cytochrome c oxidase biogenesis; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 15306853]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005774 - vacuolar membrane [Evidence IDA] [PMID 23509072]; GO_function: GO:0045182 - translation regulator activity [Evidence IMP] [PMID 19710419]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0097034 - mitochondrial respiratory chain complex IV biogenesis [Evidence IMP] [PMID 15306853]; GO_process: GO:0070131 - positive regulation of mitochondrial translation [Evidence IGI,IMP,IPI] [PMID 15306853]; GO_process: GO:0070131 - positive regulation of mitochondrial translation [Evidence IMP] [PMID 19710419]; Mss51p 1422274..1423596 Sugiyamaella lignohabitans 30036561 AWJ20_444 CDS SQT1 NC_031672.1 1428273 1429601 D Protein involved in 60S ribosomal subunit assembly or modification; contains multiple WD repeats; interacts with Qsr1p in a two-hybrid assay; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9271392]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IDA] [PMID 9271392]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IGI,IMP] [PMID 9271392]; Sqt1p 1428273..1429601 Sugiyamaella lignohabitans 30036572 AWJ20_445 CDS RIB5 NC_031672.1 1430334 1432491 R Riboflavin synthase; catalyzes the last step of the riboflavin biosynthesis pathway; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004746 - riboflavin synthase activity [Evidence IEA,IEA]; GO_function: GO:0004746 - riboflavin synthase activity [Evidence IDA,ISS] [PMID 7814407]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 7814407]; riboflavin synthase complement(join(1430334..1431034,1432374..1432491)) Sugiyamaella lignohabitans 30036583 AWJ20_446 CDS AWJ20_446 NC_031672.1 1430530 1431138 D uncharacterized protein 1430530..1431138 Sugiyamaella lignohabitans 30036594 AWJ20_447 CDS AWJ20_447 NC_031672.1 1441797 1443305 D uncharacterized protein 1441797..1443305 Sugiyamaella lignohabitans 30036605 AWJ20_448 CDS AWJ20_448 NC_031672.1 1444045 1445328 D acyl-CoA dehydrogenase, mitochondrial precursor 1444045..1445328 Sugiyamaella lignohabitans 30036616 AWJ20_449 CDS NOP13 NC_031672.1 1445761 1446945 D Nucleolar protein found in preribosomal complexes; contains an RNA recognition motif (RRM); relative distribution to the nucleolus increases upon DNA replication stress; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11452019]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030684 - preribosome [Evidence IDA] [PMID 17922018]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 11452019]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Nop13p 1445761..1446945 Sugiyamaella lignohabitans 30036627 AWJ20_450 CDS AWJ20_450 NC_031672.1 1447096 1450629 R uncharacterized protein complement(1447096..1450629) Sugiyamaella lignohabitans 30036639 AWJ20_451 CDS GLY1 NC_031672.1 1451958 1452986 D Threonine aldolase; catalyzes the cleavage of L-allo-threonine and L-threonine to glycine; involved in glycine biosynthesis; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12676688]; GO_function: GO:0008732 - L-allo-threonine aldolase activity [Evidence IDA] [PMID 9151955]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA,IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0004793 - threonine aldolase activity [Evidence IDA] [PMID 9163906]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006545 - glycine biosynthetic process [Evidence IEA]; GO_process: GO:0006545 - glycine biosynthetic process [Evidence IDA] [PMID 3086094]; GO_process: GO:0006567 - threonine catabolic process [Evidence IDA] [PMID 3086094]; threonine aldolase GLY1 1451958..1452986 Sugiyamaella lignohabitans 30036650 AWJ20_452 CDS AWJ20_452 NC_031672.1 1455254 1455754 R uncharacterized protein complement(1455254..1455754) Sugiyamaella lignohabitans 30036661 AWJ20_453 CDS MDM12 NC_031672.1 1457087 1458373 D ERMES complex subunit MDM12 1457087..1458373 Sugiyamaella lignohabitans 30036672 AWJ20_455 CDS AWJ20_455 NC_031672.1 1459089 1460003 D uncharacterized protein 1459089..1460003 Sugiyamaella lignohabitans 30036694 AWJ20_459 CDS AWJ20_459 NC_031672.1 1464272 1465789 D uncharacterized protein join(1464272..1464415,1464809..1465789) Sugiyamaella lignohabitans 30036738 AWJ20_460 CDS URA6 NC_031672.1 1467236 1468231 D Uridylate kinase; catalyzes the seventh enzymatic step in the de novo biosynthesis of pyrimidines, converting uridine monophosphate (UMP) into uridine-5'-diphosphate (UDP); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8391780]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8391780]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IDA,IGI] [PMID 1333436]; GO_function: GO:0004127 - cytidylate kinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0019201 - nucleotide kinase activity [Evidence IEA]; GO_function: GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0009041 - uridylate kinase activity [Evidence IDA,IMP] [PMID 1655742]; GO_function: GO:0009041 - uridylate kinase activity [Evidence IDA] [PMID 2549068]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IDA] [PMID 8391780]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IDA] [PMID 2549068]; GO_process: GO:0046939 - nucleotide phosphorylation [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]; bifunctional uridylate/adenylate kinase 1467236..1468231 Sugiyamaella lignohabitans 30036750 AWJ20_461 CDS SNU23 NC_031672.1 1469487 1470095 R Component of the U4/U6.U5 snRNP complex; involved in mRNA splicing via spliceosome; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 10449419]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 11720284]; Snu23p complement(1469487..1470095) Sugiyamaella lignohabitans 30036761 AWJ20_462 CDS CMK2 NC_031672.1 1471508 1472740 R calmodulin-dependent protein kinase CMK2 complement(1471508..1472740) Sugiyamaella lignohabitans 30036772 AWJ20_463 CDS DBP10 NC_031672.1 1474171 1477122 D Putative ATP-dependent RNA helicase of the DEAD-box protein family; constituent of 66S pre-ribosomal particles; essential protein involved in ribosome biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10871363]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IPI] [PMID 16095611]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IGI,IPI] [PMID 16803892]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 10077188]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10871363]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10871363]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Dbp10p 1474171..1477122 Sugiyamaella lignohabitans 30036783 AWJ20_464 CDS AWJ20_464 NC_031672.1 1478034 1478756 D uncharacterized protein 1478034..1478756 Sugiyamaella lignohabitans 30036794 AWJ20_465 CDS RPN9 NC_031672.1 1479618 1480676 R Non-ATPase regulatory subunit of the 26S proteasome; similar to putative proteasomal subunits in other species; null mutant is temperature sensitive and exhibits cell cycle and proteasome assembly defects; protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 10490597]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP] [PMID 10490597]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 10490597]; proteasome regulatory particle lid subunit RPN9 complement(1479618..1480676) Sugiyamaella lignohabitans 30036805 AWJ20_466 CDS AWJ20_466 NC_031672.1 1481780 1482940 D uncharacterized protein 1481780..1482940 Sugiyamaella lignohabitans 30036816 AWJ20_467 CDS HTD2 NC_031672.1 1483081 1484094 R Mitochondrial 3-hydroxyacyl-thioester dehydratase; involved in fatty acid biosynthesis, required for respiratory growth and for normal mitochondrial morphology; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15387819]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0019171 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity [Evidence IEA]; GO_function: GO:0019171 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity [Evidence IDA] [PMID 15387819]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IGI,ISS] [PMID 15387819]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; hydroxyacyl-thioester dehydratase HTD2 complement(1483081..1484094) Sugiyamaella lignohabitans 30036826 AWJ20_468 CDS RPF1 NC_031672.1 1484516 1485406 D Protein involved in assembly and export of the large ribosomal subunit; nucleolar protein; constituent of 66S pre-ribosomal particles; contains a sigma(70)-like motif, which is thought to bind RNA; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11864606]; GO_component: GO:0005730 - nucleolus [Evidence IPI] [PMID 11864607]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0042134 - rRNA primary transcript binding [Evidence IPI] [PMID 11864606]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11864606]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11864606]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 11864607]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 16581791]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rpf1p 1484516..1485406 Sugiyamaella lignohabitans 30036837 AWJ20_470 CDS CYM1 NC_031672.1 1486328 1489417 R Lysine-specific metalloprotease of the pitrilysin family; metalloprotease of the intermembrane space; degrades proteins and presequence peptides cleaved from imported proteins; required for normal mitochondrial morphology; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 15772085]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15606766]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA] [PMID 15606766]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IMP] [PMID 15772085]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IDA] [PMID 15606766]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IMP] [PMID 15772085]; Cym1p complement(1486328..1489417) Sugiyamaella lignohabitans 30036860 AWJ20_471 CDS MSN5 NC_031672.1 1491948 1495244 D Karyopherin; involved in nuclear import and export of proteins, including import of replication protein A and export of Far1p and transcription factors Swi5p, Swi6p, Msn2p, and Pho4p; required for re-export of mature tRNAs after their retrograde import from the cytoplasm; exportin-5 homolog; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17020589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10485850]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10545454]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17020589]; GO_function: GO:0008262 - importin-alpha export receptor activity [Evidence IDA] [PMID 9214382]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12697814]; GO_process: GO:0006611 - protein export from nucleus [Evidence IDA] [PMID 12697814]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 23716718]; GO_process: GO:0006611 - protein export from nucleus [Evidence IDA] [PMID 9853758]; GO_process: GO:0071528 - tRNA re-export from nucleus [Evidence IGI] [PMID 20032305]; Msn5p 1491948..1495244 Sugiyamaella lignohabitans 30036871 AWJ20_472 CDS NCP1 NC_031672.1 1495477 1497612 R NADP-cytochrome P450 reductase; involved in ergosterol biosynthesis; associated and coordinately regulated with Erg11p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003958 - NADPH-hemoprotein reductase activity [Evidence IEA,IEA]; GO_function: GO:0003958 - NADPH-hemoprotein reductase activity [Evidence IDA] [PMID 9087488]; GO_function: GO:0009055 - electron carrier activity [Evidence IDA] [PMID 11485306]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 9468503]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; Ncp1p complement(1495477..1497612) Sugiyamaella lignohabitans 30036882 AWJ20_473 CDS AWJ20_473 NC_031672.1 1502673 1506145 D uncharacterized protein join(1502673..1502766,1502964..1506145) Sugiyamaella lignohabitans 30036893 AWJ20_474 CDS AWJ20_474 NC_031672.1 1506718 1508040 D uncharacterized protein 1506718..1508040 Sugiyamaella lignohabitans 30036904 AWJ20_475 CDS RAD4 NC_031672.1 1508296 1510590 D Protein that recognizes and binds damaged DNA (with Rad23p) during NER; subunit of Nuclear Excision Repair Factor 2 (NEF2); also involved, with Rad23p, in turnover of ubiquitylated proteins; NER stands for nucleotide excision repair; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19889839]; GO_component: GO:0000111 - nucleotide-excision repair factor 2 complex [Evidence IDA] [PMID 7768886]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19889839]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9813069]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9837874]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 18936173]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 19889839]; Rad4p 1508296..1510590 Sugiyamaella lignohabitans 30036915 AWJ20_476 CDS GPI11 NC_031672.1 1510799 1511644 R ER membrane protein involved in a late step of GPI anchor assembly; involved in the addition of phosphoethanolamine to the multiply mannosylated glycosylphosphatidylinositol (GPI) intermediate; human PIG-Fp is a functional homolog; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence ISS] [PMID 10793139]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 10793139]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0051377 - mannose-ethanolamine phosphotransferase activity [Evidence IMP] [PMID 10793139]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 10793139]; Gpi11p complement(1510799..1511644) Sugiyamaella lignohabitans 30036926 AWJ20_477 CDS CFT1 NC_031672.1 1512277 1515195 D RNA-binding subunit of the mRNA cleavage and polyadenylation factor; involved in poly(A) site recognition and required for both pre-mRNA cleavage and polyadenylation, 51% sequence similarity with mammalian AAUAA-binding subunit of CPSF; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 10523662]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9099738]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 12145212]; Cft1p 1512277..1515195 Sugiyamaella lignohabitans 30036937 AWJ20_478 CDS CFT1 NC_031672.1 1515513 1517081 D RNA-binding subunit of the mRNA cleavage and polyadenylation factor; involved in poly(A) site recognition and required for both pre-mRNA cleavage and polyadenylation, 51% sequence similarity with mammalian AAUAA-binding subunit of CPSF; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 10523662]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9099738]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 12145212]; Cft1p 1515513..1517081 Sugiyamaella lignohabitans 30036948 AWJ20_479 CDS MKT1 NC_031672.1 1517294 1519732 R Protein that forms a complex with Pbp1p; complex may mediate posttranscriptional regulation of HO; involved in propagation of M2 dsRNA satellite of L-A virus; allelic variation affects mitochondrial genome stability, drug resistance, and more; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 15082763]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence ISS] [PMID 15082763]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 18617998]; GO_process: GO:0044419 - interspecies interaction between organisms [Evidence IMP] [PMID 7532890]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Mkt1p complement(1517294..1519732) Sugiyamaella lignohabitans 30036959 AWJ20_480 CDS AWJ20_480 NC_031672.1 1520037 1521020 R conserved hypothetical protein, similar to Fe II, 2-oxoglutarate-dependent dioxygenases; allele of CaO19.1306; putative dioxygenase complement(1520037..1521020) Sugiyamaella lignohabitans 30036971 AWJ20_481 CDS OAC1 NC_031672.1 1522927 1523742 D Mitochondrial inner membrane transporter; transports oxaloacetate, sulfate, thiosulfate, and isopropylmalate; member of the mitochondrial carrier family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10428783]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0034658 - isopropylmalate transmembrane transporter activity [Evidence IDA] [PMID 18682385]; GO_function: GO:1901239 - malonate(1-) transmembrane transporter activity [Evidence IDA] [PMID 10428783]; GO_function: GO:0015131 - oxaloacetate transmembrane transporter activity [Evidence IDA] [PMID 10428783]; GO_function: GO:0015116 - sulfate transmembrane transporter activity [Evidence IDA] [PMID 10428783]; GO_process: GO:0034659 - isopropylmalate transport [Evidence IDA] [PMID 18682385]; GO_process: GO:0015729 - oxaloacetate transport [Evidence IDA] [PMID 10428783]; GO_process: GO:0008272 - sulfate transport [Evidence IDA] [PMID 10428783]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Oac1p 1522927..1523742 Sugiyamaella lignohabitans 30036982 AWJ20_482 CDS MUB1 NC_031672.1 1525246 1528377 R MYND domain-containing protein; required for ubiquitination and turnover of Rpn4p; interacts with Ubr2p (E3) and indirectly with Rad6p (E2); short-lived protein degraded in a Ubr2p/Rad6p dependent manner; similar to the A. nidulans samB gene; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IDA,IMP] [PMID 18070918]; GO_process: GO:0007116 - regulation of cell budding [Evidence IMP,ISS] [PMID 9427754]; Mub1p complement(1525246..1528377) Sugiyamaella lignohabitans 30036993 AWJ20_483 CDS AWJ20_483 NC_031672.1 1531667 1532677 D uncharacterized protein 1531667..1532677 Sugiyamaella lignohabitans 30037004 AWJ20_484 CDS HKR1 NC_031672.1 1537930 1542065 D Mucin family member that functions as an osmosensor in the HOG pathway; functions in the Sho1p-mediated HOG pathway with Msb2p; proposed to be a negative regulator of filamentous growth; mutant displays defects in beta-1,3 glucan synthesis and bud site selection; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,ISS] [PMID 8550469]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 17627274]; GO_function: GO:0005034 - osmosensor activity [Evidence IGI] [PMID 17627274]; GO_process: GO:0006075 - (1->3)-beta-D-glucan biosynthetic process [Evidence IMP] [PMID 8550469]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 8550469]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 8550469]; GO_process: GO:0006972 - hyperosmotic response [Evidence IGI] [PMID 17627274]; GO_process: GO:0007232 - osmosensory signaling pathway via Sho1 osmosensor [Evidence IGI,IPI] [PMID 17627274]; Hkr1p join(1537930..1540471,1540591..1542065) Sugiyamaella lignohabitans 30037015 AWJ20_485 CDS AWJ20_485 NC_031672.1 1538145 1538846 R uncharacterized protein complement(1538145..1538846) Sugiyamaella lignohabitans 30037026 AWJ20_486 CDS AWJ20_486 NC_031672.1 1539309 1539716 R putative MAP7 domain-containing protein 3 complement(1539309..1539716) Sugiyamaella lignohabitans 30037037 AWJ20_487 CDS BGL2 NC_031672.1 1543961 1545406 D Endo-beta-1,3-glucanase; major protein of the cell wall, involved in cell wall maintenance; involved in incorporation of newly synthesized mannoprotein molecules into the cell wall; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 2509432]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 9748433]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IMP] [PMID 7851411]; GO_function: GO:0008061 - chitin binding [Evidence IEA]; GO_function: GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity [Evidence IDA] [PMID 8458852]; GO_function: GO:0004338 - glucan exo-1,3-beta-glucosidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16986442]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Bgl2p 1543961..1545406 Sugiyamaella lignohabitans 30037048 AWJ20_488 CDS AWJ20_488 NC_031672.1 1547014 1549896 D uncharacterized protein 1547014..1549896 Sugiyamaella lignohabitans 30037059 AWJ20_489 CDS AWJ20_489 NC_031672.1 1550075 1551514 R uncharacterized protein complement(1550075..1551514) Sugiyamaella lignohabitans 30037070 AWJ20_490 CDS PPN1 NC_031672.1 1552000 1553949 R Vacuolar endopolyphosphatase with a role in phosphate metabolism; functions as a homodimer; relocalizes from vacuole to cytoplasm upon DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA,IMP] [PMID 11566881]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 16862600]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0000298 - endopolyphosphatase activity [Evidence IEA,IEA]; GO_function: GO:0000298 - endopolyphosphatase activity [Evidence IDA,IMP] [PMID 11447286]; GO_function: GO:0004309 - exopolyphosphatase activity [Evidence IEA]; GO_function: GO:0004309 - exopolyphosphatase activity [Evidence IMP] [PMID 16862600]; GO_function: GO:0004309 - exopolyphosphatase activity [Evidence IDA] [PMID 17009950]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006798 - polyphosphate catabolic process [Evidence IDA] [PMID 17009950]; GO_process: GO:0006797 - polyphosphate metabolic process [Evidence IDA,IMP] [PMID 11447286]; Ppn1p complement(1552000..1553949) Sugiyamaella lignohabitans 30037082 AWJ20_491 CDS AWJ20_491 NC_031672.1 1554174 1555382 R uncharacterized protein complement(join(1554174..1554831,1555270..1555382)) Sugiyamaella lignohabitans 30037093 AWJ20_492 CDS AWJ20_492 NC_031672.1 1555990 1556358 R gnat family complement(1555990..1556358) Sugiyamaella lignohabitans 30037104 AWJ20_493 CDS STE6 NC_031672.1 1556933 1560865 R Plasma membrane ATP-binding cassette (ABC) transporter; required for the export of a-factor, catalyzes ATP hydrolysis coupled to a-factor transport; contains 12 transmembrane domains and two ATP binding domains; expressed only in MATa cells; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8045256]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12374868]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 7679674]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 7679674]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 11389139]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 8626301]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0000770 - peptide pheromone export [Evidence IMP] [PMID 2569166]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette alpha-factor transporter STE6 complement(1556933..1560865) Sugiyamaella lignohabitans 30037115 AWJ20_494 CDS AWJ20_494 NC_031672.1 1561423 1561788 R uncharacterized protein complement(1561423..1561788) Sugiyamaella lignohabitans 30037126 AWJ20_495 CDS SNF3 NC_031672.1 1568109 1569869 D Plasma membrane low glucose sensor, regulates glucose transport; contains 12 predicted transmembrane segments and a long C-terminal tail required for induction of hexose transporters; also senses fructose and mannose; SNF3 has a paralog, RGT2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2406560]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0005536 - glucose binding [Evidence TAS] [PMID 10477308]; GO_function: GO:0005355 - glucose transmembrane transporter activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0004872 - receptor activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0051594 - detection of glucose [Evidence IGI,IMP] [PMID 8901598]; GO_process: GO:0015755 - fructose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IGI] [PMID 9564039]; GO_process: GO:0015761 - mannose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 18616605]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 10477308]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Snf3p 1568109..1569869 Sugiyamaella lignohabitans 30037137 AWJ20_496 CDS RAD16 NC_031672.1 1570273 1573017 D Nucleotide excision repair (NER) protein; binds damaged DNA during NER; binds DNA in an ATP-dependent manner (with Rad7p) during NER; required for NER of non-transcribed chromatin; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IDA] [PMID 16675952]; GO_component: GO:0000113 - nucleotide-excision repair factor 4 complex [Evidence IDA] [PMID 9497356]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 9497356]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9497356]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16675952]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000715 - nucleotide-excision repair, DNA damage recognition [Evidence IDA,IMP] [PMID 15177043]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16675952]; DNA repair protein RAD16 1570273..1573017 Sugiyamaella lignohabitans 30037148 AWJ20_497 CDS YCF1 NC_031672.1 1573213 1576380 R Vacuolar glutathione S-conjugate transporter; member of ATP-binding cassette family; ATPase activity required to support vacuole fusion; forms stable complexes with vacuole fusion machinery; regulates Vam7p recruitment to vacuoles; has role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin, selenodigluthatione, and oxidized glutathione; similar to human cystic fibrosis protein CFTR; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23658021]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8692889]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0015127 - bilirubin transmembrane transporter activity [Evidence IGI,IMP] [PMID 10790694]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 10220408]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12383937]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12755704]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 9217966]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015723 - bilirubin transport [Evidence IGI,IMP] [PMID 10790694]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046686 - response to cadmium ion [Evidence IEA]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 10220408]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 12755704]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 9217966]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 10790694]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 23658021]; ATP-binding cassette glutathione S-conjugate transporter YCF1 complement(1573213..1576380) Sugiyamaella lignohabitans 30037159 AWJ20_498 CDS STE4 NC_031672.1 1579947 1581038 D G protein beta subunit; forms a dimer with Ste18p to activate the mating signaling pathway, forms a heterotrimer with Gpa1p and Ste18p to dampen signaling; may recruit Rho1p to the polarized growth site during mating; contains WD40 repeats; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IMP] [PMID 2105453]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IDA] [PMID 8995254]; GO_component: GO:0005937 - mating projection [Evidence IDA] [PMID 11073983]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8995254]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IMP] [PMID 2107073]; GO_process: GO:0031684 - heterotrimeric G-protein complex cycle [Evidence IMP] [PMID 2107073]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 15192700]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IGI,IPI] [PMID 10087263]; GO_process: GO:0010525 - regulation of transposition, RNA-mediated [Evidence IMP] [PMID 9566871]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Ste4p 1579947..1581038 Sugiyamaella lignohabitans 30037170 AWJ20_499 CDS AVO1 NC_031672.1 1582228 1585509 R Component of a membrane-bound complex containing the Tor2p kinase; contains Tor2p kinase and other proteins; may have a role in regulation of cell growth; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 12408816]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19144819]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0017016 - Ras GTPase binding [Evidence ISS] [PMID 17303383]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IDA] [PMID 19144819]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP,IPI] [PMID 12408816]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IPI] [PMID 12408816]; GO_process: GO:0046580 - negative regulation of Ras protein signal transduction [Evidence ISS] [PMID 17303383]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 12408816]; Avo1p complement(1582228..1585509) Sugiyamaella lignohabitans 30037181 AWJ20_500 CDS AGP3 NC_031672.1 1586375 1587148 R Low-affinity amino acid permease; may act to supply the cell with amino acids as nitrogen source in nitrogen-poor conditions; transcription is induced under conditions of sulfur limitation; plays a role in regulating Ty1 transposition; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 14697254]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 14697254]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Agp3p complement(1586375..1587148) Sugiyamaella lignohabitans 30037194 AWJ20_501 CDS AGP3 NC_031672.1 1587373 1588071 R Low-affinity amino acid permease; may act to supply the cell with amino acids as nitrogen source in nitrogen-poor conditions; transcription is induced under conditions of sulfur limitation; plays a role in regulating Ty1 transposition; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 14697254]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 14697254]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Agp3p complement(1587373..1588071) Sugiyamaella lignohabitans 30037205 AWJ20_502 CDS ORM1 NC_031672.1 1591352 1591900 D Protein that mediates sphingolipid homeostasis; evolutionarily conserved, required for resistance to agents that induce unfolded protein response; Orm1p and Orm2p together control membrane biogenesis by coordinating lipid homeostasis with protein quality control; ORM1 has a paralog, ORM2, that arose from the whole genome duplication; GO_component: GO:0035339 - SPOTS complex [Evidence IDA] [PMID 20182505]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 20182505]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0090156 - cellular sphingolipid homeostasis [Evidence IMP] [PMID 20182505]; GO_process: GO:0090155 - negative regulation of sphingolipid biosynthetic process [Evidence IGI,IMP,IPI] [PMID 20182505]; GO_process: GO:0006986 - response to unfolded protein [Evidence IMP,ISS] [PMID 12093374]; Orm1p 1591352..1591900 Sugiyamaella lignohabitans 30037216 AWJ20_503 CDS TSR3 NC_031672.1 1592571 1593521 D Protein required for 20S pre-rRNA processing; involved in processing of the 20S pre-rRNA at site D to generate mature 18S rRNA; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IMP] [PMID 19806183]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Tsr3p 1592571..1593521 Sugiyamaella lignohabitans 30037227 AWJ20_504 CDS SRO7 NC_031672.1 1594490 1596877 R Effector of Rab GTPase Sec4p; forms a complex with Sec4p and t-SNARE Sec9p; involved in exocytosis and docking and fusion of post-Golgi vesicles with plasma membrane; homolog of Drosophila lgl tumor suppressor; SRO7 has a paralog, SRO77, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10402465]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10402465]; GO_function: GO:0017137 - Rab GTPase binding [Evidence IDA] [PMID 16390997]; GO_function: GO:0000149 - SNARE binding [Evidence IPI] [PMID 15964280]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IPI] [PMID 10402465]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IPI] [PMID 15964280]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 10402465]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IPI] [PMID 16390997]; Sro7p complement(1594490..1596877) Sugiyamaella lignohabitans 30037238 AWJ20_505 CDS DNL4 NC_031672.1 1597359 1598723 D DNA ligase required for nonhomologous end-joining (NHEJ); forms stable heterodimer with required cofactor Lif1p, interacts with Nej1p; involved in meiosis, not essential for vegetative growth; GO_component: GO:0032807 - DNA ligase IV complex [Evidence IPI] [PMID 17567543]; GO_component: GO:0000790 - nuclear chromatin [Evidence IPI] [PMID 10679327]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IEA,IEA]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IDA] [PMID 9242411]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IDA,IMP] [PMID 9271115]; GO_function: GO:0003909 - DNA ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006266 - DNA ligation [Evidence IBA]; GO_process: GO:0051103 - DNA ligation involved in DNA repair [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA] [PMID 15342630]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IMP] [PMID 9242411]; GO_process: GO:0001302 - replicative cell aging [Evidence IGI] [PMID 18627461]; DNA ligase (ATP) DNL4 1597359..1598723 Sugiyamaella lignohabitans 30037249 AWJ20_506 CDS DNL4 NC_031672.1 1599004 1600296 D DNA ligase required for nonhomologous end-joining (NHEJ); forms stable heterodimer with required cofactor Lif1p, interacts with Nej1p; involved in meiosis, not essential for vegetative growth; GO_component: GO:0032807 - DNA ligase IV complex [Evidence IPI] [PMID 17567543]; GO_component: GO:0000790 - nuclear chromatin [Evidence IPI] [PMID 10679327]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IEA,IEA]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IDA] [PMID 9242411]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IDA,IMP] [PMID 9271115]; GO_function: GO:0003909 - DNA ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006266 - DNA ligation [Evidence IBA]; GO_process: GO:0051103 - DNA ligation involved in DNA repair [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA] [PMID 15342630]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IMP] [PMID 9242411]; GO_process: GO:0001302 - replicative cell aging [Evidence IGI] [PMID 18627461]; DNA ligase (ATP) DNL4 1599004..1600296 Sugiyamaella lignohabitans 30037260 AWJ20_507 CDS SEA4 NC_031672.1 1600359 1602584 R Subunit of the SEA (Seh1-associated) complex; SEA is a coatomer-related complex that associates dynamically with the vacuole; has an N-terminal beta-propeller fold and a C-terminal RING motif; promoter contains multiple GCN4 binding sites; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0097042 - extrinsic component of fungal-type vacuolar membrane [Evidence IDA] [PMID 21454883]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Sea4p complement(1600359..1602584) Sugiyamaella lignohabitans 30037271 AWJ20_508 CDS AWJ20_508 NC_031672.1 1607474 1609489 D uncharacterized protein 1607474..1609489 Sugiyamaella lignohabitans 30037282 AWJ20_509 CDS VPS8 NC_031672.1 1609577 1612573 D CORVET complex membrane-binding subunit VPS8 1609577..1612573 Sugiyamaella lignohabitans 30037293 AWJ20_510 CDS AWJ20_510 NC_031672.1 1612861 1614036 R hypothetical protein; localizes to the cytoplasm and nucleus; overexpression affects protein trafficking through the endocytic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21777356]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21777356]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004121 - cystathionine beta-lyase activity [Evidence ISS] [PMID 10821189]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence ISS] [PMID 10821189]; putative cystathionine beta-lyase complement(1612861..1614036) Sugiyamaella lignohabitans 30037305 AWJ20_511 CDS MRT4 NC_031672.1 1614475 1615026 R Protein involved in mRNA turnover and ribosome assembly; required at post-transcriptional step for efficient retrotransposition; localizes to the nucleolus; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 19797078]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 19797079]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 19797079]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 19797079]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0070180 - large ribosomal subunit rRNA binding [Evidence ISA] [PMID 19346338]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 10471698]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IGI,IMP] [PMID 19797079]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Mrt4p complement(1614475..1615026) Sugiyamaella lignohabitans 30037316 AWJ20_512 CDS AWJ20_512 NC_031672.1 1615789 1616286 D uncharacterized protein 1615789..1616286 Sugiyamaella lignohabitans 30037327 AWJ20_513 CDS FUR1 NC_031672.1 1616754 1617155 R Uracil phosphoribosyltransferase; synthesizes UMP from uracil; involved in the pyrimidine salvage pathway; GO_component: GO:0005622 - intracellular [Evidence IC] [PMID 2189783]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]; GO_function: GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IDA] [PMID 2189783]; GO_process: GO:0044206 - UMP salvage [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008655 - pyrimidine-containing compound salvage [Evidence IDA] [PMID 2189783]; uracil phosphoribosyltransferase complement(1616754..1617155) Sugiyamaella lignohabitans 30037338 AWJ20_514 CDS NST1 NC_031672.1 1617998 1622395 R hypothetical protein; mediates sensitivity to salt stress; interacts physically with the splicing factor Msl1p and also displays genetic interaction with MSL1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009651 - response to salt stress [Evidence IMP] [PMID 11816027]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Nst1p complement(1617998..1622395) Sugiyamaella lignohabitans 30037349 AWJ20_515 CDS SGS1 NC_031672.1 1627969 1631133 R ATP-dependent DNA helicase SGS1 complement(1627969..1631133) Sugiyamaella lignohabitans 30037360 AWJ20_516 CDS ALD4 NC_031672.1 1635432 1637075 R Mitochondrial aldehyde dehydrogenase; required for growth on ethanol and conversion of acetaldehyde to acetate; phosphorylated; activity is K+ dependent; utilizes NADP+ or NAD+ equally as coenzymes; expression is glucose repressed; can substitute for cytosolic NADP-dependent aldehyde dehydrogenase when directed to the cytosol; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IMP] [PMID 9675847]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006740 - NADPH regeneration [Evidence IGI] [PMID 19158096]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IGI] [PMID 10919763]; GO_process: GO:0006067 - ethanol metabolic process [Evidence IMP] [PMID 9675847]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 10409655]; aldehyde dehydrogenase (NADP(+)) ALD4 complement(1635432..1637075) Sugiyamaella lignohabitans 30037371 AWJ20_517 CDS AWJ20_517 NC_031672.1 1638052 1638807 R uncharacterized protein complement(1638052..1638807) Sugiyamaella lignohabitans 30037382 AWJ20_518 CDS ILV2 NC_031672.1 1641288 1643141 R Acetolactate synthase; catalyses the first common step in isoleucine and valine biosynthesis and is the target of several classes of inhibitors, localizes to the mitochondria; expression of the gene is under general amino acid control; GO_component: GO:0005948 - acetolactate synthase complex [Evidence IDA] [PMID 10213630]; GO_component: GO:0005948 - acetolactate synthase complex [Evidence ISS] [PMID 2989783]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003984 - acetolactate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003984 - acetolactate synthase activity [Evidence IDA] [PMID 10213630]; GO_function: GO:0003984 - acetolactate synthase activity [Evidence ISS] [PMID 2989783]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IDA] [PMID 15709745]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IDA,IMP] [PMID 2406721]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]; acetolactate synthase catalytic subunit complement(1641288..1643141) Sugiyamaella lignohabitans 30037393 AWJ20_519 CDS AWJ20_519 NC_031672.1 1642528 1642827 D uncharacterized protein 1642528..1642827 Sugiyamaella lignohabitans 30037404 AWJ20_520 CDS PRP4 NC_031672.1 1652487 1654103 R Splicing factor; component of the U4/U6-U5 snRNP complex; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA,IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; GO_process: GO:0034247 - snoRNA splicing [Evidence IMP] [PMID 8202378]; Prp4p complement(1652487..1654103) Sugiyamaella lignohabitans 30037416 AWJ20_521 CDS HDA3 NC_031672.1 1655819 1658062 R Subunit of the HDA1 histone deacetylase complex; possibly tetrameric trichostatin A-sensitive class II histone deacetylase complex contains Hda1p homodimer and an Hda2p-Hda3p heterodimer; required for the activity of the complex; relocalizes to the cytosol in response to hypoxia; similar to Hda2p; GO_component: GO:0070823 - HDA1 complex [Evidence IEA]; GO_component: GO:0070823 - HDA1 complex [Evidence IDA,IPI] [PMID 11287668]; GO_component: GO:0070823 - HDA1 complex [Evidence IDA] [PMID 8663039]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 19573535]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16415367]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IEA]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IDA] [PMID 19573535]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 16415367]; GO_process: GO:0031047 - gene silencing by RNA [Evidence IMP] [PMID 18022365]; GO_process: GO:0010978 - gene silencing involved in chronological cell aging [Evidence IMP] [PMID 18022365]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA,IMP] [PMID 11287668]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA,IMP] [PMID 8663039]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11287668]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hda3p complement(1655819..1658062) Sugiyamaella lignohabitans 30037427 AWJ20_522 CDS AOS1 NC_031672.1 1658919 1659917 D Subunit of heterodimeric nuclear SUMO activating enzyme E1 with Uba2p; activates Smt3p (SUMO) before its conjugation to proteins (sumoylation), which may play a role in protein targeting; essential for viability; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0031510 - SUMO activating enzyme complex [Evidence IPI] [PMID 9312010]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0019948 - SUMO activating enzyme activity [Evidence IDA] [PMID 9312010]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016925 - protein sumoylation [Evidence IDA] [PMID 9312010]; E1 ubiquitin-activating protein AOS1 1658919..1659917 Sugiyamaella lignohabitans 30037438 AWJ20_523 CDS SEC23 NC_031672.1 1660167 1661954 R GTPase-activating protein, stimulates the GTPase activity of Sar1p; component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat, involved in ER to Golgi transport; substrate of Ubp3/Bre5 complex; ubiquitylated by Ub-ligase Rsp5p; proteasome-mediated degradation of Sec23p is regulated by Cdc48p; GO_component: GO:0030127 - COPII vesicle coat [Evidence IEA]; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 8004676]; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IDA] [PMID 8451644]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0003400 - regulation of COPII vesicle coating [Evidence IDA] [PMID 8451644]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GTPase-activating protein SEC23 complement(1660167..1661954) Sugiyamaella lignohabitans 30037449 AWJ20_524 CDS GEA2 NC_031672.1 1668738 1671815 D Arf family guanine nucleotide exchange factor GEA2 1668738..1671815 Sugiyamaella lignohabitans 30037460 AWJ20_525 CDS AWJ20_525 NC_031672.1 1672782 1673459 D uncharacterized protein 1672782..1673459 Sugiyamaella lignohabitans 30037471 AWJ20_526 CDS AWJ20_526 NC_031672.1 1680377 1683608 D uncharacterized protein join(1680377..1680432,1681436..1683608) Sugiyamaella lignohabitans 30037482 AWJ20_527 CDS RPS6A NC_031672.1 1684978 1685601 D Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S6, no bacterial homolog; RPS6A has a paralog, RPS6B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 6814480]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 16246728]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IBA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S6A 1684978..1685601 Sugiyamaella lignohabitans 30037493 AWJ20_528 CDS PEF1 NC_031672.1 1687964 1688881 D Penta-EF-hand protein; required for polar bud growth and cell wall abscission; binds calcium and zinc with different affinity; localizes to bud site in G1, bud neck in G2; binds to Sec31p and modulates COPII coat assembly; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 17640275]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22792405]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 17640275]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 17640275]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 17640275]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 17640275]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 17640275]; GO_process: GO:0003400 - regulation of COPII vesicle coating [Evidence IDA,IMP,IPI] [PMID 22792405]; Pef1p 1687964..1688881 Sugiyamaella lignohabitans 30037504 AWJ20_529 CDS AWJ20_529 NC_031672.1 1692627 1693673 R NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein complement(1692627..1693673) Sugiyamaella lignohabitans 30037515 AWJ20_530 CDS AWJ20_530 NC_031672.1 1695052 1695834 R uncharacterized protein complement(1695052..1695834) Sugiyamaella lignohabitans 30037526 AWJ20_531 CDS MBA1 NC_031672.1 1698515 1699027 D Membrane-associated mitochondrial ribosome receptor; forms a complex with Mdm38p that may facilitate recruitment of mRNA-specific translational activators to ribosomes; possible role in protein export from the matrix to inner membrane; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11381092]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 16601683]; GO_process: GO:0007007 - inner mitochondrial membrane organization [Evidence IDA] [PMID 11381092]; GO_process: GO:0097033 - mitochondrial respiratory chain complex III biogenesis [Evidence IGI,IMP] [PMID 20427570]; GO_process: GO:0097034 - mitochondrial respiratory chain complex IV biogenesis [Evidence IGI,IMP] [PMID 20427570]; GO_process: GO:0070131 - positive regulation of mitochondrial translation [Evidence IGI] [PMID 20427570]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP] [PMID 16601683]; Mba1p 1698515..1699027 Sugiyamaella lignohabitans 30037537 AWJ20_532 CDS CDC12 NC_031672.1 1700227 1701696 D Component of the septin ring that is required for cytokinesis; septins are GTP-binding proteins that assemble into rod-like hetero-oligomers that can associate with other rods to form filaments; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins between mother and daughter cells; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 3316985]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005937 - mating projection [Evidence IDA] [PMID 18552279]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_component: GO:0031105 - septin complex [Evidence IDA] [PMID 18550837]; GO_component: GO:0031105 - septin complex [Evidence IPI] [PMID 9813094]; GO_component: GO:0032160 - septin filament array [Evidence IDA] [PMID 15282341]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 14597621]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 14993234]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 9442111]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 18550837]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IMP] [PMID 10882120]; GO_process: GO:0045860 - positive regulation of protein kinase activity [Evidence IDA] [PMID 14527412]; GO_process: GO:0000921 - septin ring assembly [Evidence IDA] [PMID 12636916]; GO_process: GO:0000921 - septin ring assembly [Evidence IMP] [PMID 14993234]; septin CDC12 1700227..1701696 Sugiyamaella lignohabitans 30037548 AWJ20_533 CDS SOK2 NC_031672.1 1709731 1711155 D Nuclear protein that negatively regulates pseudohyphal differentiation; plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA) signal transduction pathway; relocalizes to the cytosol in response to hypoxia; SOK2 has a paralog, PHD1, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence ISS] [PMID 8524252]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 11046133]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 8524252]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sok2p 1709731..1711155 Sugiyamaella lignohabitans 30037559 AWJ20_534 CDS HIR3 NC_031672.1 1713513 1718273 R Subunit of the HIR complex; a nucleosome assembly complex involved in regulation of histone gene transcription; involved in position-dependent gene silencing and nucleosome reassembly; ortholog of human CABIN1 protein; GO_component: GO:0000417 - HIR complex [Evidence IDA,IPI] [PMID 16264190]; GO_component: GO:0000417 - HIR complex [Evidence IDA] [PMID 16303565]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9001207]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 16264190]; GO_function: GO:0031491 - nucleosome binding [Evidence IMP] [PMID 16264190]; GO_function: GO:0003714 - transcription corepressor activity [Evidence IMP] [PMID 9001207]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16264190]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16303565]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 1406694]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 16449659]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hir3p complement(1713513..1718273) Sugiyamaella lignohabitans 30037570 AWJ20_535 CDS AWJ20_535 NC_031672.1 1719924 1721315 D uncharacterized protein 1719924..1721315 Sugiyamaella lignohabitans 30037578 AWJ20_536 CDS PPX1 NC_031672.1 1721410 1721868 R Exopolyphosphatase; hydrolyzes inorganic polyphosphate (poly P) into Pi residues; located in the cytosol, plasma membrane, and mitochondrial matrix; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 7860598]; GO_component: GO:0005829 - cytosol [Evidence TAS] [PMID 12689631]; GO_component: GO:0005759 - mitochondrial matrix [Evidence TAS] [PMID 12689631]; GO_component: GO:0005886 - plasma membrane [Evidence TAS] [PMID 12689631]; GO_function: GO:0004309 - exopolyphosphatase activity [Evidence IEA]; GO_function: GO:0004309 - exopolyphosphatase activity [Evidence IDA] [PMID 17215253]; GO_function: GO:0004309 - exopolyphosphatase activity [Evidence IDA,IMP] [PMID 7860598]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016462 - pyrophosphatase activity [Evidence IEA]; GO_process: GO:0006798 - polyphosphate catabolic process [Evidence IMP] [PMID 7860598]; GO_process: GO:0006798 - polyphosphate catabolic process [Evidence IDA] [PMID 8157625]; Ppx1p complement(1721410..1721868) Sugiyamaella lignohabitans 30037579 AWJ20_537 CDS HOM6 NC_031672.1 1722983 1724122 D Homoserine dehydrogenase (L-homoserine:NADP oxidoreductase); dimeric enzyme that catalyzes the third step in the common pathway for methionine and threonine biosynthesis; enzyme has nucleotide-binding, dimerization and catalytic regions; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004412 - homoserine dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004412 - homoserine dehydrogenase activity [Evidence IDA] [PMID 11341915]; GO_function: GO:0004412 - homoserine dehydrogenase activity [Evidence ISS] [PMID 8500624]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0009090 - homoserine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IMP] [PMID 4380684]; homoserine dehydrogenase join(1722983..1723010,1723074..1724122) Sugiyamaella lignohabitans 30037580 AWJ20_538 CDS YPD1 NC_031672.1 1727382 1728041 D Phosphorelay intermediate protein; phosphorylated by the plasma membrane sensor Sln1p in response to osmotic stress and then in turn phosphorylates the response regulators Ssk1p in the cytosol and Skn7p in the nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14665464]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14665464]; GO_function: GO:0043424 - protein histidine kinase binding [Evidence IPI] [PMID 8808622]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IDA] [PMID 8808622]; GO_process: GO:0007234 - osmosensory signaling via phosphorelay pathway [Evidence IDA,IMP] [PMID 8808622]; GO_process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA,IEA]; Ypd1p 1727382..1728041 Sugiyamaella lignohabitans 30037581 AWJ20_539 CDS MGS1 NC_031672.1 1728237 1730078 R Protein with DNA-dependent ATPase and ssDNA annealing activities; involved in maintenance of genome; interacts functionally with DNA polymerase delta; homolog of human Werner helicase interacting protein (WHIP); forms nuclear foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 16251400]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0043142 - single-stranded DNA-dependent ATPase activity [Evidence IDA] [PMID 11459965]; GO_function: GO:0043142 - single-stranded DNA-dependent ATPase activity [Evidence IDA] [PMID 16251400]; GO_function: GO:0043130 - ubiquitin binding [Evidence ISS] [PMID 17550899]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0033567 - DNA replication, Okazaki fragment processing [Evidence IDA] [PMID 16251400]; GO_process: GO:0000733 - DNA strand renaturation [Evidence IDA] [PMID 11459965]; GO_process: GO:0006952 - defense response [Evidence IEA]; GO_process: GO:0006282 - regulation of DNA repair [Evidence IGI] [PMID 16809783]; ssDNA-dependent ATPase MGS1 complement(1728237..1730078) Sugiyamaella lignohabitans 30037582 AWJ20_540 CDS IML1 NC_031672.1 1731318 1735556 D GTPase-activating protein (GAP), subunit of SEA and Iml1p complexes; SEA (Seh1-associated) complex is a coatomer-related complex that associates dynamically with the vacuole; Iml1p complex (Iml1p-Npr2p-Npr3p) is required for non-nitrogen-starvation (NNS)-induced autophagy; localized to either pre-autophagosomal structures (PAS) or non-PAS structures during NNS-induced autophagy; GO_component: GO:1990130 - Iml1 complex [Evidence IDA] [PMID 21900499]; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0097042 - extrinsic component of fungal-type vacuolar membrane [Evidence IDA] [PMID 21454883]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IDA,IMP,IPI] [PMID 23716719]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:2000785 - regulation of autophagic vacuole assembly [Evidence IMP] [PMID 21900499]; GO_process: GO:0006810 - transport [Evidence IEA]; Iml1p 1731318..1735556 Sugiyamaella lignohabitans 30037584 AWJ20_541 CDS AWJ20_541 NC_031672.1 1738943 1740169 D hypothetical protein; weak sequence similarity to bis (5'-nucleotidyl)-tetraphosphatases; (GFP)-fusion protein localizes to the vacuole; null mutant is highly sensitive to azaserine and resistant to sodium-O-vandate; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence ISS] [PMID 10618406]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; putative serine/threonine-protein phosphatase 1738943..1740169 Sugiyamaella lignohabitans 30037585 AWJ20_542 CDS ELP3 NC_031672.1 1741108 1742769 R Subunit of Elongator complex; Elongator is required for modification of wobble nucleosides in tRNA; exhibits histone acetyltransferase activity that is directed to histones H3 and H4; disruption confers resistance to K. lactis zymotoxin; GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IDA] [PMID 11689709]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12139626]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12139626]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,ISS] [PMID 10445034]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11689709]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Elongator subunit ELP3 complement(1741108..1742769) Sugiyamaella lignohabitans 30037586 AWJ20_543 CDS AWJ20_543 NC_031672.1 1743554 1745607 R glycine zipper family protein complement(join(1743554..1744704,1745544..1745607)) Sugiyamaella lignohabitans 30037587 AWJ20_544 CDS SEC16 NC_031672.1 1743651 1748306 D COPII vesicle coat protein required for ER transport vesicle budding; essential factor in endoplasmic reticulum exit site (ERES) formation, as well as in COPII-mediated ER-to-Golgi traffic; bound to periphery of ER membranes and may act to stabilize initial COPII complexes; interacts with Sec23p, Sec24p and Sec31p; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IDA] [PMID 7593161]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0070971 - endoplasmic reticulum exit site [Evidence IDA] [PMID 22675024]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0043495 - protein anchor [Evidence IDA] [PMID 12235121]; GO_function: GO:0043495 - protein anchor [Evidence IDA] [PMID 7593161]; GO_process: GO:0048208 - COPII vesicle coating [Evidence IEA]; GO_process: GO:0048208 - COPII vesicle coating [Evidence IDA] [PMID 12235121]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0070973 - protein localization to endoplasmic reticulum exit site [Evidence IMP] [PMID 22675024]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sec16p 1743651..1748306 Sugiyamaella lignohabitans 30037588 AWJ20_545 CDS SEC16 NC_031672.1 1748456 1750846 D COPII vesicle coat protein required for ER transport vesicle budding; essential factor in endoplasmic reticulum exit site (ERES) formation, as well as in COPII-mediated ER-to-Golgi traffic; bound to periphery of ER membranes and may act to stabilize initial COPII complexes; interacts with Sec23p, Sec24p and Sec31p; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IDA] [PMID 7593161]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0070971 - endoplasmic reticulum exit site [Evidence IDA] [PMID 22675024]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0043495 - protein anchor [Evidence IDA] [PMID 12235121]; GO_function: GO:0043495 - protein anchor [Evidence IDA] [PMID 7593161]; GO_process: GO:0048208 - COPII vesicle coating [Evidence IEA]; GO_process: GO:0048208 - COPII vesicle coating [Evidence IDA] [PMID 12235121]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0070973 - protein localization to endoplasmic reticulum exit site [Evidence IMP] [PMID 22675024]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sec16p 1748456..1750846 Sugiyamaella lignohabitans 30037589 AWJ20_546 CDS AWJ20_546 NC_031672.1 1757997 1760285 D uncharacterized protein 1757997..1760285 Sugiyamaella lignohabitans 30037590 AWJ20_547 CDS RPC40 NC_031672.1 1760684 1761508 R RNA polymerase subunit AC40; common to RNA polymerase I and III; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase core subunit RPC40 complement(1760684..1761508) Sugiyamaella lignohabitans 30037591 AWJ20_548 CDS TXL1 NC_031672.1 1763064 1763807 D top hit is XP_003029647.1 originated in Schizophyllum commune H4-8; thioredoxin-like protein 1763064..1763807 Sugiyamaella lignohabitans 30037592 AWJ20_549 CDS TIF1 NC_031672.1 1764309 1765496 D Translation initiation factor eIF4A; DEA(D/H)-box RNA helicase that couples ATPase activity to RNA binding and unwinding; forms a dumbbell structure of two compact domains connected by a linker; interacts with eIF4G; protein abundance increases in response to DNA replication stress; TIF1 has a paralog, TIF2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence ISS] [PMID 2648398]; GO_component: GO:0016281 - eukaryotic translation initiation factor 4F complex [Evidence IGI] [PMID 10409745]; GO_component: GO:0016281 - eukaryotic translation initiation factor 4F complex [Evidence IGI,ISS] [PMID 2648398]; GO_component: GO:0005840 - ribosome [Evidence TAS] [PMID 9841679]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA,IMP] [PMID 1502180]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 24471916]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA,IMP] [PMID 1502180]; GO_function: GO:0003743 - translation initiation factor activity [Evidence ISS] [PMID 2648398]; GO_function: GO:0003743 - translation initiation factor activity [Evidence TAS] [PMID 9841679]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence ISS] [PMID 2648398]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IDA,IMP] [PMID 1502180]; translation initiation factor eIF4A 1764309..1765496 Sugiyamaella lignohabitans 30037593 AWJ20_550 CDS AWJ20_550 NC_031672.1 1764549 1765635 R uncharacterized protein complement(join(1764549..1765492,1765587..1765635)) Sugiyamaella lignohabitans 30037595 AWJ20_551 CDS APE4 NC_031672.1 1766219 1767682 D Cytoplasmic aspartyl aminopeptidase with possible vacuole function; Cvt pathway cargo protein; cleaves unblocked N-terminal acidic amino acids from peptide substrates; forms a 12-subunit homo-oligomer; M18 metalloprotease family; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 21343297]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_component: GO:0005775 - vacuolar lumen [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IDA] [PMID 16367759]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence ISS] [PMID 15606766]; GO_process: GO:0006508 - proteolysis [Evidence ISS] [PMID 8091229]; Ape4p 1766219..1767682 Sugiyamaella lignohabitans 30037596 AWJ20_552 CDS AWJ20_552 NC_031672.1 1767911 1768222 R uncharacterized protein complement(1767911..1768222) Sugiyamaella lignohabitans 30037597 AWJ20_553 CDS AWJ20_553 NC_031672.1 1769120 1770019 R uncharacterized protein complement(1769120..1770019) Sugiyamaella lignohabitans 30037598 AWJ20_554 CDS BNI1 NC_031672.1 1771012 1776051 R formin BNI1 complement(1771012..1776051) Sugiyamaella lignohabitans 30037599 AWJ20_555 CDS YEF1 NC_031672.1 1780880 1781902 R ATP-NADH kinase; phosphorylates both NAD and NADH; homooctameric structure consisting of 60-kDa subunits; similar to Pos5p; overexpression complements certain pos5 phenotypes; YEF1 has a paralog, UTR1, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003951 - NAD+ kinase activity [Evidence IEA]; GO_function: GO:0003951 - NAD+ kinase activity [Evidence IDA] [PMID 15978040]; GO_function: GO:0042736 - NADH kinase activity [Evidence IEA]; GO_function: GO:0042736 - NADH kinase activity [Evidence IDA] [PMID 15978040]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019674 - NAD metabolic process [Evidence IEA]; GO_process: GO:0006741 - NADP biosynthetic process [Evidence IEA]; GO_process: GO:0006741 - NADP biosynthetic process [Evidence IDA] [PMID 15978040]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Yef1p complement(1780880..1781902) Sugiyamaella lignohabitans 30037600 AWJ20_556 CDS LAS1 NC_031672.1 1788790 1790214 D Protein required for pre-rRNA processing at both ends of ITS2; functions with Grc3p in a conserved mechanism to modulate rRNA processing and ribosome biogenesis; may coordinate the action of the Rat1p-Rai1p exoRNAse; required for the G1/S cell cycle transition; human ortholog is Las1L; mutants require the SSD1-v allele for viability; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22083961]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 23175604]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22083961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8582632]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IPI] [PMID 23175604]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000448 - cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 23175604]; GO_process: GO:0000460 - maturation of 5.8S rRNA [Evidence IMP] [PMID 22083961]; GO_process: GO:0000470 - maturation of LSU-rRNA [Evidence IMP] [PMID 22083961]; Las1p 1788790..1790214 Sugiyamaella lignohabitans 30037601 AWJ20_557 CDS GAL3 NC_031672.1 1790437 1791981 R Transcriptional regulator; involved in activation of the GAL genes in response to galactose; forms a complex with Gal80p to relieve Gal80p inhibition of Gal4p; binds galactose and ATP but does not have galactokinase activity; GAL3 has a paralog, GAL1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10866670]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18952899]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18952899]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004335 - galactokinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 8628318]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA]; GO_process: GO:0006012 - galactose metabolic process [Evidence IEA,IEA]; GO_process: GO:0006012 - galactose metabolic process [Evidence IMP] [PMID 4577139]; GO_process: GO:0045185 - maintenance of protein location [Evidence IMP] [PMID 19651897]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000435 - positive regulation of transcription from RNA polymerase II promoter by galactose [Evidence IMP] [PMID 3013721]; transcriptional regulator GAL3 complement(1790437..1791981) Sugiyamaella lignohabitans 30037602 AWJ20_558 CDS LDB19 NC_031672.1 1792376 1793926 R alpha-arrestin involved in ubiquitin-dependent endocytosis; regulates endocytosis of plasma membrane proteins by recruiting the ubiquitin ligase Rsp5p to its target; involved in basal internalization and turnover of alpha-factor receptor Ste2p and recovery from pheromone induced G1 arrest; inhibited by Npr1p-mediated phosphorylation, which affects translocation between the cytosol and the plasma membrane; null mutant has reduced affinity for alcian blue dye; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 22118465]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22118465]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22118465]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IPI] [PMID 18976803]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0070086 - ubiquitin-dependent endocytosis [Evidence IMP,IPI] [PMID 18976803]; Ldb19p complement(1792376..1793926) Sugiyamaella lignohabitans 30037603 AWJ20_559 CDS MRPL10 NC_031672.1 1797749 1798618 D Mitochondrial ribosomal protein of the large subunit; appears as two protein spots (YmL10 and YmL18) on two-dimensional SDS gels; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL10/YmL18 1797749..1798618 Sugiyamaella lignohabitans 30037604 AWJ20_560 CDS CPR2 NC_031672.1 1798829 1800352 R Peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; has a potential role in the secretory pathway; CPR2 has a paralog, CPR5, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0042277 - peptide binding [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 1761234]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; peptidylprolyl isomerase CPR2 complement(1798829..1800352) Sugiyamaella lignohabitans 30037606 AWJ20_561 CDS AWJ20_561 NC_031672.1 1806273 1806701 R uncharacterized protein complement(1806273..1806701) Sugiyamaella lignohabitans 30037607 AWJ20_562 CDS NTO1 NC_031672.1 1807820 1810699 D Subunit of the NuA3 histone acetyltransferase complex; this complex acetylates histone H3; contains PHD finger domain that interacts with methylated histone H3; GO_component: GO:0033100 - NuA3 histone acetyltransferase complex [Evidence IDA] [PMID 17157260]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IPI] [PMID 17157260]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Nto1p 1807820..1810699 Sugiyamaella lignohabitans 30037608 AWJ20_563 CDS AWJ20_563 NC_031672.1 1812874 1814268 R Cell division control protein 45-like protein complement(1812874..1814268) Sugiyamaella lignohabitans 30037609 AWJ20_564 CDS PEX14 NC_031672.1 1815400 1816440 R Central component of the peroxisomal protein import machinery; peroxisomal membrane peroxin; interacts with both PTS1 (Pex5p) and PTS2 (Pex7p), peroxisomal matrix protein signal recognition factors and membrane receptor Pex13p; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA,IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 9094717]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 9312008]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 9094717]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 9312008]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IEA]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IMP,IPI] [PMID 16107331]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 9094717]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 9312008]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pex14p complement(1815400..1816440) Sugiyamaella lignohabitans 30037610 AWJ20_566 CDS TFC6 NC_031672.1 1817389 1819566 R transcription factor TFIIIC subunit TFC6 complement(1817389..1819566) Sugiyamaella lignohabitans 30037612 AWJ20_567 CDS UBA4 NC_031672.1 1820270 1821529 R E1-like protein that activates Urm1p before urmylation; also acts in thiolation of the wobble base of cytoplasmic tRNAs by adenylating and then thiolating Urm1p; receives sulfur from Tum1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0042292 - URM1 activating enzyme activity [Evidence IDA,ISS] [PMID 10713047]; GO_function: GO:0042292 - URM1 activating enzyme activity [Evidence IMP] [PMID 14555475]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0070733 - protein adenylyltransferase activity [Evidence IMP] [PMID 19145231]; GO_function: GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO_function: GO:0016783 - sulfurtransferase activity [Evidence IDA] [PMID 18491921]; GO_function: GO:0016783 - sulfurtransferase activity [Evidence IMP] [PMID 19145231]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IEA]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IDA] [PMID 19864628]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0007114 - cell budding [Evidence IGI] [PMID 14551258]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 14555475]; GO_process: GO:0018192 - enzyme active site formation via L-cysteine persulfide [Evidence IEA]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IGI,IMP] [PMID 14551258]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IDA] [PMID 10713047]; GO_process: GO:0032447 - protein urmylation [Evidence IMP] [PMID 14555475]; GO_process: GO:2000220 - regulation of pseudohyphal growth [Evidence IMP] [PMID 22043304]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0034227 - tRNA thio-modification [Evidence IEA]; GO_process: GO:0034227 - tRNA thio-modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IEA]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 18664566]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19145231]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19151091]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IEA]; Uba4p complement(1820270..1821529) Sugiyamaella lignohabitans 30037613 AWJ20_568 CDS AWJ20_568 NC_031672.1 1823238 1824650 D beta-1,6-glucanase Neg1 1823238..1824650 Sugiyamaella lignohabitans 30037614 AWJ20_569 CDS AWJ20_569 NC_031672.1 1826581 1827948 R uncharacterized protein complement(1826581..1827948) Sugiyamaella lignohabitans 30037615 AWJ20_570 CDS PRP21 NC_031672.1 1829659 1831263 D Subunit of the SF3a splicing factor complex; required for spliceosome assembly; GO_component: GO:0005686 - U2 snRNP [Evidence TAS] [PMID 11804584]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 8065365]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 8969185]; Prp21p 1829659..1831263 Sugiyamaella lignohabitans 30037617 AWJ20_571 CDS SGT2 NC_031672.1 1831947 1833077 R Glutamine-rich cytoplasmic cochaperone; serves as a scaffold bringing together Get4, Get5p, and other TRC complex members that are required to mediate posttranslational insertion of tail-anchored proteins into the ER membrane; interacts with the prion domain of Sup35p; amyloid sensor; plays a role in targeting chaperones to prion aggregates; has similarity to human cochaperone SGT; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 20850366]; GO_process: GO:0006620 - posttranslational protein targeting to membrane [Evidence IDA] [PMID 20850366]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 12482202]; Sgt2p complement(1831947..1833077) Sugiyamaella lignohabitans 30037618 AWJ20_572 CDS AWJ20_572 NC_031672.1 1833829 1834542 R uncharacterized protein complement(1833829..1834542) Sugiyamaella lignohabitans 30037619 AWJ20_573 CDS AWJ20_573 NC_031672.1 1835870 1838860 D uncharacterized protein 1835870..1838860 Sugiyamaella lignohabitans 30037620 AWJ20_574 CDS AWJ20_574 NC_031672.1 1838956 1840209 D uncharacterized protein 1838956..1840209 Sugiyamaella lignohabitans 30037621 AWJ20_575 CDS AWJ20_575 NC_031672.1 1840385 1841143 R uncharacterized protein complement(1840385..1841143) Sugiyamaella lignohabitans 30037622 AWJ20_576 CDS AWJ20_576 NC_031672.1 1842115 1842945 R uncharacterized protein complement(1842115..1842945) Sugiyamaella lignohabitans 30037623 AWJ20_577 CDS RRN3 NC_031672.1 1843590 1845671 R Protein required for transcription of rDNA by RNA polymerase I; transcription factor independent of DNA template; involved in recruitment of RNA polymerase I to rDNA; structure reveals unique HEAT repeat fold and a surface serine patch; phosphorylation of serine patch impairs cell growth and reduces RNA polymerase I binding in vitro and RNA polymerase I recruitment to the rDNA gene in vivo; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 19416370]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 23393135]; GO_function: GO:0001042 - RNA polymerase I core binding [Evidence IDA,IPI] [PMID 11032814]; GO_function: GO:0001179 - RNA polymerase I transcription factor binding [Evidence IDA,IPI] [PMID 11032814]; GO_function: GO:0001082 - RNA polymerase I transcription factor binding transcription factor activity [Evidence IDA,IGI,IPI] [PMID 11032814]; GO_function: GO:0001181 - core RNA polymerase I binding transcription factor activity [Evidence IDA,IGI,IPI] [PMID 11032814]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001180 - transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript [Evidence IMP] [PMID 8670901]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rrn3p complement(1843590..1845671) Sugiyamaella lignohabitans 30037624 AWJ20_578 CDS yip11 NC_031672.1 1847161 1848198 R SMN family protein Yip11 complement(1847161..1848198) Sugiyamaella lignohabitans 30037625 AWJ20_579 CDS AWJ20_579 NC_031672.1 1848868 1850061 D uncharacterized protein 1848868..1850061 Sugiyamaella lignohabitans 30037626 AWJ20_580 CDS AWJ20_580 NC_031672.1 1851571 1852786 R uncharacterized protein complement(join(1851571..1852541,1852732..1852786)) Sugiyamaella lignohabitans 30037628 AWJ20_581 CDS APM4 NC_031672.1 1855818 1860422 D Cargo-binding mu subunit of AP-2; AP-2 is a heterotetrameric endocytic cargo-binding adaptor that facilitates uptake of membrane proteins during clathrin-mediated endocytosis; Apm4p is required for AP-2 function and localization, and binds cell wall stress receptor Mid2p; AP-2 is required for cell polarity responses to pheromone, nutritional status and cell wall damage in S. cerevisiae, and for hyphal growth in C. albicans; AP-2 complex is conserved in mammals; GO_component: GO:0030122 - AP-2 adaptor complex [Evidence IPI] [PMID 10564262]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 24460703]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IC] [PMID 10564262]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Apm4p join(1855818..1856573,1858932..1860422) Sugiyamaella lignohabitans 30037629 AWJ20_582 CDS AWJ20_582 NC_031672.1 1861302 1862462 R uncharacterized protein complement(1861302..1862462) Sugiyamaella lignohabitans 30037630 AWJ20_583 CDS SFM1 NC_031672.1 1862866 1863294 D SPOUT methyltransferase; catalyzes omega-monomethylation of Rps3p on Arg-146; not an essential gene; predicted to be involved in rRNA processing and ribosome biogenesis and in biopolymer catabolism; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0035241 - protein-arginine omega-N monomethyltransferase activity [Evidence IDA] [PMID 22650761]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IMP] [PMID 22650761]; Sfm1p 1862866..1863294 Sugiyamaella lignohabitans 30037631 AWJ20_584 CDS AWJ20_584 NC_031672.1 1863730 1866396 R Putative acyltransferase with similarity to Eeb1p and Eht1p; has a minor role in medium-chain fatty acid ethyl ester biosynthesis; may be involved in lipid metabolism and detoxification; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence ISS] [PMID 16361250]; GO_process: GO:0051792 - medium-chain fatty acid biosynthetic process [Evidence IGI] [PMID 16361250]; putative carboxylic ester hydrolase complement(1863730..1866396) Sugiyamaella lignohabitans 30037632 AWJ20_585 CDS AWJ20_585 NC_031672.1 1869674 1872283 D uncharacterized protein 1869674..1872283 Sugiyamaella lignohabitans 30037633 AWJ20_586 CDS AWJ20_586 NC_031672.1 1873903 1876632 D uncharacterized protein 1873903..1876632 Sugiyamaella lignohabitans 30037634 AWJ20_587 CDS AWJ20_587 NC_031672.1 1876808 1877710 D uncharacterized protein 1876808..1877710 Sugiyamaella lignohabitans 30037635 AWJ20_588 CDS AWJ20_588 NC_031672.1 1878820 1879776 R NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein complement(1878820..1879776) Sugiyamaella lignohabitans 30037636 AWJ20_589 CDS AWJ20_589 NC_031672.1 1881267 1882013 R uncharacterized protein complement(1881267..1882013) Sugiyamaella lignohabitans 30037637 AWJ20_590 CDS AWJ20_590 NC_031672.1 1884606 1885838 D uncharacterized protein 1884606..1885838 Sugiyamaella lignohabitans 30037639 AWJ20_591 CDS AWJ20_591 NC_031672.1 1894019 1896628 R uncharacterized protein complement(1894019..1896628) Sugiyamaella lignohabitans 30037640 AWJ20_592 CDS AWJ20_592 NC_031672.1 1900245 1903091 R uncharacterized protein complement(1900245..1903091) Sugiyamaella lignohabitans 30037641 AWJ20_593 CDS AWJ20_593 NC_031672.1 1905734 1906330 R uncharacterized protein complement(1905734..1906330) Sugiyamaella lignohabitans 30037642 AWJ20_594 CDS AWJ20_594 NC_031672.1 1906668 1907312 R Mov34/MPN/PAD-1 family protein complement(1906668..1907312) Sugiyamaella lignohabitans 30037643 AWJ20_595 CDS AWJ20_595 NC_031672.1 1910172 1911719 D phosphatidylinositol-4-phosphate 5-kinase its3 1910172..1911719 Sugiyamaella lignohabitans 30037644 AWJ20_596 CDS AWJ20_596 NC_031672.1 1913093 1913791 R uncharacterized protein complement(1913093..1913791) Sugiyamaella lignohabitans 30037645 AWJ20_597 CDS EFT1 NC_031672.1 1915894 1918386 D similar to Aspergillus terreus NIH2624 XP_001208692.1; elongation factor 2 1915894..1918386 Sugiyamaella lignohabitans 30037646 AWJ20_598 CDS FDH1 NC_031672.1 1918881 1919087 R NAD(+)-dependent formate dehydrogenase; may protect cells from exogenous formate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11921099]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IGI,ISS] [PMID 11921099]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 21246355]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 11921099]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 19564482]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; formate dehydrogenase (NAD+) complement(1918881..1919087) Sugiyamaella lignohabitans 30037647 AWJ20_599 CDS FDH1 NC_031672.1 1919133 1920095 R NAD(+)-dependent formate dehydrogenase; may protect cells from exogenous formate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11921099]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IGI,ISS] [PMID 11921099]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 21246355]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 11921099]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 19564482]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; formate dehydrogenase (NAD+) complement(1919133..1920095) Sugiyamaella lignohabitans 30037648 AWJ20_600 CDS RGA1 NC_031672.1 1921083 1924895 R GTPase-activating protein for polarity-establishment protein Cdc42p; implicated in control of septin organization, pheromone response, and haploid invasive growth; relocalizes from bud neck to cytoplasm upon DNA replication stress; RGA1 has a paralog, RGA2, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0032177 - cellular bud neck split septin rings [Evidence IDA] [PMID 18166650]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 12455995]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 17981141]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 18166650]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IGI,IPI] [PMID 7498791]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 8657111]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IPI] [PMID 10066831]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence IPI] [PMID 10066831]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 18166650]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IPI] [PMID 10066831]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IGI] [PMID 7498791]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IPI] [PMID 10066831]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0031106 - septin ring organization [Evidence IGI] [PMID 14517318]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Rga1p complement(1921083..1924895) Sugiyamaella lignohabitans 30037651 AWJ20_601 CDS AWJ20_601 NC_031672.1 1930481 1932868 R uncharacterized protein complement(1930481..1932868) Sugiyamaella lignohabitans 30037652 AWJ20_602 CDS AWJ20_602 NC_031672.1 1934537 1937488 D uncharacterized protein 1934537..1937488 Sugiyamaella lignohabitans 30037653 AWJ20_603 CDS AWJ20_603 NC_031672.1 1939631 1942555 R uncharacterized protein complement(1939631..1942555) Sugiyamaella lignohabitans 30037654 AWJ20_604 CDS ARH1 NC_031672.1 1944828 1946222 R Oxidoreductase of the mitochondrial inner membrane; involved in cytoplasmic and mitochondrial iron homeostasis and required for activity of Fe-S cluster-containing enzymes; one of the few mitochondrial proteins essential for viability; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9727014]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015039 - NADPH-adrenodoxin reductase activity [Evidence IDA] [PMID 9727014]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 11035018]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 20534343]; Arh1p complement(1944828..1946222) Sugiyamaella lignohabitans 30037655 AWJ20_605 CDS pcf1 NC_031672.1 1948121 1951831 D CAF assembly factor (CAF-1) complex large subunit Pcf1 1948121..1951831 Sugiyamaella lignohabitans 30037656 AWJ20_606 CDS HXT11 NC_031672.1 1956560 1957654 D hexose transporter HXT11 1956560..1957654 Sugiyamaella lignohabitans 30037657 AWJ20_607 CDS AWJ20_607 NC_031672.1 1959365 1960546 D uncharacterized protein join(1959365..1959592,1960460..1960546) Sugiyamaella lignohabitans 30037658 AWJ20_608 CDS SET1 NC_031672.1 1961379 1965563 D histone methyltransferase SET1 1961379..1965563 Sugiyamaella lignohabitans 30037659 AWJ20_609 CDS MSH1 NC_031672.1 1966675 1969131 D DNA-binding protein of the mitochondria; involved in repair of mitochondrial DNA; has ATPase activity and binds to DNA mismatches; has homology to E. coli MutS; transcription is induced during meiosis; GO_component: GO:0032300 - mismatch repair complex [Evidence IBA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15611870]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 7961998]; GO_component: GO:0000228 - nuclear chromosome [Evidence IRD]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 7961999]; GO_function: GO:0003684 - damaged DNA binding [Evidence IBA]; GO_function: GO:0032139 - dinucleotide insertion or deletion binding [Evidence IDA] [PMID 7961998]; GO_function: GO:0032137 - guanine/thymine mispair binding [Evidence IDA] [PMID 7961998]; GO_function: GO:0000404 - heteroduplex DNA loop binding [Evidence IRD]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 1334021]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IRD]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IRD]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 15611870]; GO_process: GO:0043504 - mitochondrial DNA repair [Evidence IMP] [PMID 1334021]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 1334021]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 1334021]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 15611870]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 15590333]; mismatch repair ATPase MSH1 1966675..1969131 Sugiyamaella lignohabitans 30037660 AWJ20_610 CDS NAF1 NC_031672.1 1969227 1970924 R RNA-binding protein required for the assembly of box H/ACA snoRNPs; thus required for pre-rRNA processing; forms a complex with Shq1p and interacts with H/ACA snoRNP components Nhp2p and Cbf5p; similar to Gar1p; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 12242285]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 12515383]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12515383]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IPI] [PMID 12515383]; GO_process: GO:0000493 - box H/ACA snoRNP assembly [Evidence IMP,IPI] [PMID 12228251]; GO_process: GO:0000493 - box H/ACA snoRNP assembly [Evidence IMP] [PMID 12242285]; GO_process: GO:0000493 - box H/ACA snoRNP assembly [Evidence IMP,IPI] [PMID 12515383]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Naf1p complement(1969227..1970924) Sugiyamaella lignohabitans 30037662 AWJ20_611 CDS AWJ20_611 NC_031672.1 1973604 1974368 R uncharacterized protein complement(1973604..1974368) Sugiyamaella lignohabitans 30037663 AWJ20_612 CDS YPS3 NC_031672.1 1975351 1976805 D Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 1975351..1976805 Sugiyamaella lignohabitans 30037664 AWJ20_614 CDS AWJ20_614 NC_031672.1 1977448 1978797 R uncharacterized protein complement(1977448..1978797) Sugiyamaella lignohabitans 30037666 AWJ20_615 CDS AWJ20_615 NC_031672.1 1984741 1986804 R uncharacterized protein complement(1984741..1986804) Sugiyamaella lignohabitans 30037667 AWJ20_616 CDS AWJ20_616 NC_031672.1 1987623 1988636 D uncharacterized protein 1987623..1988636 Sugiyamaella lignohabitans 30037668 AWJ20_617 CDS MRS3 NC_031672.1 1989064 1990314 R Iron transporter, mediates Fe2+ transport across inner mito membrane; mitochondrial carrier family member; active under low-iron conditions; may transport other cations; MRS3 has a paralog, MRS4, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 1703236]; GO_function: GO:0005381 - iron ion transmembrane transporter activity [Evidence IMP] [PMID 12902335]; GO_process: GO:0008380 - RNA splicing [Evidence IGI] [PMID 2448588]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0048250 - mitochondrial iron ion transport [Evidence IDA] [PMID 12902335]; GO_process: GO:0006810 - transport [Evidence IEA]; Mrs3p complement(1989064..1990314) Sugiyamaella lignohabitans 30037669 AWJ20_618 CDS KRE33 NC_031672.1 1992331 1995444 R Protein required for biogenesis of the small ribosomal subunit; required for biogenesis of the small ribosomal subunit; heterozygous mutant shows haploinsufficiency in K1 killer toxin resistance; essential gene; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 12150911]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 19806183]; Kre33p complement(1992331..1995444) Sugiyamaella lignohabitans 30037670 AWJ20_619 CDS AWJ20_619 NC_031672.1 1996918 1997688 D uncharacterized protein 1996918..1997688 Sugiyamaella lignohabitans 30037671 AWJ20_620 CDS PGU1 NC_031672.1 1998912 2000132 D Endo-polygalacturonase; pectolytic enzyme that hydrolyzes the alpha-1,4-glycosidic bonds in the rhamnogalacturonan chains in pectins; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 10028181]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 11935221]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004650 - polygalacturonase activity [Evidence IEA,IEA]; GO_function: GO:0004650 - polygalacturonase activity [Evidence IDA] [PMID 10650215]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045490 - pectin catabolic process [Evidence IDA] [PMID 10028181]; GO_process: GO:0007124 - pseudohyphal growth [Evidence NAS] [PMID 11255250]; Pgu1p 1998912..2000132 Sugiyamaella lignohabitans 30037673 AWJ20_621 CDS SWT1 NC_031672.1 2000373 2001728 R RNA endoribonuclease involved in perinuclear mRNP quality control; involved in perinuclear mRNP quality control via the turnover of aberrant, unprocessed pre-mRNAs; interacts with subunits of THO/TREX, TREX-2, and RNA polymerase II; contains a PIN (PilT N terminus) domain; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19127978]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17030511]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19127978]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA,IMP] [PMID 19127978]; GO_process: GO:0071032 - nuclear mRNA surveillance of mRNP export [Evidence IMP] [PMID 19127978]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IGI,IMP,IPI] [PMID 17030511]; Swt1p complement(2000373..2001728) Sugiyamaella lignohabitans 30037674 AWJ20_622 CDS AWJ20_622 NC_031672.1 2002185 2004992 R uncharacterized protein complement(2002185..2004992) Sugiyamaella lignohabitans 30037675 AWJ20_623 CDS AWJ20_623 NC_031672.1 2007235 2007858 D uncharacterized protein 2007235..2007858 Sugiyamaella lignohabitans 30037676 AWJ20_624 CDS RAD4 NC_031672.1 2008079 2011042 R Protein that recognizes and binds damaged DNA (with Rad23p) during NER; subunit of Nuclear Excision Repair Factor 2 (NEF2); also involved, with Rad23p, in turnover of ubiquitylated proteins; NER stands for nucleotide excision repair; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19889839]; GO_component: GO:0000111 - nucleotide-excision repair factor 2 complex [Evidence IDA] [PMID 7768886]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19889839]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9813069]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9837874]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 18936173]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 19889839]; Rad4p complement(2008079..2011042) Sugiyamaella lignohabitans 30037677 AWJ20_625 CDS ROD1 NC_031672.1 2012986 2014929 R Alpha-arrestin family member; activation through a switch in its modification state relays glucose signaling to transporter endocytosis; contributes to desensitization of agonist-occupied Ste2p by Rsp5p-dependent internalization and to recovery from pheromone induced G1 arrest; interacts with ubiquitin ligase Rsp5p via its 2 PY motifs; protein abundance increases in response to DNA replication stress; ROD1 has a paralog, ROG3, that arose from the whole genome duplication; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8621680]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IPI] [PMID 18976803]; GO_process: GO:0042493 - response to drug [Evidence IMP] [PMID 12163175]; GO_process: GO:0070086 - ubiquitin-dependent endocytosis [Evidence ISA] [PMID 18976803]; Rod1p complement(2012986..2014929) Sugiyamaella lignohabitans 30037678 AWJ20_626 CDS ERC1 NC_031672.1 2021238 2023097 D Member of the multi-drug and toxin extrusion (MATE) family; the MATE family is part of the multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily; overproduction confers ethionine resistance and accumulation of S-adenosylmethionine; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015297 - antiporter activity [Evidence ISS] [PMID 12603313]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IMP] [PMID 18592490]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 12603313]; GO_process: GO:0006810 - transport [Evidence IEA]; Erc1p 2021238..2023097 Sugiyamaella lignohabitans 30037679 AWJ20_627 CDS PEX12 NC_031672.1 2023352 2024557 R C3HC4-type RING-finger peroxin and E3 ubiquitin ligase; required for peroxisome biogenesis and peroxisomal matrix protein import; forms translocation subcomplex with Pex2p and Pex10p; mutations in human homolog cause peroxisomal disorder; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IEA]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 11370741]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008022 - protein C-terminus binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12667447]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 19687296]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 22471590]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016558 - protein import into peroxisome matrix [Evidence IMP] [PMID 11370741]; GO_process: GO:0016558 - protein import into peroxisome matrix [Evidence IMP] [PMID 15536088]; GO_process: GO:0016558 - protein import into peroxisome matrix [Evidence IMP] [PMID 9090384]; GO_process: GO:0006625 - protein targeting to peroxisome [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; ubiquitin-protein ligase peroxin 12 complement(2023352..2024557) Sugiyamaella lignohabitans 30037680 AWJ20_628 CDS AWJ20_628 NC_031672.1 2025075 2026526 D uncharacterized protein 2025075..2026526 Sugiyamaella lignohabitans 30037681 AWJ20_629 CDS GAS4 NC_031672.1 2026600 2027628 R 1,3-beta-glucanosyltransferase; involved with Gas2p in spore wall assembly; has similarity to Gas1p; localizes to the cell wall; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence ISS] [PMID 10769178]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 17397106]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IGI,IMP] [PMID 17189486]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; Gas4p complement(2026600..2027628) Sugiyamaella lignohabitans 30037682 AWJ20_630 CDS SPS19 NC_031672.1 2028631 2029407 R Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p complement(2028631..2029407) Sugiyamaella lignohabitans 30037684 AWJ20_631 CDS XYL2 NC_031672.1 2029751 2030872 D Xylitol dehydrogenase; converts xylitol to D-xylulose; expression induced by xylose, even though this pentose sugar is not well utilized by S. cerevisiae; null mutant has cell wall defect; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0046526 - D-xylulose reductase activity [Evidence IEA]; GO_function: GO:0046526 - D-xylulose reductase activity [Evidence IDA] [PMID 10486580]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO_process: GO:0019569 - L-arabinose catabolic process to xylulose 5-phosphate [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0005999 - xylulose biosynthetic process [Evidence IDA,IEP] [PMID 10486580]; D-xylulose reductase XYL2 2029751..2030872 Sugiyamaella lignohabitans 30037685 AWJ20_632 CDS AWJ20_632 NC_031672.1 2031763 2033307 R phosphatidylinositol-4-phosphate 5-kinase its3 complement(2031763..2033307) Sugiyamaella lignohabitans 30037686 AWJ20_633 CDS RBG1 NC_031672.1 2034422 2035489 R GTP-binding protein RBG1 complement(2034422..2035489) Sugiyamaella lignohabitans 30037687 AWJ20_634 CDS FUN12 NC_031672.1 2036645 2039749 D Translation initiation factor eIF5B; GTPase that promotes Met-tRNAiMet binding to ribosomes and ribosomal subunit joining; promotes GTP-dependent maturation of 18S rRNA by Nob1p; protein abundance increases in response to DNA replication stress; homolog of bacterial IF2; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 9624054]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IDA] [PMID 17242201]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 21335519]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IMP,ISS] [PMID 12471154]; GO_function: GO:0003924 - GTPase activity [Evidence IDA,IMP] [PMID 19029250]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 10982835]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 21335519]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 12008673]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 9624054]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA] [PMID 10982835]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0001732 - formation of translation initiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0001732 - formation of translation initiation complex [Evidence IMP] [PMID 17242201]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 22751017]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 12507428]; GO_process: GO:0042255 - ribosome assembly [Evidence IMP] [PMID 22770215]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; translation initiation factor eIF5B 2036645..2039749 Sugiyamaella lignohabitans 30037688 AWJ20_635 CDS AWJ20_635 NC_031672.1 2038825 2039091 R uncharacterized protein complement(2038825..2039091) Sugiyamaella lignohabitans 30037689 AWJ20_636 CDS IDI1 NC_031672.1 2040602 2041189 R Isopentenyl diphosphate:dimethylallyl diphosphate isomerase; catalyzes an essential activation step in the isoprenoid biosynthetic pathway; required for viability; isopentenyl diphosphate:dimethylallyl diphosphate isomerase is also known as IPP isomerase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IDA] [PMID 2681212]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0050992 - dimethylallyl diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0045337 - farnesyl diphosphate biosynthetic process [Evidence IDA] [PMID 7858969]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; isopentenyl-diphosphate delta-isomerase IDI1 complement(2040602..2041189) Sugiyamaella lignohabitans 30037690 AWJ20_637 CDS AWJ20_637 NC_031672.1 2041844 2045182 R uncharacterized protein complement(2041844..2045182) Sugiyamaella lignohabitans 30037691 AWJ20_639 CDS DPB2 NC_031672.1 2047056 2049074 D Second largest subunit of DNA polymerase II (DNA polymerase epsilon); required for maintenance of fidelity of chromosomal replication; essential motif in C-terminus is required for formation of the four-subunit Pol epsilon; expression peaks at the G1/S phase boundary; Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15282802]; GO_component: GO:0008622 - epsilon DNA polymerase complex [Evidence IDA] [PMID 12571237]; GO_component: GO:0008622 - epsilon DNA polymerase complex [Evidence IDA] [PMID 14673157]; GO_component: GO:0008622 - epsilon DNA polymerase complex [Evidence IDA] [PMID 2406268]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 12882968]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 16369485]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 14622139]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 16916794]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 14622139]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IDA] [PMID 12882968]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IDA] [PMID 14622139]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IDA] [PMID 16369485]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA,IMP] [PMID 19776424]; GO_process: GO:0070868 - heterochromatin organization involved in chromatin silencing [Evidence IC] [PMID 14673157]; GO_process: GO:0045005 - maintenance of fidelity involved in DNA-dependent DNA replication [Evidence IMP] [PMID 18245343]; GO_process: GO:0045005 - maintenance of fidelity involved in DNA-dependent DNA replication [Evidence IMP] [PMID 19463834]; Dpb2p 2047056..2049074 Sugiyamaella lignohabitans 30037693 AWJ20_640 CDS BET2 NC_031672.1 2049292 2049954 R Beta subunit of Type II geranylgeranyltransferase; required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p; GO_component: GO:0005968 - Rab-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 8183917]; GO_component: GO:0005968 - Rab-protein geranylgeranyltransferase complex [Evidence IPI] [PMID 8232542]; GO_component: GO:0005968 - Rab-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 8583924]; GO_component: GO:0005968 - Rab-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 8756702]; GO_function: GO:0004663 - Rab geranylgeranyltransferase activity [Evidence IEA]; GO_function: GO:0004663 - Rab geranylgeranyltransferase activity [Evidence IDA] [PMID 8756702]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 3312234]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8232541]; GO_process: GO:0018344 - protein geranylgeranylation [Evidence IDA] [PMID 8756702]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 1903184]; Bet2p complement(2049292..2049954) Sugiyamaella lignohabitans 30037695 AWJ20_641 CDS SNF12 NC_031672.1 2050695 2051498 R 73 kDa subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; relocates to the cytosol under hypoxic conditions; deletion mutants are temperature-sensitive; SNF12 has a paralog, RSC6, that arose from the whole genome duplication; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 8804308]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8816487]; GO_process: GO:0061412 - positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation [Evidence IMP] [PMID 10549298]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Snf12p complement(2050695..2051498) Sugiyamaella lignohabitans 30037696 AWJ20_642 CDS SNF12 NC_031672.1 2051677 2052225 R 73 kDa subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; relocates to the cytosol under hypoxic conditions; deletion mutants are temperature-sensitive; SNF12 has a paralog, RSC6, that arose from the whole genome duplication; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 8804308]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8816487]; GO_process: GO:0061412 - positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation [Evidence IMP] [PMID 10549298]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Snf12p complement(2051677..2052225) Sugiyamaella lignohabitans 30037697 AWJ20_643 CDS MCM5 NC_031672.1 2052551 2054752 R Component of the Mcm2-7 hexameric helicase complex; MCM complex is important for priming origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation when activated by Cdc7p-Dbf4p in S-phase; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IPI] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 2279699]; GO_component: GO:0000784 - nuclear chromosome, telomeric region [Evidence IDA] [PMID 19005221]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 2279699]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10075735]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9159120]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IMP] [PMID 17895243]; GO_function: GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 2279699]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 16980387]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:0006343 - establishment of chromatin silencing [Evidence IMP] [PMID 12750362]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 19005221]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 2044962]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IPI] [PMID 9335335]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 9990508]; MCM DNA helicase complex subunit MCM5 complement(2052551..2054752) Sugiyamaella lignohabitans 30037698 AWJ20_644 CDS AWJ20_644 NC_031672.1 2055488 2057122 D uncharacterized protein 2055488..2057122 Sugiyamaella lignohabitans 30037699 AWJ20_645 CDS AWJ20_645 NC_031672.1 2057528 2059534 R uncharacterized protein complement(2057528..2059534) Sugiyamaella lignohabitans 30037700 AWJ20_647 CDS TGL3 NC_031672.1 2066221 2067747 D Bifunctional triacylglycerol lipase and LPE acyltransferase; major lipid particle-localized triacylglycerol (TAG) lipase; catalyzes acylation of lysophosphatidylethanolamine (LPE), a function which is essential for sporulation; protein level and stability of Tgl3p are markedly reduced in the absence of lipid droplets; required with Tgl4p for timely bud formation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 16267052]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24390141]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0071618 - lysophosphatidylethanolamine acyltransferase activity [Evidence IDA] [PMID 20016004]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IMP] [PMID 12682047]; GO_process: GO:0007114 - cell budding [Evidence IGI,IMP] [PMID 19150427]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IMP] [PMID 10515935]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI,IMP] [PMID 16267052]; Tgl3p 2066221..2067747 Sugiyamaella lignohabitans 30037702 AWJ20_648 CDS ELP6 NC_031672.1 2067945 2068733 R Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex; which is required for modification of wobble nucleosides in tRNA; required for Elongator structural integrity; GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IDA] [PMID 11689709]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 22343726]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 22343726]; GO_process: GO:0032447 - protein urmylation [Evidence IMP] [PMID 14551258]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11689709]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Elongator subunit ELP6 complement(2067945..2068733) Sugiyamaella lignohabitans 30037703 AWJ20_649 CDS ZUO1 NC_031672.1 2069315 2070607 D Ribosome-associated chaperone; functions in ribosome biogenesis and, in partnership with Ssz1p and SSb1/2, as a chaperone for nascent polypeptide chains; contains a DnaJ domain and functions as a J-protein partner for Ssb1p and Ssb2p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 20368619]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IMP] [PMID 20368619]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 16413483]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 17242366]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence NAS] [PMID 9707440]; GO_process: GO:0006457 - protein folding [Evidence NAS] [PMID 9707440]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 20368619]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IMP] [PMID 15456889]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IMP] [PMID 20368619]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 16607023]; zuotin 2069315..2070607 Sugiyamaella lignohabitans 30037704 AWJ20_650 CDS YND1 NC_031672.1 2073339 2075477 D Apyrase with wide substrate specificity; helps prevent inhibition of glycosylation by hydrolyzing nucleoside tri- and diphosphates that inhibit glycotransferases; partially redundant with Gda1p; mediates adenovirus E4orf4-induced toxicity; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 10551827]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 10409709]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0017110 - nucleoside-diphosphatase activity [Evidence IDA] [PMID 10409709]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IDA] [PMID 10409709]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 10409709]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; Ynd1p 2073339..2075477 Sugiyamaella lignohabitans 30037706 AWJ20_651 CDS BSD2 NC_031672.1 2077590 2078980 R Heavy metal ion homeostasis protein; facilitates trafficking of Smf1p and Smf2p metal transporters to the vacuole where they are degraded, controls metal ion transport, prevents metal hyperaccumulation, functions in copper detoxification; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9115231]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14988731]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 14988731]; GO_process: GO:0030001 - metal ion transport [Evidence IMP] [PMID 9115231]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 14988731]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 9988727]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16456538]; Bsd2p complement(join(2077590..2078777,2078957..2078980)) Sugiyamaella lignohabitans 30037707 AWJ20_652 CDS HOL1 NC_031672.1 2080467 2082809 D Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p 2080467..2082809 Sugiyamaella lignohabitans 30037708 AWJ20_653 CDS BNA2 NC_031672.1 2083806 2085335 D Putative tryptophan 2,3-dioxygenase or indoleamine 2,3-dioxygenase; required for de novo biosynthesis of NAD from tryptophan via kynurenine; interacts genetically with telomere capping gene CDC13; regulated by Hst1p and Aftp; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0033754 - indoleamine 2,3-dioxygenase activity [Evidence IEA]; GO_function: GO:0033754 - indoleamine 2,3-dioxygenase activity [Evidence IDA] [PMID 21170645]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IGI] [PMID 12062417]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IC] [PMID 21170645]; dioxygenase BNA2 2083806..2085335 Sugiyamaella lignohabitans 30037709 AWJ20_654 CDS AWJ20_654 NC_031672.1 2086837 2088876 R uncharacterized protein complement(2086837..2088876) Sugiyamaella lignohabitans 30037710 AWJ20_655 CDS AWJ20_655 NC_031672.1 2093023 2093823 D uncharacterized protein 2093023..2093823 Sugiyamaella lignohabitans 30037711 AWJ20_656 CDS AWJ20_656 NC_031672.1 2094120 2094557 D uncharacterized protein 2094120..2094557 Sugiyamaella lignohabitans 30037712 AWJ20_657 CDS MAE1 NC_031672.1 2095817 2096539 D Mitochondrial malic enzyme; catalyzes the oxidative decarboxylation of malate to pyruvate, which is a key intermediate in sugar metabolism and a precursor for synthesis of several amino acids; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9603875]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0004471 - malate dehydrogenase (decarboxylating) (NAD+) activity [Evidence IEA,IEA]; GO_function: GO:0004470 - malic enzyme activity [Evidence IEA]; GO_function: GO:0004470 - malic enzyme activity [Evidence IDA,ISS] [PMID 9603875]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008948 - oxaloacetate decarboxylase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IMP] [PMID 9603875]; GO_process: GO:0006108 - malate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 9603875]; malate dehydrogenase (oxaloacetate-decarboxylating) 2095817..2096539 Sugiyamaella lignohabitans 30037713 AWJ20_658 CDS MAE1 NC_031672.1 2096581 2097129 D Mitochondrial malic enzyme; catalyzes the oxidative decarboxylation of malate to pyruvate, which is a key intermediate in sugar metabolism and a precursor for synthesis of several amino acids; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9603875]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0004471 - malate dehydrogenase (decarboxylating) (NAD+) activity [Evidence IEA,IEA]; GO_function: GO:0004470 - malic enzyme activity [Evidence IEA]; GO_function: GO:0004470 - malic enzyme activity [Evidence IDA,ISS] [PMID 9603875]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008948 - oxaloacetate decarboxylase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IMP] [PMID 9603875]; GO_process: GO:0006108 - malate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 9603875]; malate dehydrogenase (oxaloacetate-decarboxylating) 2096581..2097129 Sugiyamaella lignohabitans 30037714 AWJ20_659 CDS MAE1 NC_031672.1 2097197 2097502 D Mitochondrial malic enzyme; catalyzes the oxidative decarboxylation of malate to pyruvate, which is a key intermediate in sugar metabolism and a precursor for synthesis of several amino acids; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9603875]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0004471 - malate dehydrogenase (decarboxylating) (NAD+) activity [Evidence IEA,IEA]; GO_function: GO:0004470 - malic enzyme activity [Evidence IEA]; GO_function: GO:0004470 - malic enzyme activity [Evidence IDA,ISS] [PMID 9603875]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008948 - oxaloacetate decarboxylase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IMP] [PMID 9603875]; GO_process: GO:0006108 - malate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 9603875]; malate dehydrogenase (oxaloacetate-decarboxylating) 2097197..2097502 Sugiyamaella lignohabitans 30037715 AWJ20_660 CDS TTI1 NC_031672.1 2097582 2100494 R Subunit of the ASTRA complex, involved in chromatin remodeling; telomere length regulator involved in the stability or biogenesis of PIKKs such as TORC1; similar to S. pombe Tti1p; detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0070209 - ASTRA complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; Tti1p complement(2097582..2100494) Sugiyamaella lignohabitans 30037717 AWJ20_661 CDS TOA1 NC_031672.1 2101399 2102076 R TFIIA large subunit; involved in transcriptional activation, acts as antirepressor or as coactivator; required, along with Toa2p, for ribosomal protein gene transcription in vivo; homologous to largest and second largest subunits of human and Drosophila TFIIA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005672 - transcription factor TFIIA complex [Evidence IEA]; GO_component: GO:0005672 - transcription factor TFIIA complex [Evidence IDA] [PMID 7862117]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA] [PMID 7604282]; GO_function: GO:0001129 - TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly [Evidence IDA,IGI] [PMID 10567590]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA,IGI] [PMID 10567590]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 7862117]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Toa1p complement(2101399..2102076) Sugiyamaella lignohabitans 30037718 AWJ20_662 CDS FET3 NC_031672.1 2105069 2106928 R ferroxidase FET3 complement(2105069..2106928) Sugiyamaella lignohabitans 30037719 AWJ20_663 CDS AWJ20_663 NC_031672.1 2106047 2106943 D uncharacterized protein 2106047..2106943 Sugiyamaella lignohabitans 30037720 AWJ20_664 CDS FTR1 NC_031672.1 2111550 2112638 D High affinity iron permease; involved in the transport of iron across the plasma membrane; forms complex with Fet3p; expression is regulated by iron; protein abundance increases in response to DNA replication stress; GO_component: GO:0033573 - high affinity iron permease complex [Evidence IDA] [PMID 16522632]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10748025]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16700543]; GO_function: GO:0005381 - iron ion transmembrane transporter activity [Evidence IDA] [PMID 16700543]; GO_function: GO:0005381 - iron ion transmembrane transporter activity [Evidence IDA] [PMID 8599111]; GO_process: GO:1901684 - arsenate ion transmembrane transport [Evidence IGI] [PMID 23295455]; GO_process: GO:0006827 - high-affinity iron ion transport [Evidence IMP] [PMID 16700543]; GO_process: GO:0006827 - high-affinity iron ion transport [Evidence IGI,IMP] [PMID 8599111]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0033215 - iron assimilation by reduction and transport [Evidence IMP] [PMID 16700543]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; high-affinity iron permease FTR1 2111550..2112638 Sugiyamaella lignohabitans 30037721 AWJ20_665 CDS AWJ20_665 NC_031672.1 2112897 2114027 R uncharacterized protein complement(2112897..2114027) Sugiyamaella lignohabitans 30037722 AWJ20_666 CDS AWJ20_666 NC_031672.1 2115684 2116730 R uncharacterized protein complement(2115684..2116730) Sugiyamaella lignohabitans 30037723 AWJ20_667 CDS RGR1 NC_031672.1 2116762 2118680 R Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; required for glucose repression, HO repression, RME1 repression and sporulation; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001103 - RNA polymerase II repressing transcription factor binding [Evidence IPI] [PMID 11470794]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16452140]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16452140]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rgr1p complement(join(2116762..2116795,2116855..2118680)) Sugiyamaella lignohabitans 30037724 AWJ20_668 CDS AWJ20_668 NC_031672.1 2120856 2122955 D uncharacterized protein 2120856..2122955 Sugiyamaella lignohabitans 30037725 AWJ20_669 CDS PRR1 NC_031672.1 2123346 2123882 D serine/threonine protein kinase PRR1 2123346..2123882 Sugiyamaella lignohabitans 30037726 AWJ20_670 CDS YTH1 NC_031672.1 2124291 2124662 R Essential RNA-binding component of cleavage and polyadenylation factor; contains five zinc fingers; required for pre-mRNA 3'-end processing and polyadenylation; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9224719]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IMP] [PMID 10899131]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA,TAS] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IMP] [PMID 10899131]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA,TAS] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Yth1p complement(2124291..2124662) Sugiyamaella lignohabitans 30037728 AWJ20_671 CDS AWJ20_671 NC_031672.1 2133101 2134204 R uncharacterized protein complement(2133101..2134204) Sugiyamaella lignohabitans 30037729 AWJ20_672 CDS GZF3 NC_031672.1 2136087 2137976 D GATA zinc finger protein; negatively regulates nitrogen catabolic gene expression by competing with Gat1p for GATA site binding; function requires a repressive carbon source; dimerizes with Dal80p and binds to Tor1p; GZF3 has a paralog, DAL80, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19380492]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 9171383]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA,IMP] [PMID 19380492]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0051457 - maintenance of protein location in nucleus [Evidence IPI] [PMID 19380492]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9171383]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IGI] [PMID 9106207]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IMP] [PMID 9171383]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IGI,IMP] [PMID 9171427]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Gzf3p 2136087..2137976 Sugiyamaella lignohabitans 30037730 AWJ20_673 CDS AWJ20_673 NC_031672.1 2138376 2139812 R uncharacterized protein complement(2138376..2139812) Sugiyamaella lignohabitans 30037731 AWJ20_674 CDS COG4 NC_031672.1 2140239 2142908 R Essential component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IPI] [PMID 11703943]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20065092]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 11703943]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20065092]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20065092]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000301 - retrograde transport, vesicle recycling within Golgi [Evidence IMP] [PMID 11703943]; GO_process: GO:0006810 - transport [Evidence IEA]; Cog4p complement(2140239..2142908) Sugiyamaella lignohabitans 30037732 AWJ20_675 CDS ADE8 NC_031672.1 2143270 2143923 D Phosphoribosyl-glycinamide transformylase; catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016742 - hydroxymethyl-, formyl- and related transferase activity [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0004644 - phosphoribosylglycinamide formyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004644 - phosphoribosylglycinamide formyltransferase activity [Evidence IGI,IMP] [PMID 4581491]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IMP] [PMID 4581491]; GO_process: GO:0046084 - adenine biosynthetic process [Evidence IMP] [PMID 17247984]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 4581491]; phosphoribosylglycinamide formyltransferase 2143270..2143923 Sugiyamaella lignohabitans 30037733 AWJ20_676 CDS PUP1 NC_031672.1 2144192 2144986 R Beta 2 subunit of the 20S proteasome; endopeptidase with trypsin-like activity that cleaves after basic residues; synthesized as a proprotein before being proteolytically processed for assembly into 20S particle; human homolog is subunit Z; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18504300]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 9207060]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 9312134]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 2 complement(2144192..2144986) Sugiyamaella lignohabitans 30037734 AWJ20_677 CDS IKI3 NC_031672.1 2147693 2152083 R Subunit of Elongator complex; Elongator is required for modification of wobble nucleosides in tRNA; maintains structural integrity of Elongator; homolog of human IKAP, mutations in which cause familial dysautonomia (FD); GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IDA] [PMID 11689709]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12139626]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12139626]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 24750273]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11689709]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Elongator subunit IKI3 complement(join(2147693..2151715,2151940..2152083)) Sugiyamaella lignohabitans 30037735 AWJ20_678 CDS RIX7 NC_031672.1 2153777 2156476 R Putative ATPase of the AAA family; required for export of pre-ribosomal large subunits from the nucleus; distributed between the nucleolus, nucleoplasm, and nuclear periphery depending on growth conditions; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11447111]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11447111]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 18559667]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 11447111]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IGI,IMP] [PMID 18559667]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11447111]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; putative AAA family ATPase RIX7 complement(2153777..2156476) Sugiyamaella lignohabitans 30037736 AWJ20_679 CDS VPS20 NC_031672.1 2157084 2157701 D Myristoylated subunit of the ESCRT-III complex; the endosomal sorting complex required for transport of transmembrane proteins into the multivesicular body pathway to the lysosomal/vacuolar lumen; cytoplasmic protein recruited to endosomal membranes; GO_component: GO:0000815 - ESCRT III complex [Evidence IDA] [PMID 12194857]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12194857]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 15086794]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IMP] [PMID 19234443]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IGI] [PMID 23444383]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 12953057]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-III subunit protein VPS20 2157084..2157701 Sugiyamaella lignohabitans 30037737 AWJ20_680 CDS HEM2 NC_031672.1 2157926 2158828 R Aminolevulinate dehydratase; a homo-octameric enzyme, catalyzes the conversion of 5-aminolevulinate to porphobilinogen, the second step in heme biosynthesis; enzymatic activity is zinc-dependent; localizes to the cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004655 - porphobilinogen synthase activity [Evidence IEA,IEA]; GO_function: GO:0004655 - porphobilinogen synthase activity [Evidence IDA] [PMID 2204246]; GO_function: GO:0004655 - porphobilinogen synthase activity [Evidence IMP] [PMID 2445751]; GO_function: GO:0004655 - porphobilinogen synthase activity [Evidence IMP] [PMID 323256]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 14559249]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 323256]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; GO_process: GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]; porphobilinogen synthase HEM2 complement(2157926..2158828) Sugiyamaella lignohabitans 30037739 AWJ20_681 CDS LSC2 NC_031672.1 2163985 2165289 D Beta subunit of succinyl-CoA ligase; succinyl-CoA ligase is a mitochondrial enzyme of the TCA cycle that catalyzes the nucleotide-dependent conversion of succinyl-CoA to succinate; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9874242]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IDA,IMP,ISS] [PMID 9874242]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence IDA] [PMID 9874242]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; succinate--CoA ligase (GDP-forming) subunit beta 2163985..2165289 Sugiyamaella lignohabitans 30037740 AWJ20_682 CDS AWJ20_682 NC_031672.1 2166069 2166404 D uncharacterized protein 2166069..2166404 Sugiyamaella lignohabitans 30037741 AWJ20_683 CDS GRC3 NC_031672.1 2168171 2170354 D Polynucleotide kinase present on rDNA; required for efficient transcription termination by RNA polymerase I; functions with Las1p in a conserved mechanism to modulate rRNA processing and ribosome biogenesis; required for cell growth; mRNA is cell-cycle regulated; GO_component: GO:0030874 - nucleolar chromatin [Evidence IPI] [PMID 20814424]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051731 - polynucleotide 5'-hydroxyl-kinase activity [Evidence IDA] [PMID 20814424]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000448 - cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 23175604]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0006363 - termination of RNA polymerase I transcription [Evidence IMP] [PMID 20814424]; Grc3p 2168171..2170354 Sugiyamaella lignohabitans 30037742 AWJ20_684 CDS AWJ20_684 NC_031672.1 2172059 2172601 D uncharacterized protein 2172059..2172601 Sugiyamaella lignohabitans 30037743 AWJ20_685 CDS SFL1 NC_031672.1 2172845 2175229 R Transcriptional repressor and activator; involved in repression of flocculation-related genes, and activation of stress responsive genes; negatively regulated by cAMP-dependent protein kinase A subunit Tpk2p; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12024012]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 11399075]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 12024012]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9755175]; GO_function: GO:0001103 - RNA polymerase II repressing transcription factor binding [Evidence IPI] [PMID 11399075]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0001133 - sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IPI] [PMID 11399075]; GO_function: GO:0001133 - sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IPI] [PMID 9755175]; GO_process: GO:0016458 - gene silencing [Evidence IMP] [PMID 15016375]; GO_process: GO:1900460 - negative regulation of invasive growth in response to glucose limitation by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15466424]; GO_process: GO:1900460 - negative regulation of invasive growth in response to glucose limitation by negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 9811878]; GO_process: GO:1900462 - negative regulation of pseudohyphal growth by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12024012]; GO_process: GO:1900462 - negative regulation of pseudohyphal growth by negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 9811878]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17594096]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sfl1p complement(2172845..2175229) Sugiyamaella lignohabitans 30037744 AWJ20_686 CDS CYB2 NC_031672.1 2192339 2193463 R Cytochrome b2 (L-lactate cytochrome-c oxidoreductase); component of the mitochondrial intermembrane space, required for lactate utilization; expression is repressed by glucose and anaerobic conditions; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 3004948]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IDA] [PMID 3004948]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006089 - lactate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cyb2p complement(2192339..2193463) Sugiyamaella lignohabitans 30037745 AWJ20_687 CDS TPO3 NC_031672.1 2196663 2198492 R Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; specific for spermine; localizes to the plasma membrane; TPO3 has a paralog, TPO2, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo3p complement(2196663..2198492) Sugiyamaella lignohabitans 30037746 AWJ20_688 CDS LSC1 NC_031672.1 2199598 2200644 R Alpha subunit of succinyl-CoA ligase; succinyl-CoA ligase is a mitochondrial enzyme of the TCA cycle that catalyzes the nucleotide-dependent conversion of succinyl-CoA to succinate; phosphorylated; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9874242]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003878 - ATP citrate synthase activity [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IEA,IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IDA,IMP,ISS] [PMID 9874242]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence IDA] [PMID 9874242]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; succinate--CoA ligase (GDP-forming) subunit alpha complement(2199598..2200644) Sugiyamaella lignohabitans 30037747 AWJ20_689 CDS BRF1 NC_031672.1 2203200 2205263 D transcription factor TFIIIB subunit BRF1 2203200..2205263 Sugiyamaella lignohabitans 30037748 AWJ20_690 CDS AWJ20_690 NC_031672.1 2204273 2207196 R uncharacterized protein complement(join(2204273..2204752,2206018..2207196)) Sugiyamaella lignohabitans 30037750 AWJ20_691 CDS CDC48 NC_031672.1 2208192 2208957 D AAA ATPase; subunit of polyubiquitin-selective segregase complex involved in ERAD, cell wall integrity during heat stress, mitotic spindle disassembly; subunit of complex involved in mitochondria-associated degradation; role in mobilizing membrane bound transcription factors by regulated ubiquitin/proteasome-dependent processing, in macroautophagy, PMN, RAD, ribophagy, homotypic ER membrane fusion, disassembly of Met30p from SCF complex, functional ortholog of human p97/VCP; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11598205]; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11733065]; GO_component: GO:0036266 - Cdc48p-Npl4p-Vms1p AAA ATPase complex [Evidence IDA] [PMID 21070972]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15910746]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23479637]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 15910746]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 21070972]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9436996]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 7492595]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008599 - protein phosphatase type 1 regulator activity [Evidence IMP] [PMID 23418575]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 11733065]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11740563]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11813000]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11739805]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11756557]; GO_process: GO:1990171 - SCF complex disassembly in response to cadmium stress [Evidence IMP] [PMID 23000173]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18812321]; GO_process: GO:0016320 - endoplasmic reticulum membrane fusion [Evidence IMP] [PMID 7553849]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20855502]; GO_process: GO:0072671 - mitochondria-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21070972]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 14636562]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 22718752]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 20855502]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11598205]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11733065]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20206597]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11740563]; GO_process: GO:0034517 - ribophagy [Evidence IMP] [PMID 20508643]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23479637]; GO_process: GO:0031134 - sister chromatid biorientation [Evidence IMP] [PMID 20483956]; GO_process: GO:0006810 - transport [Evidence IEA]; AAA family ATPase CDC48 join(2208192..2208464,2208883..2208957) Sugiyamaella lignohabitans 30037751 AWJ20_692 CDS CDC48 NC_031672.1 2209079 2210863 D AAA ATPase; subunit of polyubiquitin-selective segregase complex involved in ERAD, cell wall integrity during heat stress, mitotic spindle disassembly; subunit of complex involved in mitochondria-associated degradation; role in mobilizing membrane bound transcription factors by regulated ubiquitin/proteasome-dependent processing, in macroautophagy, PMN, RAD, ribophagy, homotypic ER membrane fusion, disassembly of Met30p from SCF complex, functional ortholog of human p97/VCP; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11598205]; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11733065]; GO_component: GO:0036266 - Cdc48p-Npl4p-Vms1p AAA ATPase complex [Evidence IDA] [PMID 21070972]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15910746]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23479637]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 15910746]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 21070972]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9436996]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 7492595]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008599 - protein phosphatase type 1 regulator activity [Evidence IMP] [PMID 23418575]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 11733065]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11740563]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11813000]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11739805]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11756557]; GO_process: GO:1990171 - SCF complex disassembly in response to cadmium stress [Evidence IMP] [PMID 23000173]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18812321]; GO_process: GO:0016320 - endoplasmic reticulum membrane fusion [Evidence IMP] [PMID 7553849]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20855502]; GO_process: GO:0072671 - mitochondria-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21070972]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 14636562]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 22718752]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 20855502]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11598205]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11733065]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20206597]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11740563]; GO_process: GO:0034517 - ribophagy [Evidence IMP] [PMID 20508643]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23479637]; GO_process: GO:0031134 - sister chromatid biorientation [Evidence IMP] [PMID 20483956]; GO_process: GO:0006810 - transport [Evidence IEA]; AAA family ATPase CDC48 2209079..2210863 Sugiyamaella lignohabitans 30037752 AWJ20_693 CDS MSS4 NC_031672.1 2212677 2214509 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(2212677..2214509) Sugiyamaella lignohabitans 30037753 AWJ20_694 CDS PRP9 NC_031672.1 2216274 2218109 R Subunit of the SF3a splicing factor complex; required for spliceosome assembly; acts after the formation of the U1 snRNP-pre-mRNA complex; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 8065365]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 8969185]; Prp9p complement(2216274..2218109) Sugiyamaella lignohabitans 30037754 AWJ20_695 CDS TFG1 NC_031672.1 2223275 2225263 D TFIIF (Transcription Factor II) largest subunit; involved in both transcription initiation and elongation of RNA polymerase II; homologous to human RAP74; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 12242279]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 7995524]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IDA] [PMID 14749386]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IC] [PMID 7995524]; GO_function: GO:0072542 - protein phosphatase activator activity [Evidence IDA] [PMID 11904169]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 7995524]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IGI] [PMID 11003641]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 11904169]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001111 - promoter clearance from RNA polymerase II promoter [Evidence IC] [PMID 7995524]; GO_process: GO:0080163 - regulation of protein serine/threonine phosphatase activity [Evidence IDA] [PMID 11904169]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 18362165]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 1331084]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 18362165]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IGI,IMP] [PMID 15572698]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IGI,IMP] [PMID 16081422]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IGI] [PMID 16147988]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IMP] [PMID 18362165]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IGI] [PMID 7724527]; transcription factor IIF subunit TFG1 2223275..2225263 Sugiyamaella lignohabitans 30037755 AWJ20_698 CDS HNT1 NC_031672.1 2228732 2229091 D Adenosine 5'-monophosphoramidase; interacts physically and genetically with Kin28p, a CDK and TFIIK subunit, and genetically with CAK1; member of the histidine triad (HIT) superfamily of nucleotide-binding proteins and similar to Hint; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IDA] [PMID 11805111]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence ISS] [PMID 9164465]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IDA] [PMID 11805111]; Hnt1p 2228732..2229091 Sugiyamaella lignohabitans 30037758 AWJ20_699 CDS NAT1 NC_031672.1 2229313 2231907 R Subunit of protein N-terminal acetyltransferase NatA; NatA is comprised of Nat1p, Ard1p, and Nat5p; N-terminally acetylates many proteins, which influences multiple processes such as the cell cycle, heat-shock resistance, mating, sporulation, and telomeric silencing; GO_component: GO:0031415 - NatA complex [Evidence IDA] [PMID 14517307]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IDA] [PMID 14517307]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IDA,IMP] [PMID 2551674]; GO_process: GO:0006474 - N-terminal protein amino acid acetylation [Evidence IDA,IMP] [PMID 2551674]; Nat1p complement(2229313..2231907) Sugiyamaella lignohabitans 30037759 AWJ20_700 CDS RIB2 NC_031672.1 2237237 2238337 R Bifunctional DRAP deaminase tRNA:pseudouridine synthase; the deaminase catalyzes the third step in riboflavin biosynthesis and the synthase catalyzes formation of pseudouridine at position 32 in cytoplasmic tRNAs; RIB2 has a paralog, PUS9, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence ISM] [PMID 15466869]; GO_function: GO:0043723 - 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate deaminase activity [Evidence IMP] [PMID 4555411]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA,IMP] [PMID 15466869]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence ISS] [PMID 8710514]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 4555411]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 5366000]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA,IMP] [PMID 15466869]; bifunctional DRAP deaminase/tRNA pseudouridine synthase RIB2 complement(2237237..2238337) Sugiyamaella lignohabitans 30037762 AWJ20_701 CDS PUS9 NC_031672.1 2238883 2239356 R Mitochondrial tRNA:pseudouridine synthase; catalyzes the formation of pseudouridine at position 32 in mitochondrial tRNAs; contains an N-terminal mitochondrial targeting sequence; PUS9 has a paralog, RIB2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP,ISM] [PMID 15466869]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA,IMP] [PMID 15466869]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA,IMP] [PMID 15466869]; pseudouridine synthase PUS9 complement(2238883..2239356) Sugiyamaella lignohabitans 30037763 AWJ20_702 CDS SDA1 NC_031672.1 2239989 2242130 D Protein required for actin organization and passage through Start; highly conserved nuclear protein; required for actin cytoskeleton organization; plays a critical role in G1 events; binds Nap1p; involved in 60S ribosome biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704371]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IEA]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 10704371]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 15107621]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 15107621]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007089 - traversing start control point of mitotic cell cycle [Evidence IMP] [PMID 11160833]; Sda1p 2239989..2242130 Sugiyamaella lignohabitans 30037764 AWJ20_703 CDS AWJ20_703 NC_031672.1 2242616 2242927 D uncharacterized protein 2242616..2242927 Sugiyamaella lignohabitans 30037765 AWJ20_704 CDS DBP8 NC_031672.1 2243040 2244383 R ATPase, putative RNA helicase of the DEAD-box family; component of 90S preribosome complex involved in production of 18S rRNA and assembly of 40S small ribosomal subunit; ATPase activity stimulated by association with Esf2p; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11222764]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IMP] [PMID 11222764]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 16772403]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11222764]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11222764]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11222764]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; ATP-dependent RNA helicase DBP8 complement(2243040..2244383) Sugiyamaella lignohabitans 30037766 AWJ20_705 CDS SKI6 NC_031672.1 2244740 2245285 R Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp41p (EXOSC4); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034473 - U1 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9390555]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071028 - nuclear mRNA surveillance [Evidence IGI,IMP] [PMID 11030620]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IMP] [PMID 18591258]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI] [PMID 12769863]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 9482746]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IMP] [PMID 10508172]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Ski6p complement(2244740..2245285) Sugiyamaella lignohabitans 30037767 AWJ20_706 CDS TMA22 NC_031672.1 2246114 2246680 D hypothetical protein; associates with ribosomes and has a putative RNA binding domain; interacts with Tma20p; similar to human GRAP and human DRP1, which interacts with human Tma20p homolog MCT-1; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 10093218]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; Tma22p 2246114..2246680 Sugiyamaella lignohabitans 30037768 AWJ20_707 CDS ORT1 NC_031672.1 2246923 2248038 R Ornithine transporter of the mitochondrial inner membrane; exports ornithine from mitochondria as part of arginine biosynthesis; human ortholog is associated with hyperammonaemia-hyperornithinaemia-homocitrullinuria (HHH) syndrome; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IDA] [PMID 8798783]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0000064 - L-ornithine transmembrane transporter activity [Evidence IDA] [PMID 9237680]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IMP] [PMID 8798783]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0000066 - mitochondrial ornithine transport [Evidence IDA] [PMID 9237680]; GO_process: GO:0006810 - transport [Evidence IEA]; Ort1p complement(2246923..2248038) Sugiyamaella lignohabitans 30037769 AWJ20_708 CDS AWJ20_708 NC_031672.1 2248753 2249604 R NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein complement(2248753..2249604) Sugiyamaella lignohabitans 30037770 AWJ20_709 CDS HRD3 NC_031672.1 2251710 2254736 R ER membrane protein that plays a central role in ERAD; forms HRD complex with Hrd1p and ER-associated protein degradation (ERAD) determinants that engages in lumen to cytosol communication and coordination of ERAD events; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000838 - Hrd1p ubiquitin ligase ERAD-M complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IPI] [PMID 16619026]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0034099 - luminal surveillance complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 11390656]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 12105183]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 24292014]; ubiquitin ligase complex subunit HRD3 complement(2251710..2254736) Sugiyamaella lignohabitans 30037771 AWJ20_710 CDS TAD2 NC_031672.1 2255737 2256066 D Subunit of tRNA-specific adenosine-34 deaminase; forms a heterodimer with Tad3p that converts adenosine to inosine at the wobble position of several tRNAs; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008251 - tRNA-specific adenosine deaminase activity [Evidence IDA] [PMID 10550050]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 10550050]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Tad2p 2255737..2256066 Sugiyamaella lignohabitans 30037773 AWJ20_711 CDS SNX4 NC_031672.1 2256298 2257755 R Sorting nexin; involved in retrieval of late-Golgi SNAREs from post-Golgi endosomes to the trans-Golgi network and in cytoplasm to vacuole transport; contains a PX phosphoinositide-binding domain; forms complexes with Snx41p and with Atg20p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12048214]; GO_component: GO:0005769 - early endosome [Evidence IDA] [PMID 17420293]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 12048214]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 12048214]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 12554655]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 12048214]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 12554655]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IGI,IMP,IPI] [PMID 12554655]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12554655]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Snx4p complement(2256298..2257755) Sugiyamaella lignohabitans 30037774 AWJ20_712 CDS THG1 NC_031672.1 2258434 2259123 R tRNAHis guanylyltransferase; adds a guanosine residue to the 5' end of tRNAH is after transcription and RNase P cleavage; can also catalyze reverse (3'-5') polymerization with certain substrates in a template-dependent reaction; couples nuclear division and migration to cell budding and cytokinesis; essential enzyme conserved among eukaryotes; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008193 - tRNA guanylyltransferase activity [Evidence IEA]; GO_function: GO:0008193 - tRNA guanylyltransferase activity [Evidence IDA] [PMID 14633974]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 14633974]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Thg1p complement(2258434..2259123) Sugiyamaella lignohabitans 30037775 AWJ20_713 CDS RPN3 NC_031672.1 2260393 2261964 D Essential non-ATPase regulatory subunit of the 26S proteasome lid; similar to the p58 subunit of the human 26S proteasome; temperature-sensitive alleles cause metaphase arrest, suggesting a role for the proteasome in cell cycle control; GO_component: GO:0000502 - proteasome complex [Evidence IEA,IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0042176 - regulation of protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 8982460]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 9697412]; proteasome regulatory particle lid subunit RPN3 2260393..2261964 Sugiyamaella lignohabitans 30037776 AWJ20_714 CDS JHD2 NC_031672.1 2262759 2265632 D JmjC domain family histone demethylase; promotes global demethylation of H3K4 and repression of noncoding intergenic transcription during sporulation; removes methyl groups added by Set1p methyltransferase; negatively regulated by H3K14 acetylation; protein levels regulated by Not4p polyubiquitin-mediated degradation; regulates spore differentiation timing by extending period of active transcription in opposition to programmed global transcriptional quiescence; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0032453 - histone demethylase activity (H3-K4 specific) [Evidence IDA,IMP] [PMID 17310254]; GO_function: GO:0032453 - histone demethylase activity (H3-K4 specific) [Evidence IMP] [PMID 17369256]; GO_function: GO:0034649 - histone demethylase activity (H3-monomethyl-K4 specific) [Evidence IMP] [PMID 19346402]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0034720 - histone H3-K4 demethylation [Evidence IMP] [PMID 23123093]; GO_process: GO:0016577 - histone demethylation [Evidence IDA,IMP] [PMID 17310254]; GO_process: GO:0016577 - histone demethylation [Evidence IMP] [PMID 17369256]; GO_process: GO:0097549 - negative regulation of transcription by chromatin organization [Evidence IMP] [PMID 23123093]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Jhd2p 2262759..2265632 Sugiyamaella lignohabitans 30037777 AWJ20_715 CDS MET12 NC_031672.1 2265852 2267807 R Protein with MTHFR activity in vitro; null mutant has no phenotype and is prototrophic for methionine; MET13 encodes major isozyme of methylenetetrahydrofolate reductase (MTHFR); GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA,IEA]; GO_function: GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IDA,ISS] [PMID 10600168]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006555 - methionine metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; methylenetetrahydrofolate reductase (NAD(P)H) MET12 complement(2265852..2267807) Sugiyamaella lignohabitans 30037778 AWJ20_716 CDS FMP52 NC_031672.1 2268691 2269407 D hypothetical protein; localized to the mitochondrial outer membrane; induced by treatment with 8-methoxypsoralen and UVA irradiation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fmp52p 2268691..2269407 Sugiyamaella lignohabitans 30037779 AWJ20_717 CDS AWJ20_717 NC_031672.1 2270875 2271927 D uncharacterized protein 2270875..2271927 Sugiyamaella lignohabitans 30037780 AWJ20_718 CDS KAR2 NC_031672.1 2277835 2279868 D ATPase involved in protein import into the ER; also acts as a chaperone to mediate protein folding in the ER and may play a role in ER export of soluble proteins; regulates the unfolded protein response via interaction with Ire1p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 2661018]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0034099 - luminal surveillance complex [Evidence IDA] [PMID 16873065]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 1325440]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 12808051]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 23704572]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11381090]; GO_process: GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 7568189]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IGI,IMP] [PMID 10069807]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 10367885]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 7568189]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006986 - response to unfolded protein [Evidence IMP] [PMID 12808051]; Hsp70 family ATPase KAR2 2277835..2279868 Sugiyamaella lignohabitans 30037781 AWJ20_719 CDS MAD2 NC_031672.1 2280573 2281067 R Component of the spindle-assembly checkpoint complex; delays onset of anaphase in cells with defects in mitotic spindle assembly; forms a complex with Mad1p; regulates APC/C activity during prometaphase and metaphase of meiosis I; gene dosage imbalance between MAD1 and MAD2 leads to chromosome instability; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 12473689]; GO_component: GO:0033597 - mitotic checkpoint complex [Evidence IPI] [PMID 10704439]; GO_component: GO:0033597 - mitotic checkpoint complex [Evidence IDA,IPI] [PMID 11726501]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 12473689]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0051312 - chromosome decondensation [Evidence IMP] [PMID 17151360]; GO_process: GO:0044774 - mitotic DNA integrity checkpoint [Evidence IGI] [PMID 16651657]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IEA]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI,IMP] [PMID 10704439]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IPI] [PMID 9461437]; spindle checkpoint protein MAD2 complement(2280573..2281067) Sugiyamaella lignohabitans 30037782 AWJ20_720 CDS TIF5 NC_031672.1 2283075 2284286 R Translation initiation factor eIF5; functions both as a GTPase-activating protein to mediate hydrolysis of ribosome-bound GTP and as a GDP dissociation inhibitor to prevent recycling of eIF2; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IPI] [PMID 9671501]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IDA] [PMID 17242201]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0005092 - GDP-dissociation inhibitor activity [Evidence IDA,IMP] [PMID 20485439]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence ISS] [PMID 11092890]; GO_function: GO:0005096 - GTPase activator activity [Evidence IPI] [PMID 9395514]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 22683627]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 9395514]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 12008673]; GO_function: GO:0003743 - translation initiation factor activity [Evidence ISS] [PMID 8486705]; GO_function: GO:0003743 - translation initiation factor activity [Evidence ISS] [PMID 9395514]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 15145951]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA] [PMID 22683627]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IPI] [PMID 22851688]; GO_process: GO:0001732 - formation of translation initiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0042256 - mature ribosome assembly [Evidence IMP] [PMID 11331597]; GO_process: GO:0045947 - negative regulation of translational initiation [Evidence IGI,IMP] [PMID 20485439]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP,IPI] [PMID 11331597]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA,IMP] [PMID 22851688]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; translation initiation factor eIF5 complement(2283075..2284286) Sugiyamaella lignohabitans 30037784 AWJ20_721 CDS AWJ20_721 NC_031672.1 2284009 2284299 D uncharacterized protein 2284009..2284299 Sugiyamaella lignohabitans 30037785 AWJ20_722 CDS SNT2 NC_031672.1 2287616 2291797 D DNA-binding E3 ubiquitin-protein ligase SNT2 2287616..2291797 Sugiyamaella lignohabitans 30037786 AWJ20_723 CDS LEA1 NC_031672.1 2291910 2292602 R Component of U2 snRNP complex; disruption causes reduced U2 snRNP levels; physically interacts with Msl1p; putative homolog of human U2A' snRNP protein; GO_component: GO:0005686 - U2 snRNP [Evidence IDA,IPI] [PMID 9799242]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 9799242]; Lea1p complement(2291910..2292602) Sugiyamaella lignohabitans 30037787 AWJ20_724 CDS THI6 NC_031672.1 2292930 2294531 D Thiamine-phosphate diphosphorylase and hydroxyethylthiazole kinase; required for thiamine biosynthesis; GFP-fusion protein localizes to the cytoplasm in a punctate pattern; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16850348]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004417 - hydroxyethylthiazole kinase activity [Evidence IEA,IEA]; GO_function: GO:0004417 - hydroxyethylthiazole kinase activity [Evidence IMP] [PMID 7982968]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA,IEA]; GO_function: GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IMP] [PMID 7982968]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IMP] [PMID 7982968]; GO_process: GO:0009229 - thiamine diphosphate biosynthetic process [Evidence IEA]; bifunctional hydroxyethylthiazole kinase/thiamine-phosphate diphosphorylase 2292930..2294531 Sugiyamaella lignohabitans 30037788 AWJ20_725 CDS NMA111 NC_031672.1 2295262 2298480 D Serine protease and general molecular chaperone; involved in response to heat stress and promotion of apoptosis; may contribute to lipid homeostasis; sequence similarity to the mammalian Omi/HtrA2 family of serine proteases; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14657274]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence ISS] [PMID 14534547]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IDA] [PMID 18946088]; GO_process: GO:0006915 - apoptotic process [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP,ISS] [PMID 14657274]; GO_process: GO:0006915 - apoptotic process [Evidence IMP,ISS] [PMID 16470384]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 16608876]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IMP,IPI] [PMID 16470384]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 18946088]; GO_process: GO:0030163 - protein catabolic process [Evidence IMP] [PMID 18946088]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Nma111p 2295262..2298480 Sugiyamaella lignohabitans 30037789 AWJ20_726 CDS CTF8 NC_031672.1 2302024 2302512 D Chromosome transmission fidelity protein 8 2302024..2302512 Sugiyamaella lignohabitans 30037790 AWJ20_727 CDS TOS1 NC_031672.1 2306445 2307887 D Covalently-bound cell wall hypothetical protein; identified as a cell cycle regulated SBF target gene; deletion mutants are highly resistant to treatment with beta-1,3-glucanase; has sequence similarity to YJL171C; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11935221]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Tos1p 2306445..2307887 Sugiyamaella lignohabitans 30037791 AWJ20_728 CDS AWJ20_728 NC_031672.1 2307105 2307650 R uncharacterized protein complement(2307105..2307650) Sugiyamaella lignohabitans 30037792 AWJ20_729 CDS PCK1 NC_031672.1 2311470 2313143 D Phosphoenolpyruvate carboxykinase; key enzyme in gluconeogenesis, catalyzes early reaction in carbohydrate biosynthesis, glucose represses transcription and accelerates mRNA degradation, regulated by Mcm1p and Cat8p, located in the cytosol; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 196563]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA,IEA]; GO_function: GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IDA] [PMID 16330239]; GO_function: GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IMP] [PMID 2689220]; GO_function: GO:0004611 - phosphoenolpyruvate carboxykinase activity [Evidence IEA]; GO_function: GO:0017076 - purine nucleotide binding [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA,IEA,IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEP] [PMID 2689220]; phosphoenolpyruvate carboxykinase PCK1 2311470..2313143 Sugiyamaella lignohabitans 30037793 AWJ20_730 CDS SVF1 NC_031672.1 2314990 2316458 D Protein with a potential role in cell survival pathways; required for the diauxic growth shift; expression in mammalian cells increases survival under conditions inducing apoptosis; mutant has increased aneuploidy tolerance; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 16034825]; GO_process: GO:0006979 - response to oxidative stress [Evidence IEA]; Svf1p join(2314990..2315012,2315303..2316458) Sugiyamaella lignohabitans 30037795 AWJ20_731 CDS AWJ20_731 NC_031672.1 2319051 2320910 R uncharacterized protein complement(2319051..2320910) Sugiyamaella lignohabitans 30037796 AWJ20_732 CDS AWJ20_732 NC_031672.1 2324744 2327986 D uncharacterized protein 2324744..2327986 Sugiyamaella lignohabitans 30037797 AWJ20_733 CDS AWJ20_733 NC_031672.1 2325307 2325567 R uncharacterized protein complement(2325307..2325567) Sugiyamaella lignohabitans 30037798 AWJ20_734 CDS PRP42 NC_031672.1 2328276 2330279 R U1 snRNP protein involved in splicing; required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9418882]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 9418882]; Prp42p complement(2328276..2330279) Sugiyamaella lignohabitans 30037799 AWJ20_735 CDS HEM3 NC_031672.1 2331325 2332548 D Porphobilinogen deaminase; catalyzes the conversion of 4-porphobilinogen to hydroxymethylbilane, the third step in heme biosynthesis; localizes to the cytoplasm and nucleus; expression is regulated by Hap2p-Hap3p, but not by levels of heme; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA,IEA]; GO_function: GO:0004418 - hydroxymethylbilane synthase activity [Evidence IMP] [PMID 1508149]; GO_function: GO:0004418 - hydroxymethylbilane synthase activity [Evidence IMP] [PMID 323256]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 14559249]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 323256]; GO_process: GO:0018160 - peptidyl-pyrromethane cofactor linkage [Evidence IEA]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; GO_process: GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]; hydroxymethylbilane synthase 2331325..2332548 Sugiyamaella lignohabitans 30037800 AWJ20_737 CDS AWJ20_737 NC_031672.1 2336375 2336953 D putative isochorismatase family protein yrdC 2336375..2336953 Sugiyamaella lignohabitans 30037802 AWJ20_738 CDS BMH2 NC_031672.1 2341775 2342560 D 14-3-3 protein, minor isoform; controls proteome at post-transcriptional level, binds proteins and DNA, involved in regulation of many processes including exocytosis, vesicle transport, Ras/MAPK signaling, and rapamycin-sensitive signaling; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress; BMH2 has a paralog, BMH1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12167636]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 12167636]; GO_function: GO:0050815 - phosphoserine binding [Evidence IMP] [PMID 9822578]; GO_function: GO:0019904 - protein domain specific binding [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 14704161]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI] [PMID 19934224]; GO_process: GO:0007265 - Ras protein signal transduction [Evidence IGI] [PMID 9215628]; GO_process: GO:0030437 - ascospore formation [Evidence IGI] [PMID 9215628]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IGI] [PMID 17559233]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IGI] [PMID 9215628]; GO_process: GO:0043066 - negative regulation of apoptotic process [Evidence IMP] [PMID 22785534]; GO_process: GO:0051436 - negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle [Evidence IPI] [PMID 17030612]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IGI] [PMID 19934224]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 9215628]; GO_process: GO:0001402 - signal transduction involved in filamentous growth [Evidence IGI] [PMID 9215628]; 14-3-3 family protein BMH2 2341775..2342560 Sugiyamaella lignohabitans 30037803 AWJ20_739 CDS AWJ20_739 NC_031672.1 2343269 2343760 D uncharacterized protein 2343269..2343760 Sugiyamaella lignohabitans 30037804 AWJ20_740 CDS PRO3 NC_031672.1 2344022 2344915 R Delta 1-pyrroline-5-carboxylate reductase; catalyzes the last step in proline biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 7009582]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA,IEA]; GO_function: GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence ISS] [PMID 1508147]; GO_function: GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IGI] [PMID 2824433]; GO_process: GO:0055129 - L-proline biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IMP,ISS] [PMID 1508147]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IMP] [PMID 2824433]; pyrroline-5-carboxylate reductase complement(2344022..2344915) Sugiyamaella lignohabitans 30037806 AWJ20_741 CDS PEX5 NC_031672.1 2345680 2347497 R Peroxisomal membrane signal receptor for peroxisomal matrix proteins; receptor for the C-terminal tripeptide signal sequence (PTS1) of peroxisomal matrix proteins; required for peroxisomal matrix protein import; also proposed to have PTS1-receptor independent functions; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8858166]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 16849337]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IPI] [PMID 8858166]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 15632140]; GO_function: GO:0005052 - peroxisome matrix targeting signal-1 binding [Evidence IMP] [PMID 11154700]; GO_function: GO:0005052 - peroxisome matrix targeting signal-1 binding [Evidence IDA] [PMID 7980572]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 15798189]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 12595255]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IMP,IPI] [PMID 16849337]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pex5p complement(2345680..2347497) Sugiyamaella lignohabitans 30037807 AWJ20_742 CDS SRB4 NC_031672.1 2348721 2349821 R Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; required for basal RNA polymerase II transcription; homozygosity of the human MED17 L371P mutation is associated with infantile cerebral and cerebellar atrophy with poor myelination; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_function: GO:0033613 - activating transcription factor binding [Evidence IDA] [PMID 9660972]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IMP] [PMID 19805365]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IPI] [PMID 21415355]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 16962561]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 8187178]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IMP] [PMID 16263706]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Srb4p complement(2348721..2349821) Sugiyamaella lignohabitans 30037808 AWJ20_743 CDS CWC2 NC_031672.1 2351022 2351729 D Member of the NineTeen Complex (NTC); this complex contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; binds directly to U6 snRNA; similar to S. pombe Cwf2; GO_component: GO:0000974 - Prp19 complex [Evidence IPI] [PMID 12088152]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 19435883]; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IDA] [PMID 19435883]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IDA] [PMID 19435883]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 19435883]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0036002 - pre-mRNA binding [Evidence IDA] [PMID 19435883]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IC] [PMID 19435883]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0045292 - mRNA cis splicing, via spliceosome [Evidence IMP] [PMID 19435883]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 12088152]; GO_process: GO:0000387 - spliceosomal snRNP assembly [Evidence IDA] [PMID 19435883]; Cwc2p 2351022..2351729 Sugiyamaella lignohabitans 30037809 AWJ20_744 CDS ALY2 NC_031672.1 2354854 2357517 D Alpha arrestin; controls nutrient-mediated intracellular sorting of permease Gap1p; interacts with AP-1 subunit Apl4p; phosphorylated by Npr1p and also by cyclin-CDK complex Pcl7p-Pho85p; promotes endocytosis of plasma membrane proteins; ALY2 has a paralog, ALY1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005769 - early endosome [Evidence IDA] [PMID 20739461]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 20739461]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 20956561]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IPI] [PMID 18976803]; GO_process: GO:2000397 - positive regulation of ubiquitin-dependent endocytosis [Evidence IMP] [PMID 20956561]; GO_process: GO:0032386 - regulation of intracellular transport [Evidence IMP] [PMID 20739461]; GO_process: GO:0070086 - ubiquitin-dependent endocytosis [Evidence ISA] [PMID 18976803]; Aly2p 2354854..2357517 Sugiyamaella lignohabitans 30037810 AWJ20_745 CDS AWJ20_745 NC_031672.1 2358042 2358770 R uncharacterized protein complement(2358042..2358770) Sugiyamaella lignohabitans 30037811 AWJ20_746 CDS saf1 NC_031672.1 2359034 2359780 D splicing associated factor 2359034..2359780 Sugiyamaella lignohabitans 30037812 AWJ20_747 CDS AWJ20_747 NC_031672.1 2359964 2362111 R ribosome biogenesis protein Rix1 (predicted) complement(2359964..2362111) Sugiyamaella lignohabitans 30037813 AWJ20_748 CDS DAL1 NC_031672.1 2366473 2367861 D Allantoinase; converts allantoin to allantoate in the first step of allantoin degradation; expression sensitive to nitrogen catabolite repression; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004038 - allantoinase activity [Evidence IEA,IEA]; GO_function: GO:0004038 - allantoinase activity [Evidence IMP] [PMID 1803816]; GO_function: GO:0004038 - allantoinase activity [Evidence IMP] [PMID 4604238]; GO_function: GO:0050897 - cobalt ion binding [Evidence IEA]; GO_function: GO:0016888 - endodeoxyribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_function: GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA]; GO_process: GO:0009442 - allantoin assimilation pathway [Evidence IMP] [PMID 1803816]; GO_process: GO:0009442 - allantoin assimilation pathway [Evidence IMP] [PMID 4604238]; GO_process: GO:0000256 - allantoin catabolic process [Evidence IEA,IEA]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IEA]; allantoinase 2366473..2367861 Sugiyamaella lignohabitans 30037814 AWJ20_749 CDS AWJ20_749 NC_031672.1 2366673 2366999 R uncharacterized protein complement(2366673..2366999) Sugiyamaella lignohabitans 30037815 AWJ20_750 CDS ATP4 NC_031672.1 2368217 2368882 R Subunit b of the stator stalk of mitochondrial F1F0 ATP synthase; ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; contributes to the oligomerization of the complex, which in turn determines the shape of inner membrane cristae; phosphorylated; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IBA,IEA]; GO_component: GO:0000274 - mitochondrial proton-transporting ATP synthase, stator stalk [Evidence IDA] [PMID 18722382]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IMP] [PMID 8068646]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP] [PMID 8068646]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0035786 - protein complex oligomerization [Evidence IMP] [PMID 18293929]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit 4 complement(2368217..2368882) Sugiyamaella lignohabitans 30037817 AWJ20_751 CDS ENV9 NC_031672.1 2370425 2371387 R Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p complement(2370425..2371387) Sugiyamaella lignohabitans 30037818 AWJ20_752 CDS AWJ20_752 NC_031672.1 2372578 2376851 D phosphatidylinositol-4-phosphate 5-kinase its3 join(2372578..2374231,2376370..2376413,2376795..2376851) Sugiyamaella lignohabitans 30037819 AWJ20_753 CDS ACK1 NC_031672.1 2377133 2380531 D Protein that functions in the cell wall integrity pathway; functions upstream of Pkc1p; GFP-fusion protein expression is induced in response to the DNA-damaging agent MMS; non-tagged Ack1p is detected in purified mitochondria; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 18806213]; GO_process: GO:0009967 - positive regulation of signal transduction [Evidence IMP] [PMID 18806213]; Ack1p 2377133..2380531 Sugiyamaella lignohabitans 30037820 AWJ20_754 CDS SUB2 NC_031672.1 2381613 2381870 D Component of the TREX complex required for nuclear mRNA export; member of the DEAD-box RNA helicase superfamily and is involved in early and late steps of spliceosome assembly; homolog of the human splicing factor hUAP56; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IPI] [PMID 15942929]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence TAS] [PMID 9476892]; GO_component: GO:0000346 - transcription export complex [Evidence IPI] [PMID 11979277]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IGI,ISA] [PMID 11156602]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 15942929]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 18614048]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IDA,IMP,IPI] [PMID 11675790]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IDA,IMP] [PMID 11696331]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 11156602]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 17960421]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 17537816]; GO_process: GO:0006810 - transport [Evidence IEA]; ATP-dependent RNA helicase SUB2 2381613..2381870 Sugiyamaella lignohabitans 30037821 AWJ20_755 CDS SUB2 NC_031672.1 2382998 2383756 D Component of the TREX complex required for nuclear mRNA export; member of the DEAD-box RNA helicase superfamily and is involved in early and late steps of spliceosome assembly; homolog of the human splicing factor hUAP56; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IPI] [PMID 15942929]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence TAS] [PMID 9476892]; GO_component: GO:0000346 - transcription export complex [Evidence IPI] [PMID 11979277]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IGI,ISA] [PMID 11156602]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 15942929]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 18614048]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IDA,IMP,IPI] [PMID 11675790]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IDA,IMP] [PMID 11696331]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 11156602]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 17960421]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 17537816]; GO_process: GO:0006810 - transport [Evidence IEA]; ATP-dependent RNA helicase SUB2 2382998..2383756 Sugiyamaella lignohabitans 30037822 AWJ20_756 CDS AWJ20_756 NC_031672.1 2383998 2386193 R Transcriptional regulatory protein RXT3 complement(2383998..2386193) Sugiyamaella lignohabitans 30037823 AWJ20_757 CDS AWJ20_757 NC_031672.1 2387954 2390185 D Putative glycosidase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YIR007W is a non-essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; hydrolase 2387954..2390185 Sugiyamaella lignohabitans 30037824 AWJ20_758 CDS TAF10 NC_031672.1 2390474 2391379 R Subunit (145 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10817999]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 11940675]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8662725]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf10p complement(2390474..2391379) Sugiyamaella lignohabitans 30037825 AWJ20_759 CDS AWJ20_759 NC_031672.1 2392792 2394714 R uncharacterized protein complement(2392792..2394714) Sugiyamaella lignohabitans 30037826 AWJ20_760 CDS GLR1 NC_031672.1 2396421 2397857 D Cytosolic and mitochondrial glutathione oxidoreductase; converts oxidized glutathione to reduced glutathione; cytosolic Glr1p is the main determinant of the glutathione redox state of the mitochondrial intermembrane space; mitochondrial Glr1p has a role in resistance to hyperoxia; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 23613772]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23613772]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004362 - glutathione-disulfide reductase activity [Evidence IEA,IEA]; GO_function: GO:0004362 - glutathione-disulfide reductase activity [Evidence IDA] [PMID 19049979]; GO_function: GO:0004362 - glutathione-disulfide reductase activity [Evidence IDA] [PMID 7737505]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016668 - oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor [Evidence IEA]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 8951820]; GO_process: GO:0006749 - glutathione metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0010731 - protein glutathionylation [Evidence IGI] [PMID 20074363]; glutathione-disulfide reductase GLR1 2396421..2397857 Sugiyamaella lignohabitans 30037828 AWJ20_761 CDS SNP1 NC_031672.1 2398517 2399368 D Component of U1 snRNP required for mRNA splicing via spliceosome; substrate of the arginine methyltransferase Hmt1p; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein; protein abundance increases in response to DNA replication stress; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0000243 - commitment complex [Evidence IPI] [PMID 10072386]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0030619 - U1 snRNA binding [Evidence IPI] [PMID 1387202]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 10072386]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10072386]; Snp1p 2398517..2399368 Sugiyamaella lignohabitans 30037829 AWJ20_762 CDS PHO12 NC_031672.1 2401178 2402632 D acid phosphatase PHO12 2401178..2402632 Sugiyamaella lignohabitans 30037830 AWJ20_763 CDS PHO3 NC_031672.1 2403863 2405371 D acid phosphatase PHO3 2403863..2405371 Sugiyamaella lignohabitans 30037831 AWJ20_764 CDS AWJ20_764 NC_031672.1 2405864 2406829 D UPF0394 membrane protein 2405864..2406829 Sugiyamaella lignohabitans 30037832 AWJ20_765 CDS FOX2 NC_031672.1 2408943 2411612 R 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase; multifunctional enzyme of the peroxisomal fatty acid beta-oxidation pathway; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence ISM] [PMID 1551874]; GO_function: GO:0003857 - 3-hydroxyacyl-CoA dehydrogenase activity [Evidence IDA] [PMID 1551874]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004300 - enoyl-CoA hydratase activity [Evidence IDA] [PMID 1551874]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 10497229]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 1551874]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; bifunctional hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase FOX2 complement(2408943..2411612) Sugiyamaella lignohabitans 30037833 AWJ20_766 CDS ICL2 NC_031672.1 2413231 2414886 D 2-methylisocitrate lyase of the mitochondrial matrix; functions in the methylcitrate cycle to catalyze the conversion of 2-methylisocitrate to succinate and pyruvate; ICL2 transcription is repressed by glucose and induced by ethanol; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 11092862]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046421 - methylisocitrate lyase activity [Evidence IEA]; GO_function: GO:0046421 - methylisocitrate lyase activity [Evidence IDA] [PMID 11092862]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0019629 - propionate catabolic process, 2-methylcitrate cycle [Evidence IDA] [PMID 11092862]; methylisocitrate lyase ICL2 2413231..2414886 Sugiyamaella lignohabitans 30037834 AWJ20_767 CDS AWJ20_767 NC_031672.1 2415311 2418043 D Putative metalloendopeptidase; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; putative metalloendopeptidase 2415311..2418043 Sugiyamaella lignohabitans 30037835 AWJ20_768 CDS SHY1 NC_031672.1 2417642 2418382 R Mitochondrial inner membrane protein required for complex IV assembly; associates with complex IV assembly intermediates and complex III/complex IV supercomplexes; similar to human SURF1 involved in Leigh Syndrome; complex IV is also known as cytochrome c oxidase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 15306853]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 15306853]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9162072]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 11389896]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 9162072]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IMP,IPI] [PMID 17882259]; Shy1p complement(2417642..2418382) Sugiyamaella lignohabitans 30037836 AWJ20_769 CDS PFK26 NC_031672.1 2419129 2421405 R 6-phosphofructo-2-kinase; inhibited by phosphoenolpyruvate and sn-glycerol 3-phosphate; has negligible fructose-2,6-bisphosphatase activity; transcriptional regulation involves protein kinase A; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 1657152]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IEA,IEA]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IDA] [PMID 1322693]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IMP] [PMID 1657152]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA,IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0006003 - fructose 2,6-bisphosphate metabolic process [Evidence IEA]; GO_process: GO:0006003 - fructose 2,6-bisphosphate metabolic process [Evidence IMP] [PMID 1657152]; GO_process: GO:0006000 - fructose metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Pfk26p complement(2419129..2421405) Sugiyamaella lignohabitans 30037837 AWJ20_770 CDS AWJ20_770 NC_031672.1 2430298 2431905 R uncharacterized protein complement(2430298..2431905) Sugiyamaella lignohabitans 30037839 AWJ20_771 CDS AWJ20_771 NC_031672.1 2434301 2434804 D similar to ribonuclease H; uncharacterized protein 2434301..2434804 Sugiyamaella lignohabitans 30037840 AWJ20_772 CDS AWJ20_772 NC_031672.1 2437414 2441073 R Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; putative helicase complement(2437414..2441073) Sugiyamaella lignohabitans 30037841 AWJ20_773 CDS AWJ20_773 NC_031672.1 2441313 2441585 R Putative helicase with limited sequence similarity to human Rb protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YLR419W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; putative helicase complement(2441313..2441585) Sugiyamaella lignohabitans 30037842 AWJ20_774 CDS AWJ20_774 NC_031672.1 2447405 2448943 D uncharacterized protein 2447405..2448943 Sugiyamaella lignohabitans 30037843 AWJ20_775 CDS TNA1 NC_031672.1 2454484 2455848 D High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p 2454484..2455848 Sugiyamaella lignohabitans 30037844 AWJ20_776 CDS PUS7 NC_031672.1 2456284 2458365 D Pseudouridine synthase; catalyzes pseudouridylation at positions 35 and 56 in U2 snRNA, position 50 in 5S rRNA, position 13 in cytoplasmic tRNAs, and position 35 in pre-tRNA(Tyr); conserved in archaea, vertebrates, and some bacteria; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA,IMP] [PMID 12682021]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IMP] [PMID 18332121]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000455 - enzyme-directed rRNA pseudouridine synthesis [Evidence IMP] [PMID 18332121]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0031120 - snRNA pseudouridine synthesis [Evidence IDA,IMP] [PMID 12682021]; GO_process: GO:0031120 - snRNA pseudouridine synthesis [Evidence IMP] [PMID 14561887]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031119 - tRNA pseudouridine synthesis [Evidence IMP] [PMID 14561887]; pseudouridine synthase PUS7 2456284..2458365 Sugiyamaella lignohabitans 30037845 AWJ20_777 CDS HUT1 NC_031672.1 2458591 2459745 R Protein with a role in UDP-galactose transport to the Golgi lumen; has similarity to human UDP-galactose transporter UGTrel1, exhibits a genetic interaction with S. cerevisiae ERO1; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005459 - UDP-galactose transmembrane transporter activity [Evidence ISS] [PMID 11284010]; GO_process: GO:0015785 - UDP-galactose transport [Evidence IMP] [PMID 11284009]; GO_process: GO:0015786 - UDP-glucose transport [Evidence IGI,IMP] [PMID 18693752]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hut1p complement(2458591..2459745) Sugiyamaella lignohabitans 30037846 AWJ20_778 CDS PRE1 NC_031672.1 2460477 2461067 D Beta 4 subunit of the 20S proteasome; localizes to the nucleus throughout the cell cycle; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 15973433]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10419517]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IC] [PMID 9087403]; GO_function: GO:0061133 - endopeptidase activator activity [Evidence IMP] [PMID 8808631]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 4 2460477..2461067 Sugiyamaella lignohabitans 30037847 AWJ20_779 CDS MSS4 NC_031672.1 2466396 2468240 D Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2466396..2468240 Sugiyamaella lignohabitans 30037848 AWJ20_780 CDS PRP22 NC_031672.1 2469875 2473660 D DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase; associates with lariat intermediates before the second catalytic step of splicing; mediates ATP-dependent mRNA release from the spliceosome and unwinds RNA duplexes; required for proofreading the exon ligation reaction; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IMP] [PMID 9524130]; GO_component: GO:0071021 - U2-type post-spliceosomal complex [Evidence IMP] [PMID 12212850]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 9582286]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IDA] [PMID 12212850]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID 9524130]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IDA] [PMID 12212850]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 22408182]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000390 - spliceosomal complex disassembly [Evidence IMP] [PMID 9524130]; DEAH-box ATP-dependent RNA helicase PRP22 2469875..2473660 Sugiyamaella lignohabitans 30037850 AWJ20_781 CDS TPI1 NC_031672.1 2473989 2474708 R Triose phosphate isomerase, abundant glycolytic enzyme; mRNA half-life is regulated by iron availability; transcription is controlled by activators Reb1p, Gcr1p, and Rap1p through binding sites in the 5' non-coding region; inhibition of Tpi1p activity by PEP (phosphoenolpyruvate) stimulates redox metabolism in respiring cells; E104D mutation in human TPI causes a rare autosomal disease; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004807 - triose-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004807 - triose-phosphate isomerase activity [Evidence IDA] [PMID 236471]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 11329176]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA]; triose-phosphate isomerase TPI1 complement(2473989..2474708) Sugiyamaella lignohabitans 30037851 AWJ20_782 CDS DAM1 NC_031672.1 2475750 2476607 D Essential subunit of the Dam1 complex (aka DASH complex); cooperates with Duo1p to connect the DASH complex with the microtubules (MT); couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; Ipl1p target for regulating kinetochore-MT attachments; GO_component: GO:0042729 - DASH complex [Evidence IEA]; GO_component: GO:0042729 - DASH complex [Evidence IDA] [PMID 15640796]; GO_component: GO:0042729 - DASH complex [Evidence IDA] [PMID 15664196]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0072686 - mitotic spindle [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 15664196]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 16777964]; GO_function: GO:0051010 - microtubule plus-end binding [Evidence IDA] [PMID 17620411]; GO_function: GO:0051010 - microtubule plus-end binding [Evidence IDA] [PMID 20479465]; GO_process: GO:0008608 - attachment of spindle microtubules to kinetochore [Evidence IEA]; GO_process: GO:0008608 - attachment of spindle microtubules to kinetochore [Evidence IDA] [PMID 17620411]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0051987 - positive regulation of attachment of spindle microtubules to kinetochore [Evidence IDA] [PMID 20479465]; GO_process: GO:0051987 - positive regulation of attachment of spindle microtubules to kinetochore [Evidence IDA] [PMID 20479468]; GO_process: GO:0031116 - positive regulation of microtubule polymerization [Evidence IDA] [PMID 15664196]; Dam1p 2475750..2476607 Sugiyamaella lignohabitans 30037852 AWJ20_783 CDS HPM1 NC_031672.1 2476726 2477799 R AdoMet-dependent methyltransferase; involved in a novel 3-methylhistidine modification of ribosomal protein Rpl3p; seven beta-strand MTase family member; null mutant exhibits a weak vacuolar protein sorting defect and caspofungin resistance; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS] [PMID 12872006]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0018064 - protein-histidine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0018064 - protein-histidine N-methyltransferase activity [Evidence IMP] [PMID 20864530]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0042038 - peptidyl-histidine methylation, to form tele-methylhistidine [Evidence IMP] [PMID 20864530]; Hpm1p complement(2476726..2477799) Sugiyamaella lignohabitans 30037853 AWJ20_784 CDS COG5 NC_031672.1 2478051 2479199 D Component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IPI] [PMID 11703943]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20065092]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 11703943]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cog5p 2478051..2479199 Sugiyamaella lignohabitans 30037854 AWJ20_785 CDS AWJ20_785 NC_031672.1 2479628 2480464 D Uncharacterized protein YNL050C 2479628..2480464 Sugiyamaella lignohabitans 30037855 AWJ20_786 CDS MCH4 NC_031672.1 2480737 2482170 R Protein with similarity to mammalian monocarboxylate permeases; monocarboxylate permeases are involved in transport of monocarboxylic acids across the plasma membrane but mutant is not deficient in monocarboxylate transport; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 11536335]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0015293 - symporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11536335]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 11536335]; Mch4p complement(2480737..2482170) Sugiyamaella lignohabitans 30037856 AWJ20_787 CDS AWJ20_787 NC_031672.1 2484100 2485710 D uncharacterized protein 2484100..2485710 Sugiyamaella lignohabitans 30037857 AWJ20_788 CDS TPO1 NC_031672.1 2486509 2488134 D Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p 2486509..2488134 Sugiyamaella lignohabitans 30037858 AWJ20_789 CDS ARC35 NC_031672.1 2488772 2489710 D Subunit of the ARP2/3 complex; ARP2/3 is required for the motility and integrity of cortical actin patches; required for cortical localization of calmodulin; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA] [PMID 10377407]; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA] [PMID 9210376]; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IPI] [PMID 14554195]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 10377407]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI,IMP,IPI] [PMID 14554195]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IGI,IMP,IPI] [PMID 14554195]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence TAS] [PMID 11248049]; GO_process: GO:0006898 - receptor-mediated endocytosis [Evidence IMP] [PMID 7929582]; GO_process: GO:0030833 - regulation of actin filament polymerization [Evidence IEA]; Arc35p 2488772..2489710 Sugiyamaella lignohabitans 30037859 AWJ20_790 CDS MRPS12 NC_031672.1 2490026 2490727 R Mitochondrial protein; may interact with ribosomes based on co-purification experiments; similar to E. coli and human mitochondrial S12 ribosomal proteins; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence ISA] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence ISA] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence ISA] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; putative mitochondrial 37S ribosomal protein MRPS12 complement(2490026..2490727) Sugiyamaella lignohabitans 30037861 AWJ20_791 CDS PPG1 NC_031672.1 2491598 2492572 D Putative serine/threonine protein phosphatase; putative phosphatase of the type 2A-like phosphatase family, required for glycogen accumulation; interacts with Tap42p, which binds to and regulates other protein phosphatases; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence ISS] [PMID 7678255]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IMP] [PMID 7678255]; GO_process: GO:0006470 - protein dephosphorylation [Evidence ISS] [PMID 7678255]; putative serine/threonine-protein kinase PPG1 2491598..2492572 Sugiyamaella lignohabitans 30037862 AWJ20_792 CDS HWH4 NC_031672.1 2497380 2498201 D one of three or four genes related to conserved fungal hypothetical proteins (NCU00659.1, MG03673.4, AN4711.2); conserved fungal hypothetical protein 2497380..2498201 Sugiyamaella lignohabitans 30037863 AWJ20_793 CDS DNF2 NC_031672.1 2502062 2503144 D Aminophospholipid translocase (flippase); localizes primarily to the plasma membrane; contributes to endocytosis, protein transport and cell polarity; type 4 P-type ATPase; DNF2 has a paralog, DNF1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12221123]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12631737]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 12631737]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 17015438]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI,IMP] [PMID 12631737]; GO_process: GO:0007163 - establishment or maintenance of cell polarity [Evidence IGI] [PMID 15461661]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI,IMP] [PMID 12631737]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI,IMP] [PMID 17015438]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; aminophospholipid-translocating P4-type ATPase DNF2 2502062..2503144 Sugiyamaella lignohabitans 30037864 AWJ20_794 CDS DNF1 NC_031672.1 2503238 2507401 D Aminophospholipid translocase (flippase); localizes primarily to the plasma membrane; contributes to endocytosis, protein transport and cell polarity; type 4 P-type ATPase; DNF1 has a paralog, DNF2, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12221123]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12631737]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence ISS] [PMID 9224683]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI] [PMID 12631737]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 17015438]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI,IMP] [PMID 12631737]; GO_process: GO:0007163 - establishment or maintenance of cell polarity [Evidence IGI] [PMID 15461661]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI] [PMID 12631737]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI,IMP] [PMID 17015438]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; aminophospholipid-translocating P4-type ATPase DNF1 2503238..2507401 Sugiyamaella lignohabitans 30037865 AWJ20_795 CDS AWJ20_795 NC_031672.1 2505406 2505705 R uncharacterized protein complement(2505406..2505705) Sugiyamaella lignohabitans 30037866 AWJ20_796 CDS EKI1 NC_031672.1 2507650 2509026 R Ethanolamine kinase; primarily responsible for phosphatidylethanolamine synthesis via the CDP-ethanolamine pathway; exhibits some choline kinase activity, thus contributing to phosphatidylcholine synthesis via the CDP-choline pathway; EKI1 has a paralog, CKI1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004103 - choline kinase activity [Evidence IDA,IGI,ISS] [PMID 10329685]; GO_function: GO:0004305 - ethanolamine kinase activity [Evidence IEA]; GO_function: GO:0004305 - ethanolamine kinase activity [Evidence IDA,IGI,IMP,ISS] [PMID 10329685]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IGI,IMP] [PMID 10329685]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IEA]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IGI,IMP] [PMID 10329685]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; bifunctional choline kinase/ethanolamine kinase EKI1 complement(2507650..2509026) Sugiyamaella lignohabitans 30037867 AWJ20_797 CDS JJJ1 NC_031672.1 2511271 2512854 R Co-chaperone that stimulates the ATPase activity of Ssa1p; required for a late step of ribosome biogenesis; associated with the cytosolic large ribosomal subunit; contains a J-domain; mutation causes defects in fluid-phase endocytosis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 20368619]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 17242366]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 17242366]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IMP] [PMID 20368619]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 17242366]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 11378903]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 20368619]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 17242366]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IMP] [PMID 20368619]; Jjj1p complement(2511271..2512854) Sugiyamaella lignohabitans 30037868 AWJ20_798 CDS MOD5 NC_031672.1 2514204 2514941 D Delta 2-isopentenyl pyrophosphate:tRNA isopentenyl transferase; required for biosynthesis of the modified base isopentenyladenosine in mitochondrial and cytoplasmic tRNAs; gene is nuclear and encodes two isozymic forms; converts to a prion form, and prion conversion contributes to azole antifungal resistance by upregulating ergosterol biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9872948]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9872948]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9872948]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9872948]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]; GO_function: GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IDA] [PMID 18852462]; GO_function: GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IDA] [PMID 3031456]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 18852462]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 3031456]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Mod5p 2514204..2514941 Sugiyamaella lignohabitans 30037869 AWJ20_799 CDS AWJ20_799 NC_031672.1 2515000 2515329 R uncharacterized protein complement(2515000..2515329) Sugiyamaella lignohabitans 30037870 AWJ20_800 CDS RIM20 NC_031672.1 2515560 2517113 R Protein involved in proteolytic activation of Rim101p; part of response to alkaline pH; PalA/AIP1/Alix family member; interaction with the ESCRT-III subunit Snf7p suggests a relationship between pH response and multivesicular body formation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 11698381]; GO_process: GO:0016485 - protein processing [Evidence IDA,IGI,IMP] [PMID 11698381]; GO_process: GO:0006508 - proteolysis [Evidence IMP] [PMID 11698381]; GO_process: GO:0009268 - response to pH [Evidence IMP] [PMID 11698381]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 11698381]; Rim20p complement(2515560..2517113) Sugiyamaella lignohabitans 30037873 AWJ20_801 CDS APL4 NC_031672.1 2517657 2520212 R Gamma-adaptin; large subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; involved in vesicle mediated transport; GO_component: GO:0030121 - AP-1 adaptor complex [Evidence IPI,ISS] [PMID 10564262]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IPI,ISS] [PMID 10564262]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 17003107]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IPI,ISS] [PMID 10564262]; Apl4p complement(2517657..2520212) Sugiyamaella lignohabitans 30037874 AWJ20_802 CDS SEC24 NC_031672.1 2520801 2523704 R Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat; required for cargo selection during vesicle formation in ER to Golgi transport; homologous to Sfb3p; SEC24 has a paralog, SFB2, that arose from the whole genome duplication; GO_component: GO:0030127 - COPII vesicle coat [Evidence IEA]; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 8004676]; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence IMP] [PMID 12941277]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0090110 - cargo loading into COPII-coated vesicle [Evidence IDA] [PMID 12941277]; GO_process: GO:0090110 - cargo loading into COPII-coated vesicle [Evidence IDA] [PMID 14627716]; GO_process: GO:0090110 - cargo loading into COPII-coated vesicle [Evidence IDA] [PMID 15665868]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; COPII subunit SEC24 complement(2520801..2523704) Sugiyamaella lignohabitans 30037875 AWJ20_803 CDS SLM3 NC_031672.1 2528585 2529733 D tRNA-specific 2-thiouridylase; responsible for 2-thiolation of the wobble base of mitochondrial tRNAs; human ortholog is implicated in myoclonus epilepsy associated with ragged red fibers (MERRF); GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15944150]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO_function: GO:0004808 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity [Evidence ISS] [PMID 10592175]; GO_function: GO:0004808 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity [Evidence IMP] [PMID 15509579]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0070903 - mitochondrial tRNA thio-modification [Evidence IMP] [PMID 15509579]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Slm3p 2528585..2529733 Sugiyamaella lignohabitans 30037876 AWJ20_804 CDS AWJ20_804 NC_031672.1 2530135 2530587 R putative palmitoyltransferase ZDHHC20 complement(2530135..2530587) Sugiyamaella lignohabitans 30037877 AWJ20_806 CDS NDE1 NC_031672.1 2533750 2535537 D Mitochondrial external NADH dehydrogenase; type II NAD(P)H:quinone oxidoreductase that catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p provide cytosolic NADH to the mitochondrial respiratory chain; NDE1 has a paralog, NDE2, that arose from the whole genome duplication; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 9696750]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 9733747]; GO_function: GO:0003954 - NADH dehydrogenase activity [Evidence IDA,ISS] [PMID 9696750]; GO_function: GO:0003954 - NADH dehydrogenase activity [Evidence IDA,ISS] [PMID 9733747]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 12032156]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 16436509]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IMP] [PMID 9696750]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IMP] [PMID 9733747]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; NADH-ubiquinone reductase (H(+)-translocating) NDE1 2533750..2535537 Sugiyamaella lignohabitans 30037879 AWJ20_807 CDS MSS4 NC_031672.1 2536938 2538782 D Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2536938..2538782 Sugiyamaella lignohabitans 30037880 AWJ20_808 CDS AWJ20_808 NC_031672.1 2545284 2545655 D uncharacterized protein 2545284..2545655 Sugiyamaella lignohabitans 30037881 AWJ20_809 CDS KAP95 NC_031672.1 2547380 2550007 R Karyopherin beta; forms a complex with Srp1p/Kap60p; interacts with nucleoporins to mediate nuclear import of NLS-containing cargo proteins via the nuclear pore complex; regulates PC biosynthesis; GDP-to-GTP exchange factor for Gsp1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0005087 - Ran guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 19549784]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 7622450]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0051292 - nuclear pore complex assembly [Evidence IMP] [PMID 17182855]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IGI,IMP] [PMID 19141610]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 19141610]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 23131016]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 16929305]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0060188 - regulation of protein desumoylation [Evidence IMP] [PMID 17403926]; GO_process: GO:0006810 - transport [Evidence IEA]; Kap95p complement(2547380..2550007) Sugiyamaella lignohabitans 30037882 AWJ20_810 CDS PSO2 NC_031672.1 2551481 2553766 R Nuclease required for DNA single- and double-strand break repair; acts at a post-incision step in repair of breaks that result from interstrand cross-links produced by a variety of mono- and bi-functional psoralen derivatives; induced by UV-irradiation; forms nuclear foci upon DNA replication stress; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 1736091]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0008409 - 5'-3' exonuclease activity [Evidence IDA,IMP] [PMID 15590324]; GO_function: GO:0003684 - damaged DNA binding [Evidence IMP] [PMID 7035927]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 1736091]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence TAS] [PMID 12509272]; GO_process: GO:0036297 - interstrand cross-link repair [Evidence IGI,IMP] [PMID 22912599]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Pso2p complement(2551481..2553766) Sugiyamaella lignohabitans 30037884 AWJ20_811 CDS DAL5 NC_031672.1 2555341 2556969 R Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]; allantoate permease complement(2555341..2556969) Sugiyamaella lignohabitans 30037885 AWJ20_812 CDS AWJ20_812 NC_031672.1 2577587 2578291 D uncharacterized protein 2577587..2578291 Sugiyamaella lignohabitans 30037886 AWJ20_813 CDS ASG1 NC_031672.1 2578724 2580721 R Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Asg1p complement(2578724..2580721) Sugiyamaella lignohabitans 30037887 AWJ20_814 CDS AWJ20_814 NC_031672.1 2582668 2584248 R uncharacterized protein complement(join(2582668..2583981,2584210..2584248)) Sugiyamaella lignohabitans 30037888 AWJ20_815 CDS TAP42 NC_031672.1 2584531 2585649 D Essential protein involved in the TOR signaling pathway; physically associates with the protein phosphatase 2A and the SIT4 protein phosphatase catalytic subunits; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16874307]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 16874307]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 8756348]; GO_process: GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IGI,IMP] [PMID 19684113]; GO_process: GO:0009966 - regulation of signal transduction [Evidence IEA]; Tap42p 2584531..2585649 Sugiyamaella lignohabitans 30037889 AWJ20_816 CDS STE23 NC_031672.1 2585774 2588956 R Metalloprotease; involved in N-terminal processing of pro-a-factor to the mature form; expressed in both haploids and diploids; member of the insulin-degrading enzyme family; homolog Axl1p is also involved in processing of pro-a-factor; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 15944156]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA] [PMID 19750477]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence ISS] [PMID 7569998]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0007323 - peptide pheromone maturation [Evidence IGI] [PMID 7569998]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; Ste23p complement(2585774..2588956) Sugiyamaella lignohabitans 30037890 AWJ20_817 CDS MSS4 NC_031672.1 2591378 2593225 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(2591378..2593225) Sugiyamaella lignohabitans 30037891 AWJ20_818 CDS MSS4 NC_031672.1 2595027 2595932 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(2595027..2595932) Sugiyamaella lignohabitans 30037892 AWJ20_819 CDS RSP5 NC_031672.1 2605318 2607576 D E3 ubiquitin ligase of the NEDD4 family; involved in regulating many cellular processes including MVB sorting, heat shock response, transcription, endocytosis, and ribosome stability; human homolog is involved in Liddle syndrome; mutant tolerates aneuploidy; deubiquitinated by Ubp2p; autoubiquitinates and ubiquitinates Sec23p and Sna3p; required for efficient Golgi-to-ER trafficking in COPI mutants; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14657247]; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 14608372]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14657247]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15078904]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IDA] [PMID 14657247]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IDA] [PMID 15078904]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14608372]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0000151 - ubiquitin ligase complex [Evidence IPI] [PMID 9931424]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IDA] [PMID 15078904]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 19252184]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 21685393]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 9108033]; GO_process: GO:0034644 - cellular response to UV [Evidence IMP] [PMID 10490634]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IMP] [PMID 12399376]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP,IPI] [PMID 17182849]; GO_process: GO:0007005 - mitochondrion organization [Evidence IGI,IMP] [PMID 10366593]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 12654912]; GO_process: GO:0045723 - positive regulation of fatty acid biosynthetic process [Evidence IMP] [PMID 11007476]; GO_process: GO:0048260 - positive regulation of receptor-mediated endocytosis [Evidence IMP] [PMID 11179425]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11007476]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 15713680]; GO_process: GO:0051865 - protein autoubiquitination [Evidence IGI] [PMID 24069405]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IGI,IMP] [PMID 14761940]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IDA,IGI,IMP] [PMID 19176477]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IDA,IMP] [PMID 21685393]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA,IMP] [PMID 9108033]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 9614172]; GO_process: GO:0032956 - regulation of actin cytoskeleton organization [Evidence IGI] [PMID 15855235]; GO_process: GO:0010794 - regulation of dolichol biosynthetic process [Evidence IGI,IMP] [PMID 18771750]; GO_process: GO:0032443 - regulation of ergosterol biosynthetic process [Evidence IGI,IMP] [PMID 18771750]; GO_process: GO:0031384 - regulation of initiation of mating projection growth [Evidence IMP] [PMID 21685393]; GO_process: GO:0010793 - regulation of mRNA export from nucleus [Evidence IMP] [PMID 14608372]; GO_process: GO:0010793 - regulation of mRNA export from nucleus [Evidence IPI] [PMID 15713680]; GO_process: GO:0010796 - regulation of multivesicular body size [Evidence IMP] [PMID 17182850]; GO_process: GO:0006808 - regulation of nitrogen utilization [Evidence IGI] [PMID 15247235]; GO_process: GO:0019220 - regulation of phosphate metabolic process [Evidence IGI] [PMID 18165238]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP,IPI] [PMID 12867034]; GO_process: GO:2000232 - regulation of rRNA processing [Evidence IMP] [PMID 14608372]; GO_process: GO:2000203 - regulation of ribosomal large subunit export from nucleus [Evidence IMP] [PMID 14608372]; GO_process: GO:2000238 - regulation of tRNA export from nucleus [Evidence IMP] [PMID 14608372]; GO_process: GO:2000235 - regulation of tRNA processing [Evidence IMP] [PMID 14608372]; GO_process: GO:0010795 - regulation of ubiquinone biosynthetic process [Evidence IGI,IMP] [PMID 18771750]; GO_process: GO:0042493 - response to drug [Evidence IMP,IPI] [PMID 12163175]; GO_process: GO:0034517 - ribophagy [Evidence IGI] [PMID 18670191]; GO_process: GO:0070086 - ubiquitin-dependent endocytosis [Evidence IMP] [PMID 17344478]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IMP] [PMID 17344478]; NEDD4 family E3 ubiquitin-protein ligase 2605318..2607576 Sugiyamaella lignohabitans 30037893 AWJ20_820 CDS VBA1 NC_031672.1 2608570 2610360 D Permease of basic amino acids in the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 15572352]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015174 - basic amino acid transmembrane transporter activity [Evidence IDA,IMP] [PMID 15572352]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015802 - basic amino acid transport [Evidence IMP] [PMID 15572352]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vba1p 2608570..2610360 Sugiyamaella lignohabitans 30037895 AWJ20_821 CDS PRI1 NC_031672.1 2614469 2615704 D Subunit of DNA primase; DNA primase is required for DNA synthesis and double-strand break repair; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 22593576]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 3888995]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16103218]; GO_component: GO:1990077 - primosome complex [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003896 - DNA primase activity [Evidence IEA]; GO_function: GO:0003896 - DNA primase activity [Evidence IDA] [PMID 2644256]; GO_function: GO:0003896 - DNA primase activity [Evidence IDA] [PMID 3061469]; GO_function: GO:0003896 - DNA primase activity [Evidence IDA] [PMID 3888995]; GO_function: GO:0003896 - DNA primase activity [Evidence IGI,IMP] [PMID 8436268]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 20404922]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 2023935]; GO_process: GO:0006270 - DNA replication initiation [Evidence IC] [PMID 3888995]; GO_process: GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA,IEA]; GO_process: GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IDA] [PMID 2644256]; GO_process: GO:0006273 - lagging strand elongation [Evidence IC] [PMID 3888995]; DNA primase subunit PRI1 2614469..2615704 Sugiyamaella lignohabitans 30037896 AWJ20_822 CDS AWJ20_822 NC_031672.1 2616117 2616851 D uncharacterized protein 2616117..2616851 Sugiyamaella lignohabitans 30037897 AWJ20_823 CDS DBF20 NC_031672.1 2617019 2618725 R Ser/Thr kinase involved in late nuclear division; one of the mitotic exit network (MEN) proteins; necessary for the execution of cytokinesis; also plays a role in regulating the stability of SWI5 and CLB2 mRNAs; DBF20 has a paralog, DBF2, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12937277]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 12937277]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 8131744]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 17005296]; GO_process: GO:0010458 - exit from mitosis [Evidence IGI,ISS] [PMID 1916278]; GO_process: GO:0000281 - mitotic cytokinesis [Evidence IGI] [PMID 12937277]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 8131744]; GO_process: GO:0061013 - regulation of mRNA catabolic process [Evidence IMP] [PMID 22196726]; serine/threonine-protein kinase DBF20 complement(2617019..2618725) Sugiyamaella lignohabitans 30037898 AWJ20_824 CDS YRB30 NC_031672.1 2619560 2621254 D RanGTP-binding protein; inhibits RanGAP1 (Rna1p)-mediated GTP hydrolysis of RanGTP (Gsp1p); shares similarity to proteins in other fungi but not in higher eukaryotes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12578832]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP,ISS] [PMID 12578832]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0030695 - GTPase regulator activity [Evidence IDA,IPI] [PMID 12578832]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Yrb30p 2619560..2621254 Sugiyamaella lignohabitans 30037899 AWJ20_825 CDS HAA1 NC_031672.1 2621429 2622979 R Transcriptional activator involved in adaptation to weak acid stress; activates transcription of TPO2, YRO2, and other genes encoding membrane stress proteins; HAA1 has a paralog, CUP2, that arose from the whole genome duplication; relocalizes from cytoplasm to nucleus upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11504737]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0005507 - copper ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA] [PMID 21586585]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 11504737]; GO_process: GO:0036003 - positive regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IMP] [PMID 16176797]; GO_process: GO:0036003 - positive regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IMP] [PMID 16980434]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0001101 - response to acid [Evidence IMP] [PMID 16176797]; GO_process: GO:0001101 - response to acid [Evidence IMP] [PMID 16980434]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Haa1p complement(2621429..2622979) Sugiyamaella lignohabitans 30037900 AWJ20_826 CDS IRA1 NC_031672.1 2627063 2629345 R GTPase-activating protein; negatively regulates RAS by converting it from the GTP- to the GDP-bound inactive form, required for reducing cAMP levels under nutrient limiting conditions, mediates membrane association of adenylate cyclase; mutations cause catalase T deficiency, defective glycogen synthesis and defective trehalose accumulation; IRA1 has a paralog, IRA2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0031235 - intrinsic component of the cytoplasmic side of the plasma membrane [Evidence IBA]; GO_component: GO:0016020 - membrane [Evidence IMP,IPI] [PMID 1875942]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA,IEA]; GO_function: GO:0005099 - Ras GTPase activator activity [Evidence IMP] [PMID 2178777]; GO_process: GO:0046580 - negative regulation of Ras protein signal transduction [Evidence IMP] [PMID 15339905]; GO_process: GO:0030818 - negative regulation of cAMP biosynthetic process [Evidence IMP] [PMID 2540426]; GO_process: GO:0032320 - positive regulation of Ras GTPase activity [Evidence IMP] [PMID 2178777]; GO_process: GO:0045761 - regulation of adenylate cyclase activity [Evidence IMP] [PMID 1875942]; GO_process: GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Ira1p complement(2627063..2629345) Sugiyamaella lignohabitans 30037901 AWJ20_827 CDS AWJ20_827 NC_031672.1 2630762 2635456 D uncharacterized protein 2630762..2635456 Sugiyamaella lignohabitans 30037902 AWJ20_828 CDS BNA6 NC_031672.1 2635578 2636465 R Quinolinate phosphoribosyl transferase; required for the de novo biosynthesis of NAD from tryptophan via kynurenine; expression regulated by Hst1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA,IEA]; GO_function: GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IMP] [PMID 12062417]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IGI] [PMID 12062417]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA,IEA]; nicotinate-nucleotide diphosphorylase (carboxylating) complement(2635578..2636465) Sugiyamaella lignohabitans 30037903 AWJ20_829 CDS PUF3 NC_031672.1 2636728 2639622 R mRNA-binding protein PUF3 complement(2636728..2639622) Sugiyamaella lignohabitans 30037904 AWJ20_830 CDS TFC1 NC_031672.1 2640384 2641808 R transcription factor TFIIIC subunit TFC1 complement(2640384..2641808) Sugiyamaella lignohabitans 30037906 AWJ20_831 CDS SHP1 NC_031672.1 2642344 2643837 R protein phosphatase regulator SHP1 complement(join(2642344..2643289,2643624..2643628,2643718..2643837)) Sugiyamaella lignohabitans 30037907 AWJ20_832 CDS AWJ20_832 NC_031672.1 2644085 2645032 R uncharacterized protein complement(2644085..2645032) Sugiyamaella lignohabitans 30037908 AWJ20_833 CDS GOR1 NC_031672.1 2646233 2647237 R Glyoxylate reductase; null mutation results in increased biomass after diauxic shift; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IMP] [PMID 17173333]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence ISS] [PMID 9341119]; GO_process: GO:0009436 - glyoxylate catabolic process [Evidence IMP] [PMID 17173333]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence ISS] [PMID 9341119]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Gor1p complement(2646233..2647237) Sugiyamaella lignohabitans 30037909 AWJ20_834 CDS AWJ20_834 NC_031672.1 2647514 2650594 R uncharacterized protein complement(2647514..2650594) Sugiyamaella lignohabitans 30037910 AWJ20_835 CDS YET3 NC_031672.1 2651824 2652414 D hypothetical protein; YET3 null mutant decreases the level of secreted invertase; homolog of human BAP31 protein; protein abundance increases in response to DNA replication stress; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 20378542]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Yet3p 2651824..2652414 Sugiyamaella lignohabitans 30037911 AWJ20_836 CDS DUS3 NC_031672.1 2652610 2654508 R Dihydrouridine synthase; member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus4p; contains a consensus oleate response element (ORE) in its promoter region; forms nuclear foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence ISS] [PMID 12003496]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IMP] [PMID 14970222]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0002943 - tRNA dihydrouridine synthesis [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence ISS] [PMID 12003496]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 14970222]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Dus3p complement(2652610..2654508) Sugiyamaella lignohabitans 30037912 AWJ20_837 CDS RSM18 NC_031672.1 2655008 2655424 R some similarities with uniprot|P40033 Saccharomyces cerevisiae YER050C; mitochondrial 37S ribosomal protein RSM18 complement(2655008..2655424) Sugiyamaella lignohabitans 30037913 AWJ20_838 CDS AFG2 NC_031672.1 2655662 2658016 D ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex; is essential for pre-60S maturation and release of several preribosome maturation factors; releases Rlp24p from purified pre-60S particles in vitro; target of the ribosomal biosynthesis inhibitor diazaborine; may be involved in degradation of aberrant mRNAs; GO_component: GO:0005622 - intracellular [Evidence IDA] [PMID 12006565]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA,IMP] [PMID 17646390]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 12006565]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042493 - response to drug [Evidence IMP] [PMID 9341149]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 17646390]; AAA family ATPase AFG2 2655662..2658016 Sugiyamaella lignohabitans 30037914 AWJ20_839 CDS AWJ20_839 NC_031672.1 2663307 2665022 R Putative protein with similarity to asparagine synthetases; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YML096W is not an essential gene and partially overlaps the verified gene RAD10; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006529 - asparagine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; putative asparagine synthase complement(2663307..2665022) Sugiyamaella lignohabitans 30037915 AWJ20_840 CDS VPS9 NC_031672.1 2665402 2667426 D guanine nucleotide exchange factor VPS9 2665402..2667426 Sugiyamaella lignohabitans 30037917 AWJ20_841 CDS RET2 NC_031672.1 2670171 2671427 D Delta subunit of the coatomer complex (COPI); COPI coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER; GO_component: GO:0030126 - COPI vesicle coat [Evidence IEA]; GO_component: GO:0030126 - COPI vesicle coat [Evidence IMP,ISS] [PMID 8617224]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8617224]; GO_process: GO:0048313 - Golgi inheritance [Evidence IGI] [PMID 18595704]; GO_process: GO:0051645 - Golgi localization [Evidence IGI] [PMID 18595704]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8617224]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA,IEA]; Ret2p 2670171..2671427 Sugiyamaella lignohabitans 30037918 AWJ20_842 CDS PDE1 NC_031672.1 2671616 2672926 R Low-affinity cyclic AMP phosphodiesterase; controls glucose and intracellular acidification-induced cAMP signaling, target of the cAMP-protein kinase A (PKA) pathway; glucose induces transcription and inhibits translation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004115 - 3',5'-cyclic-AMP phosphodiesterase activity [Evidence IEA]; GO_function: GO:0004115 - 3',5'-cyclic-AMP phosphodiesterase activity [Evidence IGI,IMP] [PMID 2824992]; GO_function: GO:0004115 - 3',5'-cyclic-AMP phosphodiesterase activity [Evidence IMP] [PMID 6300049]; GO_function: GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0006198 - cAMP catabolic process [Evidence IEA]; GO_process: GO:0019933 - cAMP-mediated signaling [Evidence IMP] [PMID 9880329]; 3',5'-cyclic-nucleotide phosphodiesterase PDE1 complement(2671616..2672926) Sugiyamaella lignohabitans 30037919 AWJ20_843 CDS PRE4 NC_031672.1 2674174 2674554 R Beta 7 subunit of the 20S proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043248 - proteasome assembly [Evidence IGI] [PMID 17911101]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 7 complement(2674174..2674554) Sugiyamaella lignohabitans 30037920 AWJ20_844 CDS PRE4 NC_031672.1 2674872 2675153 R Beta 7 subunit of the 20S proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043248 - proteasome assembly [Evidence IGI] [PMID 17911101]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 7 complement(2674872..2675153) Sugiyamaella lignohabitans 30037921 AWJ20_845 CDS AWJ20_845 NC_031672.1 2675559 2677355 D uncharacterized protein 2675559..2677355 Sugiyamaella lignohabitans 30037922 AWJ20_846 CDS AWJ20_846 NC_031672.1 2677750 2679207 D uncharacterized protein 2677750..2679207 Sugiyamaella lignohabitans 30037923 AWJ20_847 CDS BNA7 NC_031672.1 2679549 2680385 D Formylkynurenine formamidase; involved in the de novo biosynthesis of NAD from tryptophan via kynurenine; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004061 - arylformamidase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004061 - arylformamidase activity [Evidence IDA] [PMID 18205391]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IDA] [PMID 18205391]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA,IEA]; GO_process: GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA,IEA]; arylformamidase 2679549..2680385 Sugiyamaella lignohabitans 30037924 AWJ20_848 CDS AWJ20_848 NC_031672.1 2682121 2682402 D uncharacterized protein 2682121..2682402 Sugiyamaella lignohabitans 30037925 AWJ20_849 CDS AWJ20_849 NC_031672.1 2682544 2683533 R uncharacterized protein complement(2682544..2683533) Sugiyamaella lignohabitans 30037926 AWJ20_851 CDS VAM6 NC_031672.1 2685788 2688640 D Vacuolar protein involved in vacuolar membrane fusion tethering; plays a critical role in the tethering steps of vacuolar membrane fusion by facilitating guanine nucleotide exchange on small guanosine triphosphatase Ypt7p; GO_component: GO:0030897 - HOPS complex [Evidence IPI] [PMID 10944212]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11853670]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9111041]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 11062257]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IDA] [PMID 16601699]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0035542 - regulation of SNARE complex assembly [Evidence IDA] [PMID 18385512]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IDA] [PMID 18385512]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA,IMP] [PMID 10944212]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 9111041]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 12730205]; Vam6p 2685788..2688640 Sugiyamaella lignohabitans 30037929 AWJ20_852 CDS UTP21 NC_031672.1 2688701 2691466 R Subunit of U3-containing 90S preribosome and SSU processome complexes; involved in production of 18S rRNA and assembly of small ribosomal subunit; synthetic defect with STI1 Hsp90 cochaperone; human homolog linked to glaucoma; Small Subunit processome is also known as SSU processome; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IGI] [PMID 19150991]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IC] [PMID 15590835]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp21p complement(2688701..2691466) Sugiyamaella lignohabitans 30037930 AWJ20_853 CDS VIP1 NC_031672.1 2692099 2695260 D Inositol hexakisphosphate and inositol heptakisphosphate kinase; inositol heptakisphosphate (IP7) production is important for phosphate signaling; involved in cortical actin cytoskeleton function, and invasive pseudohyphal growth analogous to S. pombe asp1; inositol hexakisphosphate is also known as IP6; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003993 - acid phosphatase activity [Evidence IEA]; GO_function: GO:0033857 - diphosphoinositol-pentakisphosphate kinase activity [Evidence IEA]; GO_function: GO:0000829 - inositol heptakisphosphate kinase activity [Evidence IDA] [PMID 17412958]; GO_function: GO:0052723 - inositol hexakisphosphate 1-kinase activity [Evidence IEA]; GO_function: GO:0052723 - inositol hexakisphosphate 1-kinase activity [Evidence IDA] [PMID 18981179]; GO_function: GO:0052724 - inositol hexakisphosphate 3-kinase activity [Evidence IEA]; GO_function: GO:0052724 - inositol hexakisphosphate 3-kinase activity [Evidence IDA] [PMID 18981179]; GO_function: GO:0000830 - inositol hexakisphosphate 4-kinase activity [Evidence IDA] [PMID 17412958]; GO_function: GO:0000830 - inositol hexakisphosphate 4-kinase activity [Evidence IDA] [PMID 18981179]; GO_function: GO:0000832 - inositol hexakisphosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0000831 - inositol hexakisphosphate 6-kinase activity [Evidence IDA] [PMID 17412958]; GO_function: GO:0000831 - inositol hexakisphosphate 6-kinase activity [Evidence IDA] [PMID 18981179]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0032958 - inositol phosphate biosynthetic process [Evidence IDA] [PMID 17412958]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; inositol polyphosphate kinase VIP1 2692099..2695260 Sugiyamaella lignohabitans 30037931 AWJ20_854 CDS PRS1 NC_031672.1 2695405 2696904 R 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase; synthesizes PRPP, which is required for nucleotide, histidine, and tryptophan biosynthesis; plays a key role in cell wall integrity (CWI) pathway; one of five related enzymes, which are active as heteromultimeric complexes; missense mutations in human homolog PRPS1 are associated with neuropathic Arts syndrome and Charcot-Marie Tooth (CMTX5) disease; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11101685]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA,IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IGI] [PMID 15280369]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IMP] [PMID 10212224]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IGI] [PMID 15280369]; GO_process: GO:0044249 - cellular biosynthetic process [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IPI] [PMID 15470112]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009156 - ribonucleoside monophosphate biosynthetic process [Evidence IEA]; ribose phosphate diphosphokinase subunit PRS1 complement(2695405..2696904) Sugiyamaella lignohabitans 30037932 AWJ20_855 CDS NUF2 NC_031672.1 2698246 2699292 D Component of the kinetochore-associated Ndc80 complex; involved in chromosome segregation, spindle checkpoint activity, and kinetochore clustering; evolutionarily conserved; other members include Ndc80p, Nuf2p, Spc24p, and Spc25p; GO_component: GO:0031262 - Ndc80 complex [Evidence IPI] [PMID 11179222]; GO_component: GO:0031262 - Ndc80 complex [Evidence IDA] [PMID 11266451]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA,IMP,IPI] [PMID 11179222]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 11511347]; GO_component: GO:0000780 - condensed nuclear chromosome, centromeric region [Evidence IDA,IGI,IPI] [PMID 11266451]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 11266451]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 8188751]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI] [PMID 11266451]; GO_process: GO:0007020 - microtubule nucleation [Evidence IPI] [PMID 9153752]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA,IEA]; Nuf2p 2698246..2699292 Sugiyamaella lignohabitans 30037933 AWJ20_856 CDS AWJ20_856 NC_031672.1 2701491 2703905 D uncharacterized protein 2701491..2703905 Sugiyamaella lignohabitans 30037934 AWJ20_857 CDS HST1 NC_031672.1 2704075 2705985 R histone deacetylase HST1 complement(2704075..2705985) Sugiyamaella lignohabitans 30037935 AWJ20_858 CDS PKC1 NC_031672.1 2708832 2709278 D Protein serine/threonine kinase; essential for cell wall remodeling during growth; localized to sites of polarized growth and the mother-daughter bud neck; homolog of the alpha, beta, and gamma isoforms of mammalian protein kinase C (PKC); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11545731]; GO_component: GO:0005856 - cytoskeleton [Evidence IDA] [PMID 15910746]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11545731]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0032165 - prospore septin filament array [Evidence IDA] [PMID 24390141]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 10893184]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004697 - protein kinase C activity [Evidence IEA]; GO_function: GO:0004697 - protein kinase C activity [Evidence IDA] [PMID 8207005]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence IGI] [PMID 12810699]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IMP] [PMID 21163942]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IMP] [PMID 7874200]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20385774]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 8207005]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IMP] [PMID 7874200]; GO_process: GO:0060211 - regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IMP] [PMID 21163942]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 7874200]; protein kinase C 2708832..2709278 Sugiyamaella lignohabitans 30037936 AWJ20_859 CDS PKC1 NC_031672.1 2709386 2712595 D Protein serine/threonine kinase; essential for cell wall remodeling during growth; localized to sites of polarized growth and the mother-daughter bud neck; homolog of the alpha, beta, and gamma isoforms of mammalian protein kinase C (PKC); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11545731]; GO_component: GO:0005856 - cytoskeleton [Evidence IDA] [PMID 15910746]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11545731]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0032165 - prospore septin filament array [Evidence IDA] [PMID 24390141]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 10893184]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004697 - protein kinase C activity [Evidence IEA]; GO_function: GO:0004697 - protein kinase C activity [Evidence IDA] [PMID 8207005]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence IGI] [PMID 12810699]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IMP] [PMID 21163942]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IMP] [PMID 7874200]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20385774]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 8207005]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IMP] [PMID 7874200]; GO_process: GO:0060211 - regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IMP] [PMID 21163942]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 7874200]; protein kinase C 2709386..2712595 Sugiyamaella lignohabitans 30037937 AWJ20_860 CDS YPS3 NC_031672.1 2713287 2714633 D Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 2713287..2714633 Sugiyamaella lignohabitans 30037939 AWJ20_861 CDS FAS1 NC_031672.1 2717777 2724034 D Beta subunit of fatty acid synthetase; complex catalyzes the synthesis of long-chain saturated fatty acids; contains acetyltransacylase, dehydratase, enoyl reductase, malonyl transacylase, and palmitoyl transacylase activities; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 6025308]; GO_component: GO:0005835 - fatty acid synthase complex [Evidence IEA]; GO_component: GO:0005835 - fatty acid synthase complex [Evidence IDA] [PMID 65153]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 17803462]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0019171 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity [Evidence IEA]; GO_function: GO:0019171 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0019171 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity [Evidence IDA] [PMID 374077]; GO_function: GO:0047451 - 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity [Evidence IEA]; GO_function: GO:0004313 - [acyl-carrier-protein] S-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004313 - [acyl-carrier-protein] S-acetyltransferase activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0004313 - [acyl-carrier-protein] S-acetyltransferase activity [Evidence IDA] [PMID 374077]; GO_function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]; GO_function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IDA] [PMID 365179]; GO_function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IDA] [PMID 374077]; GO_function: GO:0016297 - acyl-[acyl-carrier-protein] hydrolase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA,IEA]; GO_function: GO:0004319 - enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0004319 - enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity [Evidence IDA] [PMID 374077]; GO_function: GO:0004312 - fatty acid synthase activity [Evidence IEA]; GO_function: GO:0004312 - fatty acid synthase activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0004312 - fatty acid synthase activity [Evidence IMP] [PMID 65153]; GO_function: GO:0004321 - fatty-acyl-CoA synthase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016295 - myristoyl-[acyl-carrier-protein] hydrolase activity [Evidence IEA]; GO_function: GO:0004320 - oleoyl-[acyl-carrier-protein] hydrolase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016296 - palmitoyl-[acyl-carrier-protein] hydrolase activity [Evidence IEA]; GO_function: GO:0016409 - palmitoyltransferase activity [Evidence IMP] [PMID 1100391]; GO_function: GO:0016409 - palmitoyltransferase activity [Evidence IDA] [PMID 365179]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0042759 - long-chain fatty acid biosynthetic process [Evidence IMP] [PMID 1735446]; GO_process: GO:0042759 - long-chain fatty acid biosynthetic process [Evidence IMP] [PMID 4127627]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; tetrafunctional fatty acid synthase subunit FAS1 2717777..2724034 Sugiyamaella lignohabitans 30037940 AWJ20_862 CDS BER1 NC_031672.1 2724178 2724909 R Protein involved in microtubule-related processes; GFP-fusion protein localizes to the cytoplasm and is induced in response to the DNA-damaging agent MMS; YLR412W is not an essential gene; similar to Arabidopsis SRR1 gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007017 - microtubule-based process [Evidence IMP] [PMID 18064466]; Ber1p complement(2724178..2724909) Sugiyamaella lignohabitans 30037941 AWJ20_863 CDS HHT2 NC_031672.1 2725144 2725563 D Histone H3; core histone protein required for chromatin assembly, part of heterochromatin-mediated telomeric and HM silencing; one of two identical histone H3 proteins (see HHT2); regulated by acetylation, methylation, and phosphorylation; H3K14 acetylation plays an important role in the unfolding of strongly positioned nucleosomes during repair of UV damage; GO_component: GO:0043505 - centromere-specific nucleosome [Evidence IDA] [PMID 22693454]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0070911 - global genome nucleotide-excision repair [Evidence IMP] [PMID 21460225]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI] [PMID 19917722]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 16002464]; GO_process: GO:0043935 - sexual sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 20713519]; histone H3 2725144..2725563 Sugiyamaella lignohabitans 30037942 AWJ20_864 CDS PKP1 NC_031672.1 2725787 2727226 R protein kinase PKP1 complement(2725787..2727226) Sugiyamaella lignohabitans 30037943 AWJ20_865 CDS PEX1 NC_031672.1 2728462 2731725 R AAA-peroxin; heterodimerizes with AAA-peroxin Pex6p and participates in the recycling of peroxisomal signal receptor Pex5p from the peroxisomal membrane to the cystosol; induced by oleic acid and upregulated during anaerobiosis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA,IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 16911527]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IMP] [PMID 15634331]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 1825027]; GO_function: GO:0042623 - ATPase activity, coupled [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IMP,IPI] [PMID 15634331]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 16007078]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 16911527]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IEA,IEA]; GO_process: GO:0016562 - protein import into peroxisome matrix, receptor recycling [Evidence IDA,IGI,IMP] [PMID 16007078]; GO_process: GO:0006625 - protein targeting to peroxisome [Evidence IEA]; AAA family ATPase peroxin 1 complement(2728462..2731725) Sugiyamaella lignohabitans 30037944 AWJ20_866 CDS AWJ20_866 NC_031672.1 2733079 2734290 D Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein 2733079..2734290 Sugiyamaella lignohabitans 30037945 AWJ20_868 CDS MSS4 NC_031672.1 2737559 2739625 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(2737559..2739625) Sugiyamaella lignohabitans 30037947 AWJ20_869 CDS MSS4 NC_031672.1 2741011 2742597 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(2741011..2742597) Sugiyamaella lignohabitans 30037948 AWJ20_870 CDS RPO31 NC_031672.1 2748430 2752413 D RNA polymerase III largest subunit C160; part of core enzyme; similar to bacterial beta-prime subunit and to RPA190 and RPO21; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase III core subunit RPO31 2748430..2752413 Sugiyamaella lignohabitans 30037950 AWJ20_871 CDS AWJ20_871 NC_031672.1 2752795 2753688 R uncharacterized protein complement(2752795..2753688) Sugiyamaella lignohabitans 30037951 AWJ20_872 CDS HIR1 NC_031672.1 2759039 2762095 R Subunit of the HIR complex; HIR is a nucleosome assembly complex involved in regulation of histone gene transcription; contributes to nucleosome formation, heterochromatic gene silencing, and formation of functional kinetochores; GO_component: GO:0000417 - HIR complex [Evidence IDA,IPI] [PMID 16264190]; GO_component: GO:0000417 - HIR complex [Evidence IDA] [PMID 16303565]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 11782447]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 9504914]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 16264190]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0031491 - nucleosome binding [Evidence IMP] [PMID 16264190]; GO_function: GO:0003714 - transcription corepressor activity [Evidence IDA] [PMID 9001207]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16264190]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16303565]; GO_process: GO:0016568 - chromatin modification [Evidence IEA,IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9001207]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 16449659]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hir1p complement(2759039..2762095) Sugiyamaella lignohabitans 30037952 AWJ20_873 CDS CPS1 NC_031672.1 2763322 2765091 R Vacuolar carboxypeptidase S; expression is induced under low-nitrogen conditions; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 1569061]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IMP] [PMID 2026161]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IMP] [PMID 2026161]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IMP] [PMID 2026161]; Cps1p complement(2763322..2765091) Sugiyamaella lignohabitans 30037953 AWJ20_874 CDS MSS4 NC_031672.1 2769968 2771779 D Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2769968..2771779 Sugiyamaella lignohabitans 30037954 AWJ20_875 CDS YAK1 NC_031672.1 2774026 2775534 D serine/threonine protein kinase YAK1 2774026..2775534 Sugiyamaella lignohabitans 30037955 AWJ20_876 CDS MRPL51 NC_031672.1 2775750 2776106 R Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 54S ribosomal protein MRPL51 complement(2775750..2776106) Sugiyamaella lignohabitans 30037956 AWJ20_877 CDS AWJ20_877 NC_031672.1 2776984 2777634 D Uncharacterized protein C3orf60-like protein 2776984..2777634 Sugiyamaella lignohabitans 30037957 AWJ20_878 CDS AWJ20_878 NC_031672.1 2778074 2780404 D uncharacterized protein 2778074..2780404 Sugiyamaella lignohabitans 30037958 AWJ20_879 CDS ASM4 NC_031672.1 2780703 2782634 R FG-nucleoporin ASM4 complement(2780703..2782634) Sugiyamaella lignohabitans 30037959 AWJ20_880 CDS RPN6 NC_031672.1 2783198 2784541 D Essential, non-ATPase regulatory subunit of the 26S proteasome lid; required for the assembly and activity of the 26S proteasome; the human homolog (S9 protein) partially rescues Rpn6p depletion; protein abundance increases in response to DNA replication stress; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 12486135]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP] [PMID 12486135]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12486135]; proteasome regulatory particle lid subunit RPN6 2783198..2784541 Sugiyamaella lignohabitans 30037961 AWJ20_881 CDS AWJ20_881 NC_031672.1 2785250 2787031 D transcription factor, zf-fungal binuclear cluster type (predicted) 2785250..2787031 Sugiyamaella lignohabitans 30037962 AWJ20_882 CDS tam14 NC_031672.1 2788053 2789204 R top hit is XP_002839470.1 originated in Tuber melanosporum Mel28; conserved fungal protein; uncharacterized protein complement(2788053..2789204) Sugiyamaella lignohabitans 30037963 AWJ20_883 CDS MSS4 NC_031672.1 2791193 2793037 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(2791193..2793037) Sugiyamaella lignohabitans 30037964 AWJ20_885 CDS PDB1 NC_031672.1 2799541 2800722 R E1 beta subunit of the pyruvate dehydrogenase (PDH) complex; PDH is an evolutionarily conserved multi-protein complex found in mitochondria; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA] [PMID 2007123]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 8433986]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IMP] [PMID 8433986]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA] [PMID 7947791]; GO_process: GO:0006096 - glycolytic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; pyruvate dehydrogenase (acetyl-transferring) subunit E1 beta complement(2799541..2800722) Sugiyamaella lignohabitans 30037966 AWJ20_886 CDS RIM13 NC_031672.1 2802332 2804326 R Calpain-like cysteine protease; involved in proteolytic activation of Rim101p in response to alkaline pH; localizes to punctate structures in alkaline conditions and in vps4 mutant; has similarity to A. nidulans palB; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0004198 - calcium-dependent cysteine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0004197 - cysteine-type endopeptidase activity [Evidence IDA] [PMID 9928935]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0016485 - protein processing [Evidence IGI,IMP] [PMID 9928935]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Rim13p complement(2802332..2804326) Sugiyamaella lignohabitans 30037967 AWJ20_887 CDS RAM1 NC_031672.1 2805414 2806652 D Beta subunit of the CAAX farnesyltransferase (FTase); this complex prenylates the a-factor mating pheromone and Ras proteins; required for the membrane localization of Ras proteins and a-factor; homolog of the mammalian FTase beta subunit; GO_component: GO:0005965 - protein farnesyltransferase complex [Evidence IEA]; GO_component: GO:0005965 - protein farnesyltransferase complex [Evidence IDA] [PMID 8424764]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IEA]; GO_function: GO:0004660 - protein farnesyltransferase activity [Evidence IEA]; GO_function: GO:0004660 - protein farnesyltransferase activity [Evidence IDA] [PMID 9380709]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0018343 - protein farnesylation [Evidence IEA]; GO_process: GO:0018343 - protein farnesylation [Evidence IDA] [PMID 1763050]; GO_process: GO:0042127 - regulation of cell proliferation [Evidence IEA]; protein farnesyltransferase 2805414..2806652 Sugiyamaella lignohabitans 30037968 AWJ20_888 CDS btb2 NC_031672.1 2809099 2810691 D BTB/POZ domain protein Btb2 2809099..2810691 Sugiyamaella lignohabitans 30037969 AWJ20_889 CDS CWC24 NC_031672.1 2811392 2812390 R General splicing factor; required for stable U2 snRNP binding to primary transcripts; essential for the first step of splicing; component of the pre-catalytic spliceosome complex containing Cef1p; similar to S. pombe Cwf24p; GO_component: GO:0005684 - U2-type spliceosomal complex [Evidence IDA] [PMID 11884590]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17974558]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IPI] [PMID 23029180]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IMP] [PMID 22535589]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 23029180]; GO_process: GO:0034247 - snoRNA splicing [Evidence IMP] [PMID 17974558]; GO_process: GO:0034247 - snoRNA splicing [Evidence IMP] [PMID 23029180]; Cwc24p complement(2811392..2812390) Sugiyamaella lignohabitans 30037970 AWJ20_890 CDS RPT5 NC_031672.1 2812886 2814211 D ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; recruited to the GAL1-10 promoter region upon induction of transcription; similar to human TBP1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 9584156]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 19843524]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 9724628]; proteasome regulatory particle base subunit RPT5 2812886..2814211 Sugiyamaella lignohabitans 30037972 AWJ20_891 CDS AWJ20_891 NC_031672.1 2813653 2813985 R uncharacterized protein complement(2813653..2813985) Sugiyamaella lignohabitans 30037973 AWJ20_892 CDS CDC40 NC_031672.1 2814437 2816248 R Pre-mRNA splicing factor; important for catalytic step II of pre-mRNA splicing and plays a role in cell cycle progression; required for DNA synthesis during mitosis and meiosis; has WD repeats; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IDA] [PMID 9769104]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IGI,IMP] [PMID 10999606]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 17171376]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IGI,IMP] [PMID 10999606]; GO_process: GO:0000389 - mRNA 3'-splice site recognition [Evidence IGI] [PMID 10628969]; GO_process: GO:0000389 - mRNA 3'-splice site recognition [Evidence IGI] [PMID 15133121]; GO_process: GO:0000348 - mRNA branch site recognition [Evidence IGI] [PMID 15133121]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Cdc40p complement(2814437..2816248) Sugiyamaella lignohabitans 30037974 AWJ20_893 CDS BCP1 NC_031672.1 2816722 2817498 D Essential protein involved in nuclear export of Mss4p; Mss4p is a lipid kinase that generates phosphatidylinositol 4,5-biphosphate and plays a role in actin cytoskeleton organization and vesicular transport; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 12912920]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 12912920]; GO_process: GO:0006810 - transport [Evidence IEA]; Bcp1p 2816722..2817498 Sugiyamaella lignohabitans 30037975 AWJ20_894 CDS PEX30 NC_031672.1 2818562 2819944 D Peroxisomal integral membrane protein; involved in negative regulation of peroxisome number; partially functionally redundant with Pex31p; genetic interactions suggest action at a step downstream of steps mediated by Pex28p and Pex29p; PEX30 has a paralog, PEX31, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 14617799]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007031 - peroxisome organization [Evidence IMP] [PMID 14617799]; Pex30p 2818562..2819944 Sugiyamaella lignohabitans 30037976 AWJ20_895 CDS AWJ20_895 NC_031672.1 2824533 2825576 D uncharacterized protein 2824533..2825576 Sugiyamaella lignohabitans 30037977 AWJ20_896 CDS RFT1 NC_031672.1 2838359 2841094 D Membrane protein required for translocation of Man5GlcNac2-PP-Dol; required for translocation of Man5GlcNac2-PP-Dol from the cytoplasmic side to the lumenal side of the ER membrane but is not the flippase; mutation is suppressed by expression of human p53 protein; essential gene; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IGI,IMP] [PMID 11807558]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0034202 - glycolipid-translocating activity [Evidence IDA] [PMID 18597486]; GO_function: GO:0034202 - glycolipid-translocating activity [Evidence IDA] [PMID 18668045]; GO_function: GO:0034202 - glycolipid-translocating activity [Evidence IMP] [PMID 19494107]; GO_function: GO:0005319 - lipid transporter activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0034203 - glycolipid translocation [Evidence IGI,IMP] [PMID 11807558]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Rft1p 2838359..2841094 Sugiyamaella lignohabitans 30037978 AWJ20_897 CDS AWJ20_897 NC_031672.1 2841332 2842618 R uncharacterized protein complement(2841332..2842618) Sugiyamaella lignohabitans 30037979 AWJ20_898 CDS SSB2 NC_031672.1 2848612 2850462 D Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; functions with J-protein partner Zuo1p; may be involved in the folding of newly-synthesized polypeptide chains; member of the HSP70 family; SSB2 has a paralog, SSB1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 1394434]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 16413483]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9860955]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 9670014]; GO_process: GO:0051083 - 'de novo' cotranslational protein folding [Evidence IDA] [PMID 9670014]; GO_process: GO:0042149 - cellular response to glucose starvation [Evidence IGI] [PMID 19723765]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP,IPI] [PMID 1394434]; GO_process: GO:0006364 - rRNA processing [Evidence IGI] [PMID 20368619]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IMP] [PMID 15456889]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IGI] [PMID 20368619]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 16607023]; Hsp70 family ATPase SSB2 2848612..2850462 Sugiyamaella lignohabitans 30037980 AWJ20_899 CDS MSS4 NC_031672.1 2851931 2854021 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(2851931..2854021) Sugiyamaella lignohabitans 30037981 AWJ20_900 CDS RIM8 NC_031672.1 2854809 2857337 R Protein involved in proteolytic activation of Rim101p; part of response to alkaline pH; interacts with ESCRT-1 subunits Stp22p and Vps28p; essential for anaerobic growth; member of the arrestin-related trafficking adaptor family; GO_component: GO:0009898 - cytoplasmic side of plasma membrane [Evidence IDA] [PMID 20028738]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 9017390]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 9017390]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 9017390]; GO_process: GO:0070086 - ubiquitin-dependent endocytosis [Evidence ISA] [PMID 18976803]; Rim8p complement(2854809..2857337) Sugiyamaella lignohabitans 30037984 AWJ20_901 CDS AWJ20_901 NC_031672.1 2861671 2867016 D Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein 2861671..2867016 Sugiyamaella lignohabitans 30037985 AWJ20_902 CDS NUT1 NC_031672.1 2870982 2874485 R Component of the RNA polymerase II mediator complex; mediator is required for transcriptional activation and also has a role in basal transcription; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0016592 - mediator complex [Evidence IDA] [PMID 19368889]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9671481]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9671481]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19368889]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Nut1p complement(2870982..2874485) Sugiyamaella lignohabitans 30037986 AWJ20_903 CDS TMA19 NC_031672.1 2882107 2882619 D Protein that associates with ribosomes; homolog of translationally controlled tumor protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and relocates to the mitochondrial outer surface upon oxidative stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16806052]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16806052]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 16806052]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 16702403]; GO_process: GO:0006412 - translation [Evidence IEA]; Tma19p 2882107..2882619 Sugiyamaella lignohabitans 30037987 AWJ20_904 CDS TRM13 NC_031672.1 2882931 2884382 R 2'-O-methyltransferase; responsible for modification of tRNA at position 4; C-terminal domain has similarity to Rossmann-fold (RFM) superfamily of RNA methyltransferases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IDA,IMP] [PMID 17242307]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA,IMP] [PMID 17242307]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Trm13p complement(2882931..2884382) Sugiyamaella lignohabitans 30037988 AWJ20_906 CDS AWJ20_906 NC_031672.1 2887936 2889684 D uncharacterized protein 2887936..2889684 Sugiyamaella lignohabitans 30037990 AWJ20_908 CDS GTT1 NC_031672.1 2898304 2898984 D ER associated glutathione S-transferase capable of homodimerization; expression induced during the diauxic shift and throughout stationary phase; functional overlap with Gtt2p, Grx1p, and Grx2p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9792709]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IDA] [PMID 16709151]; GO_function: GO:0004364 - glutathione transferase activity [Evidence IEA]; GO_function: GO:0004364 - glutathione transferase activity [Evidence IDA,ISS] [PMID 9792709]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006749 - glutathione metabolic process [Evidence IDA] [PMID 9792709]; bifunctional glutathione transferase/peroxidase 2898304..2898984 Sugiyamaella lignohabitans 30037992 AWJ20_909 CDS GZF3 NC_031672.1 2901394 2903547 R GATA zinc finger protein; negatively regulates nitrogen catabolic gene expression by competing with Gat1p for GATA site binding; function requires a repressive carbon source; dimerizes with Dal80p and binds to Tor1p; GZF3 has a paralog, DAL80, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19380492]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 9171383]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA,IMP] [PMID 19380492]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0051457 - maintenance of protein location in nucleus [Evidence IPI] [PMID 19380492]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9171383]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IGI] [PMID 9106207]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IMP] [PMID 9171383]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IGI,IMP] [PMID 9171427]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Gzf3p complement(2901394..2903547) Sugiyamaella lignohabitans 30037993 AWJ20_910 CDS HTA2 NC_031672.1 2907509 2907910 R Histone H2A; core histone protein required for chromatin assembly and chromosome function; one of two nearly identical (see also HTA1) subtypes; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15781691]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; histone H2A complement(2907509..2907910) Sugiyamaella lignohabitans 30037995 AWJ20_911 CDS HTB1 NC_031672.1 2909231 2909644 D Histone H2B; core histone protein required for chromatin assembly and chromosome function; nearly identical to HTB1; Rad6p-Bre1p-Lge1p mediated ubiquitination regulates reassembly after DNA replication, transcriptional activation, meiotic DSB formation and H3 methylation; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; histone H2B 2909231..2909644 Sugiyamaella lignohabitans 30037996 AWJ20_912 CDS NPL6 NC_031672.1 2911188 2912651 D Component of the RSC chromatin remodeling complex; interacts with Rsc3p, Rsc30p, Ldb7p, and Htl1p to form a module important for a broad range of RSC functions; involved in nuclear protein import and maintenance of proper telomere length; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 14729968]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 12183366]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12482937]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IC] [PMID 14729968]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 2556404]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Npl6p 2911188..2912651 Sugiyamaella lignohabitans 30037997 AWJ20_913 CDS ZRG17 NC_031672.1 2913573 2915816 R Endoplasmic reticulum zinc transporter; part of a heterodimeric transporter with Msc2p that transfers zinc from the cytosol to the ER lumen; member of the cation diffusion facilitator family of efflux pumps; zinc-regulated directly through Zap1p; transcription induced under conditions of zinc deficiency; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15961382]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence ISS] [PMID 15961382]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IGI,IMP] [PMID 15961382]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IMP] [PMID 10978274]; GO_process: GO:0006829 - zinc ion transport [Evidence IGI,IMP] [PMID 15961382]; Zn(2+) transporter ZRG17 complement(2913573..2915816) Sugiyamaella lignohabitans 30037998 AWJ20_914 CDS TRP4 NC_031672.1 2916802 2917887 D Anthranilate phosphoribosyl transferase; transferase of the tryptophan biosynthetic pathway; catalyzes the phosphoribosylation of anthranilate; subject to the general control system of amino acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence ISS] [PMID 2428012]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA,IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 10790693]; anthranilate phosphoribosyltransferase 2916802..2917887 Sugiyamaella lignohabitans 30037999 AWJ20_915 CDS pcp1 NC_031672.1 2918266 2921190 D pericentrin Pcp1 2918266..2921190 Sugiyamaella lignohabitans 30038000 AWJ20_916 CDS AWJ20_916 NC_031672.1 2923461 2924072 R uncharacterized protein complement(2923461..2924072) Sugiyamaella lignohabitans 30038001 AWJ20_917 CDS GGA2 NC_031672.1 2925541 2927253 D Protein that regulates Arf1p, Arf2p to facilitate Golgi trafficking; binds phosphatidylinositol 4-phosphate, which plays a role in TGN localization; has homology to gamma-adaptin; GGA2 has a paralog, GGA1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 10747088]; GO_function: GO:0070273 - phosphatidylinositol-4-phosphate binding [Evidence IDA,IMP] [PMID 18287542]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 15039776]; GO_function: GO:0043130 - ubiquitin binding [Evidence IMP] [PMID 19574226]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IMP] [PMID 15039776]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP,IPI] [PMID 10747088]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0043328 - protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IMP] [PMID 15039776]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Gga2p 2925541..2927253 Sugiyamaella lignohabitans 30038002 AWJ20_918 CDS EAF1 NC_031672.1 2927684 2931613 R Component of the NuA4 histone acetyltransferase complex; acts as a platform for assembly of NuA4 subunits into the native complex; required for initiation of pre-meiotic DNA replication, likely due to its requirement for expression of IME1; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15353583]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IPI] [PMID 12672825]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0043623 - cellular protein complex assembly [Evidence IMP] [PMID 18212047]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IPI] [PMID 12672825]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Eaf1p complement(2927684..2931613) Sugiyamaella lignohabitans 30038003 AWJ20_919 CDS AWJ20_919 NC_031672.1 2932860 2934881 D uncharacterized protein 2932860..2934881 Sugiyamaella lignohabitans 30038004 AWJ20_920 CDS AWJ20_920 NC_031672.1 2936855 2937862 R uncharacterized protein complement(2936855..2937862) Sugiyamaella lignohabitans 30038006 AWJ20_921 CDS ARC1 NC_031672.1 2938854 2940276 D Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases; involved in tRNA delivery, stimulating catalysis, and ensuring localization; also binds quadruplex nucleic acids; protein abundance increases in response to DNA replication stress; methionyl-tRNA synthetase is Mes1p; glutamyl-tRNA synthetase is Gus1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11726524]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15710377]; GO_component: GO:0017102 - methionyl glutamyl tRNA synthetase complex [Evidence IMP,IPI] [PMID 9659920]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 11069915]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0000049 - tRNA binding [Evidence IEA,IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IMP,IPI] [PMID 11726524]; GO_process: GO:0051351 - positive regulation of ligase activity [Evidence IDA] [PMID 11069915]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IMP] [PMID 9659920]; Arc1p join(2938854..2938919,2938990..2940276) Sugiyamaella lignohabitans 30038007 AWJ20_922 CDS AWJ20_922 NC_031672.1 2941915 2944320 D uncharacterized protein 2941915..2944320 Sugiyamaella lignohabitans 30038008 AWJ20_923 CDS AWJ20_923 NC_031672.1 2944700 2946964 R uncharacterized protein complement(2944700..2946964) Sugiyamaella lignohabitans 30038009 AWJ20_924 CDS AWJ20_924 NC_031672.1 2947007 2948086 R uncharacterized protein complement(2947007..2948086) Sugiyamaella lignohabitans 30038010 AWJ20_925 CDS IAH1 NC_031672.1 2948747 2949451 R Isoamyl acetate-hydrolyzing esterase; required in balance with alcohol acetyltransferase to maintain optimal amounts of isoamyl acetate, which is particularly important in sake brewing; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IDA] [PMID 10855721]; GO_process: GO:0006083 - acetate metabolic process [Evidence IDA] [PMID 10855721]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; Iah1p complement(2948747..2949451) Sugiyamaella lignohabitans 30038011 AWJ20_926 CDS YPR1 NC_031672.1 2950019 2950909 D NADPH-dependent aldo-keto reductase; reduces multiple substrates including 2-methylbutyraldehyde and D,L-glyceraldehyde, expression is induced by osmotic and oxidative stress; functionally redundant with other aldo-keto reductases; protein abundance increases in response to DNA replication stress; YPR1 has a paralog, GCY1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 19016485]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA,IMP] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; trifunctional aldehyde reductase/carbonyl reductase (NADPH)/glucose 1-dehydrogenase (NADP(+)) YPR1 2950019..2950909 Sugiyamaella lignohabitans 30038012 AWJ20_928 CDS GAL2 NC_031672.1 2952253 2953833 R galactose permease GAL2 complement(2952253..2953833) Sugiyamaella lignohabitans 30038014 AWJ20_929 CDS ERT1 NC_031672.1 2961165 2962850 D Transcriptional regulator of nonfermentable carbon utilization; GFP-fusion protein localizes to cytoplasm, nucleus; null mutation affects periodicity of transcriptional and metabolic oscillation; plays role in restricting Ty1 transposition; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ert1p 2961165..2962850 Sugiyamaella lignohabitans 30038015 AWJ20_930 CDS ACT1 NC_031672.1 2964839 2965879 D Actin; structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 3967297]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 6365930]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 8163554]; GO_component: GO:0005884 - actin filament [Evidence IDA] [PMID 6217414]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 3967297]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 6365930]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 8163554]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 3967297]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 8163554]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 10911987]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IDA] [PMID 6217414]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IDA,IMP] [PMID 9732290]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA] [PMID 17118118]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence TAS] [PMID 10652251]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17287397]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 15024029]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IGI] [PMID 9864365]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence TAS] [PMID 10652251]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10911987]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence TAS] [PMID 10652251]; GO_process: GO:0009306 - protein secretion [Evidence IGI,IMP] [PMID 10793147]; GO_process: GO:0000011 - vacuole inheritance [Evidence IGI,IMP] [PMID 8978821]; GO_process: GO:0030050 - vesicle transport along actin filament [Evidence TAS] [PMID 10652251]; actin 2964839..2965879 Sugiyamaella lignohabitans 30038017 AWJ20_931 CDS MSS4 NC_031672.1 2966988 2968832 D Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 2966988..2968832 Sugiyamaella lignohabitans 30038018 AWJ20_933 CDS AWJ20_933 NC_031672.1 2974243 2975304 D uncharacterized protein 2974243..2975304 Sugiyamaella lignohabitans 30038020 AWJ20_934 CDS AWJ20_934 NC_031672.1 2976781 2977818 R uncharacterized protein complement(2976781..2977818) Sugiyamaella lignohabitans 30038021 AWJ20_935 CDS DID2 NC_031672.1 2980207 2980551 R Class E protein of the vacuolar protein-sorting (Vps) pathway; binds Vps4p and directs it to dissociate ESCRT-III complexes; forms a functional and physical complex with Ist1p; human ortholog may be altered in breast tumors; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11029042]; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 11029042]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 12194857]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP] [PMID 17130288]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 11029042]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Did2p complement(2980207..2980551) Sugiyamaella lignohabitans 30038022 AWJ20_936 CDS SKI2 NC_031672.1 2981742 2983688 R Ski complex component and putative RNA helicase; mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay; mutations in the human ortholog, SKIV2L, causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome; GO_component: GO:0055087 - Ski complex [Evidence IDA] [PMID 10744028]; GO_component: GO:0055087 - Ski complex [Evidence IDA,IPI] [PMID 18042677]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence ISS] [PMID 8321235]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0051607 - defense response to virus [Evidence IEA]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI] [PMID 12769863]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 10611222]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 9482746]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 11910110]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 17660569]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; SKI complex RNA helicase subunit SKI2 complement(2981742..2983688) Sugiyamaella lignohabitans 30038023 AWJ20_937 CDS SKI2 NC_031672.1 2984258 2985377 R Ski complex component and putative RNA helicase; mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay; mutations in the human ortholog, SKIV2L, causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome; GO_component: GO:0055087 - Ski complex [Evidence IDA] [PMID 10744028]; GO_component: GO:0055087 - Ski complex [Evidence IDA,IPI] [PMID 18042677]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence ISS] [PMID 8321235]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0051607 - defense response to virus [Evidence IEA]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI] [PMID 12769863]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 10611222]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 9482746]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 11910110]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 17660569]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; SKI complex RNA helicase subunit SKI2 complement(join(2984258..2984265,2984351..2985377)) Sugiyamaella lignohabitans 30038024 AWJ20_938 CDS IDP2 NC_031672.1 2988031 2989278 D Cytosolic NADP-specific isocitrate dehydrogenase; catalyzes oxidation of isocitrate to alpha-ketoglutarate; levels are elevated during growth on non-fermentable carbon sources and reduced during growth on glucose; IDP2 has a paralog, IDP3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15001388]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19854152]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+) activity [Evidence IDA] [PMID 15574419]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA]; GO_process: GO:0006102 - isocitrate metabolic process [Evidence IEA]; GO_process: GO:0006102 - isocitrate metabolic process [Evidence IGI,IMP] [PMID 15574419]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; isocitrate dehydrogenase (NADP(+)) IDP2 2988031..2989278 Sugiyamaella lignohabitans 30038025 AWJ20_939 CDS AWJ20_939 NC_031672.1 2990948 2992390 D uncharacterized protein 2990948..2992390 Sugiyamaella lignohabitans 30038026 AWJ20_940 CDS AWJ20_940 NC_031672.1 2992753 2993472 D uncharacterized protein 2992753..2993472 Sugiyamaella lignohabitans 30038028 AWJ20_941 CDS AWJ20_941 NC_031672.1 2993751 2995337 R uncharacterized protein complement(2993751..2995337) Sugiyamaella lignohabitans 30038029 AWJ20_942 CDS AWJ20_942 NC_031672.1 2999214 3000317 R uncharacterized protein complement(2999214..3000317) Sugiyamaella lignohabitans 30038030 AWJ20_943 CDS MIS1 NC_031672.1 3001764 3003494 D Mitochondrial C1-tetrahydrofolate synthase; involved in interconversion between different oxidation states of tetrahydrofolate (THF); provides activities of formyl-THF synthetase, methenyl-THF cyclohydrolase, and methylene-THF dehydrogenase; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 3528153]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA,IEA]; GO_function: GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004477 - methenyltetrahydrofolate cyclohydrolase activity [Evidence IEA]; GO_function: GO:0004477 - methenyltetrahydrofolate cyclohydrolase activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IDA] [PMID 3528153]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IMP] [PMID 10781559]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; trifunctional formate-tetrahydrofolate ligase 3001764..3003494 Sugiyamaella lignohabitans 30038031 AWJ20_944 CDS AWJ20_944 NC_031672.1 3003657 3003899 R uncharacterized protein complement(3003657..3003899) Sugiyamaella lignohabitans 30038032 AWJ20_945 CDS MIS1 NC_031672.1 3003832 3004617 D Mitochondrial C1-tetrahydrofolate synthase; involved in interconversion between different oxidation states of tetrahydrofolate (THF); provides activities of formyl-THF synthetase, methenyl-THF cyclohydrolase, and methylene-THF dehydrogenase; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 3528153]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA,IEA]; GO_function: GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004477 - methenyltetrahydrofolate cyclohydrolase activity [Evidence IEA]; GO_function: GO:0004477 - methenyltetrahydrofolate cyclohydrolase activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IDA] [PMID 3528153]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IMP] [PMID 10781559]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; trifunctional formate-tetrahydrofolate ligase 3003832..3004617 Sugiyamaella lignohabitans 30038033 AWJ20_947 CDS MDY2 NC_031672.1 3005649 3006149 D Protein involved in inserting tail-anchored proteins into ER membranes; forms a complex with Get4p; required for efficient mating; involved in shmoo formation and nuclear migration in the pre-zygote; associates with ribosomes; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23285234]; GO_component: GO:0005829 - cytosol [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16390866]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23285234]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000753 - cell morphogenesis involved in conjugation with cellular fusion [Evidence IMP] [PMID 16390866]; GO_process: GO:0006620 - posttranslational protein targeting to membrane [Evidence IDA] [PMID 20850366]; GO_process: GO:0045048 - protein insertion into ER membrane [Evidence IGI] [PMID 19325107]; Mdy2p 3005649..3006149 Sugiyamaella lignohabitans 30038035 AWJ20_948 CDS MRPL3 NC_031672.1 3006345 3007490 R Mitochondrial ribosomal protein of the large subunit; located in close proximity to the polypeptide exit channel of the ribosome; mutations in human homolog MRPL44 cause childhood cardiomyopathy; human MRPL44 deficiency results in inefficient assembly of the mitochondrial ribosome, and in tissue-specific respiratory chain deficiency, manifesting as either Complex I+Complex IV or Complex IV deficiency, depending on a cell type; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IEA]; mitochondrial 54S ribosomal protein YmL3 complement(3006345..3007490) Sugiyamaella lignohabitans 30038036 AWJ20_949 CDS STU1 NC_031672.1 3009002 3013255 R Component of the mitotic spindle; binds to interpolar microtubules via its association with beta-tubulin (Tub2p); required for interpolar microtubules to provide an outward force on the spindle poles; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007020 - microtubule nucleation [Evidence IPI] [PMID 9153752]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; Stu1p complement(3009002..3013255) Sugiyamaella lignohabitans 30038037 AWJ20_952 CDS POB3 NC_031672.1 3015545 3017275 R Subunit of the heterodimeric FACT complex (Spt16p-Pob3p); FACT associates with chromatin via interaction with Nhp6Ap and Nhp6Bp, and reorganizes nucleosomes to facilitate access to DNA by RNA and DNA polymerases; protein abundance increases in response to DNA replication stress; GO_component: GO:0035101 - FACT complex [Evidence IGI,IPI] [PMID 11432837]; GO_component: GO:0035101 - FACT complex [Evidence IDA] [PMID 9705338]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 10413469]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10413469]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10413469]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 18089575]; GO_function: GO:0031491 - nucleosome binding [Evidence IDA] [PMID 11432837]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0034724 - DNA replication-independent nucleosome organization [Evidence IDA] [PMID 15082784]; GO_process: GO:0034724 - DNA replication-independent nucleosome organization [Evidence IDA] [PMID 19683499]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IGI,IMP] [PMID 10924459]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IPI] [PMID 9199353]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA] [PMID 15987999]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IC] [PMID 19683500]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; FACT complex subunit POB3 complement(3015545..3017275) Sugiyamaella lignohabitans 30038041 AWJ20_953 CDS AST1 NC_031672.1 3017785 3018855 R Lipid raft associated protein; interacts with the plasma membrane ATPase Pma1p and has a role in its targeting to the plasma membrane by influencing its incorporation into lipid rafts; sometimes classified in the medium-chain dehydrogenase/reductases (MDRs) superfamily; AST1 has a paralog, AST2, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11739806]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 11739806]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 11739806]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11739806]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IGI] [PMID 7822420]; GO_process: GO:0032596 - protein transport into membrane raft [Evidence IMP,IPI] [PMID 11739806]; Ast1p complement(3017785..3018855) Sugiyamaella lignohabitans 30038042 AWJ20_954 CDS APS2 NC_031672.1 3020414 3020821 R Small subunit of the clathrin-associated adaptor complex AP-2; AP-2 is involved in protein sorting at the plasma membrane; related to the sigma subunit of the mammalian plasma membrane clathrin-associated protein (AP-2) complex; GO_component: GO:0030122 - AP-2 adaptor complex [Evidence IDA,IPI] [PMID 10564262]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 8157009]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IC] [PMID 10564262]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Aps2p complement(3020414..3020821) Sugiyamaella lignohabitans 30038043 AWJ20_955 CDS DUR3 NC_031672.1 3024443 3026230 R Plasma membrane transporter for both urea and polyamines; expression is highly sensitive to nitrogen catabolite repression and induced by allophanate, the last intermediate of the allantoin degradative pathway; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17218313]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 8335627]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IDA,IMP] [PMID 17218313]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 17218313]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0015204 - urea transmembrane transporter activity [Evidence IMP,ISS] [PMID 8335627]; GO_process: GO:0015847 - putrescine transport [Evidence IDA,IMP] [PMID 17218313]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 17218313]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IEP] [PMID 8335627]; GO_process: GO:0015840 - urea transport [Evidence IMP,ISS] [PMID 8335627]; Dur3p complement(3024443..3026230) Sugiyamaella lignohabitans 30038044 AWJ20_956 CDS DUR3 NC_031672.1 3026261 3026593 R Plasma membrane transporter for both urea and polyamines; expression is highly sensitive to nitrogen catabolite repression and induced by allophanate, the last intermediate of the allantoin degradative pathway; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17218313]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 8335627]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IDA,IMP] [PMID 17218313]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 17218313]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0015204 - urea transmembrane transporter activity [Evidence IMP,ISS] [PMID 8335627]; GO_process: GO:0015847 - putrescine transport [Evidence IDA,IMP] [PMID 17218313]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 17218313]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IEP] [PMID 8335627]; GO_process: GO:0015840 - urea transport [Evidence IMP,ISS] [PMID 8335627]; Dur3p complement(3026261..3026593) Sugiyamaella lignohabitans 30038045 AWJ20_957 CDS AWJ20_957 NC_031672.1 3028370 3029215 D uncharacterized protein 3028370..3029215 Sugiyamaella lignohabitans 30038046 AWJ20_958 CDS AWJ20_958 NC_031672.1 3029612 3030796 R uncharacterized protein complement(3029612..3030796) Sugiyamaella lignohabitans 30038047 AWJ20_959 CDS VCX1 NC_031672.1 3035354 3036529 D Vacuolar membrane antiporter with Ca2+/H+ and K+/H+ exchange activity; involved in control of cytosolic Ca2+ and K+ concentrations; has similarity to sodium/calcium exchangers, including the bovine Na+/Ca2+,K+ antiporter; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 8628289]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20709757]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015369 - calcium:proton antiporter activity [Evidence IEA]; GO_function: GO:0015369 - calcium:proton antiporter activity [Evidence IMP] [PMID 20709757]; GO_function: GO:0015369 - calcium:proton antiporter activity [Evidence IDA,IMP] [PMID 8628289]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0015386 - potassium:proton antiporter activity [Evidence IMP] [PMID 20709757]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA,IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IDA,IMP] [PMID 8628289]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IMP] [PMID 8628289]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006828 - manganese ion transport [Evidence IDA] [PMID 15522090]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA,IMP] [PMID 8628289]; GO_process: GO:0006810 - transport [Evidence IEA]; Vcx1p 3035354..3036529 Sugiyamaella lignohabitans 30038048 AWJ20_960 CDS AWJ20_960 NC_031672.1 3035977 3036261 R uncharacterized protein complement(3035977..3036261) Sugiyamaella lignohabitans 30038050 AWJ20_961 CDS gms1 NC_031672.1 3038557 3039735 D UDP-galactose transporter Gms1 3038557..3039735 Sugiyamaella lignohabitans 30038051 AWJ20_962 CDS PCL1 NC_031672.1 3047266 3048381 D Cyclin, interacts with cyclin-dependent kinase Pho85p; member of the Pcl1,2-like subfamily, involved in the regulation of polarized growth and morphogenesis and progression through the cell cycle; is ubiquitinated by Dma1p; phosphorylation by Pho85p targets it for degradation; localizes to sites of polarized cell growth; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 7973730]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 14688790]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14688790]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IDA] [PMID 7973730]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0016239 - positive regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IEA]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 7973730]; GO_process: GO:0032878 - regulation of establishment or maintenance of cell polarity [Evidence IGI,IPI] [PMID 17853895]; GO_process: GO:0031106 - septin ring organization [Evidence IGI] [PMID 19458192]; Pcl1p 3047266..3048381 Sugiyamaella lignohabitans 30038052 AWJ20_963 CDS MTG2 NC_031672.1 3048644 3050209 R Putative GTPase; member of the Obg family; peripheral protein of the mitochondrial inner membrane that associates with the large ribosomal subunit; required for mitochondrial translation, possibly via a role in ribosome assembly; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 15591131]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 15591131]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 15591131]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 15591131]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 15591131]; GO_process: GO:0006412 - translation [Evidence IEA]; putative GTPase MTG2 complement(3048644..3050209) Sugiyamaella lignohabitans 30038053 AWJ20_964 CDS ARP8 NC_031672.1 3050738 3053476 D Nuclear actin-related protein involved in chromatin remodeling; component of chromatin-remodeling enzyme complexes; has mRNA binding activity; GO_component: GO:0031011 - Ino80 complex [Evidence IEA]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11011149]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 17320816]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 12887900]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 23644470]; GO_process: GO:0006312 - mitotic recombination [Evidence IMP] [PMID 17320816]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Arp8p 3050738..3053476 Sugiyamaella lignohabitans 30038054 AWJ20_965 CDS AWJ20_965 NC_031672.1 3053660 3054538 R DNAJ domain protein, DNAJC9 family complement(3053660..3054538) Sugiyamaella lignohabitans 30038055 AWJ20_966 CDS POL90 NC_031672.1 3055228 3058125 R polyprotein of non-LTR retrotransposon Zorro 1 and repeat region-related DNA; polyprotein of L1-like non-LTR retrotransposon Zorro 1 complement(3055228..3058125) Sugiyamaella lignohabitans 30038056 AWJ20_968 CDS POL31 NC_031672.1 3061678 3062751 D Subunit of DNA polymerase delta (polymerase III); essential for cell viability; involved in DNA replication and DNA repair; forms a complex with Rev3p, Rev7p and Pol32p; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0043625 - delta DNA polymerase complex [Evidence TAS] [PMID 9745046]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 18635534]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence TAS] [PMID 9745046]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008310 - single-stranded DNA 3'-5' exodeoxyribonuclease activity [Evidence TAS] [PMID 9745046]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0043137 - DNA replication, removal of RNA primer [Evidence IDA] [PMID 16837458]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IDA] [PMID 17429354]; GO_process: GO:0006284 - base-excision repair [Evidence TAS] [PMID 9745046]; GO_process: GO:0006273 - lagging strand elongation [Evidence TAS] [PMID 9745046]; GO_process: GO:0006272 - leading strand elongation [Evidence TAS] [PMID 9745046]; GO_process: GO:0006298 - mismatch repair [Evidence TAS] [PMID 10072354]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence TAS] [PMID 9745046]; GO_process: GO:0006301 - postreplication repair [Evidence TAS] [PMID 9745046]; Pol31p 3061678..3062751 Sugiyamaella lignohabitans 30038058 AWJ20_969 CDS MSM1 NC_031672.1 3062894 3064441 R Mitochondrial methionyl-tRNA synthetase (MetRS); functions as a monomer in mitochondrial protein synthesis; functions similarly to cytoplasmic MetRS although the cytoplasmic form contains a zinc-binding domain not found in Msm1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 2645139]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004825 - methionine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004825 - methionine-tRNA ligase activity [Evidence IMP,ISS] [PMID 2645139]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006431 - methionyl-tRNA aminoacylation [Evidence IMP,ISS] [PMID 2645139]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; methionine--tRNA ligase MSM1 complement(3062894..3064441) Sugiyamaella lignohabitans 30038059 AWJ20_970 CDS AWJ20_970 NC_031672.1 3068156 3068524 R uncharacterized protein complement(3068156..3068524) Sugiyamaella lignohabitans 30038061 AWJ20_971 CDS AWJ20_971 NC_031672.1 3069427 3070287 D uncharacterized protein 3069427..3070287 Sugiyamaella lignohabitans 30038062 AWJ20_972 CDS BRE2 NC_031672.1 3070574 3072097 R Subunit of COMPASS (Set1C) complex; COMPASS methylates Lys4 of histone H3 and functions in silencing at telomeres; has a C-terminal Sdc1 Dpy-30 Interaction (SDI) domain that mediates binding to Sdc1p; similar to trithorax-group protein ASH2L; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11687631]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11742990]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11752412]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA] [PMID 11742990]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IMP] [PMID 11752412]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA,IMP] [PMID 11805083]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11687631]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11805083]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11742990]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA,IMP] [PMID 11752412]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA,IMP] [PMID 11805083]; GO_process: GO:0080182 - histone H3-K4 trimethylation [Evidence IMP] [PMID 16921172]; GO_process: GO:0080182 - histone H3-K4 trimethylation [Evidence IMP] [PMID 16980427]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 11742990]; Bre2p complement(3070574..3072097) Sugiyamaella lignohabitans 30038063 AWJ20_973 CDS MSB2 NC_031672.1 3077586 3081839 D Mucin family member involved in signaling; functions in the Cdc42p- and MAP kinase-dependent filamentous growth signaling pathway; is processed into secreted and cell-associated forms by the aspartyl protease, Yps1p; also functions as an osmosensor in parallel to the Sho1p-mediated pathway; potential Cdc28p substrate; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IMP,ISS] [PMID 12052881]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 15256499]; GO_function: GO:0005034 - osmosensor activity [Evidence IMP] [PMID 12052881]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 19439450]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IGI] [PMID 2690082]; GO_process: GO:0006972 - hyperosmotic response [Evidence IGI] [PMID 17627274]; GO_process: GO:0007232 - osmosensory signaling pathway via Sho1 osmosensor [Evidence IGI] [PMID 17627274]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 12052881]; GO_process: GO:0001402 - signal transduction involved in filamentous growth [Evidence IEP,IGI,IMP] [PMID 15256499]; Msb2p join(3077586..3078759,3078826..3081839) Sugiyamaella lignohabitans 30038064 AWJ20_974 CDS STR3 NC_031672.1 3082651 3084030 D Peroxisomal cystathionine beta-lyase; converts cystathionine into homocysteine; may be redox regulated by Gto1p; involved in the release of the aromatic thiol 3-mercaptohexanol during wine fermentation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 11565790]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004121 - cystathionine beta-lyase activity [Evidence IEA,IEA]; GO_function: GO:0004121 - cystathionine beta-lyase activity [Evidence IMP,ISS] [PMID 10821189]; GO_function: GO:0004121 - cystathionine beta-lyase activity [Evidence IDA] [PMID 21478306]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0071266 - 'de novo' L-methionine biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 10821189]; GO_process: GO:0019346 - transsulfuration [Evidence IMP] [PMID 10821189]; cystathionine beta-lyase STR3 3082651..3084030 Sugiyamaella lignohabitans 30038065 AWJ20_975 CDS GLO3 NC_031672.1 3084469 3086007 R ADP-ribosylation factor GTPase activating protein (ARF GAP); involved in ER-Golgi transport; shares functional similarity with Gcs1p; GO_component: GO:0030126 - COPI vesicle coat [Evidence IPI] [PMID 15254269]; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 15254269]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005793 - endoplasmic reticulum-Golgi intermediate compartment [Evidence IPI] [PMID 9927415]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IEA]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IDA] [PMID 9927415]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0048205 - COPI coating of Golgi vesicle [Evidence IDA,IMP] [PMID 15254269]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 9927415]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA,IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0032312 - regulation of ARF GTPase activity [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IDA,IGI,IMP] [PMID 9927415]; GO_process: GO:0006810 - transport [Evidence IEA]; Glo3p complement(3084469..3086007) Sugiyamaella lignohabitans 30038066 AWJ20_976 CDS AWJ20_976 NC_031672.1 3086826 3087560 D subunit of NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative 3086826..3087560 Sugiyamaella lignohabitans 30038067 AWJ20_977 CDS MRP49 NC_031672.1 3094193 3094591 R Mitochondrial ribosomal protein of the large subunit; not essential for mitochondrial translation; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 1544898]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 1544898]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 1544898]; mitochondrial 54S ribosomal protein MRP49 complement(3094193..3094591) Sugiyamaella lignohabitans 30038068 AWJ20_978 CDS PNP1 NC_031672.1 3095133 3096083 D Purine nucleoside phosphorylase; specifically metabolizes inosine and guanosine nucleosides; involved in the nicotinamide riboside salvage pathway; GO_component: GO:0005622 - intracellular [Evidence IC] [PMID 11466296]; GO_component: GO:0005622 - intracellular [Evidence IC] [PMID 17482543]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0047724 - inosine nucleosidase activity [Evidence IDA] [PMID 19001417]; GO_function: GO:0070635 - nicotinamide riboside hydrolase activity [Evidence IDA] [PMID 19001417]; GO_function: GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA,IEA]; GO_function: GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IDA,IMP,ISS] [PMID 11466296]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IEA]; GO_process: GO:0034356 - NAD biosynthesis via nicotinamide riboside salvage pathway [Evidence IGI] [PMID 19001417]; GO_process: GO:0046115 - guanosine catabolic process [Evidence IMP] [PMID 11466296]; GO_process: GO:0046115 - guanosine catabolic process [Evidence IMP] [PMID 23670538]; GO_process: GO:0006148 - inosine catabolic process [Evidence IMP] [PMID 11466296]; GO_process: GO:0006148 - inosine catabolic process [Evidence IMP] [PMID 23670538]; GO_process: GO:0019358 - nicotinate nucleotide salvage [Evidence IGI] [PMID 17482543]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0009116 - nucleoside metabolic process [Evidence IEA]; purine-nucleoside phosphorylase 3095133..3096083 Sugiyamaella lignohabitans 30038069 AWJ20_979 CDS SEC13 NC_031672.1 3096411 3097358 R Structural component of 3 distinct complexes; subunit of Nup84 nuclear pore sub-complex (NPC), COPII vesicle coat, and Seh1-associated (SEA) complex; COPII vesicle coat is required for ER to Golgi transport; the Nup84 subcomplex contributes to nucleocytoplasmic transport, NPC biogenesis and processes that may require localization of chromosomes at the nuclear periphery, including transcription; homologous to human SEC13; abundance increases under DNA replication stress; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 11717432]; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 8004676]; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IEA]; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 12671686]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 17604721]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 22300850]; GO_process: GO:0090114 - COPII-coated vesicle budding [Evidence IMP] [PMID 8223424]; GO_process: GO:0090114 - COPII-coated vesicle budding [Evidence IMP] [PMID 8432727]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12538638]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 10747086]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IDA] [PMID 11389436]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA] [PMID 15817685]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GTPase-activating protein SEC13 complement(3096411..3097358) Sugiyamaella lignohabitans 30038070 AWJ20_980 CDS TFB2 NC_031672.1 3097969 3099462 D Subunit of TFIIH and nucleotide excision repair factor 3 complexes; involved in transcription initiation, required for nucleotide excision repair, similar to 52 kDa subunit of human TFIIH; GO_component: GO:0000439 - core TFIIH complex [Evidence IEA]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 14500720]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IPI] [PMID 10681587]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 19897425]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 9235928]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; TFIIH/NER complex subunit TFB2 3097969..3099462 Sugiyamaella lignohabitans 30038072 AWJ20_981 CDS MRH4 NC_031672.1 3099902 3101566 R Mitochondrial ATP-dependent RNA helicase of the DEAD-box family; required for assembly of the large subunit of mitochondrial ribosomes; binds to the large subunit rRNA, 21S_rRNA; localizes to the matrix face of the mitochondrial inner membrane and associates with the large subunit precursor and with mature ribosomes; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 24206665]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 24206665]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 12702275]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IMP] [PMID 24206665]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 9046088]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:1990400 - mitochondrial ribosomal large subunit rRNA binding [Evidence IDA] [PMID 24206665]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0016070 - RNA metabolic process [Evidence IMP] [PMID 12702275]; GO_process: GO:1902775 - mitochondrial large ribosomal subunit assembly [Evidence IMP] [PMID 24206665]; Mrh4p complement(3099902..3101566) Sugiyamaella lignohabitans 30038073 AWJ20_982 CDS SRP72 NC_031672.1 3102243 3104318 D Core component of the signal recognition particle (SRP); the SRP is a ribonucleoprotein (RNP) complex that functions in targeting nascent secretory proteins to the endoplasmic reticulum (ER) membrane; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0048500 - signal recognition particle [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IDA] [PMID 7925282]; GO_function: GO:0008312 - 7S RNA binding [Evidence IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence IPI] [PMID 7925282]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA]; GO_process: GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [Evidence IC] [PMID 7925282]; GO_process: GO:0045047 - protein targeting to ER [Evidence IPI] [PMID 7925282]; Srp72p 3102243..3104318 Sugiyamaella lignohabitans 30038074 AWJ20_983 CDS NIP7 NC_031672.1 3104510 3105055 R Nucleolar protein required for 60S ribosome subunit biogenesis; constituent of 66S pre-ribosomal particles; physically interacts with Nop8p and the exosome subunit Rrp43p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9271378]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9271378]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9271378]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 9271378]; GO_process: GO:0042255 - ribosome assembly [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nip7p complement(3104510..3105055) Sugiyamaella lignohabitans 30038075 AWJ20_984 CDS PUS1 NC_031672.1 3105542 3106849 R tRNA:pseudouridine synthase; introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA; nuclear protein that appears to be involved in tRNA export; also acts on U2 snRNA; PUS1 has a paralog, PUS2, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 8641292]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA] [PMID 10356324]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0031120 - snRNA pseudouridine synthesis [Evidence IMP] [PMID 10022901]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA] [PMID 10356324]; pseudouridine synthase PUS1 complement(3105542..3106849) Sugiyamaella lignohabitans 30038076 AWJ20_985 CDS NOC2 NC_031672.1 3107658 3109862 R Protein involved in ribosome biogenesis; forms a nucleolar complex with Mak21p that binds to 90S and 66S pre-ribosomes; forms a nuclear complex with Noc3p that binds to 66S pre-ribosomes; both complexes mediate intranuclear transport of ribosomal precursors; acts as part of a Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription and has a role in bigenesis of the large ribosomal subunit; GO_component: GO:0030690 - Noc1p-Noc2p complex [Evidence IPI] [PMID 11371346]; GO_component: GO:0030691 - Noc2p-Noc3p complex [Evidence IPI] [PMID 11371346]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23209026]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 23209026]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Noc2p complement(3107658..3109862) Sugiyamaella lignohabitans 30038077 AWJ20_986 CDS CUZ1 NC_031672.1 3112689 3113711 D Protein with a role in the ubiquitin-proteasome pathway; interacts with ubiquitinated protein, Cdc48p and the proteasomal regulatory particle; may protect cells from trivalent metalloid induced proteotoxicity; contains a PACE promoter element and is co-regulated with proteasome subunit genes; AN1-type zinc finger protein, with DHHC and ubiquitin-like domains (UBL); ortholog of ZFAND1, a human gene linked to cancer; protein abundance increases under DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0070628 - proteasome binding [Evidence IDA] [PMID 24121501]; GO_function: GO:0070628 - proteasome binding [Evidence IDA] [PMID 24297164]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0071243 - cellular response to arsenic-containing substance [Evidence IGI,IMP] [PMID 24297164]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP,IPI] [PMID 24121501]; Cuz1p join(3112689..3112771,3113003..3113711) Sugiyamaella lignohabitans 30038078 AWJ20_987 CDS TIM21 NC_031672.1 3117905 3118669 D Nonessential component of the TIM23 complex; interacts with the Translocase of the Outer Mitochondrial membrane (TOM complex) and with respiratory enzymes; may regulate the Translocase of the Inner Mitochondrial membrane (TIM23 complex) activity; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IDA] [PMID 15797382]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IDA] [PMID 15878866]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 15797382]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tim21p 3117905..3118669 Sugiyamaella lignohabitans 30038079 AWJ20_988 CDS MNP1 NC_031672.1 3119350 3119871 R Protein associated with the mitochondrial nucleoid; putative mitochondrial ribosomal protein with similarity to E. coli L7/L12 ribosomal protein; required for normal respiratory growth; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15221522]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence ISS] [PMID 9445368]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 15221522]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial nucleoid protein MNP1 complement(3119350..3119871) Sugiyamaella lignohabitans 30038080 AWJ20_989 CDS AWJ20_989 NC_031672.1 3120199 3124233 D putative spidroin-1-like join(3120199..3120241,3120318..3120341,3120687..3120767,3122960..3124233) Sugiyamaella lignohabitans 30038081 AWJ20_990 CDS EAP1 NC_031672.1 3121116 3126323 R Enhanced Adherence to Polystyrene; similar to S. pombe predicted GPI-anchored SPBPJ4664.02; similar to RBT1; internal hexapeptide PATEST repeat region is expanded in allelic CaP19.8979; identical to C. albicans morphogenetic related gene CPH3 (AAM46085); no clear allele; putative cell wall adhesin complement(3121116..3126323) Sugiyamaella lignohabitans 30038083 AWJ20_991 CDS KRE9 NC_031672.1 3129294 3130142 D Glycoprotein involved in cell wall beta-glucan assembly; null mutation leads to severe growth defects, aberrant multibudded morphology, and mating defects; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 8413233]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006078 - (1->6)-beta-D-glucan biosynthetic process [Evidence IEA]; GO_process: GO:0006077 - (1->6)-beta-D-glucan metabolic process [Evidence IMP] [PMID 8413233]; GO_process: GO:0042546 - cell wall biogenesis [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 8413233]; Kre9p 3129294..3130142 Sugiyamaella lignohabitans 30038084 AWJ20_992 CDS AWJ20_992 NC_031672.1 3130551 3132017 D uncharacterized protein 3130551..3132017 Sugiyamaella lignohabitans 30038085 AWJ20_993 CDS KEX1 NC_031672.1 3132304 3133923 R Cell death protease essential for hypochlorite-induced apoptosis; involved in the processing of killer toxin and alpha factor precursor; cleaves Lys and Arg residues from the C-terminus of peptides and proteins; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 8308064]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence TAS] [PMID 8308064]; GO_process: GO:0006915 - apoptotic process [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 23656787]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Kex1p complement(3132304..3133923) Sugiyamaella lignohabitans 30038086 AWJ20_994 CDS AXL2 NC_031672.1 3135084 3137918 R Integral plasma membrane protein; required for axial budding in haploid cells; localizes to the incipient bud site and bud neck; glycosylated by Pmt4p; potential Cdc28p substrate; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15282802]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 8846915]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005940 - septin ring [Evidence IDA] [PMID 8846915]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 8846915]; Axl2p complement(3135084..3137918) Sugiyamaella lignohabitans 30038087 AWJ20_995 CDS BST1 NC_031672.1 3143442 3147485 D GPI inositol deacylase of the endoplasmic reticulum (ER); negatively regulates COPII vesicle formation; prevents production of vesicles with defective subunits; required for proper discrimination between resident ER proteins and Golgi-bound cargo molecules; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8862519]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 8862519]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0050185 - phosphatidylinositol deacylase activity [Evidence IGI] [PMID 14734546]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8862519]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11673477]; GO_process: GO:0006505 - GPI anchor metabolic process [Evidence IEA]; GO_process: GO:0006505 - GPI anchor metabolic process [Evidence IGI] [PMID 14734546]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006621 - protein retention in ER lumen [Evidence IMP] [PMID 8862519]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016050 - vesicle organization [Evidence IGI,IMP] [PMID 8862519]; Bst1p 3143442..3147485 Sugiyamaella lignohabitans 30038088 AWJ20_996 CDS STE2 NC_031672.1 3147722 3148894 R alpha-factor pheromone receptor STE2 complement(3147722..3148894) Sugiyamaella lignohabitans 30038089 AWJ20_997 CDS AWJ20_997 NC_031672.1 3153935 3154969 D uncharacterized protein 3153935..3154969 Sugiyamaella lignohabitans 30038090 AWJ20_998 CDS MOT2 NC_031672.1 3158164 3159909 R Ubiquitin-protein ligase subunit of the CCR4-NOT complex; with Ubc4p, ubiquitinates nascent polypeptide-associated complex subunits and histone demethyase Jhd2p; CCR4-NOT has roles in transcription regulation, mRNA degradation, and post-transcriptional modifications; regulates levels of DNA Polymerase-{alpha} to promote efficient and accurate DNA replication; GO_component: GO:0030015 - CCR4-NOT core complex [Evidence IPI] [PMID 10490603]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11889048]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16926149]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 19346402]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0031087 - deadenylation-independent decapping of nuclear-transcribed mRNA [Evidence IMP] [PMID 15706350]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 11404327]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA,IPI] [PMID 21406554]; GO_process: GO:0010498 - proteasomal protein catabolic process [Evidence IGI] [PMID 24261871]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA,IMP] [PMID 19346402]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 16926149]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; CCR4-NOT core ubiquitin-protein ligase subunit MOT2 complement(3158164..3159909) Sugiyamaella lignohabitans 30038091 AWJ20_999 CDS AWJ20_999 NC_031672.1 3161270 3162115 D uncharacterized protein 3161270..3162115 Sugiyamaella lignohabitans 30038092 AWJ20_1000 CDS END3 NC_031672.1 3162873 3164120 R EH domain-containing protein involved in endocytosis; actin cytoskeletal organization and cell wall morphogenesis; forms a complex with Sla1p and Pan1p; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence TAS] [PMID 10652251]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 10594004]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence TAS] [PMID 10652251]; GO_process: GO:0007015 - actin filament organization [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 15944351]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 10652251]; GO_process: GO:0006897 - endocytosis [Evidence IEA,IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8380177]; End3p complement(3162873..3164120) Sugiyamaella lignohabitans 30032755 AWJ20_1001 CDS ARF2 NC_031672.1 3164923 3165468 R ADP-ribosylation factor; GTPase of the Ras superfamily involved in regulation of coated formation vesicles in intracellular trafficking within the Golgi; ARF2 has a paralog, ARF1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 20841378]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 8816753]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20444982]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Arf family GTPase ARF2 complement(3164923..3165468) Sugiyamaella lignohabitans 30032756 AWJ20_1002 CDS VMA1 NC_031672.1 3171117 3172850 D Subunit A of the V1 peripheral membrane domain of V-ATPase; protein precursor undergoes self-catalyzed splicing to yield the extein Tfp1p and the intein Vde (PI-SceI), which is a site-specific endonuclease; the V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase) has eight subunits; involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 18632794]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 7775427]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 9442887]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0004520 - endodeoxyribonuclease activity [Evidence TAS] [PMID 1534148]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 10224039]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 9442887]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0046034 - ATP metabolic process [Evidence IEA]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IDA] [PMID 8508780]; GO_process: GO:0016539 - intein-mediated protein splicing [Evidence IEA]; GO_process: GO:0006314 - intron homing [Evidence IEA]; GO_process: GO:0006314 - intron homing [Evidence TAS] [PMID 1534148]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0030908 - protein splicing [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IMP] [PMID 18048916]; H(+)-transporting V1 sector ATPase subunit A 3171117..3172850 Sugiyamaella lignohabitans 30032757 AWJ20_1003 CDS PPH21 NC_031672.1 3175209 3175943 R Catalytic subunit of protein phosphatase 2A (PP2A); functionally redundant with Pph22p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis; forms nuclear foci upon DNA replication stress; PPH21 has a paralog, PPH22, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IDA] [PMID 17550305]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IMP] [PMID 2176150]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 12518319]; GO_process: GO:0007015 - actin filament organization [Evidence TAS] [PMID 9001215]; GO_process: GO:0007117 - budding cell bud growth [Evidence TAS] [PMID 9001215]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IPI] [PMID 9001215]; GO_process: GO:0006470 - protein dephosphorylation [Evidence TAS] [PMID 9001215]; GO_process: GO:0006417 - regulation of translation [Evidence IPI] [PMID 10329624]; phosphoprotein phosphatase 2A catalytic subunit PPH21 complement(3175209..3175943) Sugiyamaella lignohabitans 30032758 AWJ20_1004 CDS PPH21 NC_031672.1 3176032 3176490 R Catalytic subunit of protein phosphatase 2A (PP2A); functionally redundant with Pph22p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis; forms nuclear foci upon DNA replication stress; PPH21 has a paralog, PPH22, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IDA] [PMID 17550305]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IMP] [PMID 2176150]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 12518319]; GO_process: GO:0007015 - actin filament organization [Evidence TAS] [PMID 9001215]; GO_process: GO:0007117 - budding cell bud growth [Evidence TAS] [PMID 9001215]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IPI] [PMID 9001215]; GO_process: GO:0006470 - protein dephosphorylation [Evidence TAS] [PMID 9001215]; GO_process: GO:0006417 - regulation of translation [Evidence IPI] [PMID 10329624]; phosphoprotein phosphatase 2A catalytic subunit PPH21 complement(3176032..3176490) Sugiyamaella lignohabitans 30032759 AWJ20_1005 CDS RDI1 NC_031672.1 3181694 3182314 D Rho GDP dissociation inhibitor; involved in the localization and regulation of Cdc42p and Rho1p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15108020]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 15108020]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10066831]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005094 - Rho GDP-dissociation inhibitor activity [Evidence IEA]; GO_function: GO:0005094 - Rho GDP-dissociation inhibitor activity [Evidence IDA] [PMID 10066831]; GO_process: GO:0007015 - actin filament organization [Evidence IDA,IMP] [PMID 9242378]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IDA] [PMID 11598008]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IPI] [PMID 10066831]; Rdi1p 3181694..3182314 Sugiyamaella lignohabitans 30032760 AWJ20_1006 CDS RBS1 NC_031672.1 3182580 3184979 R R3H domain-containing protein 2 complement(3182580..3184979) Sugiyamaella lignohabitans 30032761 AWJ20_1007 CDS UFD2 NC_031672.1 3185690 3189184 D Ubiquitin chain assembly factor (E4); cooperates with a ubiquitin-activating enzyme (E1), a ubiquitin-conjugating enzyme (E2), and a ubiquitin protein ligase (E3) to conjugate ubiquitin to substrates; also functions as an E3; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000151 - ubiquitin ligase complex [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0034450 - ubiquitin-ubiquitin ligase activity [Evidence IEA]; GO_function: GO:0034450 - ubiquitin-ubiquitin ligase activity [Evidence IDA] [PMID 10089879]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21148305]; GO_process: GO:0071361 - cellular response to ethanol [Evidence IMP] [PMID 10089879]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA,IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 10089879]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP,IPI] [PMID 10089879]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 7615550]; ubiquitin-ubiquitin ligase UFD2 join(3185690..3185710,3185882..3189184) Sugiyamaella lignohabitans 30032762 AWJ20_1008 CDS MCT1 NC_031672.1 3189445 3190536 R Predicted malonyl-CoA:ACP transferase; putative component of a type-II mitochondrial fatty acid synthase that produces intermediates for phospholipid remodeling; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP,ISS] [PMID 9388293]; GO_function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]; GO_function: GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IMP,ISS] [PMID 9388293]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 9388293]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IMP,ISS] [PMID 9388293]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; [acyl-carrier-protein] S-malonyltransferase complement(3189445..3190536) Sugiyamaella lignohabitans 30032763 AWJ20_1009 CDS CHS7 NC_031672.1 3191592 3192584 D hypothetical protein; may be involved in chitin biosynthesis by regulation of Chs3p export from the ER; relocalizes from bud neck to ER upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 22842922]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10366589]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 15623581]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IDA] [PMID 10366589]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IMP] [PMID 10366589]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 15623581]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Chs7p 3191592..3192584 Sugiyamaella lignohabitans 30032764 AWJ20_1010 CDS RIA1 NC_031672.1 3193133 3197725 D Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis; with Sdo1p, a guanine nucleotide exchange factor (GEF), promotes release of Tif6p from 60S ribosomal subunits in the cytoplasm so that they can assemble with 40S subunits to generate mature ribosomes; required for quality control check of newly made large ribosomal subunits before they are released into the pool of translating ribosomes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11779510]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11779510]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0042256 - mature ribosome assembly [Evidence IMP] [PMID 11779510]; GO_process: GO:0042256 - mature ribosome assembly [Evidence ISO] [PMID 21536732]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GTPase RIA1 join(3193133..3196177,3196538..3197725) Sugiyamaella lignohabitans 30032766 AWJ20_1011 CDS AWJ20_1011 NC_031672.1 3197762 3199243 D uncharacterized protein 3197762..3199243 Sugiyamaella lignohabitans 30032767 AWJ20_1012 CDS AWJ20_1012 NC_031672.1 3199640 3202777 D uncharacterized protein join(3199640..3200262,3200650..3201156,3201544..3202002,3202390..3202777) Sugiyamaella lignohabitans 30032768 AWJ20_1013 CDS AMN1 NC_031672.1 3213915 3215813 D Protein required for daughter cell separation; multiple mitotic checkpoints, and chromosome stability; contains 12 degenerate leucine-rich repeat motifs; expression is induced by the Mitotic Exit Network (MEN); GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 12628189]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12628189]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12628189]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12628189]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007093 - mitotic cell cycle checkpoint [Evidence IMP] [PMID 12628189]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0001100 - negative regulation of exit from mitosis [Evidence IGI,IMP] [PMID 12628189]; Amn1p 3213915..3215813 Sugiyamaella lignohabitans 30032769 AWJ20_1014 CDS AWJ20_1014 NC_031672.1 3219370 3220617 R hypothetical protein; has strong similarity to alanyl-tRNA synthases from Eubacteria; null mutant displays decreased translation rate and increased readthrough of premature stop codons; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YNL040W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]; GO_function: GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; putative alanine--tRNA ligase complement(3219370..3220617) Sugiyamaella lignohabitans 30032770 AWJ20_1015 CDS AWJ20_1015 NC_031672.1 3221015 3221659 R uncharacterized protein complement(3221015..3221659) Sugiyamaella lignohabitans 30032771 AWJ20_1016 CDS ELO2 NC_031672.1 3221953 3222981 R Fatty acid elongase, involved in sphingolipid biosynthesis; acts on fatty acids of up to 24 carbons in length; mutations have regulatory effects on 1,3-beta-glucan synthase, vacuolar ATPase, and the secretory pathway; FEN1 has a paralog, ELO1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 12087109]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0009922 - fatty acid elongase activity [Evidence IMP] [PMID 12684876]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0030497 - fatty acid elongation [Evidence IMP] [PMID 9211877]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IMP] [PMID 9211877]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 9832547]; fatty acid elongase ELO2 complement(3221953..3222981) Sugiyamaella lignohabitans 30032772 AWJ20_1017 CDS ROM2 NC_031672.1 3224498 3228115 R Rho family guanine nucleotide exchange factor ROM2 complement(3224498..3228115) Sugiyamaella lignohabitans 30032773 AWJ20_1018 CDS SNT1 NC_031672.1 3235269 3241535 R Subunit of the Set3C deacetylase complex; interacts directly with the Set3C subunit, Sif2p; putative DNA-binding protein; mutant has increased aneuploidy tolerance; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IPI] [PMID 11711434]; GO_process: GO:0032874 - positive regulation of stress-activated MAPK cascade [Evidence IMP] [PMID 18487345]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 19379692]; Snt1p complement(join(3235269..3241119,3241528..3241535)) Sugiyamaella lignohabitans 30032774 AWJ20_1019 CDS THI22 NC_031672.1 3242117 3243508 R Protein with similarity to hydroxymethylpyrimidine phosphate kinases; member of a gene family with THI20 and THI21; not required for thiamine biosynthesis; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_function: GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IGI] [PMID 15614489]; GO_function: GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence ISA] [PMID 10383756]; GO_function: GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IGI] [PMID 15614489]; GO_function: GO:0050334 - thiaminase activity [Evidence IEA]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IEA]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IEP] [PMID 10383756]; GO_process: GO:0006772 - thiamine metabolic process [Evidence IEA]; putative phosphomethylpyrimidine kinase complement(3242117..3243508) Sugiyamaella lignohabitans 30032775 AWJ20_1020 CDS STP3 NC_031672.1 3245542 3247353 D Zinc-finger hypothetical protein; possibly involved in pre-tRNA splicing and in uptake of branched-chain amino acids; STP3 has a paralog, STP4, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA,IDA] [PMID 19111667]; GO_process: GO:0008150 - biological_process [Evidence ND]; Stp3p 3245542..3247353 Sugiyamaella lignohabitans 30032777 AWJ20_1021 CDS AWJ20_1021 NC_031672.1 3250490 3251152 R potential mitochondrial NADH-Ubiquinone Oxidoreductase Complex I subunit similar to Y.lipolytica NUKM subunit and mammalian PSST, CI-20kd or NDUFS7 subunit; allele of CaO19.6794; putative mitochondrial Complex I, NUKM_20kd subunit complement(3250490..3251152) Sugiyamaella lignohabitans 30032778 AWJ20_1022 CDS EXG1 NC_031672.1 3257423 3259190 D Major exo-1,3-beta-glucanase of the cell wall; involved in cell wall beta-glucan assembly; exists as three differentially glycosylated isoenzymes; EXG1 has a paralog, SPR1, that arose from the whole genome duplication; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 19129178]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 9748433]; GO_function: GO:0004338 - glucan exo-1,3-beta-glucosidase activity [Evidence IEA]; GO_function: GO:0004338 - glucan exo-1,3-beta-glucosidase activity [Evidence ISS] [PMID 9748433]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006073 - cellular glucan metabolic process [Evidence IGI,IMP] [PMID 7565587]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence ISS] [PMID 9748433]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Exg1p join(3257423..3257484,3258005..3259190) Sugiyamaella lignohabitans 30032779 AWJ20_1023 CDS NUD1 NC_031672.1 3259462 3263217 R Component of the spindle pole body outer plaque; acts through the mitotic exit network to specify asymmetric spindle pole body inheritance; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0051293 - establishment of spindle localization [Evidence IGI,IMP] [PMID 22385961]; GO_process: GO:0010458 - exit from mitosis [Evidence IMP] [PMID 16888627]; GO_process: GO:0045132 - meiotic chromosome segregation [Evidence IMP] [PMID 16888627]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000073 - spindle pole body separation [Evidence IMP] [PMID 22385961]; Nud1p complement(3259462..3263217) Sugiyamaella lignohabitans 30032780 AWJ20_1024 CDS PCS60 NC_031672.1 3270117 3272036 D Oxalyl-CoA synthetase; capable of catalyzing conversion of oxalate to oxalyl-CoA; catalyzes first step in pathway of oxalate degradation that functions to protect yeast from inhibitory effects of oxalate; peroxisomal protein that binds mRNA; localizes to both peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid; similar to E. coli long chain acyl-CoA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 8841414]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8841414]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0050203 - oxalate-CoA ligase activity [Evidence IDA,IMP] [PMID 24291261]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0033611 - oxalate catabolic process [Evidence IDA,IMP] [PMID 24291261]; Pcs60p 3270117..3272036 Sugiyamaella lignohabitans 30032781 AWJ20_1025 CDS DUR1,2 NC_031672.1 3272207 3274309 R Urea amidolyase; contains both urea carboxylase and allophanate hydrolase activities, degrades urea to CO2 and NH3; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004039 - allophanate hydrolase activity [Evidence IEA]; GO_function: GO:0004039 - allophanate hydrolase activity [Evidence IMP] [PMID 6105114]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence IEA]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO_function: GO:0004847 - urea carboxylase activity [Evidence IEA]; GO_function: GO:0004847 - urea carboxylase activity [Evidence IMP] [PMID 6105114]; GO_process: GO:0000256 - allantoin catabolic process [Evidence TAS] [PMID 1938916]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IMP] [PMID 6105114]; bifunctional urea carboxylase/allophanate hydrolase complement(3272207..3274309) Sugiyamaella lignohabitans 30032782 AWJ20_1027 CDS AWJ20_1027 NC_031672.1 3277141 3279240 D uncharacterized protein 3277141..3279240 Sugiyamaella lignohabitans 30032784 AWJ20_1029 CDS AWJ20_1029 NC_031672.1 3280045 3282432 D uncharacterized protein 3280045..3282432 Sugiyamaella lignohabitans 30032786 AWJ20_1030 CDS KEL2 NC_031672.1 3282566 3284674 R Protein that negatively regulates mitotic exit; functions in a complex with Kel1p, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate; KEL2 has a paralog, KEL1, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9786949]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 9786949]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9786949]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IGI] [PMID 9786949]; GO_process: GO:0001100 - negative regulation of exit from mitosis [Evidence IMP,IPI] [PMID 12234925]; Kel2p complement(3282566..3284674) Sugiyamaella lignohabitans 30032788 AWJ20_1031 CDS AWJ20_1031 NC_031672.1 3286168 3289005 D filamentous hemagglutinin family outer membrane protein 3286168..3289005 Sugiyamaella lignohabitans 30032789 AWJ20_1032 CDS AWJ20_1032 NC_031672.1 3289357 3290073 D uncharacterized protein 3289357..3290073 Sugiyamaella lignohabitans 30032790 AWJ20_1033 CDS ODE1 NC_031672.1 3290217 3291449 R one of two likely delta-12 fatty acid desaturases similar to E.nudulans OdeA; conversion of oleic acid to linoleic acid, psi factor production; allele of CaO19.118; putative delta-12 fatty acid desaturase complement(3290217..3291449) Sugiyamaella lignohabitans 30032791 AWJ20_1034 CDS RRP43 NC_031672.1 3294348 3295235 R Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp43p (OIP2, EXOSC8); protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9891085]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9891085]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 9891085]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12364597]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9390555]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IMP] [PMID 19369424]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 18940861]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 12364597]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Rrp43p complement(3294348..3295235) Sugiyamaella lignohabitans 30032792 AWJ20_1035 CDS TIM13 NC_031672.1 3295581 3295793 D Mitochondrial intermembrane space protein; forms a complex with Tim8p that delivers a subset of hydrophobic proteins to the TIM22 complex for insertion into the inner membrane; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 10051608]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 10397776]; GO_component: GO:0042719 - mitochondrial intermembrane space protein transporter complex [Evidence IPI] [PMID 10051608]; GO_component: GO:0042719 - mitochondrial intermembrane space protein transporter complex [Evidence IDA] [PMID 12221072]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 10051608]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA,IMP] [PMID 10469659]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IDA] [PMID 10051608]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IDA,IMP] [PMID 10469659]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tim13p 3295581..3295793 Sugiyamaella lignohabitans 30032793 AWJ20_1036 CDS RBK1 NC_031672.1 3296249 3297190 D Putative ribokinase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence ISS] [PMID 1964349]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0004747 - ribokinase activity [Evidence IEA,IEA]; GO_function: GO:0004747 - ribokinase activity [Evidence ISS] [PMID 1964349]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019303 - D-ribose catabolic process [Evidence IEA]; GO_process: GO:0006014 - D-ribose metabolic process [Evidence IEA]; GO_process: GO:0006014 - D-ribose metabolic process [Evidence ISS] [PMID 1964349]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Rbk1p 3296249..3297190 Sugiyamaella lignohabitans 30032794 AWJ20_1037 CDS UBP12 NC_031672.1 3297381 3299912 R Ubiquitin-specific protease; cleaves ubiquitin from ubiquitinated proteins; present in the nucleus and cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence TAS] [PMID 8982460]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp12p complement(3297381..3299912) Sugiyamaella lignohabitans 30032795 AWJ20_1038 CDS UBP12 NC_031672.1 3300118 3302301 R Ubiquitin-specific protease; cleaves ubiquitin from ubiquitinated proteins; present in the nucleus and cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence TAS] [PMID 8982460]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp12p complement(3300118..3302301) Sugiyamaella lignohabitans 30032796 AWJ20_1039 CDS AWJ20_1039 NC_031672.1 3308516 3310177 D uncharacterized protein 3308516..3310177 Sugiyamaella lignohabitans 30032797 AWJ20_1040 CDS HUL4 NC_031672.1 3311074 3313935 D Protein with similarity to hect domain E3 ubiquitin-protein ligases; not essential for viability; found in association with Trf4 in TRAMP complex; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15828860]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IBA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence ISS] [PMID 9858558]; GO_process: GO:0016567 - protein ubiquitination [Evidence ISS] [PMID 9858558]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IBA]; putative E3 ubiquitin-protein ligase HUL4 3311074..3313935 Sugiyamaella lignohabitans 30032799 AWJ20_1041 CDS SOL1 NC_031672.1 3318069 3318983 D Protein with a possible role in tRNA export; shows similarity to 6-phosphogluconolactonase non-catalytic domains but does not exhibit this enzymatic activity; homologous to Sol3p and Sol4p; SOL1 has a paralog, SOL2, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15454531]; GO_function: GO:0017057 - 6-phosphogluconolactonase activity [Evidence IDA] [PMID 15454531]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IGI,IMP] [PMID 15454531]; Sol1p 3318069..3318983 Sugiyamaella lignohabitans 30032800 AWJ20_1042 CDS SRS2 NC_031672.1 3319465 3321984 R DNA helicase SRS2 complement(3319465..3321984) Sugiyamaella lignohabitans 30032801 AWJ20_1043 CDS MSH2 NC_031672.1 3322226 3325102 D Protein that binds to DNA mismatches; forms heterodimers with Msh3p and Msh6p that bind to DNA mismatches to initiate the mismatch repair process; contains a Walker ATP-binding motif required for repair activity and involved in interstrand cross-link repair; Msh2p-Msh6p binds to and hydrolyzes ATP; GO_component: GO:0032301 - MutSalpha complex [Evidence IEA]; GO_component: GO:0032301 - MutSalpha complex [Evidence IPI] [PMID 8816473]; GO_component: GO:0032302 - MutSbeta complex [Evidence IEA]; GO_component: GO:0032302 - MutSbeta complex [Evidence IPI] [PMID 8805366]; GO_component: GO:0000228 - nuclear chromosome [Evidence IDA] [PMID 10882115]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 9545323]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9819445]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0032135 - DNA insertion or deletion binding [Evidence IDA] [PMID 8805366]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IBA]; GO_function: GO:0000403 - Y-form DNA binding [Evidence IDA] [PMID 16781730]; GO_function: GO:0003684 - damaged DNA binding [Evidence IBA]; GO_function: GO:0000406 - double-strand/single-strand DNA junction binding [Evidence IDA] [PMID 16781730]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 10066781]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 9018043]; GO_function: GO:0032137 - guanine/thymine mispair binding [Evidence IDA] [PMID 8816473]; GO_function: GO:0000404 - heteroduplex DNA loop binding [Evidence IDA] [PMID 16781730]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0032138 - single base insertion or deletion binding [Evidence IDA] [PMID 8816473]; GO_function: GO:0032138 - single base insertion or deletion binding [Evidence IMP] [PMID 9111312]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 15920474]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 16157874]; GO_process: GO:0036297 - interstrand cross-link repair [Evidence IGI] [PMID 22912599]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IBA]; GO_process: GO:0006311 - meiotic gene conversion [Evidence IMP] [PMID 1334021]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 1334021]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 16702432]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 8056309]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 10523644]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 9520271]; GO_process: GO:0006312 - mitotic recombination [Evidence IMP] [PMID 8849883]; GO_process: GO:0045128 - negative regulation of reciprocal meiotic recombination [Evidence IBA]; GO_process: GO:0006301 - postreplication repair [Evidence IBA]; GO_process: GO:0000735 - removal of nonhomologous ends [Evidence IMP] [PMID 10523644]; GO_process: GO:0000735 - removal of nonhomologous ends [Evidence IGI,IMP] [PMID 9256462]; mismatch repair ATPase MSH2 3322226..3325102 Sugiyamaella lignohabitans 30032802 AWJ20_1044 CDS AWJ20_1044 NC_031672.1 3325169 3327517 R uncharacterized protein complement(3325169..3327517) Sugiyamaella lignohabitans 30032803 AWJ20_1045 CDS AWJ20_1045 NC_031672.1 3328183 3329025 R NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein complement(3328183..3329025) Sugiyamaella lignohabitans 30032804 AWJ20_1046 CDS FEX2 NC_031672.1 3330039 3331277 D Protein involved in fluoride export; nearly identical to FEX1, and deletion of both proteins results in a large increase in fluoride sensitivity compared with the single mutant; contains two FEX domains connected by a linker; part of a widespread family of conserved fluoride export proteins; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fex2p 3330039..3331277 Sugiyamaella lignohabitans 30032805 AWJ20_1047 CDS AWJ20_1047 NC_031672.1 3332434 3334089 D arrestin Aly1 related 3332434..3334089 Sugiyamaella lignohabitans 30032806 AWJ20_1048 CDS RTG1 NC_031672.1 3338630 3340417 D Transcription factor (bHLH) involved in interorganelle communication; contributes to communication between mitochondria, peroxisomes, and nucleus; target of Hog1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10848632]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10848632]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA,IMP] [PMID 7493987]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA,IMP] [PMID 8422683]; GO_process: GO:0071400 - cellular response to oleic acid [Evidence IMP] [PMID 12393187]; GO_process: GO:0031930 - mitochondria-nucleus signaling pathway [Evidence IDA] [PMID 7493987]; GO_process: GO:0031930 - mitochondria-nucleus signaling pathway [Evidence IMP] [PMID 8422683]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12393187]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 7493987]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8422683]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rtg1p 3338630..3340417 Sugiyamaella lignohabitans 30032807 AWJ20_1049 CDS EMI5 NC_031672.1 3341988 3342461 R succinate dehydrogenase assembly factor SDH5 complement(3341988..3342461) Sugiyamaella lignohabitans 30032808 AWJ20_1050 CDS ATG18 NC_031672.1 3344004 3345086 D phosphoinositide binding protein ATG18 3344004..3345086 Sugiyamaella lignohabitans 30032810 AWJ20_1051 CDS COX23 NC_031672.1 3345420 3345713 D Protein that functions in mitochondrial copper homeostasis; mitochondrial intermembrane space protein; essential for functional cytochrome oxidase expression; homologous to Cox17p; contains twin cysteine-x9-cysteine motifs; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15145942]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15145942]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0033108 - mitochondrial respiratory chain complex assembly [Evidence IMP] [PMID 19703468]; Cox23p 3345420..3345713 Sugiyamaella lignohabitans 30032811 AWJ20_1052 CDS AWJ20_1052 NC_031672.1 3345999 3347678 R uncharacterized protein complement(3345999..3347678) Sugiyamaella lignohabitans 30032812 AWJ20_1053 CDS AWJ20_1053 NC_031672.1 3350016 3353159 R uncharacterized protein complement(join(3350016..3350023,3350094..3352758,3352845..3353159)) Sugiyamaella lignohabitans 30032813 AWJ20_1054 CDS EHD3 NC_031672.1 3353748 3354650 R 3-hydroxyisobutyryl-CoA hydrolase; member of a family of enoyl-CoA hydratase/isomerases; non-tagged protein is detected in highly purified mitochondria in high-throughput studies; phosphorylated; mutation affects fluid-phase endocytosis; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity [Evidence IEA]; GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity [Evidence IDA,ISS] [PMID 12697341]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12697341]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006574 - valine catabolic process [Evidence IEA]; Ehd3p complement(3353748..3354650) Sugiyamaella lignohabitans 30032814 AWJ20_1055 CDS TOM70 NC_031672.1 3355304 3357169 R protein channel TOM70 complement(3355304..3357169) Sugiyamaella lignohabitans 30032815 AWJ20_1056 CDS CAT2 NC_031672.1 3362467 3364380 D Carnitine acetyl-CoA transferase; present in both mitochondria and peroxisomes; transfers activated acetyl groups to carnitine to form acetylcarnitine which can be shuttled across membranes; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 18427809]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 18427809]; GO_function: GO:0004092 - carnitine O-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004092 - carnitine O-acetyltransferase activity [Evidence IMP,ISS] [PMID 8420957]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0009437 - carnitine metabolic process [Evidence IMP] [PMID 11329169]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; carnitine O-acetyltransferase CAT2 3362467..3364380 Sugiyamaella lignohabitans 30032816 AWJ20_1057 CDS EAF7 NC_031672.1 3364563 3365957 R Subunit of the NuA4 histone acetyltransferase complex; NuA4 acetylates the N-terminal tails of histones H4 and H2A; GO_component: GO:0043189 - H4/H2A histone acetyltransferase complex [Evidence IEA]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15353583]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA] [PMID 15353583]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IPI] [PMID 15353583]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IPI] [PMID 15353583]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP,IPI] [PMID 15353583]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Eaf7p complement(3364563..3365957) Sugiyamaella lignohabitans 30032817 AWJ20_1058 CDS AWJ20_1058 NC_031672.1 3367207 3369519 R uncharacterized protein complement(3367207..3369519) Sugiyamaella lignohabitans 30032818 AWJ20_1059 CDS SPT5 NC_031672.1 3370730 3373084 R Component of the universally conserved Spt4/5 complex (DSIF complex); the complex has multiple roles in concert with RNA polymerases I and II, including regulation of transcription elongation, RNA processing, quality control, and transcription-coupled DNA repair; GO_component: GO:0032044 - DSIF complex [Evidence IPI] [PMID 9450930]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1840633]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 16908835]; GO_function: GO:0001042 - RNA polymerase I core binding [Evidence IPI] [PMID 21467036]; GO_function: GO:0001179 - RNA polymerase I transcription factor binding [Evidence IPI] [PMID 21467036]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 9450930]; GO_function: GO:0001181 - core RNA polymerase I binding transcription factor activity [Evidence IC] [PMID 21467036]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IGI,IMP,IPI] [PMID 9450930]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0019843 - rRNA binding [Evidence IDA] [PMID 21467036]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IGI,IPI] [PMID 12556496]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence IMP] [PMID 20713510]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 12556496]; GO_process: GO:2001208 - negative regulation of transcription elongation from RNA polymerase I promoter [Evidence IGI] [PMID 21467039]; GO_process: GO:2001209 - positive regulation of transcription elongation from RNA polymerase I promoter [Evidence IMP] [PMID 21467039]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 19365074]; GO_process: GO:0032784 - regulation of DNA-templated transcription, elongation [Evidence IEA]; GO_process: GO:2000232 - regulation of rRNA processing [Evidence IMP] [PMID 21949810]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0090262 - regulation of transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 20042611]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; transcription elongation factor SPT5 complement(3370730..3373084) Sugiyamaella lignohabitans 30032819 AWJ20_1060 CDS GPH1 NC_031672.1 3378448 3381129 D Glycogen phosphorylase required for the mobilization of glycogen; non-essential; regulated by cyclic AMP-mediated phosphorylation; expression is regulated by stress-response elements and by the HOG MAP kinase pathway; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24146988]; GO_function: GO:0008184 - glycogen phosphorylase activity [Evidence IEA]; GO_function: GO:0008184 - glycogen phosphorylase activity [Evidence IMP] [PMID 2657401]; GO_function: GO:0004645 - phosphorylase activity [Evidence IEA,IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0005980 - glycogen catabolic process [Evidence IMP] [PMID 2657401]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IEA]; Gph1p 3378448..3381129 Sugiyamaella lignohabitans 30032821 AWJ20_1063 CDS CCT2 NC_031672.1 3382779 3384236 D Subunit beta of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct2p 3382779..3384236 Sugiyamaella lignohabitans 30032824 AWJ20_1064 CDS ATG20 NC_031672.1 3386690 3388498 D Sorting nexin family member; required for the cytoplasm-to-vacuole targeting (Cvt) pathway and for endosomal sorting; has a Phox homology domain that binds phosphatidylinositol-3-phosphate; interacts with Snx4p; potential Cdc28p substrate; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12554655]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 12048214]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 12048214]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 15659643]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_component: GO:0034045 - pre-autophagosomal structure membrane [Evidence IEA]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 12048214]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 12554655]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IGI,IMP,IPI] [PMID 12554655]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 12048214]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg20p 3386690..3388498 Sugiyamaella lignohabitans 30032825 AWJ20_1065 CDS LOT6 NC_031672.1 3388717 3389325 R FMN-dependent NAD(P)H:quinone reductase; role in apoptosis-like cell death; may be involved in quinone detoxification; expression elevated at low temperature; sequesters the Cin5p transcription factor in the cytoplasm in complex with the proteasome under reducing conditions; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 17298444]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17298444]; GO_function: GO:0052874 - FMN reductase (NADH) activity [Evidence IEA]; GO_function: GO:0052873 - FMN reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IDA,IMP] [PMID 17298444]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008134 - transcription factor binding [Evidence IDA] [PMID 19029946]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 19709309]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 17298444]; GO_process: GO:0042994 - cytoplasmic sequestering of transcription factor [Evidence IDA] [PMID 19029946]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Lot6p complement(3388717..3389325) Sugiyamaella lignohabitans 30032826 AWJ20_1066 CDS ARP9 NC_031672.1 3389614 3392241 R Component of both the SWI/SNF and RSC chromatin remodeling complexes; actin-related protein involved in transcriptional regulation; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 9844636]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 9726966]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 9844636]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11011149]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA,IDA] [PMID 12183366]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006325 - chromatin organization [Evidence IGI] [PMID 12805231]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IDA] [PMID 17496903]; GO_process: GO:0016584 - nucleosome positioning [Evidence IMP] [PMID 21343911]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9726966]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Arp9p complement(join(3389614..3390938,3391554..3392241)) Sugiyamaella lignohabitans 30032827 AWJ20_1067 CDS AWJ20_1067 NC_031672.1 3392817 3393101 R uncharacterized protein complement(3392817..3393101) Sugiyamaella lignohabitans 30032828 AWJ20_1068 CDS ECO1 NC_031672.1 3394442 3395701 D Acetyltransferase; required for establishment of sister chromatid cohesion; acetylates Mps3p to regulate nuclear organization; modifies Smc3p at replication forks and Mcd1p in response to dsDNA breaks; phosphorylated by three kinases (Cdc28p, Cdc7p, Mck1p) to generate pair of phosphates spaced precisely for recognition by ubiquitin ligase SCF-Cdc4; mutations in human homolog ESCO2 cause Roberts syndrome; relative distribution to nucleus increases upon DNA replication stress; GO_component: GO:0000785 - chromatin [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000790 - nuclear chromatin [Evidence IPI] [PMID 9990856]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16962805]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0016407 - acetyltransferase activity [Evidence IDA] [PMID 11864574]; GO_function: GO:0016407 - acetyltransferase activity [Evidence IDA] [PMID 18614053]; GO_function: GO:0016407 - acetyltransferase activity [Evidence IDA,IMP] [PMID 22593213]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9990856]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 11448778]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 9990856]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IMP] [PMID 19948494]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 11448778]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IGI] [PMID 16934511]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IMP] [PMID 9990855]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IMP] [PMID 9990856]; GO_process: GO:0018393 - internal peptidyl-lysine acetylation [Evidence IDA] [PMID 18614053]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 19948494]; GO_process: GO:0034421 - post-translational protein acetylation [Evidence IEA]; GO_process: GO:0006275 - regulation of DNA replication [Evidence IEA]; GO_process: GO:0006275 - regulation of DNA replication [Evidence IGI] [PMID 9990855]; GO_process: GO:0007088 - regulation of mitosis [Evidence IMP] [PMID 9990855]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IEA]; GO_process: GO:0070058 - tRNA gene clustering [Evidence IMP] [PMID 19948494]; GO_process: GO:0032200 - telomere organization [Evidence IMP] [PMID 19948494]; Eco1p 3394442..3395701 Sugiyamaella lignohabitans 30032829 AWJ20_1069 CDS ABZ1 NC_031672.1 3396981 3399335 R Para-aminobenzoate (PABA) synthase; has similarity to Escherichia coli PABA synthase components PabA and PabB; required for the synthesis of para-aminobenzoic acid, an important intermediate for folate and ubiquinone Q biosynthesis; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]; GO_function: GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IMP,ISS] [PMID 8346682]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016833 - oxo-acid-lyase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0008153 - para-aminobenzoic acid biosynthetic process [Evidence IMP] [PMID 8346682]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]; 4-amino-4-deoxychorismate synthase complement(3396981..3399335) Sugiyamaella lignohabitans 30032830 AWJ20_1070 CDS MRPL27 NC_031672.1 3400047 3400463 D Mitochondrial ribosomal protein of the large subunit; homolog of human Bcl-2 interacting protein BMRP; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 54S ribosomal protein YmL27 3400047..3400463 Sugiyamaella lignohabitans 30032832 AWJ20_1071 CDS AWJ20_1071 NC_031672.1 3402975 3404099 D potential mitochondrial NADH-Ubiquinone Oxidoreductase Complex I subunit similar to N. crassa and mammalian 40kd subunits; allele of CaO19.1682; putative mitochondrial Complex I, 40kd subunit 3402975..3404099 Sugiyamaella lignohabitans 30032833 AWJ20_1072 CDS PIK1 NC_031672.1 3404351 3407488 R Phosphatidylinositol 4-kinase; catalyzes first step in the biosynthesis of phosphatidylinositol-4,5-biphosphate; may control cytokinesis through the actin cytoskeleton; may control nonselective autophagy and mitophagy through trafficking of Atg9p; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10587649]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16365163]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8194527]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 10587649]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16365163]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IEA,IEA]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IMP] [PMID 10587649]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IDA] [PMID 8194527]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IDA] [PMID 8248783]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006661 - phosphatidylinositol biosynthetic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IMP] [PMID 10587649]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 8194527]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 8248783]; GO_process: GO:0048015 - phosphatidylinositol-mediated signaling [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol 4-kinase complement(3404351..3407488) Sugiyamaella lignohabitans 30032834 AWJ20_1073 CDS AWJ20_1073 NC_031672.1 3412715 3415354 R uncharacterized protein complement(3412715..3415354) Sugiyamaella lignohabitans 30032835 AWJ20_1074 CDS VPS62 NC_031672.1 3417223 3418656 D Vacuolar protein sorting (VPS) protein; required for cytoplasm to vacuole targeting of proteins; VPS62 has a paralog, TDA6, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12134085]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps62p 3417223..3418656 Sugiyamaella lignohabitans 30032836 AWJ20_1075 CDS SNF3 NC_031672.1 3419210 3420784 R Plasma membrane low glucose sensor, regulates glucose transport; contains 12 predicted transmembrane segments and a long C-terminal tail required for induction of hexose transporters; also senses fructose and mannose; SNF3 has a paralog, RGT2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2406560]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0005536 - glucose binding [Evidence TAS] [PMID 10477308]; GO_function: GO:0005355 - glucose transmembrane transporter activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0004872 - receptor activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0051594 - detection of glucose [Evidence IGI,IMP] [PMID 8901598]; GO_process: GO:0015755 - fructose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IGI] [PMID 9564039]; GO_process: GO:0015761 - mannose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 18616605]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 10477308]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Snf3p complement(3419210..3420784) Sugiyamaella lignohabitans 30032837 AWJ20_1076 CDS AWJ20_1076 NC_031672.1 3425536 3426597 D Polysialic acid capsule expression protein 3425536..3426597 Sugiyamaella lignohabitans 30032838 AWJ20_1077 CDS AWJ20_1077 NC_031672.1 3427193 3430606 R uncharacterized protein complement(3427193..3430606) Sugiyamaella lignohabitans 30032839 AWJ20_1078 CDS SLI15 NC_031672.1 3431575 3434760 D Subunit of the conserved chromosomal passenger complex (CPC); complex regulates kinetochore-microtubule attachments, activation of the spindle tension checkpoint, and mitotic spindle disassembly; other complex members are Ipl1p, Bir1p, and Nbl1p; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0032133 - chromosome passenger complex [Evidence IDA] [PMID 19158380]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005828 - kinetochore microtubule [Evidence IDA] [PMID 11724818]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 11724818]; GO_component: GO:0051233 - spindle midzone [Evidence IDA] [PMID 12566427]; GO_function: GO:0030295 - protein kinase activator activity [Evidence IMP,IPI] [PMID 10385519]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence TAS] [PMID 11724818]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP,IPI] [PMID 10385519]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 17504936]; GO_process: GO:0032465 - regulation of cytokinesis [Evidence IMP] [PMID 16615892]; Sli15p 3431575..3434760 Sugiyamaella lignohabitans 30032840 AWJ20_1079 CDS CNS1 NC_031672.1 3434860 3436032 R TPR-containing co-chaperone; binds both Hsp82p (Hsp90) and Ssa1p (Hsp70) and stimulates the ATPase activity of SSA1, ts mutants reduce Hsp82p function while over expression suppresses the phenotypes of an HSP82 ts allele and a cpr7 deletion; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 9819421]; GO_function: GO:0030544 - Hsp70 protein binding [Evidence IDA] [PMID 15044454]; GO_function: GO:0051879 - Hsp90 protein binding [Evidence IDA] [PMID 12788914]; GO_process: GO:0006457 - protein folding [Evidence IPI] [PMID 15044454]; GO_process: GO:0006457 - protein folding [Evidence IGI] [PMID 9819421]; Cns1p complement(3434860..3436032) Sugiyamaella lignohabitans 30032841 AWJ20_1080 CDS AWJ20_1080 NC_031672.1 3436422 3438761 R Mediator of RNA polymerase II transcription subunit 12 complement(3436422..3438761) Sugiyamaella lignohabitans 30032843 AWJ20_1081 CDS SRB8 NC_031672.1 3438988 3441453 R Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; involved in glucose repression; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0016592 - mediator complex [Evidence IDA] [PMID 11383511]; GO_component: GO:0016592 - mediator complex [Evidence IDA] [PMID 12200444]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001105 - RNA polymerase II transcription coactivator activity [Evidence IDA,IMP] [PMID 20505076]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16109375]; GO_process: GO:0000411 - positive regulation of transcription by galactose [Evidence IMP] [PMID 15601835]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15601835]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Srb8p complement(3438988..3441453) Sugiyamaella lignohabitans 30032844 AWJ20_1082 CDS AWJ20_1082 NC_031672.1 3442944 3443234 D uncharacterized protein 3442944..3443234 Sugiyamaella lignohabitans 30032845 AWJ20_1083 CDS POL30 NC_031672.1 3443727 3444152 R Proliferating cell nuclear antigen (PCNA); functions as the sliding clamp for DNA polymerase delta; may function as a docking site for other proteins required for mitotic and meiotic chromosomal DNA replication and for DNA repair; GO_component: GO:0043626 - PCNA complex [Evidence IEA]; GO_component: GO:0043626 - PCNA complex [Evidence IPI] [PMID 8001157]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0005657 - replication fork [Evidence IDA] [PMID 12015307]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0030337 - DNA polymerase processivity factor activity [Evidence IEA]; GO_function: GO:0030337 - DNA polymerase processivity factor activity [Evidence IDA] [PMID 18635534]; GO_function: GO:0030337 - DNA polymerase processivity factor activity [Evidence IDA] [PMID 2902631]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 10545450]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16157874]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 16157874]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IGI] [PMID 19264809]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IGI] [PMID 16934511]; GO_process: GO:0006273 - lagging strand elongation [Evidence IDA,IPI] [PMID 7673186]; GO_process: GO:0006272 - leading strand elongation [Evidence IDA] [PMID 1682321]; GO_process: GO:0035753 - maintenance of DNA trinucleotide repeats [Evidence IGI,IMP] [PMID 16079237]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IGI,IMP] [PMID 18245822]; GO_process: GO:0006298 - mismatch repair [Evidence IMP,IPI] [PMID 8858149]; GO_process: GO:0006298 - mismatch repair [Evidence IGI] [PMID 8910404]; GO_process: GO:0006298 - mismatch repair [Evidence IGI] [PMID 9504910]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IGI] [PMID 7516465]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IPI] [PMID 16934511]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 9806417]; GO_process: GO:1902394 - positive regulation of exodeoxyribonuclease activity [Evidence IDA] [PMID 12192046]; GO_process: GO:1903022 - positive regulation of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands [Evidence IDA] [PMID 12192046]; GO_process: GO:0006301 - postreplication repair [Evidence IGI,IMP] [PMID 8790390]; GO_process: GO:0006275 - regulation of DNA replication [Evidence IEA]; proliferating cell nuclear antigen complement(3443727..3444152) Sugiyamaella lignohabitans 30032846 AWJ20_1084 CDS MCM6 NC_031672.1 3445026 3447983 R Protein involved in DNA replication; component of the Mcm2-7 hexameric helicase complex that binds chromatin as a part of the pre-replicative complex; forms a subcomplex with Mcm4p and Mcm7p; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0097373 - MCM core complex [Evidence IDA] [PMID 13679365]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10704410]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704410]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IDA] [PMID 15723534]; GO_function: GO:1990163 - ATP-dependent four-way junction helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0043142 - single-stranded DNA-dependent ATPase activity [Evidence IDA] [PMID 15723534]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IPI] [PMID 9335335]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 13679365]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 15723534]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; MCM DNA helicase complex subunit MCM6 complement(3445026..3447983) Sugiyamaella lignohabitans 30032847 AWJ20_1085 CDS TMA10 NC_031672.1 3449216 3449503 R hypothetical protein that associates with ribosomes; protein abundance increases in response to DNA replication stress; TMA10 has a paralog, STF2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Tma10p complement(3449216..3449503) Sugiyamaella lignohabitans 30032848 AWJ20_1086 CDS CKB2 NC_031672.1 3453443 3453865 D Beta' regulatory subunit of casein kinase 2 (CK2); a Ser/Thr protein kinase with roles in cell growth and proliferation; CK2, comprised of CKA1, CKA2, CKB1 and CKB2, has many substrates including transcription factors and all RNA polymerase; GO_component: GO:0032545 - CURI complex [Evidence IDA] [PMID 17452446]; GO_component: GO:0034456 - UTP-C complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IEA]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IDA] [PMID 8135547]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IEA]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IMP] [PMID 11827175]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IPI] [PMID 8135547]; GO_function: GO:0030291 - protein serine/threonine kinase inhibitor activity [Evidence IDA] [PMID 18265947]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IDA] [PMID 11551505]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 16607517]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16952051]; GO_process: GO:0045859 - regulation of protein kinase activity [Evidence IEA]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IDA] [PMID 11551505]; GO_process: GO:0006359 - regulation of transcription from RNA polymerase III promoter [Evidence IDA] [PMID 11551505]; casein kinase 2 regulatory subunit CKB2 3453443..3453865 Sugiyamaella lignohabitans 30032849 AWJ20_1087 CDS AWJ20_1087 NC_031672.1 3454858 3456588 D uncharacterized protein 3454858..3456588 Sugiyamaella lignohabitans 30032850 AWJ20_1088 CDS ARO8 NC_031672.1 3456975 3458468 R Aromatic aminotransferase I; expression is regulated by general control of amino acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IEA]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IDA] [PMID 19342587]; GO_function: GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0008793 - aromatic-amino-acid:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0008793 - aromatic-amino-acid:2-oxoglutarate aminotransferase activity [Evidence IDA] [PMID 9491082]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO_process: GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]; GO_process: GO:0009072 - aromatic amino acid family metabolic process [Evidence IGI,IMP] [PMID 9491083]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0006571 - tyrosine biosynthetic process [Evidence IEA]; bifunctional 2-aminoadipate transaminase/aromatic-amino-acid:2-oxoglutarate transaminase complement(3456975..3458468) Sugiyamaella lignohabitans 30032851 AWJ20_1089 CDS CDH1 NC_031672.1 3460751 3462055 R Activator of anaphase-promoting complex/cyclosome (APC/C); cell-cycle regulated; directs ubiquitination of cyclins resulting in mitotic exit; targets the APC/C to specific substrates including Cdc20p, Ase1p, Cin8p and Fin1p; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IPI] [PMID 9831566]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12456658]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12456658]; GO_function: GO:0010997 - anaphase-promoting complex binding [Evidence IDA] [PMID 15916961]; GO_function: GO:0030332 - cyclin binding [Evidence IDA] [PMID 11566880]; GO_function: GO:0097027 - ubiquitin-protein transferase activator activity [Evidence IDA] [PMID 19362536]; GO_process: GO:0007092 - activation of mitotic anaphase-promoting complex activity [Evidence IMP] [PMID 9334304]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0010697 - negative regulation of spindle pole body separation [Evidence IGI,IMP] [PMID 16688214]; GO_process: GO:2000600 - positive regulation of cyclin catabolic process [Evidence IDA] [PMID 17178718]; GO_process: GO:0045842 - positive regulation of mitotic metaphase/anaphase transition [Evidence IMP] [PMID 9831566]; GO_process: GO:2000060 - positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 18172166]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; Cdh1p complement(3460751..3462055) Sugiyamaella lignohabitans 30032852 AWJ20_1090 CDS SHS1 NC_031672.1 3464974 3465480 D Component of the septin ring that is required for cytokinesis; septins are GTP-binding proteins that assemble into rod-like hetero-oligomers that can associate with other rods to form filaments; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins; undergoes sumoylation and phosphorylation during mitosis; protein abundance increases in response to DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 17603111]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 14597621]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 18431499]; GO_process: GO:0000915 - actomyosin contractile ring assembly [Evidence IMP] [PMID 17603111]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 17603111]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0032186 - cellular bud neck septin ring organization [Evidence IMP] [PMID 12636916]; GO_process: GO:0010458 - exit from mitosis [Evidence IMP] [PMID 12699621]; GO_process: GO:0000921 - septin ring assembly [Evidence IGI] [PMID 17603111]; septin SHS1 3464974..3465480 Sugiyamaella lignohabitans 30032854 AWJ20_1091 CDS MSW1 NC_031672.1 3465823 3466962 R Mitochondrial tryptophanyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 2999114]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004830 - tryptophan-tRNA ligase activity [Evidence IMP,ISA] [PMID 2999114]; GO_process: GO:0070183 - mitochondrial tryptophanyl-tRNA aminoacylation [Evidence IMP] [PMID 2999114]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]; tryptophan--tRNA ligase MSW1 complement(3465823..3466962) Sugiyamaella lignohabitans 30032855 AWJ20_1092 CDS AWJ20_1092 NC_031672.1 3468062 3468802 D uncharacterized protein 3468062..3468802 Sugiyamaella lignohabitans 30032856 AWJ20_1093 CDS CYC2 NC_031672.1 3468924 3470525 R Mitochondrial peripheral inner membrane protein; contains a FAD cofactor in a domain exposed in the intermembrane space; exhibits redox activity in vitro; likely participates in ligation of heme to acytochromes c and c1 (Cyc1p and Cyt1p); GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 16207709]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 16207709]; GO_process: GO:0018063 - cytochrome c-heme linkage [Evidence IGI] [PMID 14514677]; GO_process: GO:0018063 - cytochrome c-heme linkage [Evidence IGI] [PMID 16207709]; GO_process: GO:0007006 - mitochondrial membrane organization [Evidence IMP] [PMID 11488609]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cyc2p complement(3468924..3470525) Sugiyamaella lignohabitans 30032857 AWJ20_1094 CDS CIA1 NC_031672.1 3471697 3472113 D Component of cytosolic iron-sulfur protein assembly (CIA) machinery; acts at a late step of Fe-S cluster assembly; forms the CIA targeting complex with Cia2p and Met18p that directs Fe-S cluster incorporation into a subset of proteins involved in methionine biosynthesis, DNA replication and repair, transcription, and telomere maintenance; contains WD40 repeats; ortholog of human Ciao1 protein; GO_component: GO:0097361 - CIA complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16314508]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16314508]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA,IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IGI,IMP] [PMID 17937914]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Cia1p 3471697..3472113 Sugiyamaella lignohabitans 30032858 AWJ20_1095 CDS CIA1 NC_031672.1 3472242 3472808 D Component of cytosolic iron-sulfur protein assembly (CIA) machinery; acts at a late step of Fe-S cluster assembly; forms the CIA targeting complex with Cia2p and Met18p that directs Fe-S cluster incorporation into a subset of proteins involved in methionine biosynthesis, DNA replication and repair, transcription, and telomere maintenance; contains WD40 repeats; ortholog of human Ciao1 protein; GO_component: GO:0097361 - CIA complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16314508]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16314508]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA,IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IGI,IMP] [PMID 17937914]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Cia1p 3472242..3472808 Sugiyamaella lignohabitans 30032859 AWJ20_1096 CDS SWD1 NC_031672.1 3472957 3473883 R COMPASS subunit protein SWD1 complement(3472957..3473883) Sugiyamaella lignohabitans 30032860 AWJ20_1097 CDS ESF1 NC_031672.1 3475079 3477085 D Nucleolar protein involved in pre-rRNA processing; depletion causes severely decreased 18S rRNA levels; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 15056729]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IPI] [PMID 14690591]; GO_process: GO:0006364 - rRNA processing [Evidence IMP,IPI] [PMID 15056729]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Esf1p 3475079..3477085 Sugiyamaella lignohabitans 30032861 AWJ20_1098 CDS RTS1 NC_031672.1 3477299 3479747 R B-type regulatory subunit of protein phosphatase 2A (PP2A); Rts1p and Cdc55p are alternative regulatory subunits for PP2A catalytic subunits, Pph21p and Pph22p; PP2A-Rts1p protects cohesin when recruited by Sgo1p to the pericentromere; highly enriched at centromeres in the absence of Cdc55p; required for maintenance of septin ring organization during cytokinesis, for ring disassembly in G1 and for dephosphorylation of septin, Shs1p; homolog of the mammalian B' subunit of PP2A; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12388751]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12636916]; GO_component: GO:0000780 - condensed nuclear chromosome, centromeric region [Evidence IDA] [PMID 16541024]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000776 - kinetochore [Evidence IDA] [PMID 12636916]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12388751]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12636916]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 12388751]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IEA]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IDA] [PMID 9079645]; GO_process: GO:0032186 - cellular bud neck septin ring organization [Evidence IGI,IMP] [PMID 12636916]; GO_process: GO:0034613 - cellular protein localization [Evidence IMP] [PMID 19605686]; GO_process: GO:0051754 - meiotic sister chromatid cohesion, centromeric [Evidence IMP] [PMID 16541024]; GO_process: GO:0031578 - mitotic spindle orientation checkpoint [Evidence IGI] [PMID 19605686]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 19605686]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 22581371]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0031107 - septin ring disassembly [Evidence IMP] [PMID 12636916]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; protein phosphatase 2A regulatory subunit RTS1 complement(join(3477299..3479553,3479726..3479747)) Sugiyamaella lignohabitans 30032862 AWJ20_1099 CDS MYO2 NC_031672.1 3481568 3485965 R Type V myosin motor involved in actin-based transport of cargos; required for the polarized delivery of secretory vesicles, the vacuole, late Golgi elements, peroxisomes, and the mitotic spindle; MYO2 has a paralog, MYO4, that arose from the whole genome duplication; GO_component: GO:0071563 - Myo2p-Vac17p-Vac8p transport complex [Evidence IPI] [PMID 12594460]; GO_component: GO:0032432 - actin filament bundle [Evidence IMP] [PMID 9864365]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8188749]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8188749]; GO_component: GO:0031941 - filamentous actin [Evidence IDA] [PMID 11381095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8978821]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 8188749]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 8188749]; GO_component: GO:0031475 - myosin V complex [Evidence ISS] [PMID 1469047]; GO_component: GO:0016459 - myosin complex [Evidence IEA,IEA]; GO_component: GO:0030133 - transport vesicle [Evidence IDA] [PMID 23079598]; GO_component: GO:0031982 - vesicle [Evidence IDA] [PMID 12456647]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 11381095]; GO_function: GO:0005516 - calmodulin binding [Evidence IEA]; GO_function: GO:0005516 - calmodulin binding [Evidence IDA] [PMID 8294515]; GO_function: GO:0000146 - microfilament motor activity [Evidence IDA] [PMID 11381095]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0048313 - Golgi inheritance [Evidence IMP] [PMID 11285273]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IMP] [PMID 2016335]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IMP,IPI] [PMID 10984058]; GO_process: GO:0007107 - membrane addition at site of cytokinesis [Evidence IEP,IGI,IMP] [PMID 12456647]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI,IMP] [PMID 12391144]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI,IPI] [PMID 15201867]; GO_process: GO:0045033 - peroxisome inheritance [Evidence IMP] [PMID 11733545]; GO_process: GO:0045033 - peroxisome inheritance [Evidence IPI] [PMID 16678774]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0009826 - unidimensional cell growth [Evidence IMP] [PMID 9864365]; GO_process: GO:0000011 - vacuole inheritance [Evidence IGI,IPI] [PMID 12594460]; GO_process: GO:0000011 - vacuole inheritance [Evidence IGI,IMP] [PMID 8978821]; GO_process: GO:0030050 - vesicle transport along actin filament [Evidence IEP,IMP] [PMID 10562281]; GO_process: GO:0030050 - vesicle transport along actin filament [Evidence IEP,IMP] [PMID 9864365]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 2016335]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 9864365]; myosin 2 complement(3481568..3485965) Sugiyamaella lignohabitans 30032863 AWJ20_1100 CDS GCD2 NC_031672.1 3491835 3493391 D Delta subunit of the translation initiation factor eIF2B; the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IGI] [PMID 8336705]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IPI] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IGI] [PMID 8336705]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 8506384]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI] [PMID 8164676]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI,IPI] [PMID 8887689]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IMP] [PMID 9032257]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 8506384]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IMP] [PMID 2038326]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IGI] [PMID 8336705]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0045947 - negative regulation of translational initiation [Evidence IBA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI] [PMID 8164676]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA] [PMID 8506384]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IPI] [PMID 8887689]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 9032257]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; Gcd2p 3491835..3493391 Sugiyamaella lignohabitans 30032866 AWJ20_1101 CDS GCV3 NC_031672.1 3495174 3495728 D H subunit of the mitochondrial glycine decarboxylase complex; glycine decarboxylase is required for the catabolism of glycine to 5,10-methylene-THF; also required for all protein lipoylation; expression is regulated by levels of 5,10-methylene-THF; GO_component: GO:0005960 - glycine cleavage complex [Evidence IEA]; GO_component: GO:0005960 - glycine cleavage complex [Evidence ISA] [PMID 9020168]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19570983]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IMP,ISA] [PMID 9020168]; GO_process: GO:0006546 - glycine catabolic process [Evidence IEA]; GO_process: GO:0006546 - glycine catabolic process [Evidence IMP] [PMID 9020168]; GO_process: GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IGI] [PMID 10871621]; GO_process: GO:0009249 - protein lipoylation [Evidence IMP] [PMID 19570983]; glycine decarboxylase subunit H 3495174..3495728 Sugiyamaella lignohabitans 30032867 AWJ20_1102 CDS AWJ20_1102 NC_031672.1 3497038 3499071 D Similar to 6-phosphofructo-2-kinase enzymes; mRNA expression is repressed by the Rfx1p-Tup1p-Ssn6p repressor complex; YLR345W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IEA,IEA]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence NAS] [PMID 15494396]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA,IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0006003 - fructose 2,6-bisphosphate metabolic process [Evidence IEA]; GO_process: GO:0006003 - fructose 2,6-bisphosphate metabolic process [Evidence NAS] [PMID 15494396]; GO_process: GO:0006000 - fructose metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006110 - regulation of glycolytic process [Evidence NAS] [PMID 15494396]; bifunctional fructose-2,6-bisphosphate 2-phosphatase/6-phosphofructo-2-kinase 3497038..3499071 Sugiyamaella lignohabitans 30032868 AWJ20_1103 CDS FLC3 NC_031672.1 3501440 3504289 R Putative FAD transporter, similar to Flc1p and Flc2p; localized to the ER; FLC3 has a paralog, FLC1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16717099]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9046099]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015230 - FAD transmembrane transporter activity [Evidence ISS] [PMID 16717099]; GO_process: GO:0015883 - FAD transport [Evidence ISS] [PMID 16717099]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 16717099]; GO_process: GO:0006810 - transport [Evidence IEA]; Flc3p complement(3501440..3504289) Sugiyamaella lignohabitans 30032869 AWJ20_1104 CDS BUB3 NC_031672.1 3506365 3507381 R Kinetochore checkpoint WD40 repeat protein; localizes to kinetochores during prophase and metaphase, delays anaphase in the presence of unattached kinetochores; forms complexes with Mad1p-Bub1p and with Cdc20p, binds Mad2p and Mad3p; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IPI] [PMID 12221113]; GO_component: GO:0033597 - mitotic checkpoint complex [Evidence IPI] [PMID 10704439]; GO_component: GO:0033597 - mitotic checkpoint complex [Evidence IDA,IPI] [PMID 11726501]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0044774 - mitotic DNA integrity checkpoint [Evidence IGI] [PMID 16651657]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence TAS] [PMID 9448456]; Bub3p complement(3506365..3507381) Sugiyamaella lignohabitans 30032870 AWJ20_1105 CDS ERG5 NC_031672.1 3508404 3509993 D C-22 sterol desaturase; a cytochrome P450 enzyme that catalyzes the formation of the C-22(23) double bond in the sterol side chain in ergosterol biosynthesis; may be a target of azole antifungal drugs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0000249 - C-22 sterol desaturase activity [Evidence IDA] [PMID 8543054]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 8543054]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 8635732]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; C-22 sterol desaturase 3508404..3509993 Sugiyamaella lignohabitans 30032871 AWJ20_1106 CDS BIO3 NC_031672.1 3512333 3513148 R 7,8-diamino-pelargonic acid aminotransferase (DAPA); catalyzes the second step in the biotin biosynthesis pathway; BIO3 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis; BIO3 and BIO4 were acquired by horizontal gene transfer (HGT) from bacteria; GO_component: GO:0005737 - cytoplasm [Evidence ISS] [PMID 10333520]; GO_function: GO:0004015 - adenosylmethionine-8-amino-7-oxononanoate transaminase activity [Evidence IEA,IEA]; GO_function: GO:0004015 - adenosylmethionine-8-amino-7-oxononanoate transaminase activity [Evidence IDA,ISS] [PMID 10333520]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009102 - biotin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009102 - biotin biosynthetic process [Evidence IDA,IMP] [PMID 10333520]; adenosylmethionine-8-amino-7-oxononanoate transaminase complement(3512333..3513148) Sugiyamaella lignohabitans 30032872 AWJ20_1107 CDS PHO11 NC_031672.1 3514294 3515724 R acid phosphatase PHO11 complement(3514294..3515724) Sugiyamaella lignohabitans 30032873 AWJ20_1108 CDS AWJ20_1108 NC_031672.1 3517634 3518569 D NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 3517634..3518569 Sugiyamaella lignohabitans 30032874 AWJ20_1109 CDS RPC31 NC_031672.1 3521049 3521405 R RNA polymerase III subunit C31; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 2201900]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006384 - transcription initiation from RNA polymerase III promoter [Evidence IMP] [PMID 7835345]; Rpc31p complement(3521049..3521405) Sugiyamaella lignohabitans 30032875 AWJ20_1110 CDS AWJ20_1110 NC_031672.1 3522212 3523411 D SMR domain protein 3522212..3523411 Sugiyamaella lignohabitans 30032877 AWJ20_1111 CDS VBA5 NC_031672.1 3524520 3526265 D Plasma membrane protein of the Major Facilitator Superfamily (MFS); involved in amino acid uptake and drug sensitivity; VBA5 has a paralog, VBA3, that arose from a segmental duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23047103]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015809 - arginine transport [Evidence IGI,IMP] [PMID 23047103]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vba5p 3524520..3526265 Sugiyamaella lignohabitans 30032878 AWJ20_1113 CDS SAM50 NC_031672.1 3528651 3530012 R SAM complex subunit SAM50 complement(3528651..3530012) Sugiyamaella lignohabitans 30032880 AWJ20_1115 CDS AWJ20_1115 NC_031672.1 3535441 3537153 R uncharacterized protein complement(3535441..3537153) Sugiyamaella lignohabitans 30032882 AWJ20_1116 CDS AWJ20_1116 NC_031672.1 3538225 3539193 D uncharacterized protein 3538225..3539193 Sugiyamaella lignohabitans 30032883 AWJ20_1118 CDS ERV1 NC_031672.1 3540364 3540786 D Flavin-linked sulfhydryl oxidase of the mitochondrial IMS; N-terminus is an intrinsically disordered domain that in the cytosol helps target Erv1p to mitochondria, and in the intermembrane space oxidizes Mia40p as part of a disulfide relay system that promotes intermembrane space retention of imported proteins; functional ortholog of human GFER (ALR); GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 11493598]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016971 - flavin-linked sulfhydryl oxidase activity [Evidence IDA] [PMID 10899311]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016972 - thiol oxidase activity [Evidence IEA,IEA]; GO_function: GO:0016972 - thiol oxidase activity [Evidence IMP] [PMID 15989955]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IDA] [PMID 11493598]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 15989955]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP] [PMID 15989955]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP] [PMID 16181637]; Erv1p 3540364..3540786 Sugiyamaella lignohabitans 30032885 AWJ20_1119 CDS VRP1 NC_031672.1 3541015 3542904 R Proline-rich actin-associated protein; involved in cytoskeletal organization and cytokinesis; promotes actin nucleation and endocytosis; related to mammalian Wiskott-Aldrich syndrome protein (WASP)-interacting protein (WIP); GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 9412475]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9412475]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9412475]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0003779 - actin binding [Evidence IPI] [PMID 9412475]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IMP] [PMID 8590801]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI,IMP,IPI] [PMID 9412475]; GO_process: GO:0007015 - actin filament organization [Evidence IPI] [PMID 9412475]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 9412475]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 9742397]; GO_process: GO:0032465 - regulation of cytokinesis [Evidence IMP] [PMID 15941409]; Vrp1p complement(3541015..3542904) Sugiyamaella lignohabitans 30032886 AWJ20_1120 CDS FKS1 NC_031672.1 3544428 3550019 D Catalytic subunit of 1,3-beta-D-glucan synthase; functionally redundant with alternate catalytic subunit Gsc2p; binds to regulatory subunit Rho1p; involved in cell wall synthesis and maintenance; localizes to sites of cell wall remodeling; FKS1 has a paralog, GSC2, that arose from the whole genome duplication; GO_component: GO:0000148 - 1,3-beta-D-glucan synthase complex [Evidence IEA]; GO_component: GO:0000148 - 1,3-beta-D-glucan synthase complex [Evidence IDA] [PMID 7983071]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11856368]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11856368]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8602515]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11856368]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8602515]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11856368]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_function: GO:0003843 - 1,3-beta-D-glucan synthase activity [Evidence IEA,IEA]; GO_function: GO:0003843 - 1,3-beta-D-glucan synthase activity [Evidence IDA,IMP] [PMID 7528927]; GO_function: GO:0003843 - 1,3-beta-D-glucan synthase activity [Evidence IDA] [PMID 7649185]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006075 - (1->3)-beta-D-glucan biosynthetic process [Evidence IEA]; GO_process: GO:0006075 - (1->3)-beta-D-glucan biosynthetic process [Evidence IDA,IMP] [PMID 7528927]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 14593073]; GO_process: GO:0008360 - regulation of cell shape [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 17302939]; 1,3-beta-D-glucan synthase 3544428..3550019 Sugiyamaella lignohabitans 30032888 AWJ20_1121 CDS MSP1 NC_031672.1 3550212 3550871 R Mitochondrial protein involved in mitochondrial protein sorting; putative membrane-spanning ATPase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 8226973]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8226973]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IGI] [PMID 8226973]; Msp1p complement(3550212..3550871) Sugiyamaella lignohabitans 30032889 AWJ20_1122 CDS MSP1 NC_031672.1 3551207 3551539 R Mitochondrial protein involved in mitochondrial protein sorting; putative membrane-spanning ATPase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 8226973]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8226973]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IGI] [PMID 8226973]; Msp1p complement(3551207..3551539) Sugiyamaella lignohabitans 30032890 AWJ20_1124 CDS TPS1 NC_031672.1 3554460 3555593 D Synthase subunit of trehalose-6-P synthase/phosphatase complex; synthesizes the storage carbohydrate trehalose; also found in a monomeric form; expression is induced by the stress response and repressed by the Ras-cAMP pathway; protein abundance increases in response to DNA replication stress and in response to prolonged exposure to boric acid; GO_component: GO:0005946 - alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) [Evidence IDA,IMP] [PMID 1425702]; GO_component: GO:0005946 - alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) [Evidence IGI,IMP,IPI] [PMID 9837904]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0003825 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [Evidence IEA,IEA]; GO_function: GO:0003825 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [Evidence IDA,IMP] [PMID 1425702]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IDA,IMP] [PMID 1425702]; GO_process: GO:0034605 - cellular response to heat [Evidence IDA] [PMID 9660948]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11483159]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IEA]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IDA,IMP] [PMID 1425702]; alpha,alpha-trehalose-phosphate synthase (UDP-forming) TPS1 3554460..3555593 Sugiyamaella lignohabitans 30032892 AWJ20_1125 CDS TRP2 NC_031672.1 3555855 3557420 R Anthranilate synthase; catalyzes the initial step of tryptophan biosynthesis, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp3p; GO_component: GO:0005950 - anthranilate synthase complex [Evidence IPI] [PMID 3881257]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004049 - anthranilate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004049 - anthranilate synthase activity [Evidence IDA] [PMID 3881257]; GO_function: GO:0004049 - anthranilate synthase activity [Evidence IGI,ISS] [PMID 6323449]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016833 - oxo-acid-lyase activity [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 8432699]; anthranilate synthase TRP2 complement(3555855..3557420) Sugiyamaella lignohabitans 30032893 AWJ20_1126 CDS PTC2 NC_031672.1 3559515 3560849 D Type 2C protein phosphatase (PP2C); dephosphorylates Hog1p to limit maximal osmostress induced kinase activity; dephosphorylates Ire1p to downregulate the unfolded protein response; dephosphorylates Cdc28p; inactivates the DNA damage checkpoint; PTC2 has a paralog, PTC3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 10580002]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IGI] [PMID 10747050]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP,IPI] [PMID 9528768]; GO_process: GO:0000173 - inactivation of MAPK activity involved in osmosensory signaling pathway [Evidence IGI] [PMID 11113180]; GO_process: GO:0000173 - inactivation of MAPK activity involved in osmosensory signaling pathway [Evidence IDA,IGI,IMP] [PMID 12477803]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 10580002]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 12477803]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IMP,IPI] [PMID 10580002]; type 2C protein phosphatase PTC2 3559515..3560849 Sugiyamaella lignohabitans 30032894 AWJ20_1127 CDS AWJ20_1127 NC_031672.1 3566732 3567574 R 3'-->5' exonuclease and endonuclease with a possible role in apoptosis; has similarity to mammalian and C. elegans apoptotic nucleases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008296 - 3'-5'-exodeoxyribonuclease activity [Evidence IDA] [PMID 15657035]; GO_function: GO:0016888 - endodeoxyribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IDA] [PMID 15657035]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0006309 - apoptotic DNA fragmentation [Evidence IMP] [PMID 15657035]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 15657035]; 3'-5'-exodeoxyribonuclease complement(3566732..3567574) Sugiyamaella lignohabitans 30032895 AWJ20_1128 CDS OSH7 NC_031672.1 3569761 3571221 R Oxysterol-binding protein; part of family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability; OSH7 has a paralog, OSH6, that arose from the whole genome duplication; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 20008566]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16096648]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20008566]; GO_function: GO:0008142 - oxysterol binding [Evidence ISS] [PMID 11238399]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 15173322]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17004323]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 16096648]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IGI] [PMID 17004323]; GO_process: GO:0016125 - sterol metabolic process [Evidence IGI] [PMID 16096648]; GO_process: GO:0015918 - sterol transport [Evidence IGI] [PMID 16585271]; GO_process: GO:0006810 - transport [Evidence IEA]; oxysterol-binding protein related protein OSH7 complement(3569761..3571221) Sugiyamaella lignohabitans 30032896 AWJ20_1129 CDS HGH1 NC_031672.1 3576445 3577284 D Nonessential hypothetical protein; predicted to be involved in ribosome biogenesis; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; similar to mammalian BRP16 (Brain protein 16); relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Hgh1p 3576445..3577284 Sugiyamaella lignohabitans 30032897 AWJ20_1130 CDS AWJ20_1130 NC_031672.1 3577350 3578324 R top hit is XP_007844384.1 originated in Moniliophthora roreri MCA 2997; membrane transporter complement(3577350..3578324) Sugiyamaella lignohabitans 30032899 AWJ20_1131 CDS DDI2 NC_031672.1 3579369 3580079 R hypothetical protein; expression is induced over 100-fold by DNA damage; induction decreased in rad6 and rad18 mutants; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Ddi2p complement(3579369..3580079) Sugiyamaella lignohabitans 30032900 AWJ20_1132 CDS UGP1 NC_031672.1 3584484 3585989 D UDP-glucose pyrophosphorylase (UGPase); catalyses the reversible formation of UDP-Glc from glucose 1-phosphate and UTP, involved in a wide variety of metabolic pathways, expression modulated by Pho85p through Pho4p; UGP1 has a paralog, YHL012W, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity [Evidence IEA]; GO_function: GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity [Evidence IMP,ISS] [PMID 7588797]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0070569 - uridylyltransferase activity [Evidence IDA] [PMID 22580055]; GO_process: GO:0006078 - (1->6)-beta-D-glucan biosynthetic process [Evidence IMP] [PMID 17531808]; GO_process: GO:0006011 - UDP-glucose metabolic process [Evidence IMP] [PMID 7588797]; GO_process: GO:0006011 - UDP-glucose metabolic process [Evidence IGI,IMP] [PMID 9252577]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IGI,IMP] [PMID 9252577]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IGI] [PMID 9252577]; UTP glucose-1-phosphate uridylyltransferase 3584484..3585989 Sugiyamaella lignohabitans 30032901 AWJ20_1134 CDS RNH1 NC_031672.1 3587510 3588325 R Ribonuclease H1; able to bind double-stranded RNAs and RNA-DNA hybrids; associates with RNAse polymerase I; GO_component: GO:0005622 - intracellular [Evidence TAS] [PMID 7489497]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9759502]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA,IEA]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IDA] [PMID 7489497]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0006401 - RNA catabolic process [Evidence IDA] [PMID 7489497]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Rnh1p complement(3587510..3588325) Sugiyamaella lignohabitans 30032903 AWJ20_1135 CDS YPP1 NC_031672.1 3590197 3592884 D Cargo-transport protein involved in endocytosis; interacts with phosphatidylinositol-4-kinase Stt4p; is required, along with Efr3p, for the assembly and recruitment of multiple copies of the kinase into phosphoinositide kinase (PIK) patches at the plasma membrane; positively regulates Stt4p; GFP-fusion protein localizes to the cytoplasm; YGR198W is an essential gene; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 17576801]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 17576801]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 17576801]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 14690591]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19075114]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0090002 - establishment of protein localization to plasma membrane [Evidence IDA] [PMID 19075114]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IDA,IMP] [PMID 17576801]; GO_process: GO:0006898 - receptor-mediated endocytosis [Evidence IDA] [PMID 17576801]; GO_process: GO:0019236 - response to pheromone [Evidence IDA] [PMID 17576801]; Ypp1p 3590197..3592884 Sugiyamaella lignohabitans 30032904 AWJ20_1136 CDS GAD2 NC_031672.1 3594888 3596303 R top hit is XP_963644.2 originated in Neurospora crassa OR74A; glutamate decarboxylase complement(3594888..3596303) Sugiyamaella lignohabitans 30032905 AWJ20_1137 CDS POL92 NC_031672.1 3597351 3600326 R allele of CaO19.8194; polyprotein of L1-like non-LTR retrotransposon Zorro 3 complement(3597351..3600326) Sugiyamaella lignohabitans 30032906 AWJ20_1139 CDS RAD26 NC_031672.1 3602998 3606579 R Protein involved in transcription-coupled nucleotide excision repair; repairs UV-induced DNA lesions; recruitment to DNA lesions is dependent on an elongating RNA polymerase II; homolog of human CSB protein; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 8702468]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0001208 - histone H2A-H2B dimer displacement [Evidence IMP] [PMID 22199252]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IGI] [PMID 17023424]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 17023424]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 7957102]; DNA-dependent ATPase RAD26 complement(3602998..3606579) Sugiyamaella lignohabitans 30032908 AWJ20_1140 CDS POT1 NC_031672.1 3607747 3608973 D 3-ketoacyl-CoA thiolase with broad chain length specificity; cleaves 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA during beta-oxidation of fatty acids; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 7754706]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA,IMP,ISM] [PMID 8125978]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 19470242]; GO_function: GO:0003988 - acetyl-CoA C-acyltransferase activity [Evidence IEA]; GO_function: GO:0003988 - acetyl-CoA C-acyltransferase activity [Evidence IDA] [PMID 7754706]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12819196]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; acetyl-CoA C-acyltransferase 3607747..3608973 Sugiyamaella lignohabitans 30032910 AWJ20_1141 CDS AWJ20_1141 NC_031672.1 3609156 3610046 R uncharacterized protein complement(3609156..3610046) Sugiyamaella lignohabitans 30032911 AWJ20_1142 CDS AWJ20_1142 NC_031672.1 3610837 3613164 R uncharacterized protein complement(3610837..3613164) Sugiyamaella lignohabitans 30032912 AWJ20_1143 CDS ARO1 NC_031672.1 3614702 3617296 D Pentafunctional arom protein; catalyzes steps 2 through 6 in the biosynthesis of chorismate, which is a precursor to aromatic amino acids; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0004765 - shikimate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004765 - shikimate kinase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence TAS] [PMID 1943992]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; pentafunctional protein ARO1p 3614702..3617296 Sugiyamaella lignohabitans 30032913 AWJ20_1144 CDS AWJ20_1144 NC_031672.1 3618288 3619274 D uncharacterized protein 3618288..3619274 Sugiyamaella lignohabitans 30032914 AWJ20_1145 CDS AWJ20_1145 NC_031672.1 3620188 3621492 D uncharacterized protein 3620188..3621492 Sugiyamaella lignohabitans 30032915 AWJ20_1146 CDS AWJ20_1146 NC_031672.1 3621741 3622838 R uncharacterized protein complement(3621741..3622838) Sugiyamaella lignohabitans 30032916 AWJ20_1147 CDS AWJ20_1147 NC_031672.1 3624846 3626435 R uncharacterized protein complement(3624846..3626435) Sugiyamaella lignohabitans 30032917 AWJ20_1148 CDS AWJ20_1148 NC_031672.1 3624991 3625344 D uncharacterized protein 3624991..3625344 Sugiyamaella lignohabitans 30032918 AWJ20_1149 CDS GAP1 NC_031672.1 3629161 3630783 R General amino acid permease; Gap1p senses the presence of amino acid substrates to regulate localization to the plasma membrane when needed; essential for invasive growth; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 12499351]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15039776]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 15039776]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 9199164]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005771 - multivesicular body [Evidence IMP] [PMID 14523026]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15623581]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15707981]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 6759873]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 15707981]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 6759873]; GO_process: GO:0015846 - polyamine transport [Evidence IMP] [PMID 15707981]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; amino acid permease GAP1 complement(3629161..3630783) Sugiyamaella lignohabitans 30032919 AWJ20_1150 CDS AWJ20_1150 NC_031672.1 3632338 3633720 D uncharacterized protein 3632338..3633720 Sugiyamaella lignohabitans 30032921 AWJ20_1151 CDS FRQ1 NC_031672.1 3633952 3634524 R N-myristoylated calcium-binding protein; may have a role in intracellular signaling through its regulation of the phosphatidylinositol 4-kinase Pik1p; member of the recoverin/frequenin branch of the EF-hand superfamily; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 17908202]; GO_component: GO:0033101 - cellular bud membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence ISS] [PMID 10559922]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 10559922]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0009966 - regulation of signal transduction [Evidence IMP,IPI] [PMID 12477731]; Frq1p complement(3633952..3634524) Sugiyamaella lignohabitans 30032922 AWJ20_1152 CDS AWJ20_1152 NC_031672.1 3635864 3637162 R uncharacterized protein complement(3635864..3637162) Sugiyamaella lignohabitans 30032923 AWJ20_1153 CDS SEC15 NC_031672.1 3638036 3640648 D Essential 113 kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis prior to SNARE-mediated fusion; interacts with and functions as a downstream effector of active, GTP-bound Sec4p, a Rab family GTPase; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 16478783]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 16478783]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000145 - exocyst [Evidence IEA]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 1512289]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 7615633]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 16478783]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0017137 - Rab GTPase binding [Evidence IDA] [PMID 10022848]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 7026045]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 6996832]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Sec15p 3638036..3640648 Sugiyamaella lignohabitans 30032924 AWJ20_1154 CDS BCK1 NC_031672.1 3641606 3642016 R mitogen-activated protein kinase kinase kinase BCK1 complement(3641606..3642016) Sugiyamaella lignohabitans 30032925 AWJ20_1155 CDS BCK1 NC_031672.1 3642186 3644999 R mitogen-activated protein kinase kinase kinase BCK1 complement(3642186..3644999) Sugiyamaella lignohabitans 30032926 AWJ20_1156 CDS AWJ20_1156 NC_031672.1 3645225 3647564 R uncharacterized protein complement(3645225..3647564) Sugiyamaella lignohabitans 30032927 AWJ20_1157 CDS MRPL49 NC_031672.1 3648271 3649008 R Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; mitochondrial 54S ribosomal protein YmL49 complement(3648271..3649008) Sugiyamaella lignohabitans 30032928 AWJ20_1158 CDS FZO1 NC_031672.1 3649470 3652370 D Mitofusin; integral membrane protein involved in mitochondrial outer membrane tethering and fusion; role in mitochondrial genome maintenance; efficient tethering and degradation of Fzo1p requires an intact N-terminal GTPase domain; targeted for destruction by the ubiquitin ligase SCF-Mdm30p and the cytosolic ubiquitin-proteasome system; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 11266460]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 9685359]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 9786948]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11266460]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 19812251]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA] [PMID 16624808]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IEA]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IMP,IPI] [PMID 12808034]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IMP] [PMID 9786948]; GO_process: GO:0051646 - mitochondrion localization [Evidence IGI] [PMID 23341591]; mitofusin 3649470..3652370 Sugiyamaella lignohabitans 30032929 AWJ20_1159 CDS AWJ20_1159 NC_031672.1 3652598 3653233 R uncharacterized protein complement(3652598..3653233) Sugiyamaella lignohabitans 30032930 AWJ20_1160 CDS AWJ20_1160 NC_031672.1 3653524 3654804 R Fungal Genetics Stock Center 12732; Fungal Genetics Stock Center 12731; queuine tRNA-ribosyltransferase complement(3653524..3654804) Sugiyamaella lignohabitans 30032932 AWJ20_1161 CDS ELP4 NC_031672.1 3655196 3656764 D Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex; which is required for modification of wobble nucleosides in tRNA; required for Elongator structural integrity; GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IEA]; GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IDA] [PMID 11689709]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 22343726]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 22343726]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11689709]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Elongator subunit ELP4 3655196..3656764 Sugiyamaella lignohabitans 30032933 AWJ20_1162 CDS MET30 NC_031672.1 3657230 3659446 D F-box protein containing five copies of the WD40 motif; controls cell cycle function, sulfur metabolism, and methionine biosynthesis as part of the ubiquitin ligase complex; interacts with and regulates Met4p, localizes within the nucleus; dissociation of Met30p from SCF complex in response to cadmium stress is regulated by Cdc48p; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 9716410]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0043224 - nuclear SCF ubiquitin ligase complex [Evidence IDA] [PMID 10637232]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10637232]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 15870262]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 15870262]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 9716410]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IMP] [PMID 9716410]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IGI,IPI] [PMID 9499404]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 15870262]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 15870262]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0046685 - response to arsenic-containing substance [Evidence IDA] [PMID 15689486]; GO_process: GO:0046686 - response to cadmium ion [Evidence IDA] [PMID 15689486]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Met30p 3657230..3659446 Sugiyamaella lignohabitans 30032934 AWJ20_1163 CDS CHS2 NC_031672.1 3659662 3662493 R Chitin synthase II; catalyzes transfer of N-acetylglucosamine (GlcNAc) to chitin upon activation of zymogenic form; required for chitin synthesis in the primary septum during cytokinesis; localization regulated by Cdk1p during mitosis; phosphorylation by Dbf2p kinase regulates its dynamics and chitin synthesis during cytokinesis; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA,IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IDA] [PMID 9990311]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IMP] [PMID 11839781]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IDA] [PMID 15772160]; GO_process: GO:0006031 - chitin biosynthetic process [Evidence IEA]; GO_process: GO:0006031 - chitin biosynthetic process [Evidence IMP] [PMID 22573892]; chitin synthase CHS2 complement(3659662..3662493) Sugiyamaella lignohabitans 30032935 AWJ20_1164 CDS SCO1 NC_031672.1 3664753 3665751 D Copper-binding protein of mitochondrial inner membrane; required for cytochrome c oxidase activity and respiration; may function to deliver copper to cytochrome c oxidase; similar to thioredoxins; SCO1 has a paralog, SCO2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 1944230]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005507 - copper ion binding [Evidence IEA]; GO_function: GO:0005507 - copper ion binding [Evidence IDA] [PMID 11546815]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence ISS] [PMID 10954195]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006825 - copper ion transport [Evidence IGI,ISS] [PMID 8662933]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 2835635]; GO_process: GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]; GO_process: GO:0051775 - response to redox state [Evidence ISS] [PMID 15659396]; Sco1p 3664753..3665751 Sugiyamaella lignohabitans 30032936 AWJ20_1165 CDS AIM2 NC_031672.1 3665987 3666875 R protein AIM2 complement(join(3665987..3666774,3666827..3666875)) Sugiyamaella lignohabitans 30032937 AWJ20_1166 CDS YAR1 NC_031672.1 3668445 3668996 D Ankyrin-repeat containing, nucleocytoplasmic shuttling chaperone; prevents aggregation of Rps3p in the cytoplasm, associates with free Rps3p in the cytoplasm and delivers it to the 90S in the nucleus; required for 40S ribosomal subunit export, biogenesis and adaptation to osmotic and oxidative stress; expression repressed by heat shock; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA,IGI] [PMID 22570489]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 22570489]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 15611164]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP,IPI] [PMID 22570489]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 15611164]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IGI,IMP] [PMID 15611164]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IGI,IMP] [PMID 22570489]; Yar1p 3668445..3668996 Sugiyamaella lignohabitans 30032938 AWJ20_1167 CDS COM2 NC_031672.1 3681765 3683477 D Transcription factor that binds IME1 Upstream Activation Signal (UAS)ru; COM2 transcription is regulated by Haa1p, Sok2p and Zap1p transcriptional activators; may bind the IME1 promoter under all growth conditions to negatively regulate its transcription in the absence of a positive regulator that binds more effectively; repressor activity may depend on phosphorylation by PKA; C. albicans homolog (MNL1) plays a role in adaptation to stress; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0008150 - biological_process [Evidence ND]; Com2p 3681765..3683477 Sugiyamaella lignohabitans 30032939 AWJ20_1168 CDS ATG1 NC_031672.1 3686938 3689553 D serine/threonine protein kinase ATG1 3686938..3689553 Sugiyamaella lignohabitans 30032940 AWJ20_1169 CDS NSR1 NC_031672.1 3690408 3691727 D Nucleolar protein that binds nuclear localization sequences; required for pre-rRNA processing and ribosome biogenesis; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 19861225]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 7800479]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence TAS] [PMID 10690410]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence TAS] [PMID 10690410]; Nsr1p 3690408..3691727 Sugiyamaella lignohabitans 30032941 AWJ20_1170 CDS AWJ20_1170 NC_031672.1 3692193 3693962 D uncharacterized protein 3692193..3693962 Sugiyamaella lignohabitans 30032943 AWJ20_1171 CDS UTP22 NC_031672.1 3694014 3697646 R Component of the small-subunit processome; required for nuclear export of tRNAs; may facilitate binding of Utp8p to aminoacylated tRNAs and their delivery to Los1p for export; conserved from yeast to mammals; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0032545 - CURI complex [Evidence IDA] [PMID 17452446]; GO_component: GO:0034456 - UTP-C complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IC] [PMID 15590835]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IMP] [PMID 23194188]; Utp22p complement(3694014..3697646) Sugiyamaella lignohabitans 30032944 AWJ20_1172 CDS YLH47 NC_031672.1 3698294 3699990 D Mitochondrial inner membrane protein; exposed to the mitochondrial matrix; associates with mitochondrial ribosomes; NOT required for respiratory growth; homolog of human Letm1, a protein implicated in Wolf-Hirschhorn syndrome; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA,ISS] [PMID 16476776]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006813 - potassium ion transport [Evidence IGI] [PMID 20197279]; GO_process: GO:0051204 - protein insertion into mitochondrial membrane [Evidence IMP] [PMID 16476776]; GO_process: GO:0015992 - proton transport [Evidence IGI] [PMID 20197279]; Ylh47p join(3698294..3698351,3698438..3699990) Sugiyamaella lignohabitans 30032945 AWJ20_1173 CDS DUT1 NC_031672.1 3700318 3700761 R deoxyuridine triphosphate diphosphatase (dUTPase); catalyzes hydrolysis of dUTP to dUMP and PPi, thereby preventing incorporation of uracil into DNA during replication; critical for the maintenance of genetic stability; also has diphosphatase activity on deoxyinosine triphosphate; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0035870 - dITP diphosphatase activity [Evidence IDA] [PMID 21548881]; GO_function: GO:0004170 - dUTP diphosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004170 - dUTP diphosphatase activity [Evidence IDA,IMP] [PMID 21548881]; GO_function: GO:0004170 - dUTP diphosphatase activity [Evidence IMP] [PMID 8223452]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0035863 - dITP catabolic process [Evidence IDA] [PMID 21548881]; GO_process: GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO_process: GO:0046081 - dUTP catabolic process [Evidence IDA,IMP] [PMID 21548881]; GO_process: GO:0046080 - dUTP metabolic process [Evidence IEA]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IEA]; GO_process: GO:0009213 - pyrimidine deoxyribonucleoside triphosphate catabolic process [Evidence IMP] [PMID 8223452]; bifunctional dITP/dUTP diphosphatase complement(3700318..3700761) Sugiyamaella lignohabitans 30032946 AWJ20_1174 CDS MDM31 NC_031672.1 3704147 3706240 D Mitochondrial protein that may have a role in phospholipid metabolism; inner membrane protein with similarity to Mdm32p; required for normal mitochondrial morphology and inheritance; interacts genetically with MMM1, MMM2, MDM10, MDM12, and MDM34; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 15631992]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 16020778]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IMP] [PMID 15631992]; GO_process: GO:0007005 - mitochondrion organization [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 11907266]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 16020778]; GO_process: GO:1900208 - regulation of cardiolipin metabolic process [Evidence IGI] [PMID 22403410]; Mdm31p 3704147..3706240 Sugiyamaella lignohabitans 30032947 AWJ20_1175 CDS SPP2 NC_031672.1 3706396 3707745 R Essential protein that promotes the first step of splicing; required for the final stages of spliceosome maturation; interacts with Prp2p, which may release Spp2p from the spliceosome following the first cleavage reaction; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IDA] [PMID 7493316]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 7493316]; Spp2p complement(3706396..3707745) Sugiyamaella lignohabitans 30032948 AWJ20_1176 CDS SHE9 NC_031672.1 3708104 3709432 D Protein required for normal mitochondrial morphology; mitochondrial inner membrane protein; may be involved in fission of the inner membrane; forms a homo-oligomeric complex; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 12591915]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007007 - inner mitochondrial membrane organization [Evidence IGI,IMP] [PMID 12591915]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 11907266]; She9p 3708104..3709432 Sugiyamaella lignohabitans 30032949 AWJ20_1177 CDS RPT3 NC_031672.1 3710688 3711962 R ATPase of the 19S regulatory particle of the 26S proteasome; one of ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; substrate of N-acetyltransferase B; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 9584156]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 19843524]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 9724628]; proteasome regulatory particle base subunit RPT3 complement(3710688..3711962) Sugiyamaella lignohabitans 30032950 AWJ20_1178 CDS AWJ20_1178 NC_031672.1 3712513 3713988 R uncharacterized protein complement(3712513..3713988) Sugiyamaella lignohabitans 30032951 AWJ20_1179 CDS SGM1 NC_031672.1 3715461 3718538 D hypothetical protein; required for wild-type growth rate on galactose and mannose; localizes to COPI coated vesicles and the Golgi apparatus; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Sgm1p 3715461..3718538 Sugiyamaella lignohabitans 30032952 AWJ20_1180 CDS XPT1 NC_031672.1 3718860 3719477 R Xanthine-guanine phosphoribosyl transferase; required for xanthine utilization and for optimal utilization of guanine; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004422 - hypoxanthine phosphoribosyltransferase activity [Evidence IGI] [PMID 10217799]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0000310 - xanthine phosphoribosyltransferase activity [Evidence IMP] [PMID 10217799]; GO_process: GO:0032265 - XMP salvage [Evidence IMP] [PMID 10217799]; GO_process: GO:0046100 - hypoxanthine metabolic process [Evidence IGI] [PMID 10217799]; GO_process: GO:0009116 - nucleoside metabolic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; xanthine phosphoribosyltransferase complement(3718860..3719477) Sugiyamaella lignohabitans 30032954 AWJ20_1181 CDS UTP5 NC_031672.1 3720160 3722319 R Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 15489292]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Utp5p complement(3720160..3722319) Sugiyamaella lignohabitans 30032955 AWJ20_1182 CDS NCB2 NC_031672.1 3723730 3724194 D Subunit of a heterodimeric NC2 transcription regulator complex; complex binds to TBP and can repress transcription by preventing preinitiation complex assembly or stimulate activated transcription; homologous to human NC2beta; complex also includes Bur6p; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0017054 - negative cofactor 2 complex [Evidence IDA] [PMID 8948634]; GO_component: GO:0017054 - negative cofactor 2 complex [Evidence IPI] [PMID 9023340]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21976730]; GO_function: GO:0001132 - TBP-class protein binding RNA polymerase II transcription factor activity [Evidence IDA] [PMID 8948634]; GO_function: GO:0001132 - TBP-class protein binding RNA polymerase II transcription factor activity [Evidence IPI] [PMID 9096360]; GO_function: GO:0001129 - TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly [Evidence IMP] [PMID 18048413]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 18703679]; GO_function: GO:0001047 - core promoter binding [Evidence IDA] [PMID 18703679]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IDA] [PMID 8948634]; GO_function: GO:0003714 - transcription corepressor activity [Evidence IGI,IMP] [PMID 10713169]; GO_function: GO:0003714 - transcription corepressor activity [Evidence IDA,IMP] [PMID 9023340]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 18048413]; GO_process: GO:1900446 - negative regulation of tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 9023340]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 10713169]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 8948634]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 9023340]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9096360]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 8948634]; GO_process: GO:0061408 - positive regulation of transcription from RNA polymerase II promoter in response to heat stress [Evidence IMP] [PMID 18048413]; GO_process: GO:0045898 - regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 21976730]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ncb2p 3723730..3724194 Sugiyamaella lignohabitans 30032956 AWJ20_1183 CDS NMD5 NC_031672.1 3724659 3726926 R Karyopherin; a carrier protein involved in nuclear import of proteins; importin beta homolog; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9852143]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852143]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP] [PMID 9755161]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 9852143]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,ISS] [PMID 9755161]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nmd5p complement(3724659..3726926) Sugiyamaella lignohabitans 30032957 AWJ20_1184 CDS NMD5 NC_031672.1 3727154 3727954 R Karyopherin; a carrier protein involved in nuclear import of proteins; importin beta homolog; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9852143]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852143]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP] [PMID 9755161]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 9852143]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,ISS] [PMID 9755161]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nmd5p complement(3727154..3727954) Sugiyamaella lignohabitans 30032958 AWJ20_1185 CDS SMP3 NC_031672.1 3730168 3731964 D Alpha 1,2-mannosyltransferase; involved in glycosyl phosphatidyl inositol (GPI) biosynthesis; required for addition of the fourth, side branching mannose to the GPI core structure; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence TAS] [PMID 11356840]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004584 - dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity [Evidence IMP] [PMID 11356840]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 11356840]; GO_process: GO:0006276 - plasmid maintenance [Evidence IMP] [PMID 2005867]; Smp3p 3730168..3731964 Sugiyamaella lignohabitans 30032959 AWJ20_1186 CDS HIS5 NC_031672.1 3732129 3733115 R Histidinol-phosphate aminotransferase; catalyzes the seventh step in histidine biosynthesis; responsive to general control of amino acid biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA,IEA]; GO_function: GO:0004400 - histidinol-phosphate transaminase activity [Evidence IMP] [PMID 14190241]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IMP] [PMID 14190241]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; histidinol-phosphate transaminase complement(3732129..3733115) Sugiyamaella lignohabitans 30032960 AWJ20_1187 CDS NUP159 NC_031672.1 3734031 3738594 D FG-nucleoporin NUP159 join(3734031..3734087,3734146..3738594) Sugiyamaella lignohabitans 30032961 AWJ20_1188 CDS AWJ20_1188 NC_031672.1 3742949 3743407 D uncharacterized protein 3742949..3743407 Sugiyamaella lignohabitans 30032962 AWJ20_1189 CDS RPB7 NC_031672.1 3745204 3745623 R RNA polymerase II subunit B16; forms two subunit dissociable complex with Rpb4p; the Rpb4p/Rpb7p subcomplex regulates cellular lifespan via an mRNA decay process; involved in recruitment of 3'-end processing factors to transcribing RNA polymerase II complex and in export of mRNA to cytoplasm under stress conditions; also involved in translation initiation; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17056745]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 17875743]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17056745]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA,IMP] [PMID 11087726]; GO_function: GO:0003727 - single-stranded RNA binding [Evidence IDA,IMP] [PMID 11087726]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IPI] [PMID 21074047]; GO_process: GO:0000291 - nuclear-transcribed mRNA catabolic process, exonucleolytic [Evidence IGI] [PMID 17875743]; GO_process: GO:0060213 - positive regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IMP] [PMID 17875743]; GO_process: GO:0045948 - positive regulation of translational initiation [Evidence IMP] [PMID 21074047]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI] [PMID 10082533]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 11087726]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase II subunit RPB7 complement(3745204..3745623) Sugiyamaella lignohabitans 30032963 AWJ20_1190 CDS AWJ20_1190 NC_031672.1 3746735 3747553 D uncharacterized protein 3746735..3747553 Sugiyamaella lignohabitans 30032965 AWJ20_1191 CDS AWJ20_1191 NC_031672.1 3747650 3747970 D uncharacterized protein 3747650..3747970 Sugiyamaella lignohabitans 30032966 AWJ20_1192 CDS AWJ20_1192 NC_031672.1 3748246 3749403 D uncharacterized protein 3748246..3749403 Sugiyamaella lignohabitans 30032967 AWJ20_1193 CDS AIM18 NC_031672.1 3749585 3750481 R hypothetical protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; null mutant displays elevated frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016872 - intramolecular lyase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Aim18p complement(3749585..3750481) Sugiyamaella lignohabitans 30032968 AWJ20_1194 CDS RRB1 NC_031672.1 3757948 3759528 D Nuclear protein involved in early steps of ribosome biogenesis; physically interacts with the ribosomal protein Rpl3p; essential gene; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP,IPI] [PMID 11728313]; Rrb1p 3757948..3759528 Sugiyamaella lignohabitans 30032969 AWJ20_1195 CDS AWJ20_1195 NC_031672.1 3762461 3765967 R uncharacterized protein complement(3762461..3765967) Sugiyamaella lignohabitans 30032970 AWJ20_1196 CDS PEX6 NC_031672.1 3773428 3774606 D peroxin-6 3773428..3774606 Sugiyamaella lignohabitans 30032971 AWJ20_1197 CDS PEX6 NC_031672.1 3774699 3777347 D AAA-peroxin; heterodimerizes with AAA-peroxin Pex1p and participates in the recycling of peroxisomal signal receptor Pex5p from the peroxisomal membrane to the cystosol; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12808025]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA,IMP] [PMID 12808025]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IMP] [PMID 15634331]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8241279]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IMP,IPI] [PMID 15634331]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 16007078]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 16911527]; GO_process: GO:0007031 - peroxisome organization [Evidence IEA]; GO_process: GO:0016562 - protein import into peroxisome matrix, receptor recycling [Evidence IDA,IGI,IMP] [PMID 16007078]; GO_process: GO:0001302 - replicative cell aging [Evidence IGI] [PMID 17465979]; AAA family ATPase peroxin 6 3774699..3777347 Sugiyamaella lignohabitans 30032972 AWJ20_1198 CDS AWJ20_1198 NC_031672.1 3776324 3776563 R uncharacterized protein complement(3776324..3776563) Sugiyamaella lignohabitans 30032973 AWJ20_1199 CDS AWJ20_1199 NC_031672.1 3777909 3778628 D uncharacterized protein 3777909..3778628 Sugiyamaella lignohabitans 30032974 AWJ20_1200 CDS MAM33 NC_031672.1 3779055 3779900 R Acidic protein of the mitochondrial matrix; involved in oxidative phosphorylation; related to the human complement receptor gC1q-R; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 9305894]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 9305894]; Mam33p complement(3779055..3779900) Sugiyamaella lignohabitans 30032977 AWJ20_1201 CDS CLB4 NC_031672.1 3780470 3782260 R B-type cyclin CLB4 complement(3780470..3782260) Sugiyamaella lignohabitans 30032978 AWJ20_1202 CDS AWJ20_1202 NC_031672.1 3791855 3792763 D uncharacterized protein 3791855..3792763 Sugiyamaella lignohabitans 30032979 AWJ20_1203 CDS NSI1 NC_031672.1 3795906 3798137 D RNA polymerase I termination factor; binds to rDNA terminator element, required for efficient Pol I termination; required for rDNA silencing at NTS1; facilities association of Sir2p with NTS1, contributes to rDNA stability and cell longevity; interacts physically with Fob1p and RENT subunits, Sir2p and Net1p; may interact with ribosomes, based on co-purification experiments; Myb-like DNA-binding protein; NSI1 has a paralog, REB1, that arose from the whole genome duplication; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22362748]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 22362748]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 15343339]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 22362748]; GO_process: GO:1900008 - negative regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging [Evidence IMP] [PMID 22362748]; GO_process: GO:0001185 - termination of RNA polymerase I transcription from promoter for nuclear large rRNA transcript [Evidence IDA,IMP] [PMID 22805593]; Nsi1p 3795906..3798137 Sugiyamaella lignohabitans 30032980 AWJ20_1204 CDS AWJ20_1204 NC_031672.1 3798633 3799103 D uncharacterized protein 3798633..3799103 Sugiyamaella lignohabitans 30032981 AWJ20_1205 CDS RPS11A NC_031672.1 3798663 3798896 R Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S11 and bacterial S17; N-terminally propionylated in vivo; RPS11A has a paralog, RPS11B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 6814480]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 16246728]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 8070651]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S11A complement(3798663..3798896) Sugiyamaella lignohabitans 30032982 AWJ20_1206 CDS PBP2 NC_031672.1 3803019 3804206 D RNA binding protein; has similarity to mammalian heterogeneous nuclear RNP K protein, involved in the regulation of telomere position effect and telomere length; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23222640]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15351640]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0010834 - telomere maintenance via telomere shortening [Evidence IGI] [PMID 11739741]; Pbp2p 3803019..3804206 Sugiyamaella lignohabitans 30032983 AWJ20_1207 CDS NQM1 NC_031672.1 3808486 3809680 D sedoheptulose-7-phosphate:D-glyceraldehyde-3- phosphate transaldolase NQM1 join(3808486..3808546,3808782..3809680) Sugiyamaella lignohabitans 30032984 AWJ20_1208 CDS URA4 NC_031672.1 3811863 3812912 D Dihydroorotase; catalyzes the third enzymatic step in the de novo biosynthesis of pyrimidines, converting carbamoyl-L-aspartate into dihydroorotate; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004151 - dihydroorotase activity [Evidence IEA,IEA]; GO_function: GO:0004151 - dihydroorotase activity [Evidence IMP,ISS] [PMID 2897615]; GO_function: GO:0004151 - dihydroorotase activity [Evidence IMP] [PMID 4550660]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0044205 - 'de novo' UMP biosynthetic process [Evidence IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0019856 - pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IMP] [PMID 2897615]; dihydroorotase 3811863..3812912 Sugiyamaella lignohabitans 30032985 AWJ20_1209 CDS AWJ20_1209 NC_031672.1 3812984 3814627 R uncharacterized protein complement(3812984..3814627) Sugiyamaella lignohabitans 30032986 AWJ20_1210 CDS AWJ20_1210 NC_031672.1 3815010 3817226 R uncharacterized protein complement(3815010..3817226) Sugiyamaella lignohabitans 30032988 AWJ20_1211 CDS AWJ20_1211 NC_031672.1 3817713 3819200 D meiotic chromosome segregation protein 3817713..3819200 Sugiyamaella lignohabitans 30032989 AWJ20_1212 CDS AWJ20_1212 NC_031672.1 3819298 3823311 R uncharacterized protein complement(3819298..3823311) Sugiyamaella lignohabitans 30032990 AWJ20_1213 CDS AWJ20_1213 NC_031672.1 3823430 3824857 R Dedicator of cytokinesis protein 4 CRK binding protein complement(3823430..3824857) Sugiyamaella lignohabitans 30032991 AWJ20_1214 CDS OYE2 NC_031672.1 3826412 3827506 R Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN); responsible for geraniol reduction into citronellol during fermentation; homologous to Oye3p with different ligand binding and catalytic properties; may be involved in sterol metabolism, oxidative stress response, and programmed cell death; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17897954]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IDA,ISS] [PMID 8454584]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0018548 - pentaerythritol trinitrate reductase activity [Evidence IEA]; GO_function: GO:0052690 - trichloro-p-hydroquinone reductive dehalogenase activity [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17897954]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Oye2p complement(3826412..3827506) Sugiyamaella lignohabitans 30032992 AWJ20_1215 CDS RPN13 NC_031672.1 3828177 3828689 D Subunit of the 19S regulatory particle of the 26S proteasome lid; acts as a ubiquitin receptor for the proteasome; null mutants accumulate ubiquitinated Gcn4p and display decreased 26S proteasome stability; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 11029046]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 18497817]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11029046]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17499717]; proteasome regulatory particle lid subunit RPN13 3828177..3828689 Sugiyamaella lignohabitans 30032993 AWJ20_1216 CDS NUM1 NC_031672.1 3830841 3838517 D Protein required for nuclear migration; component of the mitochondria-ER-cortex-ancor (MECA); required for the association of mitochondria with the cell cortex and for accurate distribution of mitochondrial network; interacts with Mdm36p to link the ER and motochondria at the cortex; localizes to the mother cell cortex and the bud tip; may mediate interactions of dynein and cytoplasmic microtubules with the cell cortex; GO_component: GO:0005938 - cell cortex [Evidence IEA]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 11121446]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11121446]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005543 - phospholipid binding [Evidence IEA]; GO_function: GO:0015631 - tubulin binding [Evidence IPI] [PMID 11266443]; GO_process: GO:0032065 - cortical protein anchoring [Evidence IEA]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IMP] [PMID 11121446]; GO_process: GO:0000266 - mitochondrial fission [Evidence IMP] [PMID 17336903]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI] [PMID 17336903]; GO_process: GO:0051646 - mitochondrion localization [Evidence IGI,IMP,IPI] [PMID 23341591]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 11121446]; Num1p 3830841..3838517 Sugiyamaella lignohabitans 30032994 AWJ20_1217 CDS PEP4 NC_031672.1 3838762 3840384 R proteinase A complement(3838762..3840384) Sugiyamaella lignohabitans 30032995 AWJ20_1218 CDS HLJ1 NC_031672.1 3843047 3844129 R Co-chaperone for Hsp40p; anchored in the ER membrane; with its homolog Ydj1p promotes ER-associated protein degradation (ERAD) of integral membrane substrates; similar to E. coli DnaJ; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA,ISS] [PMID 12514182]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 15342786]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 15342786]; Hlj1p complement(3843047..3844129) Sugiyamaella lignohabitans 30032996 AWJ20_1219 CDS POL3 NC_031672.1 3846874 3849612 D Catalytic subunit of DNA polymerase delta; required for chromosomal DNA replication during mitosis and meiosis, intragenic recombination, repair of double strand DNA breaks, and DNA replication during nucleotide excision repair (NER); GO_component: GO:0043625 - delta DNA polymerase complex [Evidence IBA]; GO_component: GO:0043625 - delta DNA polymerase complex [Evidence TAS] [PMID 9745046]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005657 - replication fork [Evidence IDA] [PMID 15773893]; GO_function: GO:0008296 - 3'-5'-exodeoxyribonuclease activity [Evidence IBA]; GO_function: GO:0008296 - 3'-5'-exodeoxyribonuclease activity [Evidence IMP] [PMID 1648480]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA,IMP] [PMID 1678279]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 18635534]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 1678279]; GO_process: GO:0045004 - DNA replication proofreading [Evidence IBA]; GO_process: GO:0043137 - DNA replication, removal of RNA primer [Evidence IDA] [PMID 16837458]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IDA] [PMID 17429354]; GO_process: GO:0006287 - base-excision repair, gap-filling [Evidence IBA]; GO_process: GO:0045005 - maintenance of fidelity involved in DNA-dependent DNA replication [Evidence IGI] [PMID 15601866]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0006297 - nucleotide-excision repair, DNA gap filling [Evidence IBA]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IBA]; DNA-directed DNA polymerase delta POL3 3846874..3849612 Sugiyamaella lignohabitans 30032997 AWJ20_1220 CDS HDA1 NC_031672.1 3849789 3852896 R histone deacetylase HDA1 complement(3849789..3852896) Sugiyamaella lignohabitans 30032999 AWJ20_1221 CDS AWJ20_1221 NC_031672.1 3854888 3855181 D uncharacterized protein 3854888..3855181 Sugiyamaella lignohabitans 30033000 AWJ20_1222 CDS VPS52 NC_031672.1 3858054 3860120 D Component of the GARP (Golgi-associated retrograde protein) complex; GARP is required for the recycling of proteins from endosomes to the late Golgi, and for mitosis after DNA damage induced checkpoint arrest; involved in localization of actin and chitin; members of the GARP complex are Vps51p-Vps52p-Vps53p-Vps54p; GO_component: GO:0000938 - GARP complex [Evidence IPI] [PMID 10637310]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 10637310]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12377769]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 10637310]; GO_process: GO:0030029 - actin filament-based process [Evidence IGI] [PMID 9153752]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IDA] [PMID 12686613]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps52p 3858054..3860120 Sugiyamaella lignohabitans 30033001 AWJ20_1223 CDS AWJ20_1223 NC_031672.1 3860658 3861548 D uncharacterized protein 3860658..3861548 Sugiyamaella lignohabitans 30033002 AWJ20_1224 CDS AWJ20_1224 NC_031672.1 3861623 3861919 R Cell division control protein 14 complement(3861623..3861919) Sugiyamaella lignohabitans 30033003 AWJ20_1225 CDS GEM1 NC_031672.1 3862934 3864922 D Outer mitochondrial membrane GTPase, subunit of the ERMES complex; potential regulatory subunit of the ERMES complex that links the ER to mitochondria and may promote inter-organellar calcium and phospholipid exchange as well as coordinating mitochondrial DNA replication and growth; cells lacking Gem1p contain collapsed, globular, or grape-like mitochondria; ortholog of metazoan Miro GTPases; GO_component: GO:0032865 - ERMES complex [Evidence IPI] [PMID 21825164]; GO_component: GO:0032865 - ERMES complex [Evidence IPI] [PMID 21945531]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 15479738]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 15479738]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 21036903]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0019725 - cellular homeostasis [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI,IMP] [PMID 18245340]; GO_process: GO:0055091 - phospholipid homeostasis [Evidence IGI] [PMID 21825164]; GO_process: GO:0010821 - regulation of mitochondrion organization [Evidence IMP] [PMID 21825164]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; ERMES complex Ca(2+)-binding regulatory GTPase GEM1 3862934..3864922 Sugiyamaella lignohabitans 30033004 AWJ20_1226 CDS ZDS1 NC_031672.1 3865185 3869252 R Protein with a role in regulating Swe1p-dependent polarized growth; involved in maintaining Cdc55p in the cytoplasm where it promotes mitotic entry; involved in mitotic exit through Cdc14p regulation; interacts with silencing proteins at telomeres; has a role in Bcy1p localization; implicated in mRNA nuclear export; ZDS1 has a paralog, ZDS2, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 21536748]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8816439]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 11134339]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21536748]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 8816439]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IGI,IMP] [PMID 18762578]; GO_process: GO:0007569 - cell aging [Evidence IMP] [PMID 10662670]; GO_process: GO:0006342 - chromatin silencing [Evidence IMP] [PMID 10662670]; GO_process: GO:0000078 - cytokinesis after mitosis checkpoint [Evidence IGI] [PMID 20980617]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IGI,IMP] [PMID 8816439]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI,IMP,IPI] [PMID 15619606]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0010971 - positive regulation of G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 21536748]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 18762578]; GO_process: GO:0006810 - transport [Evidence IEA]; Zds1p complement(3865185..3869252) Sugiyamaella lignohabitans 30033005 AWJ20_1227 CDS TRM10 NC_031672.1 3870703 3871764 R tRNA methyltransferase; methylates the N-1 position of guanine at position 9 in tRNAs; protein abundance increases in response to DNA replication stress; member of the SPOUT (SpoU-TrmD) methyltransferase family; human ortholog TRMT10A plays a role in the pathogenesis of microcephaly and early onset diabetes; an 18-mer originates from the TRM10 locus; genetic analysis shows the 18-mer is the translation regulator; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0052905 - tRNA (guanine(9)-N(1))-methyltransferase activity [Evidence IEA]; GO_function: GO:0016423 - tRNA (guanine) methyltransferase activity [Evidence IDA] [PMID 12702816]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 12702816]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm10p complement(3870703..3871764) Sugiyamaella lignohabitans 30033006 AWJ20_1228 CDS AGP3 NC_031672.1 3873260 3874612 D Low-affinity amino acid permease; may act to supply the cell with amino acids as nitrogen source in nitrogen-poor conditions; transcription is induced under conditions of sulfur limitation; plays a role in regulating Ty1 transposition; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 14697254]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 14697254]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Agp3p 3873260..3874612 Sugiyamaella lignohabitans 30033007 AWJ20_1229 CDS DOT5 NC_031672.1 3875447 3876175 D Nuclear thiol peroxidase; functions as an alkyl-hydroperoxide reductase during post-diauxic growth; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10681558]; GO_component: GO:0005634 - nucleus [Evidence IDA,ISS] [PMID 2408019]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP,ISS] [PMID 10681558]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 10681558]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Dot5p 3875447..3876175 Sugiyamaella lignohabitans 30033008 AWJ20_1230 CDS NAS2 NC_031672.1 3877828 3878376 D Proteasome-interacting protein; involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP); similar to mammalian proteasomal modulator subunit; non-essential gene; interacts with Rpn4p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11489916]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19446323]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19446323]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IDA,IGI,IMP] [PMID 19446322]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446323]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence ISS] [PMID 10419517]; Nas2p 3877828..3878376 Sugiyamaella lignohabitans 30033010 AWJ20_1231 CDS ASG1 NC_031672.1 3880469 3883471 D Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Asg1p 3880469..3883471 Sugiyamaella lignohabitans 30033011 AWJ20_1232 CDS SRP68 NC_031672.1 3884362 3886197 D Core component of the signal recognition particle (SRP) complex; SRP complex functions in targeting nascent secretory proteins to the endoplasmic reticulum (ER) membrane; relocalizes from cytoplasm to the nuclear periphery upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IDA] [PMID 7925282]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence IPI] [PMID 7925282]; GO_process: GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [Evidence IC] [PMID 7925282]; GO_process: GO:0045047 - protein targeting to ER [Evidence IPI] [PMID 7925282]; Srp68p 3884362..3886197 Sugiyamaella lignohabitans 30033012 AWJ20_1233 CDS REX2 NC_031672.1 3886845 3887246 D 3'-5' RNA exonuclease; involved in 3'-end processing of U4 and U5 snRNAs, 5S and 5.8S rRNAs, and RNase P and RNase MRP RNA; localized to mitochondria and null suppresses escape of mtDNA to nucleus in yme1 yme2 mutants; RNase D exonuclease; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 9933355]; GO_function: GO:0008408 - 3'-5' exonuclease activity [Evidence ISS] [PMID 9396823]; GO_function: GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IMP] [PMID 10716935]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 10716935]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IGI] [PMID 10716935]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 10716935]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI,IMP] [PMID 9933355]; Rex2p 3886845..3887246 Sugiyamaella lignohabitans 30033013 AWJ20_1234 CDS AWJ20_1234 NC_031672.1 3887348 3888355 R uncharacterized protein complement(3887348..3888355) Sugiyamaella lignohabitans 30033014 AWJ20_1235 CDS PEX13 NC_031672.1 3888755 3889957 R Integral peroxisomal membrane protein; required for translocation of peroxisomal matrix proteins; interacts with the PTS1 signal recognition factor Pex5p and the PTS2 signal recognition factor Pex7p; forms a complex with Pex14p and Pex17p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8858166]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8858167]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 10087260]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 12595255]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IEA]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IGI,IPI] [PMID 10087260]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 12595255]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 15798189]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pex13p complement(3888755..3889957) Sugiyamaella lignohabitans 30033015 AWJ20_1236 CDS AWJ20_1236 NC_031672.1 3891121 3892008 D uncharacterized protein 3891121..3892008 Sugiyamaella lignohabitans 30033016 AWJ20_1237 CDS PLC1 NC_031672.1 3893135 3896302 D Phospholipase C; hydrolyzes phosphatidylinositol 4,5-biphosphate (PIP2) to generate the signaling molecules inositol 1,4,5-triphosphate (IP3) and 1,2-diacylglycerol (DAG); involved in regulating many cellular processes; Plc1p and inositol polyphosphates are required for acetyl-CoA homeostasis which regulates global histone acetylation; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 10779349]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 12756538]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IPI] [PMID 10779349]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004435 - phosphatidylinositol phospholipase C activity [Evidence IEA,IEA]; GO_function: GO:0004435 - phosphatidylinositol phospholipase C activity [Evidence IDA] [PMID 15485855]; GO_function: GO:0004435 - phosphatidylinositol phospholipase C activity [Evidence IMP] [PMID 7753023]; GO_function: GO:0004435 - phosphatidylinositol phospholipase C activity [Evidence IDA] [PMID 8395015]; GO_function: GO:0004435 - phosphatidylinositol phospholipase C activity [Evidence IMP] [PMID 9784626]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_process: GO:0032958 - inositol phosphate biosynthetic process [Evidence IMP] [PMID 10390371]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IMP] [PMID 7753023]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IDA] [PMID 8395015]; GO_process: GO:0034501 - protein localization to kinetochore [Evidence IMP] [PMID 19205744]; GO_process: GO:0007165 - signal transduction [Evidence IEA,IEA]; GO_process: GO:0001402 - signal transduction involved in filamentous growth [Evidence IGI,IPI] [PMID 10514491]; phosphatidylinositol phospholipase C 3893135..3896302 Sugiyamaella lignohabitans 30033017 AWJ20_1238 CDS ENP1 NC_031672.1 3896440 3897792 R Protein associated with U3 and U14 snoRNAs; required for pre-rRNA processing and 40S ribosomal subunit synthesis; localized in the nucleus and concentrated in the nucleolus; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9034325]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 16738661]; GO_function: GO:0030515 - snoRNA binding [Evidence IDA] [PMID 12527778]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0006364 - rRNA processing [Evidence IMP,IPI] [PMID 12527778]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Enp1p complement(3896440..3897792) Sugiyamaella lignohabitans 30033018 AWJ20_1239 CDS SRM1 NC_031672.1 3898300 3899823 D Nucleotide exchange factor for Gsp1p; localizes to the nucleus, required for nucleocytoplasmic trafficking of macromolecules; suppressor of the pheromone response pathway; potentially phosphorylated by Cdc28p; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 16365162]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1666302]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1865879]; GO_function: GO:0005087 - Ran guanyl-nucleotide exchange factor activity [Evidence IGI] [PMID 1865879]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IMP] [PMID 2548085]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 11739405]; GO_process: GO:0043087 - regulation of GTPase activity [Evidence IEA]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IMP] [PMID 11739405]; GO_process: GO:0006810 - transport [Evidence IEA]; Srm1p 3898300..3899823 Sugiyamaella lignohabitans 30033019 AWJ20_1240 CDS PEP1 NC_031672.1 3900071 3901687 R Type I transmembrane sorting receptor for multiple vacuolar hydrolases; cycles between the late-Golgi and prevacuolar endosome-like compartments; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 20936498]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence IMP,IPI] [PMID 8187177]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 8187177]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007034 - vacuolar transport [Evidence IMP,IPI] [PMID 8187177]; Pep1p complement(3900071..3901687) Sugiyamaella lignohabitans 30033021 AWJ20_1241 CDS VTH2 NC_031672.1 3901870 3904608 R Putative membrane glycoprotein; has strong similarity to Vth1p and Pep1p/Vps10p; may be involved in vacuolar protein sorting; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence IGI,ISA] [PMID 8636229]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IGI] [PMID 8662642]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IGI] [PMID 8636229]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vth2p complement(3901870..3904608) Sugiyamaella lignohabitans 30033022 AWJ20_1242 CDS CWC25 NC_031672.1 3905169 3906482 D Splicing factor required for the first step of pre-mRNA splicing; binding to the spliceosome requires Prp2p and Yju2p; heat-stable protein; has similarity to S. pombe Cwf25p; GO_component: GO:0005684 - U2-type spliceosomal complex [Evidence IDA] [PMID 11884590]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 14690591]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 19935684]; Cwc25p 3905169..3906482 Sugiyamaella lignohabitans 30033023 AWJ20_1243 CDS AWJ20_1243 NC_031672.1 3906646 3906897 R uncharacterized protein complement(3906646..3906897) Sugiyamaella lignohabitans 30033024 AWJ20_1244 CDS AWJ20_1244 NC_031672.1 3907654 3909381 D uncharacterized protein 3907654..3909381 Sugiyamaella lignohabitans 30033025 AWJ20_1245 CDS CGR1 NC_031672.1 3909581 3910078 R Protein involved in nucleolar integrity and processing of pre-rRNA; has a role in processing rRNA for the 60S ribosome subunit; transcript is induced in response to cytotoxic stress but not genotoxic stress; relocalizes from nucleus to nucleolus upon DNA replication stress; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11116400]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IDA] [PMID 11932453]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP] [PMID 11116400]; Cgr1p complement(3909581..3910078) Sugiyamaella lignohabitans 30033026 AWJ20_1246 CDS AWJ20_1246 NC_031672.1 3910730 3912565 D top hit is XP_002974472.1 originated in Selaginella moellendorffii; C6 transcription factor 3910730..3912565 Sugiyamaella lignohabitans 30033027 AWJ20_1247 CDS RIM101 NC_031672.1 3913807 3915870 R alkaline-responsive transcriptional regulator RIM101 complement(3913807..3915870) Sugiyamaella lignohabitans 30033028 AWJ20_1248 CDS TEF1 NC_031672.1 3918381 3919457 R Translational elongation factor EF-1 alpha; also encoded by TEF1; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes; TEF2-RFP levels increase during replicative aging; may also have a role in tRNA re-export from the nucleus; TEF2 has a paralog, TEF1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 20032305]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005853 - eukaryotic translation elongation factor 1 complex [Evidence ISS] [PMID 3026912]; GO_function: GO:0019003 - GDP binding [Evidence IDA] [PMID 17925388]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 17925388]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA,IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IMP] [PMID 10514524]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IGI,IMP] [PMID 10766739]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IGI,IMP] [PMID 17203074]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA,IEA]; GO_process: GO:0006414 - translational elongation [Evidence IMP] [PMID 10514524]; translation elongation factor EF-1 alpha complement(3918381..3919457) Sugiyamaella lignohabitans 30033029 AWJ20_1249 CDS ASG1 NC_031672.1 3924513 3927276 R Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Asg1p complement(join(3924513..3926960,3927019..3927276)) Sugiyamaella lignohabitans 30033030 AWJ20_1250 CDS FKH2 NC_031672.1 3930628 3933252 D forkhead family transcription factor FKH2 3930628..3933252 Sugiyamaella lignohabitans 30033032 AWJ20_1251 CDS AWJ20_1251 NC_031672.1 3933672 3934385 R uncharacterized protein complement(3933672..3934385) Sugiyamaella lignohabitans 30033033 AWJ20_1252 CDS RPL16A NC_031672.1 3936952 3937293 D Ribosomal 60S subunit protein L16A; N-terminally acetylated, binds 5.8 S rRNA; transcriptionally regulated by Rap1p; homologous to mammalian ribosomal protein L13A and bacterial L13; RPL16A has a paralog, RPL16B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 6337137]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L16A 3936952..3937293 Sugiyamaella lignohabitans 30033034 AWJ20_1253 CDS ZTA1 NC_031672.1 3937661 3938722 R NADPH-dependent quinone reductase; GFP-tagged protein localizes to the cytoplasm and nucleus; has similarity to E. coli quinone oxidoreductase and to human zeta-crystallin; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0032440 - 2-alkenal reductase [NAD(P)] activity [Evidence IDA] [PMID 21276778]; GO_function: GO:0017091 - AU-rich element binding [Evidence IDA] [PMID 17497241]; GO_function: GO:0017091 - AU-rich element binding [Evidence IDA] [PMID 19007762]; GO_function: GO:0003960 - NADPH:quinone reductase activity [Evidence IEA]; GO_function: GO:0003960 - NADPH:quinone reductase activity [Evidence IDA] [PMID 17497241]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 17497241]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Zta1p complement(3937661..3938722) Sugiyamaella lignohabitans 30033035 AWJ20_1254 CDS STB3 NC_031672.1 3943087 3945075 D Ribosomal RNA processing element (RRPE)-binding protein; involved in the glucose-induced transition from quiescence to growth; restricted to nucleus in quiescent cells, released into cytoplasm after glucose repletion; binds Sin3p; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 20385783]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17616518]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 20385783]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA,IMP] [PMID 17616518]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0000432 - positive regulation of transcription from RNA polymerase II promoter by glucose [Evidence IMP] [PMID 17616518]; Stb3p 3943087..3945075 Sugiyamaella lignohabitans 30033036 AWJ20_1255 CDS STM1 NC_031672.1 3945569 3946693 R Protein required for optimal translation under nutrient stress; perturbs association of Yef3p with ribosomes; involved in TOR signaling; binds G4 quadruplex and purine motif triplex nucleic acid; helps maintain telomere structure; protein abundance increases in response to DNA replication stress; serves as a ribosome preservation factor both during quiescence and recovery; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15044472]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 15044472]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 15654430]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 15044472]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IDA] [PMID 15044472]; GO_function: GO:0045142 - triplex DNA binding [Evidence IDA] [PMID 18029617]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 16580682]; GO_process: GO:0043066 - negative regulation of apoptotic process [Evidence IDA] [PMID 11514626]; GO_process: GO:0043558 - regulation of translational initiation in response to stress [Evidence IMP] [PMID 16580682]; GO_process: GO:0000723 - telomere maintenance [Evidence IGI] [PMID 12207228]; GO_process: GO:0006414 - translational elongation [Evidence IGI,IMP] [PMID 19666721]; Stm1p complement(join(3945569..3946417,3946673..3946693)) Sugiyamaella lignohabitans 30033037 AWJ20_1256 CDS PCS60 NC_031672.1 3948715 3950526 D Oxalyl-CoA synthetase; capable of catalyzing conversion of oxalate to oxalyl-CoA; catalyzes first step in pathway of oxalate degradation that functions to protect yeast from inhibitory effects of oxalate; peroxisomal protein that binds mRNA; localizes to both peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid; similar to E. coli long chain acyl-CoA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 8841414]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8841414]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0050203 - oxalate-CoA ligase activity [Evidence IDA,IMP] [PMID 24291261]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0033611 - oxalate catabolic process [Evidence IDA,IMP] [PMID 24291261]; Pcs60p 3948715..3950526 Sugiyamaella lignohabitans 30033038 AWJ20_1257 CDS MRP51 NC_031672.1 3950723 3951658 R Mitochondrial ribosomal protein of the small subunit; MRP51 exhibits genetic interactions with mutations in the COX2 and COX3 mRNA 5'-untranslated leader sequences; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IDA] [PMID 9528754]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9528754]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 9528754]; GO_process: GO:0070124 - mitochondrial translational initiation [Evidence IGI] [PMID 9528754]; mitochondrial 37S ribosomal protein MRP51 complement(3950723..3951658) Sugiyamaella lignohabitans 30033039 AWJ20_1258 CDS RET1 NC_031672.1 3952083 3955532 R Second-largest subunit of RNA polymerase III; RNA polymerase III is responsible for the transcription of tRNA and 5S RNA genes, and other low molecular weight RNAs; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0032549 - ribonucleoside binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IGI] [PMID 2199311]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase III core subunit RET1 complement(3952083..3955532) Sugiyamaella lignohabitans 30033040 AWJ20_1259 CDS ASI1 NC_031672.1 3956847 3959366 D Putative integral membrane E3 ubiquitin ligase; acts with Asi2p and Asi3p to ensure the fidelity of SPS-sensor signalling by maintaining the dormant repressed state of gene expression in the absence of inducing signals; ASI1 has a paralog, ASI3, that arose from the whole genome duplication; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IGI,ISS] [PMID 11454748]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 16735580]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IGI,ISS] [PMID 11454748]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 11454748]; putative ubiquitin-protein ligase ASI1 3956847..3959366 Sugiyamaella lignohabitans 30033041 AWJ20_1260 CDS AWJ20_1260 NC_031672.1 3960119 3961741 D uncharacterized protein 3960119..3961741 Sugiyamaella lignohabitans 30033043 AWJ20_1261 CDS DIT2 NC_031672.1 3962490 3963839 D N-formyltyrosine oxidase; sporulation-specific microsomal enzyme involved in the production of N,N-bisformyl dityrosine required for spore wall maturation, homologous to cytochrome P-450s; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8183942]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA,IMP] [PMID 8183942]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Dit2p 3962490..3963839 Sugiyamaella lignohabitans 30033044 AWJ20_1262 CDS POP1 NC_031672.1 3963894 3966350 R Subunit of both RNase MRP and nuclear RNase P; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs; binds to the RPR1 RNA subunit in RNase P; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005655 - nucleolar ribonuclease P complex [Evidence IDA] [PMID 9620854]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IPI] [PMID 17881380]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IDA] [PMID 9620854]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 23700311]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000171 - ribonuclease MRP activity [Evidence IMP] [PMID 16618965]; GO_function: GO:0004526 - ribonuclease P activity [Evidence IEA,IEA]; GO_function: GO:0004526 - ribonuclease P activity [Evidence IMP] [PMID 16618965]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0034965 - intronic box C/D snoRNA processing [Evidence IDA] [PMID 18713869]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 14729943]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 7926742]; GO_process: GO:0001682 - tRNA 5'-leader removal [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 7926742]; Pop1p complement(3963894..3966350) Sugiyamaella lignohabitans 30033045 AWJ20_1263 CDS AWJ20_1263 NC_031672.1 3967235 3967471 D uncharacterized protein 3967235..3967471 Sugiyamaella lignohabitans 30033046 AWJ20_1264 CDS ALG9 NC_031672.1 3967836 3969572 D Mannosyltransferase, involved in N-linked glycosylation; catalyzes both the transfer of seventh mannose residue on B-arm and ninth mannose residue on the C-arm from Dol-P-Man to lipid-linked oligosaccharides; mutation of the human ortholog causes type 1 congenital disorders of glycosylation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IMP,ISS] [PMID 8692962]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0052926 - dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity [Evidence IEA]; GO_function: GO:0052918 - dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity [Evidence IEA]; GO_function: GO:0004376 - glycolipid mannosyltransferase activity [Evidence IMP] [PMID 15987956]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IMP,ISS] [PMID 8692962]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA,IEA]; GO_process: GO:0006488 - dolichol-linked oligosaccharide biosynthetic process [Evidence IMP] [PMID 15987956]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 8692962]; dolichyl-P-Man:Man(6)GlcNAc(2)-PP-dolichol alpha-1,2-mannosyltransferase 3967836..3969572 Sugiyamaella lignohabitans 30033047 AWJ20_1265 CDS ADE12 NC_031672.1 3969798 3970925 R Adenylosuccinate synthase; catalyzes the first step in synthesis of adenosine monophosphate from inosine 5'monophosphate during purine nucleotide biosynthesis; exhibits binding to single-stranded autonomously replicating (ARS) core sequence; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 8706758]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA,IEA]; GO_function: GO:0004019 - adenylosuccinate synthase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004019 - adenylosuccinate synthase activity [Evidence IDA] [PMID 10417315]; GO_function: GO:0004019 - adenylosuccinate synthase activity [Evidence IMP] [PMID 5807803]; GO_function: GO:0004019 - adenylosuccinate synthase activity [Evidence IDA] [PMID 8706758]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0044208 - 'de novo' AMP biosynthetic process [Evidence IEA]; GO_process: GO:0006167 - AMP biosynthetic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 5807803]; adenylosuccinate synthase complement(3969798..3970925) Sugiyamaella lignohabitans 30033048 AWJ20_1266 CDS PHO13 NC_031672.1 3972371 3973294 D Alkaline phosphatase specific for p-nitrophenyl phosphate; also has protein phosphatase activity; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004035 - alkaline phosphatase activity [Evidence IDA] [PMID 9561742]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA] [PMID 9561742]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 9561742]; Pho13p 3972371..3973294 Sugiyamaella lignohabitans 30033049 AWJ20_1267 CDS PRB1 NC_031672.1 3974167 3975372 D Vacuolar proteinase B (yscB) with H3 N-terminal endopeptidase activity; serine protease of the subtilisin family; involved in protein degradation in the vacuole and required for full protein degradation during sporulation; activity inhibited by Pbi2p; protein abundance increases in response to DNA replication stress; PRB1 has a paralog, YSP3, that arose from the whole genome duplication; GO_component: GO:0005619 - ascospore wall [Evidence IBA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence TAS] [PMID 2674123]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence TAS] [PMID 9529893]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042802 - identical protein binding [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence ISA] [PMID 3325823]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 377296]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 385314]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_process: GO:0009267 - cellular response to starvation [Evidence IMP] [PMID 2674123]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IBA,IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 2674123]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 2674123]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 385314]; proteinase B 3974167..3975372 Sugiyamaella lignohabitans 30033050 AWJ20_1268 CDS BNA3 NC_031672.1 3978026 3979447 R Kynurenine aminotransferase; catalyzes formation of kynurenic acid from kynurenine; potential Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17034789]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17034789]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IDA] [PMID 19342587]; GO_function: GO:0004061 - arylformamidase activity [Evidence IDA] [PMID 18205391]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016212 - kynurenine-oxoglutarate transaminase activity [Evidence IEA]; GO_function: GO:0016212 - kynurenine-oxoglutarate transaminase activity [Evidence IDA,ISS] [PMID 18205391]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0097053 - L-kynurenine catabolic process [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0034276 - kynurenic acid biosynthetic process [Evidence IDA,ISS] [PMID 18205391]; Bna3p complement(3978026..3979447) Sugiyamaella lignohabitans 30033051 AWJ20_1269 CDS FMP21 NC_031672.1 3980505 3980861 D Sdh8p 3980505..3980861 Sugiyamaella lignohabitans 30033052 AWJ20_1270 CDS AWJ20_1270 NC_031672.1 3981387 3983789 R Nucleoporin nup82 complement(3981387..3983789) Sugiyamaella lignohabitans 30033054 AWJ20_1271 CDS UTP23 NC_031672.1 3984623 3985330 D Component of the small subunit processome; involved in 40S ribosomal subunit biogenesis; interacts with snR30 and is required for dissociation of snR30 from large pre-ribosomal particles; has homology to PINc domain protein Fcf1p, although the PINc domain of Utp23p is not required for function; essential protein; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16769905]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA,IPI] [PMID 16769905]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0070181 - small ribosomal subunit rRNA binding [Evidence IDA,IMP] [PMID 24152547]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp23p 3984623..3985330 Sugiyamaella lignohabitans 30033055 AWJ20_1272 CDS AWJ20_1272 NC_031672.1 3985859 3986209 R uncharacterized protein complement(3985859..3986209) Sugiyamaella lignohabitans 30033056 AWJ20_1273 CDS AWJ20_1273 NC_031672.1 3986413 3987684 R Transcription factor atf1 complement(3986413..3987684) Sugiyamaella lignohabitans 30033057 AWJ20_1274 CDS AWJ20_1274 NC_031672.1 3991123 3991623 D uncharacterized protein 3991123..3991623 Sugiyamaella lignohabitans 30033058 AWJ20_1275 CDS YCF1 NC_031672.1 3991788 3995597 R Vacuolar glutathione S-conjugate transporter; member of ATP-binding cassette family; ATPase activity required to support vacuole fusion; forms stable complexes with vacuole fusion machinery; regulates Vam7p recruitment to vacuoles; has role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin, selenodigluthatione, and oxidized glutathione; similar to human cystic fibrosis protein CFTR; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23658021]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8692889]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0015127 - bilirubin transmembrane transporter activity [Evidence IGI,IMP] [PMID 10790694]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 10220408]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12383937]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12755704]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 9217966]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015723 - bilirubin transport [Evidence IGI,IMP] [PMID 10790694]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046686 - response to cadmium ion [Evidence IEA]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 10220408]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 12755704]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 9217966]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 10790694]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 23658021]; ATP-binding cassette glutathione S-conjugate transporter YCF1 complement(3991788..3995597) Sugiyamaella lignohabitans 30033059 AWJ20_1276 CDS ARE2 NC_031672.1 3998109 3999737 D Acyl-CoA:sterol acyltransferase; endoplasmic reticulum enzyme that contributes the major sterol esterification activity in the presence of oxygen; ARE2 has a paralog, ARE1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10672016]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0008374 - O-acyltransferase activity [Evidence IEA]; GO_function: GO:0034736 - cholesterol O-acyltransferase activity [Evidence IEA]; GO_function: GO:0034737 - ergosterol O-acyltransferase activity [Evidence IGI,IMP] [PMID 10672016]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0008204 - ergosterol metabolic process [Evidence IGI,IMP] [PMID 10672016]; Are2p 3998109..3999737 Sugiyamaella lignohabitans 30033060 AWJ20_1277 CDS ATP23 NC_031672.1 4000122 4000826 R Putative metalloprotease of the mitochondrial inner membrane; required for processing of Atp6p; has an additional role in assembly of the F0 sector of the F1F0 ATP synthase complex; substrate of the Mia40p-Erv1p disulfide relay system, and folding is assisted by Mia40p; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 17135290]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 17135288]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0034982 - mitochondrial protein processing [Evidence IMP] [PMID 17135288]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IMP] [PMID 17135288]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 17135290]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; Atp23p complement(4000122..4000826) Sugiyamaella lignohabitans 30033061 AWJ20_1278 CDS AWJ20_1278 NC_031672.1 4001152 4001496 D uncharacterized protein 4001152..4001496 Sugiyamaella lignohabitans 30033062 AWJ20_1279 CDS AWJ20_1279 NC_031672.1 4001527 4001859 D uncharacterized protein 4001527..4001859 Sugiyamaella lignohabitans 30033063 AWJ20_1280 CDS GUF1 NC_031672.1 4001986 4004007 R Mitochondrial matrix GTPase; associates with mitochondrial ribosomes; important for translation under temperature and nutrient stress; may have a role in translational fidelity; similar to bacterial LepA elongation factor; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 18442968]; GO_component: GO:0005761 - mitochondrial ribosome [Evidence IDA] [PMID 18442968]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 16415861]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 8553703]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 18442968]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA,IEA]; GO_process: GO:0045727 - positive regulation of translation [Evidence IEA]; GO_process: GO:0045727 - positive regulation of translation [Evidence IMP] [PMID 18442968]; GO_process: GO:0006412 - translation [Evidence IEA]; GTPase GUF1 complement(4001986..4004007) Sugiyamaella lignohabitans 30033065 AWJ20_1281 CDS RPH1 NC_031672.1 4004847 4007660 R JmjC domain-containing histone demethylase; specifically demethylates H3K36 tri- and dimethyl modification states; associates with actively transcribed (RNAP II) regions in vivo and specifically targets H3K36 in its trimethylation state as its substrate; transcriptional repressor of PHR1; Rph1p phosphorylation during DNA damage is under control of the MEC1-RAD53 pathway; target of stess-induced hormesis; RPH1 has a paralog, GIS1, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 10523651]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001078 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription [Evidence IDA,IMP] [PMID 10523651]; GO_function: GO:0051864 - histone demethylase activity (H3-K36 specific) [Evidence IDA,IMP] [PMID 17369256]; GO_function: GO:0051864 - histone demethylase activity (H3-K36 specific) [Evidence IDA,IMP] [PMID 17371840]; GO_function: GO:0032454 - histone demethylase activity (H3-K9 specific) [Evidence IDA] [PMID 17371840]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA,IMP] [PMID 21296759]; GO_process: GO:0016577 - histone demethylation [Evidence IDA,IMP] [PMID 17369256]; GO_process: GO:0016577 - histone demethylation [Evidence IDA,IMP] [PMID 17371840]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 10523651]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rph1p complement(4004847..4007660) Sugiyamaella lignohabitans 30033066 AWJ20_1282 CDS SAH1 NC_031672.1 4011416 4012759 R S-adenosyl-L-homocysteine hydrolase; catabolizes S-adenosyl-L-homocysteine which is formed after donation of the activated methyl group of S-adenosyl-L-methionine (AdoMet) to an acceptor; regulates cellular lipid homoeostasis by regulating phosphatidylcholine(PC)synthesis and triacylglycerol (TG) levels; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004013 - adenosylhomocysteinase activity [Evidence IEA,IEA]; GO_function: GO:0004013 - adenosylhomocysteinase activity [Evidence ISA] [PMID 15556636]; GO_function: GO:0004013 - adenosylhomocysteinase activity [Evidence IMP] [PMID 18591246]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0019510 - S-adenosylhomocysteine catabolic process [Evidence ISA] [PMID 15556636]; GO_process: GO:0019510 - S-adenosylhomocysteine catabolic process [Evidence IMP] [PMID 18591246]; GO_process: GO:0006555 - methionine metabolic process [Evidence NAS] [PMID 11752249]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA,IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IMP] [PMID 18591246]; GO_process: GO:0006641 - triglyceride metabolic process [Evidence IMP] [PMID 18591246]; adenosylhomocysteinase complement(4011416..4012759) Sugiyamaella lignohabitans 30033067 AWJ20_1283 CDS MDJ1 NC_031672.1 4014497 4015927 D Co-chaperone that stimulates HSP70 protein Ssc1p ATPase activity; involved in protein folding/refolding in the mitochodrial matrix; required for proteolysis of misfolded proteins; member of the HSP40 (DnaJ) family of chaperones; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 8168133]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 15383543]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 9973563]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 8943361]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 8168133]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 7957078]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 10567545]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IMP] [PMID 8168133]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9973563]; GO_process: GO:0009408 - response to heat [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 8603724]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Mdj1p 4014497..4015927 Sugiyamaella lignohabitans 30033068 AWJ20_1284 CDS AWJ20_1284 NC_031672.1 4019282 4021918 D uncharacterized protein 4019282..4021918 Sugiyamaella lignohabitans 30033069 AWJ20_1285 CDS AWJ20_1285 NC_031672.1 4022685 4023509 D uncharacterized protein 4022685..4023509 Sugiyamaella lignohabitans 30033070 AWJ20_1286 CDS AWJ20_1286 NC_031672.1 4037048 4038583 D uncharacterized protein 4037048..4038583 Sugiyamaella lignohabitans 30033071 AWJ20_1287 CDS AWJ20_1287 NC_031672.1 4038996 4040693 D uncharacterized protein 4038996..4040693 Sugiyamaella lignohabitans 30033072 AWJ20_1288 CDS AWJ20_1288 NC_031672.1 4040851 4042032 R uncharacterized protein complement(4040851..4042032) Sugiyamaella lignohabitans 30033073 AWJ20_1289 CDS AWJ20_1289 NC_031672.1 4043574 4045370 D uncharacterized protein 4043574..4045370 Sugiyamaella lignohabitans 30033074 AWJ20_1290 CDS tam14 NC_031672.1 4045445 4046281 R top hit is XP_002839470.1 originated in Tuber melanosporum Mel28; conserved fungal protein; uncharacterized protein complement(4045445..4046281) Sugiyamaella lignohabitans 30033076 AWJ20_1291 CDS KNS1 NC_031672.1 4046866 4049136 R serine/threonine protein kinase KNS1 complement(4046866..4049136) Sugiyamaella lignohabitans 30033077 AWJ20_1292 CDS EAR1 NC_031672.1 4053605 4055299 D Specificity factor required for Rsp5p-dependent ubiquitination; also required for sorting of specific cargo proteins at the multivesicular body; mRNA is targeted to the bud via the mRNA transport system involving She2p; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 14562095]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 18367543]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043328 - protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IGI] [PMID 18367543]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ear1p 4053605..4055299 Sugiyamaella lignohabitans 30033078 AWJ20_1293 CDS AWJ20_1293 NC_031672.1 4056021 4057532 D uncharacterized protein 4056021..4057532 Sugiyamaella lignohabitans 30033079 AWJ20_1294 CDS SHB17 NC_031672.1 4057860 4058531 R Sedoheptulose bisphosphatase involved in riboneogenesis; dephosphorylates sedoheptulose 1,7-bisphosphate, which is converted via the nonoxidative pentose phosphate pathway to ribose-5-phosphate; facilitates the conversion of glycolytic intermediates to pentose phosphate units; also has fructose 1,6-bisphosphatase activity but this is probably not biologically relevant, since deletion does not affect FBP levels; GFP-fusion protein localizes to the cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0050278 - sedoheptulose-bisphosphatase activity [Evidence IEA]; GO_function: GO:0050278 - sedoheptulose-bisphosphatase activity [Evidence IDA,IMP] [PMID 21663798]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0046390 - ribose phosphate biosynthetic process [Evidence IDA,IMP] [PMID 21663798]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Shb17p complement(4057860..4058531) Sugiyamaella lignohabitans 30033080 AWJ20_1295 CDS AWJ20_1295 NC_031672.1 4059134 4059916 R uncharacterized protein complement(4059134..4059916) Sugiyamaella lignohabitans 30033081 AWJ20_1296 CDS STI1 NC_031672.1 4060875 4062587 R Hsp90 cochaperone; interacts with the Ssa group of the cytosolic Hsp70 chaperones and activates Ssa1p ATPase activity; interacts with Hsp90 chaperones and inhibits their ATPase activity; homolog of mammalian Hop; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 12525481]; GO_function: GO:0042030 - ATPase inhibitor activity [Evidence IDA] [PMID 21170051]; GO_function: GO:0030544 - Hsp70 protein binding [Evidence IDA] [PMID 12716905]; GO_function: GO:0051879 - Hsp90 protein binding [Evidence IDA] [PMID 12525481]; GO_function: GO:0051879 - Hsp90 protein binding [Evidence IDA] [PMID 9927435]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_process: GO:0006457 - protein folding [Evidence IGI,IMP] [PMID 8972212]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp90 cochaperone STI1 complement(4060875..4062587) Sugiyamaella lignohabitans 30033082 AWJ20_1297 CDS HSV2 NC_031672.1 4063384 4064709 D Phosphatidylinositol 3,5-bisphosphate-binding protein; plays a role in micronucleophagy; belongs to the PROPPIN family of proteins; predicted to fold as a seven-bladed beta-propeller; displays punctate cytoplasmic localization; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15103325]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 18769150]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 18769150]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 15155809]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IBA]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IBA]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA] [PMID 15103325]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18769150]; GO_process: GO:0042594 - response to starvation [Evidence IBA]; Hsv2p 4063384..4064709 Sugiyamaella lignohabitans 30033083 AWJ20_1298 CDS AWJ20_1298 NC_031672.1 4066094 4066393 D uncharacterized protein 4066094..4066393 Sugiyamaella lignohabitans 30033084 AWJ20_1299 CDS AWJ20_1299 NC_031672.1 4067717 4068472 D uncharacterized protein 4067717..4068472 Sugiyamaella lignohabitans 30033085 AWJ20_1300 CDS AWJ20_1300 NC_031672.1 4068596 4070899 R uncharacterized protein complement(4068596..4070899) Sugiyamaella lignohabitans 30033088 AWJ20_1301 CDS PRP28 NC_031672.1 4071069 4072922 R RNA helicase in the DEAD-box family; involved in RNA isomerization at the 5' splice site; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence TAS] [PMID 9476892]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence TAS] [PMID 9476892]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000354 - cis assembly of pre-catalytic spliceosome [Evidence TAS] [PMID 9476892]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Prp28p complement(4071069..4072922) Sugiyamaella lignohabitans 30033089 AWJ20_1302 CDS AWJ20_1302 NC_031672.1 4073672 4075216 D uncharacterized protein 4073672..4075216 Sugiyamaella lignohabitans 30033090 AWJ20_1303 CDS MPE1 NC_031672.1 4075389 4076822 R Essential conserved subunit of CPF cleavage and polyadenylation factor; plays a role in 3' end formation of mRNA via the specific cleavage and polyadenylation of pre-mRNA, contains a putative RNA-binding zinc knuckle motif; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 11713271]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IC] [PMID 11713271]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA,IGI,IMP,IPI] [PMID 11713271]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA,IGI,IMP,IPI] [PMID 11713271]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Mpe1p complement(4075389..4076822) Sugiyamaella lignohabitans 30033091 AWJ20_1304 CDS TIF35 NC_031672.1 4078616 4079164 R eIF3g subunit of the eukaryotic translation initiation factor 3 (eIF3); subunit of the core complex of eIF3; is essential for translation; stimulates resumption of ribosomal scanning during translation reinitiation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA,IEA]; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IEA,IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9660829]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9671501]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 9671501]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0002188 - translation reinitiation [Evidence IMP] [PMID 20679478]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence IDA] [PMID 9671501]; Tif35p complement(4078616..4079164) Sugiyamaella lignohabitans 30033092 AWJ20_1305 CDS INM2 NC_031672.1 4080306 4081172 D Inositol monophosphatase; involved in biosynthesis of inositol; enzymatic activity requires magnesium ions and is inhibited by lithium and sodium ions; inm1 inm2 double mutant lacks inositol auxotrophy; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IEA]; GO_function: GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IDA,ISA] [PMID 10096091]; GO_function: GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IGI,IMP] [PMID 12593845]; GO_function: GO:0052832 - inositol monophosphate 3-phosphatase activity [Evidence IEA]; GO_function: GO:0052833 - inositol monophosphate 4-phosphatase activity [Evidence IEA]; GO_function: GO:0052834 - inositol monophosphate phosphatase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006021 - inositol biosynthetic process [Evidence IEA]; GO_process: GO:0046855 - inositol phosphate dephosphorylation [Evidence IDA] [PMID 10096091]; GO_process: GO:0046855 - inositol phosphate dephosphorylation [Evidence IGI,IMP] [PMID 12593845]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IEA]; inositol monophosphate 1-phosphatase INM2 4080306..4081172 Sugiyamaella lignohabitans 30033093 AWJ20_1306 CDS AWJ20_1306 NC_031672.1 4083598 4084452 R uncharacterized protein complement(4083598..4084452) Sugiyamaella lignohabitans 30033094 AWJ20_1307 CDS LCB1 NC_031672.1 4086710 4088263 D Component of serine palmitoyltransferase; responsible along with Lcb2p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine; GO_component: GO:0035339 - SPOTS complex [Evidence IDA] [PMID 20182505]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0017059 - serine C-palmitoyltransferase complex [Evidence IMP] [PMID 1556076]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0004758 - serine C-palmitoyltransferase activity [Evidence IEA]; GO_function: GO:0004758 - serine C-palmitoyltransferase activity [Evidence IMP] [PMID 1556076]; GO_function: GO:0004758 - serine C-palmitoyltransferase activity [Evidence IGI] [PMID 8058731]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IMP] [PMID 1556076]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA,IEA]; serine C-palmitoyltransferase LCB1 4086710..4088263 Sugiyamaella lignohabitans 30033095 AWJ20_1308 CDS COX20 NC_031672.1 4088550 4089059 D Mitochondrial inner membrane protein; required for proteolytic processing of Cox2p and its assembly into cytochrome c oxidase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10671482]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 10671482]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 10671482]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IMP] [PMID 10671482]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 10671482]; Cox20p 4088550..4089059 Sugiyamaella lignohabitans 30033096 AWJ20_1309 CDS AWJ20_1309 NC_031672.1 4091592 4092836 D uncharacterized protein 4091592..4092836 Sugiyamaella lignohabitans 30033097 AWJ20_1310 CDS HEM1 NC_031672.1 4093127 4094887 R 5-aminolevulinate synthase; catalyzes the first step in the heme biosynthetic pathway; an N-terminal signal sequence is required for localization to the mitochondrial matrix; expression is regulated by Hap2p-Hap3p; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 3023841]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003870 - 5-aminolevulinate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003870 - 5-aminolevulinate synthase activity [Evidence IMP] [PMID 24173275]; GO_function: GO:0003870 - 5-aminolevulinate synthase activity [Evidence IMP] [PMID 323256]; GO_function: GO:0003870 - 5-aminolevulinate synthase activity [Evidence IDA] [PMID 6381051]; GO_function: GO:0003870 - 5-aminolevulinate synthase activity [Evidence IMP] [PMID 7035824]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 323256]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 7035824]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; GO_process: GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]; 5-aminolevulinate synthase complement(4093127..4094887) Sugiyamaella lignohabitans 30033099 AWJ20_1311 CDS AWJ20_1311 NC_031672.1 4096597 4097343 D uncharacterized protein 4096597..4097343 Sugiyamaella lignohabitans 30033100 AWJ20_1312 CDS AWJ20_1312 NC_031672.1 4097536 4099629 R uncharacterized protein complement(4097536..4099629) Sugiyamaella lignohabitans 30033101 AWJ20_1313 CDS NTE1 NC_031672.1 4100698 4105101 D Serine esterase; homolog of human neuropathy target esterase (NTE); Nte1p-mediated phosphatidylcholine turnover influences transcription factor Opi1p localization, affecting transcriptional regulation of phospholipid biosynthesis genes; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15044461]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IEA,IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IDA] [PMID 15044461]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0034638 - phosphatidylcholine catabolic process [Evidence IMP] [PMID 15044461]; GO_process: GO:0046470 - phosphatidylcholine metabolic process [Evidence IEA]; GO_process: GO:0071071 - regulation of phospholipid biosynthetic process [Evidence IMP] [PMID 19841481]; Nte1p 4100698..4105101 Sugiyamaella lignohabitans 30033102 AWJ20_1314 CDS MRPL4 NC_031672.1 4106316 4107185 D Mitochondrial ribosomal protein of the large subunit; homolog of prokaryotic L29 ribosomal protein; located at the ribosomal tunnel exit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 20404317]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 3060376]; GO_component: GO:0005761 - mitochondrial ribosome [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 20404317]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 3060376]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 20404317]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 7828914]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL4 4106316..4107185 Sugiyamaella lignohabitans 30033103 AWJ20_1315 CDS IMP2 NC_031672.1 4107272 4107805 R Catalytic subunit of mitochondrial inner membrane peptidase complex; required for maturation of mitochondrial proteins of the intermembrane space; complex contains two catalytic subunits (Imp1p and Imp2p that differ in substrate specificity), and Som1p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0042720 - mitochondrial inner membrane peptidase complex [Evidence IPI] [PMID 8132591]; GO_component: GO:0042720 - mitochondrial inner membrane peptidase complex [Evidence IPI] [PMID 8266095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0004175 - endopeptidase activity [Evidence IDA] [PMID 8132591]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 8266095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_process: GO:0006627 - protein processing involved in protein targeting to mitochondrion [Evidence IMP] [PMID 8266095]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Imp2p complement(4107272..4107805) Sugiyamaella lignohabitans 30033104 AWJ20_1316 CDS RRP42 NC_031672.1 4109165 4110049 R Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp42p (EXOSC7); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9390555]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IC] [PMID 10465791]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IMP] [PMID 10508172]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Rrp42p complement(4109165..4110049) Sugiyamaella lignohabitans 30033105 AWJ20_1317 CDS AWJ20_1317 NC_031672.1 4110418 4111179 D EF-hand superfamily Ca2+modulated protein 4110418..4111179 Sugiyamaella lignohabitans 30033106 AWJ20_1318 CDS ERV25 NC_031672.1 4111348 4111998 R Member of the p24 family involved in ER to Golgi transport; role in misfolded protein quality control; forms a heterotrimeric complex with Erp1, Erp2p, and Emp24; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Erv25p complement(4111348..4111998) Sugiyamaella lignohabitans 30033107 AWJ20_1319 CDS ARB1 NC_031672.1 4113190 4115022 D ATPase of the ATP-binding cassette (ABC) family; involved in 40S and 60S ribosome biogenesis, has similarity to Gcn20p; shuttles from nucleus to cytoplasm, physically interacts with Tif6p, Lsg1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16260602]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042624 - ATPase activity, uncoupled [Evidence IMP] [PMID 16260602]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IMP] [PMID 16260602]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP] [PMID 16260602]; ATP-binding cassette family ATPase ARB1 4113190..4115022 Sugiyamaella lignohabitans 30033108 AWJ20_1320 CDS TRM3 NC_031672.1 4115275 4118685 R 2'-O-ribose methyltransferase; catalyzes the ribose methylation of the guanosine nucleotide at position 18 of tRNAs; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008173 - RNA methyltransferase activity [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016423 - tRNA (guanine) methyltransferase activity [Evidence IDA] [PMID 9917067]; GO_function: GO:0009020 - tRNA (guanosine-2'-O-)-methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 9917067]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm3p complement(4115275..4118685) Sugiyamaella lignohabitans 30033110 AWJ20_1321 CDS KIP3 NC_031672.1 4120177 4121904 D Kinesin-related antiparallel sliding motor protein involved in mitotic spindle positioning; sliding activity promotes bipolar spindle assembly and maintenance of genome stability; also inhibits spindle elongation and promotes spindle disassembly in late anaphase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 9693366]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IDA] [PMID 9693366]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906145]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906148]; GO_function: GO:0070463 - tubulin-dependent ATPase activity [Evidence IDA] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IMP] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 23851487]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 9813090]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IGI,IMP] [PMID 10525539]; GO_process: GO:0031115 - negative regulation of microtubule polymerization [Evidence IMP] [PMID 24616221]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 9693366]; GO_process: GO:0070462 - plus-end specific microtubule depolymerization [Evidence IDA] [PMID 16906145]; GO_process: GO:0070462 - plus-end specific microtubule depolymerization [Evidence IDA] [PMID 16906148]; GO_process: GO:0032888 - regulation of mitotic spindle elongation [Evidence IMP] [PMID 24616221]; GO_process: GO:0090307 - spindle assembly involved in mitosis [Evidence IMP] [PMID 23851487]; tubulin-dependent ATPase KIP3 4120177..4121904 Sugiyamaella lignohabitans 30033111 AWJ20_1322 CDS NCS6 NC_031672.1 4125665 4126972 R Protein required for uridine thiolation of Gln, Lys, and Glu tRNAs; required for the thiolation of uridine at the wobble position of Gln, Lys, and Glu tRNAs; has a role in urmylation and in invasive and pseudohyphal growth; inhibits replication of Brome mosaic virus in S. cerevisiae; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18664566]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IEA,IEA,IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 19145231]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IMP] [PMID 14551258]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; GO_process: GO:0034227 - tRNA thio-modification [Evidence IEA,IEA]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 18664566]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19145231]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19151091]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IEA,IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 17592039]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Ncs6p complement(4125665..4126972) Sugiyamaella lignohabitans 30033112 AWJ20_1323 CDS AWJ20_1323 NC_031672.1 4127305 4127847 D uncharacterized protein 4127305..4127847 Sugiyamaella lignohabitans 30033113 AWJ20_1324 CDS FIP1 NC_031672.1 4128001 4128849 R Subunit of cleavage polyadenylation factor (CPF); interacts directly with poly(A) polymerase (Pap1p) to regulate its activity; bridging factor that links Pap1p and the CPF complex via Yth1p; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP] [PMID 11238938]; GO_function: GO:0030674 - protein binding, bridging [Evidence IGI,IMP] [PMID 21282348]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 7736590]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Fip1p complement(4128001..4128849) Sugiyamaella lignohabitans 30033114 AWJ20_1325 CDS CEG1 NC_031672.1 4129887 4130876 D Guanylyltransferase involved in mRNA 5' capping; subunit of the mRNA capping enzyme, which is a heterotetramer composed of two molecules of Ceg1p and a homodimer of Cet1p, the mRNA 5?-triphosphatase subunit; nuclear import of Ceg1p requires interaction with Cet1p; mammalian capping enzyme is a single bifunctional polypeptide; GO_component: GO:0031533 - mRNA cap methyltransferase complex [Evidence IEA]; GO_component: GO:0031533 - mRNA cap methyltransferase complex [Evidence IGI,IPI] [PMID 9710603]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 9832501]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0004484 - mRNA guanylyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004484 - mRNA guanylyltransferase activity [Evidence IMP] [PMID 8718687]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IEA,IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IMP] [PMID 8718687]; GO_process: GO:0006397 - mRNA processing [Evidence IEA,IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 15226422]; Ceg1p 4129887..4130876 Sugiyamaella lignohabitans 30033115 AWJ20_1326 CDS RSM23 NC_031672.1 4131219 4132574 D Mitochondrial ribosomal protein of the small subunit; has similarity to mammalian apoptosis mediator proteins; null mutation prevents induction of apoptosis by overproduction of metacaspase Mca1p; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; mitochondrial 37S ribosomal protein RSM23 4131219..4132574 Sugiyamaella lignohabitans 30033116 AWJ20_1327 CDS FLR1 NC_031672.1 4135843 4136688 D Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs; expression induced in cells treated with the mycotoxin patulin; relocalizes from nucleus to plasma membrane upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10903515]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015244 - fluconazole transporter activity [Evidence ISS] [PMID 9235926]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI,IMP] [PMID 10572257]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI] [PMID 9235926]; GO_process: GO:0015893 - drug transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9235926]; GO_process: GO:0006810 - transport [Evidence IEA]; Flr1p 4135843..4136688 Sugiyamaella lignohabitans 30033117 AWJ20_1328 CDS FLR1 NC_031672.1 4136764 4137609 D Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs; expression induced in cells treated with the mycotoxin patulin; relocalizes from nucleus to plasma membrane upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10903515]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015244 - fluconazole transporter activity [Evidence ISS] [PMID 9235926]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI,IMP] [PMID 10572257]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI] [PMID 9235926]; GO_process: GO:0015893 - drug transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9235926]; GO_process: GO:0006810 - transport [Evidence IEA]; Flr1p 4136764..4137609 Sugiyamaella lignohabitans 30033118 AWJ20_1329 CDS ROG1 NC_031672.1 4138486 4139997 D Protein with putative serine active lipase domain; ROG1 has a paralog, YDL109C, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0016298 - lipase activity [Evidence NAS] [PMID 10341423]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IMP] [PMID 10341423]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; putative lipase ROG1 4138486..4139997 Sugiyamaella lignohabitans 30033119 AWJ20_1330 CDS AWJ20_1330 NC_031672.1 4141009 4143294 R uncharacterized protein complement(4141009..4143294) Sugiyamaella lignohabitans 30033121 AWJ20_1331 CDS MRPS9 NC_031672.1 4146293 4147312 D Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein MRPS9 4146293..4147312 Sugiyamaella lignohabitans 30033122 AWJ20_1332 CDS MDM20 NC_031672.1 4148024 4150468 R Non-catalytic subunit of the NatB N-terminal acetyltransferase; NatB catalyzes N-acetylation of proteins with specific N-terminal sequences; involved in mitochondrial inheritance and actin assembly; GO_component: GO:0031416 - NatB complex [Evidence IDA] [PMID 12783868]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IMP] [PMID 12783868]; GO_process: GO:0017196 - N-terminal peptidyl-methionine acetylation [Evidence IGI,IMP] [PMID 12783868]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IMP] [PMID 9105043]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI,IMP] [PMID 9105043]; Mdm20p complement(4148024..4150468) Sugiyamaella lignohabitans 30033123 AWJ20_1333 CDS BRX1 NC_031672.1 4150873 4151769 D Nucleolar protein; constituent of 66S pre-ribosomal particles; depletion leads to defects in rRNA processing and a block in the assembly of large ribosomal subunits; possesses a sigma(70)-like RNA-binding motif; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IPI] [PMID 11864607]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0008097 - 5S rRNA binding [Evidence IPI] [PMID 11864606]; GO_function: GO:0042134 - rRNA primary transcript binding [Evidence IPI] [PMID 11864606]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 11864607]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Brx1p 4150873..4151769 Sugiyamaella lignohabitans 30033124 AWJ20_1334 CDS AWJ20_1334 NC_031672.1 4153107 4155878 D serine/threonine-protein kinase Sgk2 4153107..4155878 Sugiyamaella lignohabitans 30033125 AWJ20_1335 CDS TRS31 NC_031672.1 4159102 4159875 D Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990070 - TRAPPI protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990072 - TRAPPIII protein complex [Evidence IDA] [PMID 20375281]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 17110339]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 10727015]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Trs31p 4159102..4159875 Sugiyamaella lignohabitans 30033126 AWJ20_1336 CDS ARD1 NC_031672.1 4160168 4160752 R Subunit of protein N-terminal acetyltransferase NatA; NatA is comprised of Nat1p, Ard1p, and Nat5p; acetylates many proteins and thus affects telomeric silencing, cell cycle, heat-shock resistance, mating, and sporulation; human Ard1p levels are elevated in cancer cells; protein abundance increases in response to DNA replication stress; GO_component: GO:0031415 - NatA complex [Evidence IDA] [PMID 14517307]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IDA] [PMID 14517307]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IDA,IMP] [PMID 2551674]; GO_function: GO:0061607 - peptide alpha-N-propionyltransferase activity [Evidence IMP] [PMID 23043182]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006474 - N-terminal protein amino acid acetylation [Evidence IDA,IMP] [PMID 2551674]; GO_process: GO:0061606 - N-terminal protein amino acid propionylation [Evidence IMP] [PMID 23043182]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 17652096]; Ard1p complement(4160168..4160752) Sugiyamaella lignohabitans 30033127 AWJ20_1337 CDS UBA3 NC_031672.1 4161704 4162756 D Protein that activates Rub1p (NEDD8) before neddylation; acts together with Ula1p; may play a role in protein degradation; GFP-fusion protein localizes to the cytoplasm in a punctate pattern; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019781 - NEDD8 activating enzyme activity [Evidence IDA,ISS] [PMID 9545234]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008641 - small protein activating enzyme activity [Evidence IEA]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0045116 - protein neddylation [Evidence IEA]; GO_process: GO:0045116 - protein neddylation [Evidence IDA,IMP,ISS] [PMID 9545234]; NEDD8-activating protein UBA3 4161704..4162756 Sugiyamaella lignohabitans 30033128 AWJ20_1338 CDS VPS33 NC_031672.1 4162897 4165218 R tethering complex ATP-binding subunit VPS33 complement(4162897..4165218) Sugiyamaella lignohabitans 30033129 AWJ20_1339 CDS AWJ20_1339 NC_031672.1 4168531 4169757 D uncharacterized protein 4168531..4169757 Sugiyamaella lignohabitans 30033130 AWJ20_1340 CDS AWJ20_1340 NC_031672.1 4170447 4170833 R uncharacterized protein complement(4170447..4170833) Sugiyamaella lignohabitans 30033132 AWJ20_1341 CDS GCN5 NC_031672.1 4171172 4173193 D Catalytic subunit of ADA and SAGA histone acetyltransferase complexes; modifies N-terminal lysines on histones H2B and H3; acetylates Rsc4p, a subunit of the RSC chromatin-remodeling complex, altering replication stress tolerance; relocalizes to the cytosol in response to hypoxia; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; greater involvement in repression of RNAPII-dependent transcription than in activation; GO_component: GO:0005671 - Ada2/Gcn5/Ada3 transcription activator complex [Evidence IPI] [PMID 10490601]; GO_component: GO:0005671 - Ada2/Gcn5/Ada3 transcription activator complex [Evidence IDA] [PMID 7862114]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9224714]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 18039853]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0010484 - H3 histone acetyltransferase activity [Evidence IDA,IGI,IMP] [PMID 18458063]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 8601308]; GO_function: GO:0070577 - lysine-acetylated histone binding [Evidence IDA] [PMID 20126658]; GO_function: GO:0003713 - transcription coactivator activity [Evidence TAS] [PMID 15075257]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IGI,IMP] [PMID 18458063]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 9042963]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 19822662]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 11867538]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; histone acetyltransferase GCN5 4171172..4173193 Sugiyamaella lignohabitans 30033133 AWJ20_1342 CDS PUP2 NC_031672.1 4173466 4173678 R Alpha 5 subunit of the 20S proteasome; involved in ubiquitin-dependent catabolism; human homolog is subunit zeta; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 9087403]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 5 complement(4173466..4173678) Sugiyamaella lignohabitans 30033134 AWJ20_1343 CDS SPC97 NC_031672.1 4175462 4177699 D Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000928 - gamma-tubulin small complex, spindle pole body [Evidence IPI] [PMID 9384578]; GO_component: GO:0005822 - inner plaque of spindle pole body [Evidence IDA] [PMID 9215630]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005815 - microtubule organizing center [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005824 - outer plaque of spindle pole body [Evidence IDA] [PMID 9215630]; GO_component: GO:0000922 - spindle pole [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 22842922]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9215630]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IEA]; GO_process: GO:0007020 - microtubule nucleation [Evidence TAS] [PMID 9153752]; Spc97p 4175462..4177699 Sugiyamaella lignohabitans 30033135 AWJ20_1345 CDS RAD24 NC_031672.1 4179014 4181008 D Checkpoint protein; involved in the activation of the DNA damage and meiotic pachytene checkpoints; subunit of a clamp loader that loads Rad17p-Mec3p-Ddc1p onto DNA; homolog of human and S. pombe Rad17 protein; GO_component: GO:0031389 - Rad17 RFC-like complex [Evidence IDA] [PMID 12604797]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 10660302]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 12604797]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 9564050]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 11267834]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 10511543]; Rad24p 4179014..4181008 Sugiyamaella lignohabitans 30033137 AWJ20_1346 CDS AWJ20_1346 NC_031672.1 4181201 4181968 R Glutathione-dependent oxidoreductase; hydroperoxide and superoxide-radical responsive; monothiol glutaredoxin subfamily member along with Grx4p and Grx5p; protects cells from oxidative damage; with Grx4p, binds to Aft1p in iron-replete conditions, promoting its dissociation from promoters; evidence exists indicating that the translation start site is not Met1 as currently annotated, but rather Met36; GRX3 has a paralog, GRX4, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18281282]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15456753]; GO_component: GO:0005634 - nucleus [Evidence IGI,IPI] [PMID 17074835]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IPI] [PMID 23045394]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence IGI,IMP,ISS] [PMID 10567543]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 20889785]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IGI,IPI] [PMID 17074835]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI,IMP] [PMID 10567543]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 17074835]; GO_process: GO:2000678 - negative regulation of transcription regulatory region DNA binding [Evidence IMP] [PMID 23045394]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; monothiol glutaredoxin GRX3 complement(4181201..4181968) Sugiyamaella lignohabitans 30033138 AWJ20_1347 CDS AWJ20_1347 NC_031672.1 4182576 4184096 R uncharacterized protein complement(4182576..4184096) Sugiyamaella lignohabitans 30033139 AWJ20_1348 CDS NGG1 NC_031672.1 4186945 4189317 D histone acetyltransferase NGG1 4186945..4189317 Sugiyamaella lignohabitans 30033140 AWJ20_1349 CDS MAS1 NC_031672.1 4189627 4191075 R Smaller subunit of the mitochondrial processing protease (MPP); essential processing enzyme that cleaves the N-terminal targeting sequences from mitochondrially imported proteins; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0017087 - mitochondrial processing peptidase complex [Evidence IDA] [PMID 2905264]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA] [PMID 2905264]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006627 - protein processing involved in protein targeting to mitochondrion [Evidence IDA] [PMID 2007593]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Mas1p complement(4189627..4191075) Sugiyamaella lignohabitans 30033141 AWJ20_1350 CDS SHH4 NC_031672.1 4191723 4192352 D Mitochondrial inner membrane hypothetical protein; similar to Tim18p; a fraction copurifies with Sdh3p, but Shh4p is neither a stoichiometric subunit of succinate dehydrogenase nor of the TIM22 translocase; expression induced by nitrogen limitation in a GLN3, GAT1-dependent manner; SHH4 has a paralog, SDH4, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10637294]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; protein SHH4 4191723..4192352 Sugiyamaella lignohabitans 30033143 AWJ20_1351 CDS AWJ20_1351 NC_031672.1 4193571 4194710 D uncharacterized protein 4193571..4194710 Sugiyamaella lignohabitans 30033144 AWJ20_1352 CDS AWJ20_1352 NC_031672.1 4194994 4195677 R uncharacterized protein complement(4194994..4195677) Sugiyamaella lignohabitans 30033145 AWJ20_1353 CDS ARG81 NC_031672.1 4198989 4201463 D Zinc finger transcription factor involved in arginine-responsive genes; Zn(2)-Cys(6) binuclear cluster domain type; involved in the regulation of arginine-responsive genes; acts with Arg80p and Arg82p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3311884]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IDA] [PMID 10688655]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA]; GO_process: GO:0000821 - regulation of arginine metabolic process [Evidence IMP] [PMID 10688655]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Arg81p 4198989..4201463 Sugiyamaella lignohabitans 30033146 AWJ20_1354 CDS AWJ20_1354 NC_031672.1 4201950 4203500 D uncharacterized protein 4201950..4203500 Sugiyamaella lignohabitans 30033147 AWJ20_1355 CDS AWJ20_1355 NC_031672.1 4203618 4204403 R uncharacterized protein complement(4203618..4204403) Sugiyamaella lignohabitans 30033148 AWJ20_1356 CDS AWJ20_1356 NC_031672.1 4206139 4207065 D uncharacterized protein 4206139..4207065 Sugiyamaella lignohabitans 30033149 AWJ20_1357 CDS TNA1 NC_031672.1 4207912 4212013 D High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p join(4207912..4209347,4209685..4212013) Sugiyamaella lignohabitans 30033150 AWJ20_1358 CDS AWJ20_1358 NC_031672.1 4212296 4213054 R BAG family molecular chaperone regulator Bag102 complement(4212296..4213054) Sugiyamaella lignohabitans 30033151 AWJ20_1359 CDS ATG22 NC_031672.1 4213343 4215208 R Vacuolar integral membrane protein required for efflux of amino acids; required for efflux of amino acids during autophagic body breakdown in the vacuole; null mutation causes a gradual loss of viability during starvation; GO_component: GO:0071627 - integral component of fungal-type vacuolar membrane [Evidence IDA] [PMID 17021250]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032974 - amino acid transmembrane export from vacuole [Evidence IMP] [PMID 17021250]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg22p complement(4213343..4215208) Sugiyamaella lignohabitans 30033152 AWJ20_1360 CDS SRO9 NC_031672.1 4217411 4217890 R Cytoplasmic RNA-binding protein; shuttles between nucleus and cytoplasm and is exported from the nucleus in an mRNA export-dependent manner; associates with translating ribosomes; involved in heme regulation of Hap1p as a component of the HMC complex, also involved in the organization of actin filaments; contains a La motif; SRO9 has a paralog, SLF1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23222640]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 10564276]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 10564276]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IPI] [PMID 10564276]; Sro9p complement(4217411..4217890) Sugiyamaella lignohabitans 30033154 AWJ20_1361 CDS GAL10 NC_031672.1 4222512 4223534 D UDP-glucose-4-epimerase; catalyzes the interconversion of UDP-galactose and UDP-D-glucose in galactose metabolism; also catalyzes the conversion of alpha-D-glucose or alpha-D-galactose to their beta-anomers; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 14764091]; GO_function: GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA,IEA]; GO_function: GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IMP] [PMID 14158615]; GO_function: GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IDA] [PMID 14764091]; GO_function: GO:0004034 - aldose 1-epimerase activity [Evidence IEA]; GO_function: GO:0004034 - aldose 1-epimerase activity [Evidence IDA] [PMID 14764091]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IMP] [PMID 14158615]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IDA] [PMID 14764091]; GO_process: GO:0006012 - galactose metabolic process [Evidence IEA,IEA,IEA]; GO_process: GO:0019318 - hexose metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; bifunctional UDP-glucose 4-epimerase/aldose 1-epimerase 4222512..4223534 Sugiyamaella lignohabitans 30033155 AWJ20_1362 CDS AWJ20_1362 NC_031672.1 4224133 4226331 D uncharacterized protein 4224133..4226331 Sugiyamaella lignohabitans 30033156 AWJ20_1363 CDS GEF1 NC_031672.1 4226799 4229231 D Voltage-gated chloride channel; localized to the golgi, the endosomal system, and plasma membrane; involved in cation homeostasis; highly homologous to vertebrate voltage-gated chloride channels; modulates TBSV model (+) RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15710404]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 9614122]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0034707 - chloride channel complex [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17662057]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15710404]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17662057]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17662057]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0005254 - chloride channel activity [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IDA] [PMID 12074596]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9614122]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:1902476 - chloride transmembrane transport [Evidence IEA]; GO_process: GO:0006821 - chloride transport [Evidence IEA,IEA]; GO_process: GO:0034220 - ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0044070 - regulation of anion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Gef1p 4226799..4229231 Sugiyamaella lignohabitans 30033157 AWJ20_1364 CDS TAF6 NC_031672.1 4229433 4230824 R Subunit (60 kDa) of TFIID and SAGA complexes; involved in transcription initiation of RNA polymerase II and in chromatin modification, similar to histone H4; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA,IPI] [PMID 12501245]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10817999]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 9844639]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0051090 - regulation of sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf6p complement(4229433..4230824) Sugiyamaella lignohabitans 30033158 AWJ20_1365 CDS AWJ20_1365 NC_031672.1 4231018 4232859 D uncharacterized protein 4231018..4232859 Sugiyamaella lignohabitans 30033159 AWJ20_1366 CDS PRP5 NC_031672.1 4233936 4237196 R RNA helicase in the DEAD-box family; necessary for prespliceosome formation, bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 8969184]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000348 - mRNA branch site recognition [Evidence TAS] [PMID 9476892]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; DEAD-box RNA helicase PRP5 complement(join(4233936..4236611,4236801..4237196)) Sugiyamaella lignohabitans 30033160 AWJ20_1367 CDS DNF1 NC_031672.1 4237442 4241806 R Aminophospholipid translocase (flippase); localizes primarily to the plasma membrane; contributes to endocytosis, protein transport and cell polarity; type 4 P-type ATPase; DNF1 has a paralog, DNF2, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12221123]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12631737]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence ISS] [PMID 9224683]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI] [PMID 12631737]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 17015438]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI,IMP] [PMID 12631737]; GO_process: GO:0007163 - establishment or maintenance of cell polarity [Evidence IGI] [PMID 15461661]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI] [PMID 12631737]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI,IMP] [PMID 17015438]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; aminophospholipid-translocating P4-type ATPase DNF1 complement(4237442..4241806) Sugiyamaella lignohabitans 30033161 AWJ20_1368 CDS SIW14 NC_031672.1 4244540 4245493 R putative tyrosine protein phosphatase SIW14 complement(4244540..4245493) Sugiyamaella lignohabitans 30033162 AWJ20_1369 CDS AWJ20_1369 NC_031672.1 4246914 4248374 R Transcriptional activator complement(4246914..4248374) Sugiyamaella lignohabitans 30033163 AWJ20_1370 CDS CDC6 NC_031672.1 4252799 4254700 R Essential ATP-binding protein required for DNA replication; component of the pre-replicative complex (pre-RC) which requires ORC to associate with chromatin and is in turn required for Mcm2-7p DNA association; homologous to S. pombe Cdc18p; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 10075735]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 8083240]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 8083240]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 9288745]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 8083240]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 8083240]; GO_function: GO:0003682 - chromatin binding [Evidence IMP] [PMID 10075735]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9159120]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9288745]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 10075735]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 9312054]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10075735]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 10075735]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 8538771]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 9335335]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 9990508]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16980387]; AAA family ATPase CDC6 complement(4252799..4254700) Sugiyamaella lignohabitans 30033165 AWJ20_1371 CDS AWJ20_1371 NC_031672.1 4255724 4256779 D uncharacterized protein 4255724..4256779 Sugiyamaella lignohabitans 30033166 AWJ20_1372 CDS MGA2 NC_031672.1 4257918 4259387 D ER membrane protein involved in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting; MGA2 has a paralog, SPT23, that arose from the whole genome duplication; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISM] [PMID 11007476]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19061897]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070417 - cellular response to cold [Evidence IMP] [PMID 11855848]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 11063674]; GO_process: GO:0048255 - mRNA stabilization [Evidence IMP] [PMID 15220333]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11557770]; GO_process: GO:0061399 - positive regulation of transcription from RNA polymerase II promoter in response to cobalt ion [Evidence IMP] [PMID 11509659]; GO_process: GO:0061419 - positive regulation of transcription from RNA polymerase II promoter in response to hypoxia [Evidence IMP] [PMID 11509659]; GO_process: GO:0036083 - positive regulation of unsaturated fatty acid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 9927444]; Mga2p 4257918..4259387 Sugiyamaella lignohabitans 30033167 AWJ20_1373 CDS SPT23 NC_031672.1 4259649 4262150 D ER membrane protein involved in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting; SPT23 has a paralog, MGA2, that arose from the whole genome duplication; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISM] [PMID 11007476]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11007476]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 15343339]; GO_process: GO:0070417 - cellular response to cold [Evidence IGI] [PMID 11855848]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 11063674]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11557770]; GO_process: GO:0036083 - positive regulation of unsaturated fatty acid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 9927444]; Spt23p 4259649..4262150 Sugiyamaella lignohabitans 30033168 AWJ20_1374 CDS AWJ20_1374 NC_031672.1 4263496 4266201 D uncharacterized protein 4263496..4266201 Sugiyamaella lignohabitans 30033169 AWJ20_1375 CDS AWJ20_1375 NC_031672.1 4266387 4267850 R uncharacterized protein complement(4266387..4267850) Sugiyamaella lignohabitans 30033170 AWJ20_1376 CDS AWJ20_1376 NC_031672.1 4268060 4268662 D uncharacterized protein 4268060..4268662 Sugiyamaella lignohabitans 30033171 AWJ20_1377 CDS MNT2 NC_031672.1 4269086 4270765 R Mannosyltransferase; involved in adding the 4th and 5th mannose residues of O-linked glycans; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence ISS] [PMID 10521541]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000033 - alpha-1,3-mannosyltransferase activity [Evidence IGI,IMP] [PMID 10521541]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IGI,IMP] [PMID 10521541]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; Mnt2p complement(4269086..4270765) Sugiyamaella lignohabitans 30033172 AWJ20_1379 CDS RPL26B NC_031672.1 4273915 4274211 D Ribosomal 60S subunit protein L26B; binds to 5.8S rRNA; non-essential even when paralog is also deleted; deletion has minimal affections on ribosome biosynthesis; homologous to mammalian ribosomal protein L26 and bacterial L24; RPL26B has a paralog, RPL26A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 6337137]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L26B 4273915..4274211 Sugiyamaella lignohabitans 30033174 AWJ20_1380 CDS SPT8 NC_031672.1 4275791 4277899 D SAGA complex subunit SPT8 4275791..4277899 Sugiyamaella lignohabitans 30033176 AWJ20_1381 CDS AWJ20_1381 NC_031672.1 4278517 4279854 D Uncharacterized protein C3H8.04 4278517..4279854 Sugiyamaella lignohabitans 30033177 AWJ20_1382 CDS GYP8 NC_031672.1 4279949 4281625 R GTPase-activating protein for yeast Rab family members; Ypt1p is the preferred in vitro substrate but also acts on Sec4p, Ypt31p and Ypt32p; involved in the regulation of ER to Golgi vesicle transport; GO_component: GO:0005622 - intracellular [Evidence IDA] [PMID 12189143]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IGI,IPI,ISS] [PMID 12189143]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 12189143]; Gyp8p complement(4279949..4281625) Sugiyamaella lignohabitans 30033178 AWJ20_1383 CDS CAK1 NC_031672.1 4281952 4282944 D cyclin-dependent protein kinase-activating kinase CAK1 4281952..4282944 Sugiyamaella lignohabitans 30033179 AWJ20_1384 CDS AWJ20_1384 NC_031672.1 4283204 4284466 R uncharacterized protein complement(4283204..4284466) Sugiyamaella lignohabitans 30033180 AWJ20_1385 CDS AWJ20_1385 NC_031672.1 4284728 4285039 D Protein GON7 4284728..4285039 Sugiyamaella lignohabitans 30033181 AWJ20_1386 CDS PFK2 NC_031672.1 4287636 4290539 R Beta subunit of heterooctameric phosphofructokinase; involved in glycolysis; indispensable for anaerobic growth; activated by fructose-2,6-bisphosphate and AMP; mutation inhibits glucose induction of cell cycle-related genes; GO_component: GO:0005945 - 6-phosphofructokinase complex [Evidence IEA]; GO_component: GO:0005945 - 6-phosphofructokinase complex [Evidence IMP] [PMID 3007939]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_function: GO:0003872 - 6-phosphofructokinase activity [Evidence IEA,IEA]; GO_function: GO:0003872 - 6-phosphofructokinase activity [Evidence IMP] [PMID 3007939]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA,IEA]; GO_process: GO:0006002 - fructose 6-phosphate metabolic process [Evidence IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IDA] [PMID 3000145]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 3007939]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IGI] [PMID 18632794]; 6-phosphofructokinase subunit beta complement(4287636..4290539) Sugiyamaella lignohabitans 30033182 AWJ20_1387 CDS SPE1 NC_031672.1 4293423 4294772 D Ornithine decarboxylase; catalyzes the first step in polyamine biosynthesis; degraded in a proteasome-dependent manner in the presence of excess polyamines; deletion decreases lifespan, and increases necrotic cell death and ROS generation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004586 - ornithine decarboxylase activity [Evidence IEA]; GO_function: GO:0004586 - ornithine decarboxylase activity [Evidence IDA] [PMID 2681188]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006596 - polyamine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009446 - putrescine biosynthetic process [Evidence IMP] [PMID 7929015]; GO_process: GO:0033387 - putrescine biosynthetic process from ornithine [Evidence IEA]; ornithine decarboxylase SPE1 4293423..4294772 Sugiyamaella lignohabitans 30033183 AWJ20_1388 CDS AWJ20_1388 NC_031672.1 4295474 4296610 D uncharacterized protein 4295474..4296610 Sugiyamaella lignohabitans 30033184 AWJ20_1389 CDS AWJ20_1389 NC_031672.1 4297380 4298501 D uncharacterized protein 4297380..4298501 Sugiyamaella lignohabitans 30033185 AWJ20_1391 CDS AWJ20_1391 NC_031672.1 4299074 4300150 R aromatic ring-opening dioxygenase (predicted) complement(4299074..4300150) Sugiyamaella lignohabitans 30033188 AWJ20_1392 CDS AWJ20_1392 NC_031672.1 4300950 4301972 D uncharacterized protein 4300950..4301972 Sugiyamaella lignohabitans 30033189 AWJ20_1393 CDS AWJ20_1393 NC_031672.1 4302048 4303703 R uncharacterized protein complement(4302048..4303703) Sugiyamaella lignohabitans 30033190 AWJ20_1394 CDS AWJ20_1394 NC_031672.1 4304048 4304875 D uncharacterized protein 4304048..4304875 Sugiyamaella lignohabitans 30033191 AWJ20_1395 CDS AWJ20_1395 NC_031672.1 4305250 4305699 D uncharacterized protein 4305250..4305699 Sugiyamaella lignohabitans 30033192 AWJ20_1396 CDS AWJ20_1396 NC_031672.1 4305832 4307976 R uncharacterized protein complement(4305832..4307976) Sugiyamaella lignohabitans 30033193 AWJ20_1397 CDS AWJ20_1397 NC_031672.1 4310964 4312625 D arylsulfatase (predicted) 4310964..4312625 Sugiyamaella lignohabitans 30033194 AWJ20_1398 CDS BPL1 NC_031672.1 4312936 4315053 D Biotin:apoprotein ligase; covalently modifies proteins with the addition of biotin, required for acetyl-CoA carboxylase (Acc1p) holoenzyme formation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA,IEA]; GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IMP] [PMID 6108218]; GO_function: GO:0004078 - biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity [Evidence IEA]; GO_function: GO:0004079 - biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity [Evidence IEA]; GO_function: GO:0004080 - biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity [Evidence IEA]; GO_function: GO:0071734 - biotin-[pyruvate-carboxylase] ligase activity [Evidence IDA] [PMID 10551847]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009305 - protein biotinylation [Evidence IDA] [PMID 10551847]; GO_process: GO:0009305 - protein biotinylation [Evidence IMP] [PMID 6108218]; biotin--[acetyl-CoA-carboxylase] ligase BPL1 4312936..4315053 Sugiyamaella lignohabitans 30033195 AWJ20_1399 CDS AWJ20_1399 NC_031672.1 4315191 4316120 R uncharacterized protein complement(4315191..4316120) Sugiyamaella lignohabitans 30033196 AWJ20_1400 CDS YCS4 NC_031672.1 4317184 4320285 D Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation, chromatin binding of condensin, tRNA gene clustering at the nucleolus, and silencing at the mating type locus; required for replication slow zone (RSZ) breakage following Mec1p inactivation; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IDA] [PMID 10811823]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11854418]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IGI] [PMID 11864994]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 11854418]; GO_process: GO:0030261 - chromosome condensation [Evidence IEA,IEA]; GO_process: GO:0043007 - maintenance of rDNA [Evidence IMP] [PMID 17203076]; GO_process: GO:0010032 - meiotic chromosome condensation [Evidence IMP] [PMID 14662740]; GO_process: GO:0051307 - meiotic chromosome separation [Evidence IMP] [PMID 14662740]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IEA]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IPI] [PMID 10811823]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 11854418]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 11864994]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA,IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 11854418]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 11864994]; GO_process: GO:0007130 - synaptonemal complex assembly [Evidence IMP] [PMID 14662740]; GO_process: GO:0070058 - tRNA gene clustering [Evidence IMP] [PMID 18708579]; Ycs4p 4317184..4320285 Sugiyamaella lignohabitans 30033199 AWJ20_1401 CDS THO1 NC_031672.1 4324385 4325026 D Conserved nuclear RNA-binding protein; specifically binds to transcribed chromatin in a THO- and RNA-dependent manner, genetically interacts with shuttling hnRNP NAB2; overproduction suppresses transcriptional defect caused by hpr1 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 16738307]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16738307]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 16738307]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IGI] [PMID 16738307]; GO_process: GO:0022618 - ribonucleoprotein complex assembly [Evidence IMP] [PMID 16738307]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IGI] [PMID 9707445]; Tho1p 4324385..4325026 Sugiyamaella lignohabitans 30033200 AWJ20_1402 CDS AWJ20_1402 NC_031672.1 4325347 4327911 R uncharacterized protein complement(4325347..4327911) Sugiyamaella lignohabitans 30033201 AWJ20_1403 CDS AWJ20_1403 NC_031672.1 4330438 4332909 D uncharacterized protein 4330438..4332909 Sugiyamaella lignohabitans 30033202 AWJ20_1404 CDS AWJ20_1404 NC_031672.1 4333038 4334234 R uncharacterized protein complement(4333038..4334234) Sugiyamaella lignohabitans 30033203 AWJ20_1405 CDS AWJ20_1405 NC_031672.1 4336774 4338051 R uncharacterized protein complement(4336774..4338051) Sugiyamaella lignohabitans 30033204 AWJ20_1406 CDS BDF1 NC_031672.1 4342857 4345364 R chromatin-binding protein BDF1 complement(4342857..4345364) Sugiyamaella lignohabitans 30033205 AWJ20_1407 CDS AWJ20_1407 NC_031672.1 4347346 4348356 D uncharacterized protein 4347346..4348356 Sugiyamaella lignohabitans 30033206 AWJ20_1408 CDS YML6 NC_031672.1 4348715 4349518 D Mitochondrial ribosomal protein of the large subunit; has similarity to E. coli L4 ribosomal protein and human mitoribosomal MRP-L4 protein; essential for viability, unlike most other mitoribosomal proteins; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL6 4348715..4349518 Sugiyamaella lignohabitans 30033207 AWJ20_1409 CDS YOX1 NC_031672.1 4350980 4352281 R Homeobox transcriptional repressor; binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycle-regulated; potential Cdc28p substrate; relocalizes from nucleus to cytoplasm upon DNA replication stress; YOX1 has a paralog, YHP1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12464632]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA,IMP] [PMID 12464633]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA] [PMID 20385087]; GO_function: GO:0001191 - RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription [Evidence IPI] [PMID 12464633]; GO_function: GO:0001191 - RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription [Evidence IMP,IPI] [PMID 20385087]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0071930 - negative regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 12464633]; GO_process: GO:0071930 - negative regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 17314407]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Yox1p complement(4350980..4352281) Sugiyamaella lignohabitans 30033208 AWJ20_1410 CDS YEH2 NC_031672.1 4355324 4356871 R Steryl ester hydrolase; catalyzes steryl ester hydrolysis at the plasma membrane; involved in sterol metabolism; YEH2 has a paralog, YEH1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 15713625]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15632184]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004771 - sterol esterase activity [Evidence IEA]; GO_function: GO:0004771 - sterol esterase activity [Evidence IDA,IMP] [PMID 15632184]; GO_function: GO:0004771 - sterol esterase activity [Evidence IDA] [PMID 15713625]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 14587103]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0016125 - sterol metabolic process [Evidence IMP] [PMID 15632184]; GO_process: GO:0016125 - sterol metabolic process [Evidence IMP] [PMID 15713625]; Yeh2p complement(4355324..4356871) Sugiyamaella lignohabitans 30033210 AWJ20_1411 CDS MET14 NC_031672.1 4359246 4359512 D Adenylylsulfate kinase; required for sulfate assimilation and involved in methionine metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004020 - adenylylsulfate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004020 - adenylylsulfate kinase activity [Evidence IMP] [PMID 197388]; GO_function: GO:0004020 - adenylylsulfate kinase activity [Evidence IDA] [PMID 3019265]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA]; GO_process: GO:0070814 - hydrogen sulfide biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0000103 - sulfate assimilation [Evidence IEA]; GO_process: GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IMP] [PMID 197388]; GO_process: GO:0000096 - sulfur amino acid metabolic process [Evidence IMP] [PMID 1101032]; adenylyl-sulfate kinase 4359246..4359512 Sugiyamaella lignohabitans 30033211 AWJ20_1412 CDS DID4 NC_031672.1 4359793 4360224 R Class E Vps protein of the ESCRT-III complex; required for sorting of integral membrane proteins into lumenal vesicles of multivesicular bodies, and for delivery of newly synthesized vacuolar enzymes to the vacuole, involved in endocytosis; GO_component: GO:0000815 - ESCRT III complex [Evidence IDA] [PMID 12194857]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12194857]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IMP] [PMID 19234443]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IPI] [PMID 12194857]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-III subunit protein DID4 complement(4359793..4360224) Sugiyamaella lignohabitans 30033212 AWJ20_1413 CDS RIM11 NC_031672.1 4364485 4365633 D serine/threonine protein kinase RIM11 4364485..4365633 Sugiyamaella lignohabitans 30033213 AWJ20_1414 CDS VPS68 NC_031672.1 4365874 4366395 R Vacuolar membrane hypothetical protein; involved in vacuolar protein sorting; also detected in the mitochondria; GO_component: GO:0034424 - Vps55/Vps68 complex [Evidence IDA,IPI] [PMID 18216282]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23708375]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP] [PMID 18216282]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12134085]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps68p complement(4365874..4366395) Sugiyamaella lignohabitans 30033214 AWJ20_1415 CDS AMO2 NC_031672.1 4369834 4371843 D one of two likely peroxisomal copper amine oxidase genes; similar to A.niger AO-I; allele of CaO19.10662; putative peroxisomal copper amine oxidase 4369834..4371843 Sugiyamaella lignohabitans 30033215 AWJ20_1416 CDS AWJ20_1416 NC_031672.1 4373358 4374101 D uncharacterized protein 4373358..4374101 Sugiyamaella lignohabitans 30033216 AWJ20_1417 CDS AWJ20_1417 NC_031672.1 4376214 4377440 D uncharacterized protein 4376214..4377440 Sugiyamaella lignohabitans 30033217 AWJ20_1418 CDS RPL3 NC_031672.1 4378139 4379305 D Ribosomal 60S subunit protein L3; homologous to mammalian ribosomal protein L3 and bacterial L3; plays an important role in function of eIF5B in stimulating 3' end processing of 18S rRNA in context of 80S ribosomes that have not yet engaged in translation; involved in replication and maintenance of killer double stranded RNA virus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 3537704]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L3 4378139..4379305 Sugiyamaella lignohabitans 30033218 AWJ20_1419 CDS AWJ20_1419 NC_031672.1 4380632 4381675 D uncharacterized protein 4380632..4381675 Sugiyamaella lignohabitans 30033219 AWJ20_1420 CDS CRH1 NC_031672.1 4383089 4384429 R Chitin transglycosylase; functions in the transfer of chitin to beta(1-6) and beta(1-3) glucans in the cell wall; similar and functionally redundant to Utr2; localizes to sites of polarized growth; expression induced by cell wall stress; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10757808]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 10757808]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA,IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IGI,IMP] [PMID 18694928]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IDA] [PMID 23919454]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006037 - cell wall chitin metabolic process [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0071555 - cell wall organization [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Crh1p complement(4383089..4384429) Sugiyamaella lignohabitans 30033221 AWJ20_1421 CDS SCT1 NC_031672.1 4384741 4386822 R Glycerol 3-phosphate/dihydroxyacetone phosphate sn-1 acyltransferase; dual substrate-specific acyltransferase of the glycerolipid biosynthesis pathway; prefers 16-carbon fatty acids; similar to Gpt2p; gene is constitutively transcribed; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 19525420]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004366 - glycerol-3-phosphate O-acyltransferase activity [Evidence IEA]; GO_function: GO:0004366 - glycerol-3-phosphate O-acyltransferase activity [Evidence IDA,IGI,IMP] [PMID 11544256]; GO_function: GO:0016287 - glycerone-phosphate O-acyltransferase activity [Evidence IEA]; GO_function: GO:0016287 - glycerone-phosphate O-acyltransferase activity [Evidence IDA] [PMID 11544256]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IGI,IMP] [PMID 11544256]; bifunctional glycerol-3-phosphate/glycerone-phosphate O-acyltransferase SCT1 complement(4384741..4386822) Sugiyamaella lignohabitans 30033222 AWJ20_1422 CDS GAT2 NC_031672.1 4392245 4393660 D Protein containing GATA family zinc finger motifs; similar to Gln3p and Dal80p; expression repressed by leucine; GO_component: GO:0005634 - nucleus [Evidence ISA] [PMID 10392447]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence ISA] [PMID 10392447]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence ISA] [PMID 10392447]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; Gat2p 4392245..4393660 Sugiyamaella lignohabitans 30033223 AWJ20_1423 CDS STD1 NC_031672.1 4401492 4402403 D Protein involved in control of glucose-regulated gene expression; interacts with kinase Snf1p, glucose sensors Snf3p and Rgt2p, TATA-binding Spt15p; regulator of transcription factor Rgt1p; interactions with Pma1p appear to propagate [GAR+]; STD1 has a paralog, MTH1, that arose from the whole genome duplication; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10373505]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10373505]; GO_function: GO:0030295 - protein kinase activator activity [Evidence IGI,IPI] [PMID 12618390]; GO_process: GO:0006006 - glucose metabolic process [Evidence IMP] [PMID 10373505]; GO_process: GO:0071590 - nicotinamide riboside biosynthetic process [Evidence IGI,IMP] [PMID 19846558]; GO_process: GO:0071592 - nicotinic acid riboside biosynthetic process [Evidence IGI,IMP] [PMID 19846558]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP,IPI] [PMID 7667094]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0009651 - response to salt stress [Evidence IMP] [PMID 9725828]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 10373505]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Std1p 4401492..4402403 Sugiyamaella lignohabitans 30033224 AWJ20_1424 CDS DBP5 NC_031672.1 4406964 4408550 D Cytoplasmic ATP-dependent RNA helicase of the DEAD-box family; involved in mRNA export from the nucleus, remodeling messenger ribonucleoprotein particles (mRNPs), with ATPase activity stimulated by Gle1p, IP6 and Nup159p; involved in translation termination along with Sup45p (eRF1); role in the cellular response to heat stress; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 19198597]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10610322]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15280434]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9564048]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IPI] [PMID 10428971]; GO_component: GO:0044614 - nuclear pore cytoplasmic filaments [Evidence IDA] [PMID 10610322]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15280434]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 17272721]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence IDA,ISS] [PMID 9564047]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 19805289]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000822 - inositol hexakisphosphate binding [Evidence IDA] [PMID 16783363]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI,IMP] [PMID 9564048]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IGI,IPI] [PMID 17272721]; GO_process: GO:0006810 - transport [Evidence IEA]; ATP-dependent RNA helicase DBP5 4406964..4408550 Sugiyamaella lignohabitans 30033225 AWJ20_1425 CDS iec1 NC_031672.1 4408782 4410008 R Ino80 complex subunit Iec1 complement(4408782..4410008) Sugiyamaella lignohabitans 30033226 AWJ20_1426 CDS FRS2 NC_031672.1 4410642 4412120 D Alpha subunit of cytoplasmic phenylalanyl-tRNA synthetase; forms a tetramer with Frs1p to form active enzyme; evolutionarily distant from mitochondrial phenylalanyl-tRNA synthetase based on protein sequence, but substrate binding is similar; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IDA] [PMID 3049607]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 16162501]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 166841]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IDA] [PMID 16162501]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IDA] [PMID 166841]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; phenylalanine--tRNA ligase subunit alpha 4410642..4412120 Sugiyamaella lignohabitans 30033227 AWJ20_1427 CDS GPA1 NC_031672.1 4416699 4417931 D Subunit of the G protein involved in pheromone response; GTP-binding alpha subunit of the heterotrimeric G protein; negatively regulates the mating pathway by sequestering G(beta)gamma and by triggering an adaptive response; activates Vps34p at the endosome; protein abundance increases in response to DNA replication stress; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 16839886]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IBA]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IDA,IPI] [PMID 11394869]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IMP] [PMID 2105453]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8756677]; GO_function: GO:0031683 - G-protein beta/gamma-subunit complex binding [Evidence IBA,IEA]; GO_function: GO:0001664 - G-protein coupled receptor binding [Evidence IBA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11394869]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 1900495]; GO_function: GO:0019001 - guanyl nucleotide binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IBA,IEA,IEA]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 12556475]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 2105453]; GO_process: GO:0007189 - adenylate cyclase-activating G-protein coupled receptor signaling pathway [Evidence IBA,IEA]; GO_process: GO:0031684 - heterotrimeric G-protein complex cycle [Evidence IMP] [PMID 2107073]; GO_process: GO:0048017 - inositol lipid-mediated signaling [Evidence IMP] [PMID 16839886]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IMP] [PMID 19386762]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 19386762]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 3113739]; GO_process: GO:0071701 - regulation of MAPK export from nucleus [Evidence IMP] [PMID 12556475]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA,IEA]; guanine nucleotide-binding protein subunit alpha 4416699..4417931 Sugiyamaella lignohabitans 30033228 AWJ20_1429 CDS HSE1 NC_031672.1 4423090 4425216 R Subunit of the endosomal Vps27p-Hse1p complex; complex is required for sorting of ubiquitinated membrane proteins into intralumenal vesicles prior to vacuolar degradation, as well as for recycling of Golgi proteins and formation of lumenal membranes; GO_component: GO:0033565 - ESCRT-0 complex [Evidence IPI] [PMID 12055639]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12055639]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 12055639]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 20150893]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 12055639]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 12055639]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; ESCRT-0 subunit protein HSE1 complement(4423090..4425216) Sugiyamaella lignohabitans 30033230 AWJ20_1430 CDS LAG1 NC_031672.1 4426355 4427575 D Ceramide synthase component; involved in synthesis of ceramide from C26(acyl)-coenzyme A and dihydrosphingosine or phytosphingosine, functionally equivalent to Lac1p; forms ER foci upon DNA replication stress; homolog of human CERS2, a tumor metastasis suppressor gene whose silencing enahnces invasion/metastasis of prostate cancer cells; LAG1 has a paralog, LAC1, that arose from the whole genome duplication; GO_component: GO:0061576 - acyl-CoA ceramide synthase complex [Evidence IDA] [PMID 15692566]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 22842922]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IEA]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IMP] [PMID 11387200]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IMP] [PMID 11694577]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IDA] [PMID 15692566]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046513 - ceramide biosynthetic process [Evidence IMP] [PMID 11694577]; GO_process: GO:0046513 - ceramide biosynthetic process [Evidence IDA] [PMID 15692566]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IEP,IMP] [PMID 8195187]; sphingosine N-acyltransferase LAG1 4426355..4427575 Sugiyamaella lignohabitans 30033232 AWJ20_1431 CDS MRP4 NC_031672.1 4428328 4429794 R Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_function: GO:0000049 - tRNA binding [Evidence ISS] [PMID 9445368]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein MRP4 complement(4428328..4429794) Sugiyamaella lignohabitans 30033233 AWJ20_1432 CDS STE20 NC_031672.1 4430273 4433728 R mitogen-activated protein kinase kinase kinase kinase STE20 complement(4430273..4433728) Sugiyamaella lignohabitans 30033234 AWJ20_1433 CDS BYE1 NC_031672.1 4438514 4441126 R Negative regulator of transcription elongation; contains a TFIIS-like domain that associates with chromatin and a PHD domain that interacts with H3K4me3; multicopy suppressor of temperature-sensitive ess1 mutations, binds RNA polymerase II large subunit; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 14704159]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 24003114]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 14704159]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Bye1p complement(4438514..4441126) Sugiyamaella lignohabitans 30033235 AWJ20_1434 CDS ALF1 NC_031672.1 4442851 4443588 D Alpha-tubulin folding protein; similar to mammalian cofactor B; Alf1p-GFP localizes to cytoplasmic microtubules; required for the folding of alpha-tubulin and may play an additional role in microtubule maintenance; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0043014 - alpha-tubulin binding [Evidence IPI] [PMID 9885248]; GO_function: GO:0008017 - microtubule binding [Evidence IPI] [PMID 9885248]; GO_process: GO:0007023 - post-chaperonin tubulin folding pathway [Evidence IMP,IPI] [PMID 9885248]; GO_process: GO:0006457 - protein folding [Evidence IMP,IPI] [PMID 9885248]; Alf1p 4442851..4443588 Sugiyamaella lignohabitans 30033236 AWJ20_1435 CDS MIF2 NC_031672.1 4443694 4445343 R Protein required for structural integrity of elongating spindles; localizes to the kinetochore; interacts with histones H2A, H2B, and H4; phosphorylated by Ipl1p; orthologous to human centromere constitutive-associated network (CCAN) subunit CENP-C and fission yeast cnp3; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0000780 - condensed nuclear chromosome, centromeric region [Evidence IDA] [PMID 9407032]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0000818 - nuclear MIS12/MIND complex [Evidence IDA] [PMID 14581449]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0019237 - centromeric DNA binding [Evidence IEA]; GO_function: GO:0019237 - centromeric DNA binding [Evidence IDA] [PMID 9407032]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI] [PMID 22561346]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 8408221]; GO_process: GO:0051382 - kinetochore assembly [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IMP] [PMID 8408221]; Mif2p complement(4443694..4445343) Sugiyamaella lignohabitans 30033237 AWJ20_1436 CDS MRS6 NC_031672.1 4446165 4447928 R Rab escort protein; forms a complex with the Ras-like small GTPase Ypt1p that is required for the prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p); sequence similarity to mammalian choroideraemia gene; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005968 - Rab-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 8183917]; GO_component: GO:0005968 - Rab-protein geranylgeranyltransferase complex [Evidence IDA] [PMID 8583924]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9202009]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 9202009]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0017137 - Rab GTPase binding [Evidence IMP] [PMID 12972569]; GO_function: GO:0004663 - Rab geranylgeranyltransferase activity [Evidence IDA,IMP] [PMID 8183917]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8132658]; GO_process: GO:0032858 - activation of Rab GTPase activity [Evidence IMP] [PMID 7750142]; GO_process: GO:0032858 - activation of Rab GTPase activity [Evidence IMP] [PMID 8132658]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0018344 - protein geranylgeranylation [Evidence IMP] [PMID 12972569]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 8183917]; Mrs6p complement(4446165..4447928) Sugiyamaella lignohabitans 30033238 AWJ20_1437 CDS NHA1 NC_031672.1 4449433 4449915 R Na+/H+ antiporter; involved in sodium and potassium efflux through the plasma membrane; required for alkali cation tolerance at acidic pH; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 17176761]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19254924]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15950597]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9802016]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015491 - cation:cation antiporter activity [Evidence ISS] [PMID 8654575]; GO_function: GO:0015491 - cation:cation antiporter activity [Evidence IMP] [PMID 9802016]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IEA]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IDA] [PMID 15950597]; GO_function: GO:0015299 - solute:proton antiporter activity [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0030004 - cellular monovalent inorganic cation homeostasis [Evidence IMP] [PMID 9802016]; GO_process: GO:0030007 - cellular potassium ion homeostasis [Evidence IMP] [PMID 16402204]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 16402204]; GO_process: GO:0035725 - sodium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006814 - sodium ion transport [Evidence IEA,IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nha1p complement(4449433..4449915) Sugiyamaella lignohabitans 30033239 AWJ20_1438 CDS RPL28 NC_031672.1 4452421 4452771 D Ribosomal 60S subunit protein L28; homologous to mammalian ribosomal protein L27A and bacterial L15; may have peptidyl transferase activity; can mutate to cycloheximide resistance; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence TAS] [PMID 9559554]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 2104804]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 6337137]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence TAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence TAS] [PMID 9559554]; GO_process: GO:0046677 - response to antibiotic [Evidence IEA]; GO_process: GO:0046898 - response to cycloheximide [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L28 4452421..4452771 Sugiyamaella lignohabitans 30033240 AWJ20_1439 CDS AWJ20_1439 NC_031672.1 4453927 4454673 D uncharacterized protein 4453927..4454673 Sugiyamaella lignohabitans 30033241 AWJ20_1440 CDS AWJ20_1440 NC_031672.1 4458778 4460907 R DNA repair protein rad26 complement(4458778..4460907) Sugiyamaella lignohabitans 30033243 AWJ20_1441 CDS EMG1 NC_031672.1 4461872 4462612 D Methyltransferase for rRNA; catalyzes methylation of the pseudouridine residue 1191 of 18S rRNA; member of the SPOUT methyltransferase family; required for maturation of 18S rRNA and for 40S ribosomal subunit production independently of methyltransferase activity; forms homodimers; human ortholog is mutated in Bowen-Conradi syndrome, and the equivalent mutation in yeast affects Emg1p dimerization and localization but not its methyltransferase activity; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11694595]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005880 - nuclear microtubule [Evidence IDA] [PMID 11935223]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11694595]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11935223]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0070037 - rRNA (pseudouridine) methyltransferase activity [Evidence IMP,ISO] [PMID 20972225]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0070475 - rRNA base methylation [Evidence IMP,ISO] [PMID 20972225]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11694595]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 11694595]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IGI] [PMID 16721597]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Emg1p 4461872..4462612 Sugiyamaella lignohabitans 30033244 AWJ20_1442 CDS AWJ20_1442 NC_031672.1 4464738 4465931 D uncharacterized protein 4464738..4465931 Sugiyamaella lignohabitans 30033245 AWJ20_1443 CDS AWJ20_1443 NC_031672.1 4466251 4466649 R uncharacterized protein complement(4466251..4466649) Sugiyamaella lignohabitans 30033246 AWJ20_1444 CDS JLP1 NC_031672.1 4468917 4470095 D Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 4468917..4470095 Sugiyamaella lignohabitans 30033247 AWJ20_1445 CDS GEF1 NC_031672.1 4471186 4472781 D Voltage-gated chloride channel; localized to the golgi, the endosomal system, and plasma membrane; involved in cation homeostasis; highly homologous to vertebrate voltage-gated chloride channels; modulates TBSV model (+) RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15710404]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 9614122]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0034707 - chloride channel complex [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17662057]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15710404]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17662057]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17662057]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0005254 - chloride channel activity [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IDA] [PMID 12074596]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9614122]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:1902476 - chloride transmembrane transport [Evidence IEA]; GO_process: GO:0006821 - chloride transport [Evidence IEA,IEA]; GO_process: GO:0034220 - ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0044070 - regulation of anion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Gef1p 4471186..4472781 Sugiyamaella lignohabitans 30033248 AWJ20_1446 CDS GEF1 NC_031672.1 4472914 4474194 D Voltage-gated chloride channel; localized to the golgi, the endosomal system, and plasma membrane; involved in cation homeostasis; highly homologous to vertebrate voltage-gated chloride channels; modulates TBSV model (+) RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15710404]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 9614122]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0034707 - chloride channel complex [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17662057]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15710404]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17662057]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17662057]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0005254 - chloride channel activity [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IDA] [PMID 12074596]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9614122]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:1902476 - chloride transmembrane transport [Evidence IEA]; GO_process: GO:0006821 - chloride transport [Evidence IEA,IEA]; GO_process: GO:0034220 - ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0044070 - regulation of anion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Gef1p 4472914..4474194 Sugiyamaella lignohabitans 30033249 AWJ20_1447 CDS GDA1 NC_031672.1 4474282 4475799 R Guanosine diphosphatase located in the Golgi; involved in the transport of GDP-mannose into the Golgi lumen by converting GDP to GMP after mannose is transferred its substrate; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence TAS] [PMID 11425802]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004382 - guanosine-diphosphatase activity [Evidence IEA]; GO_function: GO:0004382 - guanosine-diphosphatase activity [Evidence IDA] [PMID 7506254]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0045134 - uridine-diphosphatase activity [Evidence IDA] [PMID 11425802]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence TAS] [PMID 11713596]; Gda1p complement(4474282..4475799) Sugiyamaella lignohabitans 30033250 AWJ20_1448 CDS AWJ20_1448 NC_031672.1 4476935 4478458 D uncharacterized protein 4476935..4478458 Sugiyamaella lignohabitans 30033251 AWJ20_1449 CDS AWJ20_1449 NC_031672.1 4478537 4480810 R uncharacterized protein complement(4478537..4480810) Sugiyamaella lignohabitans 30033252 AWJ20_1450 CDS KAR4 NC_031672.1 4482081 4483406 D Transcription factor required for response to pheromones; also required during meiosis; exists in two forms, a slower-migrating form more abundant during vegetative growth and a faster-migrating form induced by pheromone; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA,IGI,IMP] [PMID 17101777]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IMP] [PMID 8754797]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 8754797]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0046020 - negative regulation of transcription from RNA polymerase II promoter by pheromones [Evidence IEP] [PMID 17101777]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0007329 - positive regulation of transcription from RNA polymerase II promoter by pheromones [Evidence IDA,IEP,IGI,IMP] [PMID 17101777]; Kar4p 4482081..4483406 Sugiyamaella lignohabitans 30033254 AWJ20_1451 CDS AWJ20_1451 NC_031672.1 4483678 4484643 R Sphingolipid C9-methyltransferase complement(4483678..4484643) Sugiyamaella lignohabitans 30033255 AWJ20_1452 CDS DBP1 NC_031672.1 4486495 4488444 D Putative ATP-dependent RNA helicase of the DEAD-box protein family; mutants show reduced stability of the 40S ribosomal subunit scanning through 5' untranslated regions of mRNAs; protein abundance increases in response to DNA replication stress; DBP1 has a paralog, DED1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence ISS] [PMID 1857205]; GO_function: GO:0003724 - RNA helicase activity [Evidence ISS] [PMID 8144024]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IMP] [PMID 14763975]; putative DEAD-box ATP-dependent RNA helicase DBP1 4486495..4488444 Sugiyamaella lignohabitans 30033256 AWJ20_1453 CDS AGE1 NC_031672.1 4500659 4504351 D ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector; involved in the secretory and endocytic pathways; contains C2C2H2 cysteine/histidine motif; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 21135091]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 21135091]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IEA]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IDA] [PMID 12627398]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IGI,ISS] [PMID 9677411]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0005543 - phospholipid binding [Evidence IDA] [PMID 21135091]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,ISS] [PMID 9677411]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,ISS] [PMID 9677411]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA,IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0032312 - regulation of ARF GTPase activity [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Age1p 4500659..4504351 Sugiyamaella lignohabitans 30033257 AWJ20_1454 CDS AWJ20_1454 NC_031672.1 4513013 4514992 D uncharacterized protein 4513013..4514992 Sugiyamaella lignohabitans 30033258 AWJ20_1455 CDS ACO1 NC_031672.1 4518381 4520393 D Aconitase; required for the tricarboxylic acid (TCA) cycle and also independently required for mitochondrial genome maintenance; phosphorylated; component of the mitochondrial nucleoid; mutation leads to glutamate auxotrophy; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15975908]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 15692048]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0003994 - aconitate hydratase activity [Evidence IEA,IEA]; GO_function: GO:0003994 - aconitate hydratase activity [Evidence IDA,IMP] [PMID 1972545]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 17698960]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 17698960]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 15692048]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IDA] [PMID 1972545]; aconitate hydratase ACO1 4518381..4520393 Sugiyamaella lignohabitans 30033259 AWJ20_1456 CDS AWJ20_1456 NC_031672.1 4518590 4518907 R uncharacterized protein complement(4518590..4518907) Sugiyamaella lignohabitans 30033260 AWJ20_1457 CDS TGL1 NC_031672.1 4520526 4522214 R Steryl ester hydrolase; one of three gene products (Yeh1p, Yeh2p, Tgl1p) responsible for steryl ester hydrolase activity and involved in sterol homeostasis; localized to lipid particle membranes; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 15713625]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 15713625]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016298 - lipase activity [Evidence ISS] [PMID 1574929]; GO_function: GO:0004771 - sterol esterase activity [Evidence IEA]; GO_function: GO:0004771 - sterol esterase activity [Evidence IDA] [PMID 15713625]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IMP] [PMID 10515935]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0016125 - sterol metabolic process [Evidence IMP] [PMID 15713625]; Tgl1p complement(4520526..4522214) Sugiyamaella lignohabitans 30033261 AWJ20_1458 CDS Lipf NC_031672.1 4522796 4523497 D Gastric triacylglycerol lipase 4522796..4523497 Sugiyamaella lignohabitans 30033262 AWJ20_1459 CDS GUP1 NC_031672.1 4525429 4526472 D Plasma membrane protein involved in remodeling GPI anchors; member of the MBOAT family of putative membrane-bound O-acyltransferases; role in misfolded protein quality control; proposed to be involved in glycerol transport; GUP1 has a paralog, GUP2, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15813700]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA,ISS] [PMID 10931309]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15813700]; GO_function: GO:0008374 - O-acyltransferase activity [Evidence IMP] [PMID 16597698]; GO_function: GO:0008374 - O-acyltransferase activity [Evidence IMP] [PMID 18036137]; GO_function: GO:0015293 - symporter activity [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 16597698]; GO_process: GO:0019563 - glycerol catabolic process [Evidence IGI,IMP] [PMID 10747858]; GO_process: GO:0015793 - glycerol transport [Evidence IGI,IMP] [PMID 10931309]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Gup1p 4525429..4526472 Sugiyamaella lignohabitans 30033263 AWJ20_1460 CDS LCL3 NC_031672.1 4526890 4527633 R hypothetical protein; mutant has long chronological lifespan; has homology to Staphylococcus aureus nuclease; GFP-fusion protein localizes to mitochondria; is induced in response to the DNA-damaging agent MMS; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Lcl3p complement(4526890..4527633) Sugiyamaella lignohabitans 30033265 AWJ20_1461 CDS BOR1 NC_031672.1 4528370 4530421 D Boron efflux transporter of the plasma membrane; binds HCO3-, I-, Br-, NO3- and Cl-; has similarity to the characterized boron efflux transporter A. thaliana BOR1; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 16565073]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 11401825]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11401825]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12447444]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015301 - anion:anion antiporter activity [Evidence IEA]; GO_function: GO:0080139 - borate efflux transmembrane transporter activity [Evidence IMP,ISA] [PMID 12447444]; GO_function: GO:0080139 - borate efflux transmembrane transporter activity [Evidence IMP] [PMID 16923078]; GO_function: GO:0080139 - borate efflux transmembrane transporter activity [Evidence IDA,IMP] [PMID 17459946]; GO_function: GO:0005452 - inorganic anion exchanger activity [Evidence IEA]; GO_process: GO:0006820 - anion transport [Evidence IEA]; GO_process: GO:0046713 - borate transport [Evidence IMP,ISA] [PMID 12447444]; GO_process: GO:0046713 - borate transport [Evidence IMP] [PMID 16923078]; GO_process: GO:0046713 - borate transport [Evidence IDA,IMP] [PMID 17459946]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 16565073]; GO_process: GO:0006810 - transport [Evidence IEA]; Bor1p 4528370..4530421 Sugiyamaella lignohabitans 30033266 AWJ20_1462 CDS AWJ20_1462 NC_031672.1 4530626 4532293 R uncharacterized protein complement(4530626..4532293) Sugiyamaella lignohabitans 30033267 AWJ20_1463 CDS MMS2 NC_031672.1 4533704 4534009 D Ubiquitin-conjugating enzyme variant; involved in error-free postreplication repair; forms a heteromeric complex with Ubc13p, an active ubiquitin-conjugating enzyme; cooperates with chromatin-associated RING finger proteins, Rad18p and Rad5p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10880451]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10880451]; GO_component: GO:0031371 - ubiquitin conjugating enzyme complex [Evidence IPI] [PMID 10089880]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,ISS] [PMID 10089880]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence ISS] [PMID 9576943]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12482937]; GO_process: GO:0010994 - free ubiquitin chain polymerization [Evidence IDA] [PMID 19706603]; GO_process: GO:0006301 - postreplication repair [Evidence IGI,IMP] [PMID 10089880]; GO_process: GO:0006301 - postreplication repair [Evidence IGI,IMP] [PMID 9576943]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA,IPI] [PMID 10089880]; E2 ubiquitin-conjugating protein MMS2 4533704..4534009 Sugiyamaella lignohabitans 30033268 AWJ20_1464 CDS SEH1 NC_031672.1 4535737 4536402 D Component of two distinct complexes; subunit of the Nup84 nuclear pore sub-complex (NPC) and the Seh1-associated (SEA) complex; the the NUP84 subcomplex contributes to nucleocytoplasmic transport and NPC biogenesis; the SEA complex is a coatamer-related complex that associates dynamically with the vacuole; homologous to human SEH1; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 21454883]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IC] [PMID 11823431]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IC] [PMID 10684247]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Seh1p 4535737..4536402 Sugiyamaella lignohabitans 30033269 AWJ20_1465 CDS NSA1 NC_031672.1 4537216 4538511 D Constituent of 66S pre-ribosomal particles; involved in 60S ribosomal subunit biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nsa1p 4537216..4538511 Sugiyamaella lignohabitans 30033270 AWJ20_1466 CDS CUE3 NC_031672.1 4538662 4540266 R hypothetical protein; has a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 12628920]; GO_process: GO:0008150 - biological_process [Evidence ND]; Cue3p complement(4538662..4540266) Sugiyamaella lignohabitans 30033271 AWJ20_1467 CDS TOS4 NC_031672.1 4542509 4544701 D Putative transcription factor, contains Forkhead Associated domain; found associated with chromatin; target of SBF transcription factor; expression is periodic and peaks in G1; involved in DNA replication checkpoint response; interacts with Rpd3 and Set3 histone deacetylase (HDAC) complexes; APCC(Cdh1) substrate; relative distribution to the nucleus increases upon DNA replication stress; TOS4 has a paralog, PLM2, that arose from the whole genome duplication; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12464632]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12464632]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI] [PMID 12760057]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI] [PMID 22333912]; Tos4p 4542509..4544701 Sugiyamaella lignohabitans 30033272 AWJ20_1468 CDS CDS1 NC_031672.1 4544910 4546193 R Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase); an enzyme that catalyzes that conversion of CTP + phosphate into diphosphate + CDP-diaclglyerol, a critical step in the synthesis of all major yeast phospholipids; GO_component: GO:0070319 - Golgi to plasma membrane transport vesicle [Evidence IDA] [PMID 2163397]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23623749]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8557688]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0004605 - phosphatidate cytidylyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004605 - phosphatidate cytidylyltransferase activity [Evidence IDA] [PMID 8557688]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic process [Evidence IEA]; GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic process [Evidence IMP] [PMID 2832385]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IMP] [PMID 2832385]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IMP] [PMID 8557688]; GO_process: GO:0006658 - phosphatidylserine metabolic process [Evidence IMP] [PMID 2832385]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; phosphatidate cytidylyltransferase complement(4544910..4546193) Sugiyamaella lignohabitans 30033273 AWJ20_1469 CDS POF1 NC_031672.1 4548779 4551358 D Nicotinamide mononucleotide-specific adenylyltransferase (NMNAT); catalyzes the conversion of nicotinamide mononucleotide (NMN) to nicotinamide adenine dinucleotide (NAD+); role in the nicotinamide riboside (NR) salvage pathway of NAD+ biosynthesis; involved in NR and NAD+ homeostasis; ATPase involved in protein quality control and filamentation pathways; interacts physically with Kss1p and suppresses the filamentation defect of a kss1 deletion; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24759102]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 24759102]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 22204397]; GO_function: GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IDA,IGI] [PMID 24759102]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP,IPI] [PMID 22204397]; GO_process: GO:0034356 - NAD biosynthesis via nicotinamide riboside salvage pathway [Evidence IGI] [PMID 24759102]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IGI] [PMID 21460040]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 21460040]; Pof1p join(4548779..4549465,4549967..4551358) Sugiyamaella lignohabitans 30033274 AWJ20_1470 CDS ECM33 NC_031672.1 4549937 4550839 R GPI-anchored hypothetical protein; possible role in apical bud growth; GPI-anchoring on the plasma membrane crucial to function; phosphorylated in mitochondria; similar to Sps2p; ECM33 has a paralog, PST1, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12583915]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 15583168]; Ecm33p complement(4549937..4550839) Sugiyamaella lignohabitans 30033276 AWJ20_1471 CDS GLY1 NC_031672.1 4558721 4559752 D Threonine aldolase; catalyzes the cleavage of L-allo-threonine and L-threonine to glycine; involved in glycine biosynthesis; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12676688]; GO_function: GO:0008732 - L-allo-threonine aldolase activity [Evidence IDA] [PMID 9151955]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA,IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0004793 - threonine aldolase activity [Evidence IDA] [PMID 9163906]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006545 - glycine biosynthetic process [Evidence IEA]; GO_process: GO:0006545 - glycine biosynthetic process [Evidence IDA] [PMID 3086094]; GO_process: GO:0006567 - threonine catabolic process [Evidence IDA] [PMID 3086094]; threonine aldolase GLY1 4558721..4559752 Sugiyamaella lignohabitans 30033277 AWJ20_1472 CDS RPS2 NC_031672.1 4561530 4562324 D Protein component of the small (40S) subunit; essential for control of translational accuracy; phosphorylation by C-terminal domain kinase I (CTDK-I) enhances translational accuracy; methylated on one or more arginine residues by Hmt1p; homologous to mammalian ribosomal protein S2 and bacterial S5; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 2517480]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 3533916]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 385049]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0070181 - small ribosomal subunit rRNA binding [Evidence IDA] [PMID 2517480]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 2517480]; GO_process: GO:0045903 - positive regulation of translational fidelity [Evidence IMP] [PMID 17545469]; GO_process: GO:0045903 - positive regulation of translational fidelity [Evidence IMP] [PMID 3522920]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 16246728]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S2 4561530..4562324 Sugiyamaella lignohabitans 30033278 AWJ20_1473 CDS FPR2 NC_031672.1 4562794 4563546 R Membrane-bound peptidyl-prolyl cis-trans isomerase (PPIase); binds to the drugs FK506 and rapamycin; expression pattern suggests possible involvement in ER protein trafficking; relocalizes from nucleus to vacuole upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence ISS] [PMID 7685904]; GO_component: GO:0016020 - membrane [Evidence IBA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005528 - FK506 binding [Evidence IDA] [PMID 1380159]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IBA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence ISS] [PMID 7685904]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0018208 - peptidyl-proline modification [Evidence IBA]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA]; peptidylprolyl isomerase family protein FPR2 complement(4562794..4563546) Sugiyamaella lignohabitans 30033279 AWJ20_1474 CDS FPR2 NC_031672.1 4564212 4564850 R Membrane-bound peptidyl-prolyl cis-trans isomerase (PPIase); binds to the drugs FK506 and rapamycin; expression pattern suggests possible involvement in ER protein trafficking; relocalizes from nucleus to vacuole upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence ISS] [PMID 7685904]; GO_component: GO:0016020 - membrane [Evidence IBA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005528 - FK506 binding [Evidence IDA] [PMID 1380159]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IBA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence ISS] [PMID 7685904]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0018208 - peptidyl-proline modification [Evidence IBA]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA]; peptidylprolyl isomerase family protein FPR2 complement(4564212..4564850) Sugiyamaella lignohabitans 30033280 AWJ20_1475 CDS EMC1 NC_031672.1 4565198 4567969 R Member of conserved endoplasmic reticulum membrane complex; involved in efficient folding of proteins in the ER; null mutant displays induction of the unfolded protein response; interacts with Gal80p; homologous to worm H17B01.4/EMC-1, fly CG2943, and human KIAA0090; GO_component: GO:0072546 - ER membrane protein complex [Evidence IEA]; GO_component: GO:0072546 - ER membrane protein complex [Evidence IDA] [PMID 19325107]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IGI] [PMID 19325107]; Emc1p complement(4565198..4567969) Sugiyamaella lignohabitans 30033281 AWJ20_1476 CDS AWJ20_1476 NC_031672.1 4568495 4569262 D uncharacterized protein 4568495..4569262 Sugiyamaella lignohabitans 30033282 AWJ20_1477 CDS SAC3 NC_031672.1 4569407 4572670 D mRNA export factor; required for biogenesis of the small ribosomal subunit; component of TREX-2 complex (Sac3p-Thp1p-Sus1p-Cdc31p) involved in transcription elongation and mRNA export from the nucleus; involved in post-transcriptional tethering of active genes to the nuclear periphery and to non-nascent mRNP; similar to the human germinal center-associated nuclear protein (GANP); GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 12631707]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0070390 - transcription export complex 2 [Evidence IDA] [PMID 15311284]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12411502]; GO_process: GO:0030029 - actin filament-based process [Evidence IGI] [PMID 2656401]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 18614048]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 12411502]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI,IMP,IPI] [PMID 12631707]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IMP] [PMID 8799844]; GO_process: GO:0071033 - nuclear retention of pre-mRNA at the site of transcription [Evidence IMP] [PMID 18003937]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 18003937]; GO_process: GO:0006611 - protein export from nucleus [Evidence IGI,IMP] [PMID 10716708]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 17537816]; GO_process: GO:0006810 - transport [Evidence IEA]; Sac3p 4569407..4572670 Sugiyamaella lignohabitans 30033283 AWJ20_1478 CDS AWJ20_1478 NC_031672.1 4573014 4575218 R uncharacterized protein complement(4573014..4575218) Sugiyamaella lignohabitans 30033284 AWJ20_1479 CDS AWJ20_1479 NC_031672.1 4578459 4580372 D uncharacterized protein 4578459..4580372 Sugiyamaella lignohabitans 30033285 AWJ20_1480 CDS PPZ1 NC_031672.1 4581563 4583590 R Serine/threonine protein phosphatase Z, isoform of Ppz2p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance; PPZ1 has a paralog, PPZ2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0019897 - extrinsic component of plasma membrane [Evidence IDA] [PMID 16166647]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8824289]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004724 - magnesium-dependent protein serine/threonine phosphatase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 7615085]; GO_process: GO:0034613 - cellular protein localization [Evidence IMP] [PMID 21237705]; GO_process: GO:0006883 - cellular sodium ion homeostasis [Evidence IGI,IMP] [PMID 7768897]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 21237705]; Ppz1p complement(4581563..4583590) Sugiyamaella lignohabitans 30033287 AWJ20_1481 CDS AWJ20_1481 NC_031672.1 4586110 4587756 R uncharacterized protein complement(4586110..4587756) Sugiyamaella lignohabitans 30033288 AWJ20_1482 CDS AWJ20_1482 NC_031672.1 4588644 4599187 D uncharacterized protein join(4588644..4588714,4590370..4599187) Sugiyamaella lignohabitans 30033289 AWJ20_1483 CDS AWJ20_1483 NC_031672.1 4599314 4600180 D Uncharacterized protein YPR117W 4599314..4600180 Sugiyamaella lignohabitans 30033290 AWJ20_1484 CDS AWJ20_1484 NC_031672.1 4600615 4601292 R uncharacterized protein complement(4600615..4601292) Sugiyamaella lignohabitans 30033291 AWJ20_1485 CDS AWJ20_1485 NC_031672.1 4605208 4608444 D uncharacterized protein 4605208..4608444 Sugiyamaella lignohabitans 30033292 AWJ20_1486 CDS RPL32 NC_031672.1 4608924 4609319 R Ribosomal 60S subunit protein L32; overexpression disrupts telomeric silencing; homologous to mammalian ribosomal protein L32, no bacterial homolog; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L32 complement(4608924..4609319) Sugiyamaella lignohabitans 30033293 AWJ20_1487 CDS MDR1 NC_031672.1 4611188 4614076 D Cytoplasmic GTPase-activating protein; activates Ypt/Rab transport GTPases Ypt6p, Ypt31p and Sec4p; involved in recycling of internalized proteins and regulation of Golgi secretory function; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12807768]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IDA,ISS] [PMID 10559187]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 15574876]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; Mdr1p 4611188..4614076 Sugiyamaella lignohabitans 30033294 AWJ20_1488 CDS MIX17 NC_031672.1 4619150 4619614 D Mitochondrial intermembrane space protein; required for normal oxygen consumption; contains twin cysteine-x9-cysteine motifs; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 17095012]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 19703468]; Mix17p 4619150..4619614 Sugiyamaella lignohabitans 30033295 AWJ20_1489 CDS RHO3 NC_031672.1 4620046 4620681 R Non-essential small GTPase of the Rho/Rac family of Ras-like proteins; involved in the establishment of cell polarity; GTPase activity positively regulated by the GTPase activating protein (GAP) Rgd1p; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 10207081]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10207081]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 10207081]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 10526184]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 10588647]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 8852836]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IMP] [PMID 10588647]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IGI,IPI] [PMID 19955214]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IGI] [PMID 8852836]; GO_process: GO:0090338 - positive regulation of formin-nucleated actin cable assembly [Evidence IGI,IMP] [PMID 12810699]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Rho family GTPase RHO3 complement(4620046..4620681) Sugiyamaella lignohabitans 30033296 AWJ20_1490 CDS HLJ1 NC_031672.1 4622449 4623186 D Chaperone protein dnaJ 4622449..4623186 Sugiyamaella lignohabitans 30033298 AWJ20_1491 CDS POR1 NC_031672.1 4623476 4624330 R porin POR1 complement(4623476..4624330) Sugiyamaella lignohabitans 30033299 AWJ20_1492 CDS AWJ20_1492 NC_031672.1 4646296 4648575 R uncharacterized protein complement(4646296..4648575) Sugiyamaella lignohabitans 30033300 AWJ20_1493 CDS AWJ20_1493 NC_031672.1 4649222 4650298 D uncharacterized protein 4649222..4650298 Sugiyamaella lignohabitans 30033301 AWJ20_1494 CDS AWJ20_1494 NC_031672.1 4650348 4653401 R uncharacterized protein complement(4650348..4653401) Sugiyamaella lignohabitans 30033302 AWJ20_1495 CDS AWJ20_1495 NC_031672.1 4654625 4655968 D uncharacterized protein 4654625..4655968 Sugiyamaella lignohabitans 30033303 AWJ20_1496 CDS VPS24 NC_031672.1 4660657 4661334 D One of four subunits of the ESCRT-III complex; forms an endosomal sorting complex required for transport III (ESCRT-III) subcomplex with Did4p; involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway; GO_component: GO:0000815 - ESCRT III complex [Evidence IDA] [PMID 12194857]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9606181]; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IMP] [PMID 19234443]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 9606181]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-III subunit protein VPS24 4660657..4661334 Sugiyamaella lignohabitans 30033304 AWJ20_1497 CDS AWJ20_1497 NC_031672.1 4662392 4665823 D uncharacterized protein 4662392..4665823 Sugiyamaella lignohabitans 30033305 AWJ20_1498 CDS eaf1 NC_031672.1 4666187 4667380 R RNA polymerase II transcription elongation factor SpEAF complement(4666187..4667380) Sugiyamaella lignohabitans 30033306 AWJ20_1499 CDS CCA1 NC_031672.1 4668468 4670057 D ATP (CTP):tRNA-specific tRNA nucleotidyltransferase; different forms targeted to the nucleus, cytosol, and mitochondrion are generated via the use of multiple transcriptional and translational start sites; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence NAS] [PMID 1634528]; GO_component: GO:0005737 - cytoplasm [Evidence NAS] [PMID 8175766]; GO_component: GO:0005737 - cytoplasm [Evidence NAS] [PMID 8617732]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 1634528]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence NAS] [PMID 1634528]; GO_component: GO:0005634 - nucleus [Evidence NAS] [PMID 8175766]; GO_component: GO:0005634 - nucleus [Evidence NAS] [PMID 8617732]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0052929 - ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity [Evidence IEA]; GO_function: GO:0052928 - CTP:3'-cytidine-tRNA cytidylyltransferase activity [Evidence IEA]; GO_function: GO:0052927 - CTP:tRNA cytidylyltransferase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004810 - tRNA adenylyltransferase activity [Evidence IDA] [PMID 1634528]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0001680 - tRNA 3'-terminal CCA addition [Evidence IEA]; GO_process: GO:0001680 - tRNA 3'-terminal CCA addition [Evidence IDA] [PMID 1634528]; Cca1p 4668468..4670057 Sugiyamaella lignohabitans 30033307 AWJ20_1500 CDS CHS2 NC_031672.1 4670305 4672227 R Chitin synthase II; catalyzes transfer of N-acetylglucosamine (GlcNAc) to chitin upon activation of zymogenic form; required for chitin synthesis in the primary septum during cytokinesis; localization regulated by Cdk1p during mitosis; phosphorylation by Dbf2p kinase regulates its dynamics and chitin synthesis during cytokinesis; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA,IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IDA] [PMID 9990311]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IMP] [PMID 11839781]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IDA] [PMID 15772160]; GO_process: GO:0006031 - chitin biosynthetic process [Evidence IEA]; GO_process: GO:0006031 - chitin biosynthetic process [Evidence IMP] [PMID 22573892]; chitin synthase CHS2 complement(4670305..4672227) Sugiyamaella lignohabitans 30033310 AWJ20_1501 CDS AWJ20_1501 NC_031672.1 4672394 4673491 R uncharacterized protein complement(4672394..4673491) Sugiyamaella lignohabitans 30033311 AWJ20_1502 CDS AWJ20_1502 NC_031672.1 4676653 4677591 D NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 4676653..4677591 Sugiyamaella lignohabitans 30033312 AWJ20_1503 CDS MSH6 NC_031672.1 4677812 4680886 R Protein required for mismatch repair in mitosis and meiosis; forms a complex with Msh2p to repair both single-base & insertion-deletion mispairs; also involved in interstrand cross-link repair; potentially phosphorylated by Cdc28p; GO_component: GO:0032301 - MutSalpha complex [Evidence IPI] [PMID 8816473]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000228 - nuclear chromosome [Evidence IBA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 9545323]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9819445]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IBA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IBA]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 10066781]; GO_function: GO:0032137 - guanine/thymine mispair binding [Evidence IDA] [PMID 8816473]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0032138 - single base insertion or deletion binding [Evidence IMP] [PMID 10347163]; GO_function: GO:0032138 - single base insertion or deletion binding [Evidence IDA] [PMID 8816473]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0036297 - interstrand cross-link repair [Evidence IGI] [PMID 22912599]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IBA]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 16702432]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IDA] [PMID 11237611]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 2685551]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 9520271]; GO_process: GO:0045910 - negative regulation of DNA recombination [Evidence IBA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IBA]; GO_process: GO:0009411 - response to UV [Evidence IBA]; mismatch repair ATPase MSH6 complement(4677812..4680886) Sugiyamaella lignohabitans 30033313 AWJ20_1504 CDS ADK2 NC_031672.1 4682483 4683169 R Mitochondrial adenylate kinase; catalyzes the reversible synthesis of GTP and AMP from GDP and ADP; may serve as a back-up for synthesizing GTP or ADP depending on metabolic conditions; 3' sequence of ADK2 varies with strain background; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 15753074]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 8537371]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 8537371]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]; GO_function: GO:0046899 - nucleoside triphosphate adenylate kinase activity [Evidence IEA]; GO_function: GO:0046899 - nucleoside triphosphate adenylate kinase activity [Evidence IDA] [PMID 15753074]; GO_function: GO:0046899 - nucleoside triphosphate adenylate kinase activity [Evidence IDA] [PMID 8537371]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IDA] [PMID 15753074]; GO_process: GO:0046939 - nucleotide phosphorylation [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; adenylate kinase ADK2 complement(4682483..4683169) Sugiyamaella lignohabitans 30033314 AWJ20_1505 CDS ATO2 NC_031672.1 4684160 4684957 R Putative transmembrane protein involved in export of ammonia; ammonia is a starvation signal that promotes cell death in aging colonies; phosphorylated in mitochondria; member of the TC 9.B.33 YaaH family; homolog of Y. lipolytica Gpr1p; ATO2 has a paralog, ADY2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17395151]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IMP] [PMID 12429834]; GO_process: GO:0015696 - ammonium transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEP,IMP] [PMID 12429834]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 12429834]; GO_process: GO:0006810 - transport [Evidence IEA]; putative ammonium permease ATO2 complement(4684160..4684957) Sugiyamaella lignohabitans 30033315 AWJ20_1506 CDS TNA1 NC_031672.1 4685811 4687316 R High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p complement(4685811..4687316) Sugiyamaella lignohabitans 30033316 AWJ20_1507 CDS AWJ20_1507 NC_031672.1 4692800 4694827 D HLH transcription factor (PalcA) 4692800..4694827 Sugiyamaella lignohabitans 30033317 AWJ20_1508 CDS PZF1 NC_031672.1 4695092 4696510 R Transcription factor IIIA (TFIIIA); essential DNA binding protein required for transcription of 5S rRNA by RNA polymerase III; not involved in transcription of other RNAP III genes; nine conserved zinc fingers; may also bind 5S rRNA; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 2642897]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0001002 - RNA polymerase III type 1 promoter sequence-specific DNA binding [Evidence IDA] [PMID 2642897]; GO_function: GO:0001152 - RNA polymerase III type 1 promoter sequence-specific DNA binding TFIIIC recruiting transcription factor activity [Evidence IDA,IMP] [PMID 8496187]; GO_function: GO:0001156 - TFIIIC-class transcription factor binding [Evidence IC] [PMID 8496187]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0042791 - 5S class rRNA transcription from RNA polymerase III type 1 promoter [Evidence IDA] [PMID 2642897]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Pzf1p complement(4695092..4696510) Sugiyamaella lignohabitans 30033318 AWJ20_1509 CDS AWJ20_1509 NC_031672.1 4698684 4702139 D uncharacterized protein 4698684..4702139 Sugiyamaella lignohabitans 30033319 AWJ20_1510 CDS tsn1 NC_031672.1 4702453 4703166 R top hit is XP_007271903.1 originated in Fomitiporia mediterranea MF3/22; translin complement(4702453..4703166) Sugiyamaella lignohabitans 30033321 AWJ20_1511 CDS CCP1 NC_031672.1 4704588 4705757 D Mitochondrial cytochrome-c peroxidase; degrades reactive oxygen species in mitochondria, involved in the response to oxidative stress; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IEA]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IMP] [PMID 10589830]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IDA] [PMID 17580971]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IDA,IMP] [PMID 21334283]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA,IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 10589830]; GO_process: GO:0042744 - hydrogen peroxide catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006979 - response to oxidative stress [Evidence IEA]; Ccp1p 4704588..4705757 Sugiyamaella lignohabitans 30033322 AWJ20_1512 CDS PAM17 NC_031672.1 4705956 4706711 R Constituent of the TIM23 complex; proposed alternatively to be a component of the import motor (PAM complex) or to interact with and modulate the core TIM23 (Translocase of the Inner mitochondrial Membrane) complex; protein abundance increases in response to DNA replication stress; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 16107694]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 16107694]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pam17p complement(4705956..4706711) Sugiyamaella lignohabitans 30033323 AWJ20_1513 CDS GPD2 NC_031672.1 4708215 4709246 R NAD-dependent glycerol 3-phosphate dehydrogenase; expression is controlled by an oxygen-independent signaling pathway required to regulate metabolism under anoxic conditions; located in cytosol and mitochondria; constitutively active but is inactivated via phosphorylation by energy-stress responsive kinase SNF1; GPD2 has a paralog, GPD1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence TAS] [PMID 10781551]; GO_component: GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0004367 - glycerol-3-phosphate dehydrogenase [NAD+] activity [Evidence IEA,IEA]; GO_function: GO:0004367 - glycerol-3-phosphate dehydrogenase [NAD+] activity [Evidence IMP] [PMID 9171333]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IMP] [PMID 9171333]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IMP] [PMID 9171333]; GO_process: GO:0046168 - glycerol-3-phosphate catabolic process [Evidence IEA]; GO_process: GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glycerol-3-phosphate dehydrogenase (NAD(+)) GPD2 complement(4708215..4709246) Sugiyamaella lignohabitans 30033324 AWJ20_1514 CDS AWJ20_1514 NC_031672.1 4713117 4716059 R uncharacterized protein complement(4713117..4716059) Sugiyamaella lignohabitans 30033325 AWJ20_1515 CDS AWJ20_1515 NC_031672.1 4719038 4721731 D uncharacterized protein 4719038..4721731 Sugiyamaella lignohabitans 30033326 AWJ20_1516 CDS AWJ20_1516 NC_031672.1 4722776 4725556 R uncharacterized protein complement(4722776..4725556) Sugiyamaella lignohabitans 30033327 AWJ20_1517 CDS TPT1 NC_031672.1 4726237 4726962 R tRNA 2'-phosphotransferase; catalyzes the final step in yeast tRNA splicing: the transfer of the 2'-PO(4) from the splice junction to NAD(+) to form ADP-ribose 1''-2''cyclic phosphate and nicotinamide; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22391451]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22391451]; GO_function: GO:0000215 - tRNA 2'-phosphotransferase activity [Evidence IEA]; GO_function: GO:0000215 - tRNA 2'-phosphotransferase activity [Evidence IDA] [PMID 9148937]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IDA] [PMID 9148937]; Tpt1p complement(4726237..4726962) Sugiyamaella lignohabitans 30033328 AWJ20_1518 CDS STH1 NC_031672.1 4728767 4732964 D ATPase component of the RSC chromatin remodeling complex; required for expression of early meiotic genes; promotes base excision repair in chromatin; essential helicase-related protein homologous to Snf2p; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 8980231]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1396591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1549132]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 9799253]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0004386 - helicase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0070577 - lysine-acetylated histone binding [Evidence IDA] [PMID 20126658]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 10025404]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 12183366]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 8980231]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 9799253]; GO_process: GO:0006284 - base-excision repair [Evidence IMP] [PMID 24674626]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0031055 - chromatin remodeling at centromere [Evidence IMP] [PMID 12697820]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI] [PMID 12697820]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IGI,IMP] [PMID 12072455]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 16024655]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 10320476]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0016584 - nucleosome positioning [Evidence IMP] [PMID 21343911]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 10320476]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 10329629]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; RSC chromatin remodeling complex ATPase subunit STH1 join(4728767..4728886,4729011..4732964) Sugiyamaella lignohabitans 30033329 AWJ20_1519 CDS SYT1 NC_031672.1 4734447 4737146 D Arf family guanine nucleotide exchange factor SYT1 4734447..4737146 Sugiyamaella lignohabitans 30033330 AWJ20_1520 CDS AWJ20_1520 NC_031672.1 4737291 4739210 D uncharacterized protein 4737291..4739210 Sugiyamaella lignohabitans 30033332 AWJ20_1521 CDS DOS2 NC_031672.1 4739510 4740808 R hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Dos2p complement(4739510..4740808) Sugiyamaella lignohabitans 30033333 AWJ20_1522 CDS OCA6 NC_031672.1 4741312 4741986 D Cytoplasmic protein required for replication of Brome mosaic virus; S. cerevisiae is a model system for studying positive-strand RNA virus replication; null mutation confers sensitivity to tunicamycin and DTT; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO_function: GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0035335 - peptidyl-tyrosine dephosphorylation [Evidence IEA]; Oca6p 4741312..4741986 Sugiyamaella lignohabitans 30033334 AWJ20_1523 CDS GUT2 NC_031672.1 4742679 4744685 R Mitochondrial glycerol-3-phosphate dehydrogenase; expression is repressed by both glucose and cAMP and derepressed by non-fermentable carbon sources in a Snf1p, Rsf1p, Hap2/3/4/5 complex dependent manner; GO_component: GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16689936]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP,ISS] [PMID 8256521]; GO_function: GO:0004368 - glycerol-3-phosphate dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004368 - glycerol-3-phosphate dehydrogenase activity [Evidence IDA] [PMID 12032156]; GO_function: GO:0004368 - glycerol-3-phosphate dehydrogenase activity [Evidence IMP,ISS] [PMID 8256521]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0052590 - sn-glycerol-3-phosphate:ubiquinone oxidoreductase activity [Evidence IEA]; GO_function: GO:0052591 - sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity [Evidence IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 12032156]; GO_process: GO:0019563 - glycerol catabolic process [Evidence IEA]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IMP] [PMID 8256521]; GO_process: GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 18381895]; glycerol-3-phosphate dehydrogenase complement(4742679..4744685) Sugiyamaella lignohabitans 30033335 AWJ20_1524 CDS AWJ20_1524 NC_031672.1 4746538 4747062 D uncharacterized protein 4746538..4747062 Sugiyamaella lignohabitans 30033336 AWJ20_1525 CDS BAS1 NC_031672.1 4748071 4749864 D Myb-related transcription factor; involved in regulating basal and induced expression of genes of the purine and histidine biosynthesis pathways; also involved in regulation of meiotic recombination at specific genes; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9705508]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IDA,IMP] [PMID 16215179]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0001046 - core promoter sequence-specific DNA binding [Evidence IDA] [PMID 1495962]; GO_function: GO:0001046 - core promoter sequence-specific DNA binding [Evidence IDA] [PMID 2683089]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA,IMP] [PMID 1495962]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 1495962]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 3303332]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Bas1p 4748071..4749864 Sugiyamaella lignohabitans 30033337 AWJ20_1526 CDS PAA1 NC_031672.1 4750247 4750939 R Polyamine acetyltransferase; acetylates polyamines (e.g. putrescine, spermidine, spermine) and also aralkylamines (e.g. tryptamine, phenylethylamine); may be involved in transcription and/or DNA replication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004059 - aralkylamine N-acetyltransferase activity [Evidence IDA] [PMID 11559708]; GO_function: GO:0004145 - diamine N-acetyltransferase activity [Evidence IDA,IMP] [PMID 15723835]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006325 - chromatin organization [Evidence IMP] [PMID 15723835]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; Paa1p complement(4750247..4750939) Sugiyamaella lignohabitans 30033338 AWJ20_1527 CDS DDI1 NC_031672.1 4758492 4759784 D DNA damage-inducible v-SNARE binding protein; role in suppression of protein secretion; may play a role in S-phase checkpoint control; has ubiquitin-associated (UBA), ubiquitin-like (UBL), and retroviral-like proteinase (RVP) domains; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10330187]; GO_function: GO:0000149 - SNARE binding [Evidence IDA] [PMID 10330187]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence ISA] [PMID 11516960]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 11323716]; GO_process: GO:0009306 - protein secretion [Evidence IMP] [PMID 21094643]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12051757]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI,IMP] [PMID 10330187]; Ddi1p 4758492..4759784 Sugiyamaella lignohabitans 30033339 AWJ20_1528 CDS GLN3 NC_031672.1 4760072 4761526 R Histone-lysine N-methyltransferase MLL3 complement(4760072..4761526) Sugiyamaella lignohabitans 30033340 AWJ20_1529 CDS PUT3 NC_031672.1 4764313 4767096 D Transcriptional activator; binds specific gene recruitment sequences and is required for DNA zip code-mediated targeting of genes to nuclear periphery; regulates proline utilization genes, constitutively binds PUT1 and PUT2 promoters as a dimer, undergoes conformational change to form active state; binds other promoters only under activating conditions; differentially phosphorylated in presence of different nitrogen sources; has a Zn(2)-Cys(6) binuclear cluster domain; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 1986247]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 1986247]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 8846888]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 8846888]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:2001158 - positive regulation of proline catabolic process to glutamate [Evidence IMP] [PMID 2689862]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 2689862]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8846888]; GO_process: GO:0006560 - proline metabolic process [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 22579222]; Put3p 4764313..4767096 Sugiyamaella lignohabitans 30033341 AWJ20_1530 CDS URB1 NC_031672.1 4767160 4768380 R Protein required for the normal accumulation of 25S and 5.8S rRNAs; nucleolar protein; associated with the 27SA2 pre-ribosomal particle; proposed to be involved in the biogenesis of the 60S ribosomal subunit; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15208443]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15208443]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15208443]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Urb1p complement(4767160..4768380) Sugiyamaella lignohabitans 30033343 AWJ20_1531 CDS URB1 NC_031672.1 4768652 4771975 R Protein required for the normal accumulation of 25S and 5.8S rRNAs; nucleolar protein; associated with the 27SA2 pre-ribosomal particle; proposed to be involved in the biogenesis of the 60S ribosomal subunit; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15208443]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15208443]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15208443]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Urb1p complement(4768652..4771975) Sugiyamaella lignohabitans 30033344 AWJ20_1532 CDS ESF2 NC_031672.1 4772351 4773367 D Essential nucleolar protein involved in pre-18S rRNA processing; binds to RNA and stimulates ATPase activity of Dbp8; involved in assembly of the small subunit (SSU) processome; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 15964808]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15964808]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15964808]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 16772403]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 16772403]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15964808]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15964808]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15964808]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0034462 - small-subunit processome assembly [Evidence IMP] [PMID 15964808]; Esf2p 4772351..4773367 Sugiyamaella lignohabitans 30033345 AWJ20_1533 CDS KRE5 NC_031672.1 4773412 4774896 R Protein required for beta-1,6 glucan biosynthesis; mutations result in aberrant morphology and severe growth defects; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence TAS] [PMID 10601196]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_function: GO:0003980 - UDP-glucose:glycoprotein glucosyltransferase activity [Evidence IEA]; GO_function: GO:0003980 - UDP-glucose:glycoprotein glucosyltransferase activity [Evidence IDA] [PMID 9611196]; GO_process: GO:0006078 - (1->6)-beta-D-glucan biosynthetic process [Evidence TAS] [PMID 8550469]; GO_process: GO:0097359 - UDP-glucosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; Kre5p complement(4773412..4774896) Sugiyamaella lignohabitans 30033346 AWJ20_1534 CDS AWJ20_1534 NC_031672.1 4775348 4778008 R uncharacterized protein complement(4775348..4778008) Sugiyamaella lignohabitans 30033347 AWJ20_1535 CDS DSS1 NC_031672.1 4778318 4781014 R 3'-5' exoribonuclease; component of the mitochondrial degradosome along with the ATP-dependent RNA helicase Suv3p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs; GO_component: GO:0045025 - mitochondrial degradosome [Evidence IDA] [PMID 12426313]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0008859 - exoribonuclease II activity [Evidence IEA]; GO_function: GO:0008859 - exoribonuclease II activity [Evidence IDA] [PMID 12426313]; GO_function: GO:0008859 - exoribonuclease II activity [Evidence IDA] [PMID 17658549]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic [Evidence IEA]; GO_process: GO:0000957 - mitochondrial RNA catabolic process [Evidence IMP] [PMID 12426313]; GO_process: GO:0000957 - mitochondrial RNA catabolic process [Evidence IMP] [PMID 9829834]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Dss1p complement(4778318..4781014) Sugiyamaella lignohabitans 30033348 AWJ20_1536 CDS IPP1 NC_031672.1 4781524 4782279 R Cytoplasmic inorganic pyrophosphatase (PPase); homodimer that catalyzes the rapid exchange of oxygens from Pi with water, highly expressed and essential for viability, active-site residues show identity to those from E. coli PPase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004427 - inorganic diphosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004427 - inorganic diphosphatase activity [Evidence IDA] [PMID 8224193]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IC] [PMID 8224193]; inorganic diphosphatase IPP1 complement(4781524..4782279) Sugiyamaella lignohabitans 30033349 AWJ20_1537 CDS AWJ20_1537 NC_031672.1 4783701 4786376 R uncharacterized protein complement(4783701..4786376) Sugiyamaella lignohabitans 30033350 AWJ20_1538 CDS RPE1 NC_031672.1 4791664 4792233 R D-ribulose-5-phosphate 3-epimerase; catalyzes a reaction in the non-oxidative part of the pentose-phosphate pathway; mutants are sensitive to oxidative stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence TAS] [PMID 11298766]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]; GO_function: GO:0004750 - ribulose-phosphate 3-epimerase activity [Evidence IEA,IEA]; GO_function: GO:0004750 - ribulose-phosphate 3-epimerase activity [Evidence IDA,IMP,ISS] [PMID 8929392]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA,IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IMP] [PMID 8929392]; ribulose-phosphate 3-epimerase RPE1 complement(4791664..4792233) Sugiyamaella lignohabitans 30033351 AWJ20_1541 CDS AWJ20_1541 NC_031672.1 4800562 4801185 D uncharacterized protein 4800562..4801185 Sugiyamaella lignohabitans 30033355 AWJ20_1542 CDS AWJ20_1542 NC_031672.1 4801563 4802747 R Dsc3p complement(4801563..4802747) Sugiyamaella lignohabitans 30033356 AWJ20_1543 CDS AWJ20_1543 NC_031672.1 4803485 4805113 D uncharacterized protein 4803485..4805113 Sugiyamaella lignohabitans 30033357 AWJ20_1544 CDS ODC1 NC_031672.1 4805222 4806028 R Mitochondrial inner membrane transporter; exports 2-oxoadipate and 2-oxoglutarate from the mitochondrial matrix to the cytosol for lysine and glutamate biosynthesis and lysine catabolism; suppresses, in multicopy, an fmc1 null mutation; ODC1 has a paralog, ODC2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11013234]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9178508]; GO_function: GO:0005310 - dicarboxylic acid transmembrane transporter activity [Evidence IDA] [PMID 11013234]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0006839 - mitochondrial transport [Evidence IDA] [PMID 11013234]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Odc1p complement(4805222..4806028) Sugiyamaella lignohabitans 30033358 AWJ20_1545 CDS RRM3 NC_031672.1 4807215 4809335 R DNA helicase involved in rDNA replication and Ty1 transposition; binds to and suppresses DNA damage at G4 motifs in vivo; relieves replication fork pauses at telomeric regions; structurally and functionally related to Pif1p; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence IEA,IEA]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence IPI] [PMID 10693764]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005657 - replication fork [Evidence IEA,IEA]; GO_component: GO:0005657 - replication fork [Evidence IDA,IMP] [PMID 17114583]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IDA] [PMID 12050116]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IMP,ISS] [PMID 10693764]; GO_function: GO:0051880 - G-quadruplex DNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IGI,IMP,IPI] [PMID 10693764]; GO_process: GO:0044806 - G-quadruplex DNA unwinding [Evidence IMP] [PMID 23657261]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 15907372]; GO_process: GO:0097046 - replication fork progression beyond termination site [Evidence IMP] [PMID 20797631]; GO_process: GO:0000723 - telomere maintenance [Evidence IEA]; Rrm3p complement(4807215..4809335) Sugiyamaella lignohabitans 30033359 AWJ20_1546 CDS IDH1 NC_031672.1 4809733 4810926 R Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase; complex catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle; GO_component: GO:0005962 - mitochondrial isocitrate dehydrogenase complex (NAD+) [Evidence IDA] [PMID 16884682]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 8626605]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004449 - isocitrate dehydrogenase (NAD+) activity [Evidence IEA,IEA]; GO_function: GO:0004449 - isocitrate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 16884682]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006102 - isocitrate metabolic process [Evidence IDA] [PMID 16884682]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; isocitrate dehydrogenase (NAD(+)) IDH1 complement(4809733..4810926) Sugiyamaella lignohabitans 30033360 AWJ20_1547 CDS AWJ20_1547 NC_031672.1 4812714 4813121 D uncharacterized protein 4812714..4813121 Sugiyamaella lignohabitans 30033361 AWJ20_1548 CDS ENP2 NC_031672.1 4813296 4815368 R Essential nucleolar protein; required for biogenesis of the small ribosomal subunit; contains WD repeats, interacts with Mpp10p and Bfr2p, and has homology to Spb1p; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IPI] [PMID 14690591]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Enp2p complement(4813296..4815368) Sugiyamaella lignohabitans 30033362 AWJ20_1549 CDS AWJ20_1549 NC_031672.1 4816379 4817002 R uncharacterized protein complement(4816379..4817002) Sugiyamaella lignohabitans 30033363 AWJ20_1550 CDS AWJ20_1550 NC_031672.1 4818600 4820825 D uncharacterized protein 4818600..4820825 Sugiyamaella lignohabitans 30033365 AWJ20_1551 CDS AWJ20_1551 NC_031672.1 4821173 4823281 D uncharacterized protein 4821173..4823281 Sugiyamaella lignohabitans 30033366 AWJ20_1552 CDS AYR1 NC_031672.1 4823432 4824169 R Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase; NADPH-dependent 1-acyl dihydroxyacetone phosphate reductase involved in phosphatidic acid biosynthesis; lipid droplet triacylglycerol lipase involved in the mobilization of non-polar lipids; found in lipid particles, the endoplasmic reticulum and the mitochondrial outer membrane; required for spore germination; role in cell wall biosynthesis; capable of metabolizing steroid hormones; oleic acid inducible; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10617610]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10617610]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0000140 - acylglycerone-phosphate reductase activity [Evidence IEA]; GO_function: GO:0000140 - acylglycerone-phosphate reductase activity [Evidence IMP] [PMID 10617610]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IGI,IMP] [PMID 24187129]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006654 - phosphatidic acid biosynthetic process [Evidence IMP] [PMID 10617610]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI] [PMID 24187129]; acylglycerone-phosphate reductase complement(4823432..4824169) Sugiyamaella lignohabitans 30033367 AWJ20_1553 CDS CIC1 NC_031672.1 4826260 4827318 D Essential protein that interacts with proteasome components; has a potential role in proteasome substrate specificity; also copurifies with 66S pre-ribosomal particles; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11500370]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IDA,IPI] [PMID 11500370]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP,IPI] [PMID 11500370]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0030163 - protein catabolic process [Evidence IDA,IMP,IPI] [PMID 11500370]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IPI] [PMID 15100437]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Cic1p 4826260..4827318 Sugiyamaella lignohabitans 30033368 AWJ20_1554 CDS RDS2 NC_031672.1 4827527 4828987 R Transcription factor involved in regulating gluconeogenesis; also involved in the regulation of glyoxylate cycle genes; member of the zinc cluster family of proteins; confers resistance to ketoconazole; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 17875938]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 17875938]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 17875938]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0071466 - cellular response to xenobiotic stimulus [Evidence IMP] [PMID 11943786]; GO_process: GO:0061415 - negative regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source [Evidence IMP] [PMID 17875938]; GO_process: GO:0035948 - positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17875938]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11943786]; GO_process: GO:0061414 - positive regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source [Evidence IMP] [PMID 17875938]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rds2p complement(4827527..4828987) Sugiyamaella lignohabitans 30033369 AWJ20_1555 CDS COX11 NC_031672.1 4829717 4830490 D Protein required for delivery of copper to Cox1p; mitochondrial inner membrane protein; association with mitochondrial ribosomes suggests that copper delivery may occur during translation of Cox1p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IDA] [PMID 2167832]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10501934]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 15776235]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005761 - mitochondrial ribosome [Evidence IDA] [PMID 15776235]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005507 - copper ion binding [Evidence IEA]; GO_function: GO:0005507 - copper ion binding [Evidence IDA] [PMID 12063264]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 10617659]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 2167832]; Cox11p 4829717..4830490 Sugiyamaella lignohabitans 30033370 AWJ20_1556 CDS AWJ20_1556 NC_031672.1 4830726 4831607 R uncharacterized protein complement(4830726..4831607) Sugiyamaella lignohabitans 30033371 AWJ20_1557 CDS AWJ20_1557 NC_031672.1 4833978 4835381 D uncharacterized protein 4833978..4835381 Sugiyamaella lignohabitans 30033372 AWJ20_1558 CDS NGL2 NC_031672.1 4835459 4836841 R Protein involved in 5.8S rRNA processing; Ccr4p-like RNase required for correct 3'-end formation of 5.8S rRNA at site E; similar to Ngl1p; NGL2 has a paralog, NGL3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IDA] [PMID 12358428]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IMP,ISS] [PMID 12358428]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12358428]; Ngl2p complement(4835459..4836841) Sugiyamaella lignohabitans 30033373 AWJ20_1559 CDS AWJ20_1559 NC_031672.1 4837471 4839897 D uncharacterized protein 4837471..4839897 Sugiyamaella lignohabitans 30033374 AWJ20_1560 CDS KAP114 NC_031672.1 4840059 4843133 R Karyopherin, responsible for nuclear import of specific proteins; cargoes include Spt15p, Sua7p, histones H2A and H2B, and Nap1p; amino terminus shows similarity to those of other importins, particularly Cse1p; localization is primarily nuclear; function is regulated by sumoylation; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10385521]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10385521]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 10385521]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 10385521]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12456659]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042991 - transcription factor import into nucleus [Evidence IMP,IPI] [PMID 15888545]; GO_process: GO:0006810 - transport [Evidence IEA]; Kap114p complement(4840059..4843133) Sugiyamaella lignohabitans 30033376 AWJ20_1561 CDS AMF1 NC_031672.1 4844960 4846576 D Putative paralog of ATR1; but not required for boron tolerance; member of the DHA2 family of drug:H+ antiporters; YOR378W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Amf1p 4844960..4846576 Sugiyamaella lignohabitans 30033377 AWJ20_1562 CDS KTR1 NC_031672.1 4847816 4849120 D Alpha-1,2-mannosyltransferase; involved in O- and N-linked protein glycosylation; type II membrane protein; member of the KRE2/MNT1 mannosyltransferase family; relocalizes from vacuole to cytoplasm upon DNA replication stress; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8631921]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IDA] [PMID 9020857]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IMP] [PMID 9182588]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IGI] [PMID 9182588]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IGI] [PMID 9182588]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; alpha-1,2-mannosyltransferase KTR1 4847816..4849120 Sugiyamaella lignohabitans 30033378 AWJ20_1563 CDS SNF8 NC_031672.1 4849357 4850094 D Component of the ESCRT-II complex; ESCRT-II is involved in ubiquitin-dependent sorting of proteins into the endosome; appears to be functionally related to SNF7; involved in glucose derepression; GO_component: GO:0000814 - ESCRT II complex [Evidence IDA] [PMID 12194858]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000433 - negative regulation of transcription from RNA polymerase II promoter by glucose [Evidence IMP] [PMID 7785322]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 12194858]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-II subunit protein SNF8 4849357..4850094 Sugiyamaella lignohabitans 30033379 AWJ20_1564 CDS AWJ20_1564 NC_031672.1 4850350 4852078 D uncharacterized protein join(4850350..4850455,4850502..4852078) Sugiyamaella lignohabitans 30033380 AWJ20_1565 CDS CDC16 NC_031672.1 4852146 4854383 R Subunit of the anaphase-promoting complex/cyclosome (APC/C); which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; required for sporulation; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 8895471]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0032297 - negative regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 9660930]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA,IMP] [PMID 16481473]; anaphase promoting complex subunit CDC16 complement(4852146..4854383) Sugiyamaella lignohabitans 30033381 AWJ20_1566 CDS RNH70 NC_031672.1 4854908 4856704 D 3'-5' exoribonuclease; required for maturation of 3' ends of 5S rRNA and tRNA-Arg3 from dicistronic transcripts; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10359084]; GO_function: GO:0008408 - 3'-5' exonuclease activity [Evidence ISS] [PMID 9396823]; GO_function: GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IMP] [PMID 10716935]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IGI] [PMID 10716935]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 10716935]; GO_process: GO:0002107 - generation of mature 3'-end of 5S rRNA generated by RNA polymerase III [Evidence IMP] [PMID 10716935]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0034415 - tRNA 3'-trailer cleavage, exonucleolytic [Evidence IMP] [PMID 10716935]; GO_process: GO:0034415 - tRNA 3'-trailer cleavage, exonucleolytic [Evidence IGI,IMP] [PMID 18456844]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Rnh70p 4854908..4856704 Sugiyamaella lignohabitans 30033382 AWJ20_1567 CDS AWJ20_1567 NC_031672.1 4856981 4858120 R uncharacterized protein complement(4856981..4858120) Sugiyamaella lignohabitans 30033383 AWJ20_1568 CDS LYS1 NC_031672.1 4858634 4859749 D Saccharopine dehydrogenase (NAD+, L-lysine-forming); catalyzes the conversion of saccharopine to L-lysine, which is the final step in the lysine biosynthesis pathway; also has mRNA binding activity; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004754 - saccharopine dehydrogenase (NAD+, L-lysine-forming) activity [Evidence IEA,IEA]; GO_function: GO:0004754 - saccharopine dehydrogenase (NAD+, L-lysine-forming) activity [Evidence IDA] [PMID 17002315]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IMP] [PMID 17247984]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence NAS] [PMID 11752249]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence TAS] [PMID 3928261]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; saccharopine dehydrogenase (NAD+, L-lysine-forming) 4858634..4859749 Sugiyamaella lignohabitans 30033384 AWJ20_1569 CDS ERG27 NC_031672.1 4860221 4861024 D 3-keto sterol reductase; catalyzes the last of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; mutants are sterol auxotrophs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11279045]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 12119386]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_function: GO:0000253 - 3-keto sterol reductase activity [Evidence IEA]; GO_function: GO:0000253 - 3-keto sterol reductase activity [Evidence IMP] [PMID 10535978]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 10535978]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; 3-keto-steroid reductase 4860221..4861024 Sugiyamaella lignohabitans 30033385 AWJ20_1570 CDS PTR2 NC_031672.1 4861450 4863261 R Integral membrane peptide transporter; mediates transport of di- and tri-peptides; conserved protein that contains 12 transmembrane domains; PTR2 expression is regulated by the N-end rule pathway via repression by Cup9p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IDA] [PMID 16096264]; GO_function: GO:0015197 - peptide transporter activity [Evidence IMP] [PMID 8264579]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0042937 - tripeptide transporter activity [Evidence IDA] [PMID 16096264]; GO_process: GO:0042938 - dipeptide transport [Evidence IDA] [PMID 16096264]; GO_process: GO:0006857 - oligopeptide transport [Evidence IEA]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015833 - peptide transport [Evidence IMP] [PMID 8264579]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IDA] [PMID 16096264]; Ptr2p complement(4861450..4863261) Sugiyamaella lignohabitans 30033387 AWJ20_1571 CDS AWJ20_1571 NC_031672.1 4866201 4867028 R uncharacterized protein complement(4866201..4867028) Sugiyamaella lignohabitans 30033388 AWJ20_1572 CDS SAC6 NC_031672.1 4867822 4869895 D Fimbrin, actin-bundling protein; cooperates with Scp1p (calponin/transgelin) in the organization and maintenance of the actin cytoskeleton; relocalizes from plasma membrane to cytoplasm upon DNA replication stress; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 3060468]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 3060468]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 2643162]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 3060468]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 12857851]; GO_process: GO:0007015 - actin filament organization [Evidence IMP,IPI] [PMID 8522605]; fimbrin join(4867822..4867842,4867997..4869895) Sugiyamaella lignohabitans 30033389 AWJ20_1573 CDS MCM7 NC_031672.1 4870051 4872420 R Component of the Mcm2-7 hexameric helicase complex; MCM2-7 primes origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation in S-phase; forms an Mcm4p-6p-7p subcomplex; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0097373 - MCM core complex [Evidence IDA] [PMID 13679365]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10704410]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 7708676]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704410]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7708676]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 12480933]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IDA] [PMID 15723534]; GO_function: GO:1990163 - ATP-dependent four-way junction helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 9288745]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9159120]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9288745]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IMP] [PMID 17895243]; GO_function: GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0043142 - single-stranded DNA-dependent ATPase activity [Evidence IDA] [PMID 15723534]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI,IMP] [PMID 10783164]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI,IMP] [PMID 2044962]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IGI,IMP] [PMID 10783164]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 13679365]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 15723534]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 19064704]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 19064704]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 2044962]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IPI] [PMID 9335335]; mini-chromosome maintenance complex protein 7 complement(4870051..4872420) Sugiyamaella lignohabitans 30033390 AWJ20_1574 CDS GCY1 NC_031672.1 4875643 4876572 R Glycerol dehydrogenase; involved in an alternative pathway for glycerol catabolism used under microaerobic conditions; also has mRNA binding activity; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GCY1 has a paralog, YPR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 10818358]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0047953 - glycerol 2-dehydrogenase (NADP+) activity [Evidence IEA]; GO_function: GO:1990042 - glycerol dehydrogenase [NAD(P)+] activity [Evidence IMP] [PMID 22979944]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glycerol 2-dehydrogenase (NADP(+)) GCY1 complement(4875643..4876572) Sugiyamaella lignohabitans 30033391 AWJ20_1575 CDS AWJ20_1575 NC_031672.1 4876950 4878815 R uncharacterized protein complement(4876950..4878815) Sugiyamaella lignohabitans 30033392 AWJ20_1576 CDS FDH1 NC_031672.1 4879881 4880921 D NAD(+)-dependent formate dehydrogenase; may protect cells from exogenous formate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11921099]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IGI,ISS] [PMID 11921099]; GO_function: GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 21246355]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 11921099]; GO_process: GO:0042183 - formate catabolic process [Evidence IGI] [PMID 19564482]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; formate dehydrogenase (NAD+) 4879881..4880921 Sugiyamaella lignohabitans 30033393 AWJ20_1577 CDS FAL1 NC_031672.1 4881090 4881947 R Nucleolar protein required for maturation of 18S rRNA; member of the eIF4A subfamily of DEAD-box ATP-dependent RNA helicases; GO_component: GO:0097078 - FAl1-SGD1 complex [Evidence IPI] [PMID 21576267]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9372960]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISA] [PMID 9372960]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16449634]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; ATP-dependent RNA helicase FAL1 complement(4881090..4881947) Sugiyamaella lignohabitans 30033394 AWJ20_1578 CDS FAL1 NC_031672.1 4882012 4882440 R Nucleolar protein required for maturation of 18S rRNA; member of the eIF4A subfamily of DEAD-box ATP-dependent RNA helicases; GO_component: GO:0097078 - FAl1-SGD1 complex [Evidence IPI] [PMID 21576267]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9372960]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISA] [PMID 9372960]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16449634]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; ATP-dependent RNA helicase FAL1 complement(4882012..4882440) Sugiyamaella lignohabitans 30033395 AWJ20_1579 CDS DAS2 NC_031672.1 4882780 4883637 D hypothetical protein; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription; weak similarity with uridine kinases and with phosphoribokinases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0004849 - uridine kinase activity [Evidence IEA]; GO_process: GO:0044211 - CTP salvage [Evidence IEA]; GO_process: GO:0044206 - UMP salvage [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; putative uridine kinase DAS2 4882780..4883637 Sugiyamaella lignohabitans 30033396 AWJ20_1580 CDS AWJ20_1580 NC_031672.1 4883893 4884732 D FRG1 family protein 4883893..4884732 Sugiyamaella lignohabitans 30033398 AWJ20_1581 CDS NPR2 NC_031672.1 4884804 4886132 R nitrogen permease regulating protein NPR2 complement(4884804..4886132) Sugiyamaella lignohabitans 30033399 AWJ20_1582 CDS HSP60 NC_031672.1 4887045 4888766 D Tetradecameric mitochondrial chaperonin; required for ATP-dependent folding of precursor polypeptides and complex assembly; prevents aggregation and mediates protein refolding after heat shock; role in mtDNA transmission; phosphorylated; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 8097278]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 7902576]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9256426]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 10869431]; GO_function: GO:0051087 - chaperone binding [Evidence IPI] [PMID 9256426]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 10869431]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 1359644]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 1978929]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0051131 - chaperone-mediated protein complex assembly [Evidence IMP] [PMID 2645524]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP] [PMID 1347713]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 8097278]; GO_process: GO:0042026 - protein refolding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IMP] [PMID 1359644]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9256426]; GO_process: GO:0050821 - protein stabilization [Evidence IMP] [PMID 1359644]; GO_process: GO:0006950 - response to stress [Evidence IEA]; chaperone ATPase HSP60 4887045..4888766 Sugiyamaella lignohabitans 30033400 AWJ20_1585 CDS HTZ1 NC_031672.1 4890788 4891183 D Histone variant H2AZ; exchanged for histone H2A in nucleosomes by the SWR1 complex; involved in transcriptional regulation through prevention of the spread of silent heterochromatin; Htz1p-containing nucleosomes facilitate RNA Pol II passage by affecting correct assembly and modification status of RNA Pol II elongation complexes and by favoring efficient nucleosome remodeling; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA,IPI] [PMID 11081628]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA,IPI] [PMID 11090616]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 24390141]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IGI,ISS] [PMID 11000274]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11081628]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 21357739]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI,IPI] [PMID 11090616]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 17660569]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 11081628]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; histone H2AZ 4890788..4891183 Sugiyamaella lignohabitans 30033403 AWJ20_1586 CDS GCV1 NC_031672.1 4891926 4893143 D T subunit of the mitochondrial glycine decarboxylase complex; glycine decarboxylase is required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005960 - glycine cleavage complex [Evidence ISS] [PMID 9047339]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004047 - aminomethyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IMP] [PMID 9047339]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006546 - glycine catabolic process [Evidence IEA]; GO_process: GO:0006546 - glycine catabolic process [Evidence IC] [PMID 9047339]; GO_process: GO:0006544 - glycine metabolic process [Evidence IMP] [PMID 9047339]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IGI,IMP] [PMID 10871621]; glycine decarboxylase subunit T 4891926..4893143 Sugiyamaella lignohabitans 30033404 AWJ20_1587 CDS AWJ20_1587 NC_031672.1 4893253 4893681 R OPA3-like protein complement(4893253..4893681) Sugiyamaella lignohabitans 30033405 AWJ20_1588 CDS ATP3 NC_031672.1 4895415 4896152 D Gamma subunit of the F1 sector of mitochondrial F1F0 ATP synthase; F1F0 ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005756 - mitochondrial proton-transporting ATP synthase, central stalk [Evidence IDA] [PMID 17082766]; GO_component: GO:0005756 - mitochondrial proton-transporting ATP synthase, central stalk [Evidence IMP] [PMID 7929329]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA,IEA]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IDA] [PMID 15294286]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 15294286]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IMP] [PMID 7929329]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP] [PMID 7929329]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit gamma 4895415..4896152 Sugiyamaella lignohabitans 30033406 AWJ20_1589 CDS AWJ20_1589 NC_031672.1 4896660 4897931 D uncharacterized protein 4896660..4897931 Sugiyamaella lignohabitans 30033407 AWJ20_1590 CDS CST26 NC_031672.1 4898137 4899372 R Putative transferase involved in phospholipid biosynthesis; required for incorporation of stearic acid into phosphatidylinositol; affects chromosome stability when overexpressed; CST26 has a paralog, YDR018C, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence ISS] [PMID 9259571]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence ISS] [PMID 9259571]; Cst26p complement(4898137..4899372) Sugiyamaella lignohabitans 30033409 AWJ20_1591 CDS QDR3 NC_031672.1 4900317 4902167 D Multidrug transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; has a role in polyamine homeostasis; involved in spore wall asembly; sequence similarity to DTR1 and QDR1, and the triple mutant dtr1 qdr1 qdr3 exhibits reduced dityrosine fluorescence relative to the single mutants; expression is upregulated under polyamine stress; required for resistance to quinidine, barban, cisplatin, and bleomycin; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15649438]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IMP] [PMID 15649438]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 21148207]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IGI] [PMID 23966878]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IMP] [PMID 15649438]; GO_process: GO:0010509 - polyamine homeostasis [Evidence IMP] [PMID 21148207]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Qdr3p 4900317..4902167 Sugiyamaella lignohabitans 30033410 AWJ20_1592 CDS HRD1 NC_031672.1 4903858 4905342 D Ubiquitin-protein ligase; functions in ER retention of misfolded proteins; required for ER-associated degradation (ERAD) of misfolded proteins; genetically linked to the unfolded protein response (UPR); regulated through association with Hrd3p; contains an H2 ring finger; likely plays a general role in targeting proteins that persistently associate with and potentially obstruct the ER-localized translocon; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000838 - Hrd1p ubiquitin ligase ERAD-M complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 11139575]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 9437001]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 11139575]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IGI,IMP] [PMID 11146622]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP,IPI] [PMID 11146622]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 22298424]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 22298424]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 18971375]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 24292014]; E3 ubiquitin-protein ligase HRD1 4903858..4905342 Sugiyamaella lignohabitans 30033411 AWJ20_1593 CDS AWJ20_1593 NC_031672.1 4905451 4906689 R uncharacterized protein complement(4905451..4906689) Sugiyamaella lignohabitans 30033412 AWJ20_1594 CDS AWJ20_1594 NC_031672.1 4906863 4907630 R phosphomethylpyrimidine kinase (predicted) complement(4906863..4907630) Sugiyamaella lignohabitans 30033413 AWJ20_1595 CDS AWJ20_1595 NC_031672.1 4908389 4909999 R uncharacterized protein complement(4908389..4909999) Sugiyamaella lignohabitans 30033414 AWJ20_1596 CDS GRX2 NC_031672.1 4910375 4910731 D Cytoplasmic glutaredoxin; thioltransferase, glutathione-dependent disulfide oxidoreductase involved in maintaining redox state of target proteins, also exhibits glutathione peroxidase activity, expression induced in response to stress; GRX2 has two in-frame start codons resulting in a shorter isoform that is retained in the cytosol and a longer form translocated to the mitochondrial matrix; GRX2 has a paralog, GRX1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11958675]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11958675]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence IMP,ISS] [PMID 9571241]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IDA] [PMID 12684511]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IDA] [PMID 18992757]; GO_function: GO:0004364 - glutathione transferase activity [Evidence IDA] [PMID 12684511]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 9571241]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; dithiol glutaredoxin GRX2 4910375..4910731 Sugiyamaella lignohabitans 30033415 AWJ20_1597 CDS AWJ20_1597 NC_031672.1 4910932 4912122 R Fungal Genetics Stock Center 12068; Fungal Genetics Stock Center 12069; 4-hydroxyphenylpyruvate dioxygenase complement(4910932..4912122) Sugiyamaella lignohabitans 30033416 AWJ20_1598 CDS AWJ20_1598 NC_031672.1 4913172 4913852 R uncharacterized protein complement(4913172..4913852) Sugiyamaella lignohabitans 30033417 AWJ20_1599 CDS AWJ20_1599 NC_031672.1 4918136 4919398 D uncharacterized protein 4918136..4919398 Sugiyamaella lignohabitans 30033418 AWJ20_1600 CDS AIM25 NC_031672.1 4920653 4921765 R hypothetical protein; non-tagged protein is detected in purified mitochondria in high-throughput studies; similar to murine NOR1; null mutant is viable and displays elevated frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Aim25p complement(4920653..4921765) Sugiyamaella lignohabitans 30033421 AWJ20_1601 CDS RSM26 NC_031672.1 4922299 4923084 D Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_function: GO:0004784 - superoxide dismutase activity [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006801 - superoxide metabolic process [Evidence IEA]; mitochondrial 37S ribosomal protein RSM26 4922299..4923084 Sugiyamaella lignohabitans 30033422 AWJ20_1602 CDS VPS25 NC_031672.1 4924201 4924836 D Component of the ESCRT-II complex; ESCRT-II is involved in ubiquitin-dependent sorting of proteins into the endosome; GO_component: GO:0000814 - ESCRT II complex [Evidence IDA] [PMID 12194858]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA,IMP] [PMID 15329733]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA,IMP] [PMID 15469844]; GO_process: GO:0000433 - negative regulation of transcription from RNA polymerase II promoter by glucose [Evidence IMP] [PMID 11278625]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 12194858]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-II subunit protein VPS25 4924201..4924836 Sugiyamaella lignohabitans 30033423 AWJ20_1603 CDS REG1 NC_031672.1 4927695 4931030 D protein phosphatase regulator REG1 4927695..4931030 Sugiyamaella lignohabitans 30033424 AWJ20_1604 CDS VPS54 NC_031672.1 4931620 4934535 D Component of the GARP (Golgi-associated retrograde protein) complex; GARP is required for the recycling of proteins from endosomes to the late Golgi, and for mitosis after DNA damage induced checkpoint arrest; potentially phosphorylated by Cdc28p; members of the GARP complex are Vps51p-Vps52p-Vps53p-Vps54p; GO_component: GO:0000938 - GARP complex [Evidence IPI] [PMID 10637310]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 10637310]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 10637310]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 17645731]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IDA] [PMID 12686613]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps54p 4931620..4934535 Sugiyamaella lignohabitans 30033425 AWJ20_1605 CDS AWJ20_1605 NC_031672.1 4934662 4935669 D uncharacterized protein 4934662..4935669 Sugiyamaella lignohabitans 30033426 AWJ20_1606 CDS ELM3 NC_031672.1 4937060 4938541 D Uncharacterized protein YLL007C 4937060..4938541 Sugiyamaella lignohabitans 30033427 AWJ20_1607 CDS DRS1 NC_031672.1 4938634 4940931 R Nucleolar DEAD-box protein required for ribosome assembly and function; including synthesis of 60S ribosomal subunits; constituent of 66S pre-ribosomal particles; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISA] [PMID 1454790]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 1454790]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 1454790]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Drs1p complement(4938634..4940931) Sugiyamaella lignohabitans 30033428 AWJ20_1608 CDS MRD1 NC_031672.1 4941177 4943678 D Essential conserved small ribosomal subunit (40s) synthesis factor; component of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains and binds to the pre-rRNA at two sites within the 18S region; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 23193268]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11884397]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042134 - rRNA primary transcript binding [Evidence IDA] [PMID 23193268]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11884397]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11884397]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11884397]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0034462 - small-subunit processome assembly [Evidence IMP] [PMID 18586827]; Mrd1p 4941177..4943678 Sugiyamaella lignohabitans 30033429 AWJ20_1609 CDS ENV9 NC_031672.1 4944086 4945051 D Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p 4944086..4945051 Sugiyamaella lignohabitans 30033430 AWJ20_1610 CDS ENV9 NC_031672.1 4945244 4946209 R Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p complement(4945244..4946209) Sugiyamaella lignohabitans 30033432 AWJ20_1611 CDS NAN1 NC_031672.1 4947140 4949533 D U3 snoRNP protein; component of the small (ribosomal) subunit (SSU) processosome containing U3 snoRNA; required for the biogenesis of18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030869 - RENT complex [Evidence IPI] [PMID 10219244]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 15489292]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Nan1p 4947140..4949533 Sugiyamaella lignohabitans 30033433 AWJ20_1612 CDS KAP120 NC_031672.1 4951369 4954329 D Karyopherin responsible for the nuclear import of Rfp1p; Rfp1p is a ribosome maturation factor; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16581791]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA,IMP] [PMID 20219973]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,IPI] [PMID 16581791]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042991 - transcription factor import into nucleus [Evidence IMP,IPI] [PMID 20219973]; GO_process: GO:0006810 - transport [Evidence IEA]; Kap120p 4951369..4954329 Sugiyamaella lignohabitans 30033434 AWJ20_1613 CDS PTP2 NC_031672.1 4954398 4957256 R tyrosine protein phosphatase PTP2 complement(4954398..4957256) Sugiyamaella lignohabitans 30033435 AWJ20_1614 CDS RNY1 NC_031672.1 4961462 4962730 R Vacuolar RNase of the T(2) family; relocalizes to the cytosol where it cleaves tRNAs upon oxidative or stationary phase stress; promotes apoptosis under stress conditions and this function is independent of its catalytic activity; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19332891]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 11158587]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 24102742]; GO_component: GO:0005775 - vacuolar lumen [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IDA] [PMID 19332891]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 11158587]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IMP] [PMID 19332891]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0033897 - ribonuclease T2 activity [Evidence IEA,IEA]; GO_process: GO:0006401 - RNA catabolic process [Evidence IMP] [PMID 19332891]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IGI] [PMID 19332891]; GO_process: GO:0000902 - cell morphogenesis [Evidence IMP] [PMID 11158587]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Rny1p complement(4961462..4962730) Sugiyamaella lignohabitans 30033436 AWJ20_1615 CDS AWJ20_1615 NC_031672.1 4963082 4965064 R uncharacterized protein complement(4963082..4965064) Sugiyamaella lignohabitans 30033437 AWJ20_1616 CDS RNR1 NC_031672.1 4965400 4967766 R Major isoform of large subunit of ribonucleotide-diphosphate reductase; the RNR complex catalyzes rate-limiting step in dNTP synthesis, regulated by DNA replication and DNA damage checkpoint pathways via localization of small subunits; relative distribution to the nucleus increases upon DNA replication stress; RNR1 has a paralog, RNR3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12732713]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9315670]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]; GO_component: GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IDA] [PMID 10716984]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IDA] [PMID 16537479]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA,IEA]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 10535923]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 10716984]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 11893751]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IMP] [PMID 8552025]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA,IEA]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IDA] [PMID 10535923]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IDA] [PMID 5459124]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; ribonucleotide-diphosphate reductase subunit RNR1 complement(4965400..4967766) Sugiyamaella lignohabitans 30033438 AWJ20_1617 CDS VPS30 NC_031672.1 4968383 4969825 R Subunit of phosphatidylinositol (PtdIns) 3-kinase complexes I and II; Complex I is essential in autophagy and Complex II is required for vacuolar protein sorting; required for overflow degradation of misfolded proteins when ERAD is saturated; C-terminus has a novel globular fold that is essential for autophagy through the targeting of the PI3-kinase complex I to the pre-autophagosomal structure; ortholog of the higher eukaryotic gene Beclin 1; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9105038]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 9105038]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 9712845]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0034271 - phosphatidylinositol 3-kinase complex I [Evidence IDA] [PMID 11157979]; GO_component: GO:0034272 - phosphatidylinositol 3-kinase complex II [Evidence IDA] [PMID 11157979]; GO_component: GO:0034045 - pre-autophagosomal structure membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 9105038]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 9712845]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 22437838]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 11157979]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 11157979]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 21121900]; GO_process: GO:0006661 - phosphatidylinositol biosynthetic process [Evidence IMP] [PMID 12244127]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IGI,IMP] [PMID 12244127]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps30p complement(4968383..4969825) Sugiyamaella lignohabitans 30033439 AWJ20_1618 CDS GEP3 NC_031672.1 4970275 4971906 R Protein required for mitochondrial ribosome small subunit biogenesis; null mutant is defective in respiration and in maturation of 15S rRNA; protein is localized to the mitochondrial inner membrane; null mutant interacts synthetically with prohibitin (Phb1p); GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 22621929]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IBA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IMP] [PMID 22621929]; Gep3p complement(4970275..4971906) Sugiyamaella lignohabitans 30033440 AWJ20_1619 CDS MEP3 NC_031672.1 4972333 4973940 R Ammonium permease of high capacity and low affinity; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation ammonia permease; MEP3 has a paralog, MEP1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence TAS] [PMID 11486013]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 9234685]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IDA,IMP,ISS] [PMID 9234685]; GO_process: GO:0072488 - ammonium transmembrane transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEA,IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IMP,ISS] [PMID 9234685]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 9234685]; GO_process: GO:0006810 - transport [Evidence IEA]; ammonium permease MEP3 complement(4972333..4973940) Sugiyamaella lignohabitans 30033441 AWJ20_1620 CDS AWJ20_1620 NC_031672.1 4974414 4976042 R uncharacterized protein complement(4974414..4976042) Sugiyamaella lignohabitans 30033443 AWJ20_1621 CDS SOG2 NC_031672.1 4976201 4979170 R Key component of the RAM signaling network; required for proper cell morphogenesis and cell separation after mitosis; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 12972564]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 12972564]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12972564]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IMP] [PMID 12972564]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000920 - cytokinetic cell separation [Evidence IMP] [PMID 12972564]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 12972564]; Sog2p complement(4976201..4979170) Sugiyamaella lignohabitans 30033444 AWJ20_1622 CDS GSP2 NC_031672.1 4979790 4980179 R GTP binding protein (mammalian Ranp homolog); involved in the maintenance of nuclear organization, RNA processing and transport; interacts with Kap121p, Kap123p and Pdr6p (karyophilin betas); not required for viability; protein abundance increases in response to DNA replication stress; GSP2 has a paralog, GSP1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IGI,ISS] [PMID 8455603]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IGI,ISS] [PMID 8455603]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IEA]; GO_process: GO:0006997 - nucleus organization [Evidence IGI,ISS] [PMID 8455603]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ran GTPase GSP2 complement(4979790..4980179) Sugiyamaella lignohabitans 30033445 AWJ20_1623 CDS AWJ20_1623 NC_031672.1 4982728 4983645 D uncharacterized protein 4982728..4983645 Sugiyamaella lignohabitans 30033446 AWJ20_1624 CDS AWJ20_1624 NC_031672.1 4983685 4984317 R uncharacterized protein complement(4983685..4984317) Sugiyamaella lignohabitans 30033447 AWJ20_1625 CDS TFB6 NC_031672.1 4988536 4989165 D Subunit of TFIIH complex; facilities dissociation of the Ssl2p helices from TFIIH; expression levels regulated by Arg5,6p; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 22411836]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; TFIIH complex subunit TFB6 4988536..4989165 Sugiyamaella lignohabitans 30033448 AWJ20_1626 CDS ULS1 NC_031672.1 4989316 4991352 R translocase ULS1 complement(4989316..4991352) Sugiyamaella lignohabitans 30033449 AWJ20_1627 CDS ULS1 NC_031672.1 4991398 4993407 R translocase ULS1 complement(4991398..4993407) Sugiyamaella lignohabitans 30033450 AWJ20_1628 CDS PDC1 NC_031672.1 4993946 4995739 R Major of three pyruvate decarboxylase isozymes; key enzyme in alcoholic fermentation; decarboxylates pyruvate to acetaldehyde; involved in amino acid catabolism; subject to glucose-, ethanol-, and autoregulation; activated by phosphorylation in response to glucose levels; N-terminally propionylated in vivo; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 2665820]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16850348]; GO_function: GO:0047433 - branched-chain-2-oxoacid decarboxylase activity [Evidence IMP] [PMID 9546164]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IEA]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IDA] [PMID 23423327]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IDA] [PMID 2404950]; GO_function: GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IGI] [PMID 12499363]; GO_process: GO:0000955 - amino acid catabolic process via Ehrlich pathway [Evidence IEA]; GO_process: GO:0000949 - aromatic amino acid family catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IDA] [PMID 2404950]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IDA] [PMID 2404950]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IGI] [PMID 12499363]; indolepyruvate decarboxylase 1 complement(4993946..4995739) Sugiyamaella lignohabitans 30033451 AWJ20_1629 CDS PCT1 NC_031672.1 4997146 4998708 D Cholinephosphate cytidylyltransferase; a rate-determining enzyme of the CDP-choline pathway for phosphatidylcholine synthesis, inhibited by Sec14p, activated upon lipid-binding; contains an element within the regulatory domain involved in both silencing and activation of enzymatic activity; GO_component: GO:0005794 - Golgi apparatus [Evidence TAS] [PMID 10397762]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 12200438]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12200438]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004105 - choline-phosphate cytidylyltransferase activity [Evidence IEA]; GO_function: GO:0004105 - choline-phosphate cytidylyltransferase activity [Evidence IDA] [PMID 2826147]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006657 - CDP-choline pathway [Evidence IDA] [PMID 10397762]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IDA] [PMID 10397762]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; choline-phosphate cytidylyltransferase 4997146..4998708 Sugiyamaella lignohabitans 30033452 AWJ20_1630 CDS RAD2 NC_031672.1 5002073 5005195 R ssDNA endodeoxyribonuclease RAD2 complement(5002073..5005195) Sugiyamaella lignohabitans 30033454 AWJ20_1631 CDS IKI1 NC_031672.1 5005924 5006391 D Subunit of hexameric RecA-like ATPase Elp456 Elongator subcomplex; which is required for modification of wobble nucleosides in tRNA; iki1 mutations confer resistance to the K. lactis toxin zymocin; GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IDA] [PMID 11689709]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12139626]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12139626]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 22343726]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 22343726]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 15769872]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Elongator subunit IKI1 5005924..5006391 Sugiyamaella lignohabitans 30033455 AWJ20_1632 CDS APL6 NC_031672.1 5006849 5009104 D Beta3-like subunit of the yeast AP-3 complex; functions in transport of alkaline phosphatase to the vacuole via the alternate pathway; exists in both cytosolic and peripherally associated membrane-bound pools; GO_component: GO:0030123 - AP-3 adaptor complex [Evidence IEA]; GO_component: GO:0030123 - AP-3 adaptor complex [Evidence IMP] [PMID 9250663]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 9335339]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 17895371]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Apl6p 5006849..5009104 Sugiyamaella lignohabitans 30033456 AWJ20_1633 CDS HSH155 NC_031672.1 5009207 5012638 R U2-snRNP associated splicing factor; forms extensive associations with the branch site-3' splice site-3' exon region upon prespliceosome formation; similarity to the mammalian U2 snRNP-associated splicing factor SAP155; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 15565172]; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 16314500]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 12773561]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 16314500]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IPI,ISS] [PMID 10688664]; Hsh155p complement(5009207..5012638) Sugiyamaella lignohabitans 30033457 AWJ20_1634 CDS GPI16 NC_031672.1 5012854 5014683 D Subunit of the glycosylphosphatidylinositol transamidase complex; transmembrane protein; adds GPIs to newly synthesized proteins; human PIG-Tp homolog; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IEA]; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IDA] [PMID 11598210]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003923 - GPI-anchor transamidase activity [Evidence IC,IMP] [PMID 11598210]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IMP] [PMID 11598210]; Gpi16p 5012854..5014683 Sugiyamaella lignohabitans 30033458 AWJ20_1635 CDS BUB1 NC_031672.1 5014770 5016362 R protein kinase BUB1 complement(5014770..5016362) Sugiyamaella lignohabitans 30033459 AWJ20_1636 CDS MAD3 NC_031672.1 5016591 5017637 R Subunit of spindle-assembly checkpoint complex; involved in delaying anaphase onset in cells with defects in mitotic spindle assembly; pseudosubstrate inhibitor of APC(Cdc20), the anaphase promoting complex involved in securin (Pds1p) turnover; MAD3 has a paralog, BUB1, that arose from the whole genome duplication; GO_component: GO:0033597 - mitotic checkpoint complex [Evidence IMP,IPI] [PMID 10704439]; GO_component: GO:0033597 - mitotic checkpoint complex [Evidence IDA,IPI] [PMID 11726501]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000075 - cell cycle checkpoint [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0032837 - distributive segregation [Evidence IMP] [PMID 15951820]; GO_process: GO:0044774 - mitotic DNA integrity checkpoint [Evidence IGI] [PMID 16651657]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI,IMP] [PMID 10704439]; Mad3p complement(5016591..5017637) Sugiyamaella lignohabitans 30033460 AWJ20_1637 CDS ADE2 NC_031672.1 5017919 5019619 D Phosphoribosylaminoimidazole carboxylase; catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway; red pigment accumulates in mutant cells deprived of adenine; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IMP] [PMID 5767024]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IC] [PMID 5767024]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IMP] [PMID 8939809]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IC] [PMID 5767024]; phosphoribosylaminoimidazole carboxylase ADE2 5017919..5019619 Sugiyamaella lignohabitans 30033461 AWJ20_1638 CDS AWJ20_1638 NC_031672.1 5019238 5019510 R transcriptional regulator complement(5019238..5019510) Sugiyamaella lignohabitans 30033462 AWJ20_1639 CDS VTC4 NC_031672.1 5019793 5022000 R Vacuolar membrane polyphosphate polymerase; subunit of the vacuolar transporter chaperone (VTC) complex involved in synthesis and transfer of polyP to the vacuole; regulates membrane trafficking; role in non-autophagic vacuolar fusion; protein abundance increases in response to DNA replication stress; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17079729]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031310 - intrinsic component of vacuolar membrane [Evidence IDA] [PMID 12584253]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0033254 - vacuolar transporter chaperone complex [Evidence IPI] [PMID 11823419]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0008976 - polyphosphate kinase activity [Evidence IDA] [PMID 19390046]; GO_process: GO:0016237 - microautophagy [Evidence IDA,IMP] [PMID 17079729]; GO_process: GO:0006797 - polyphosphate metabolic process [Evidence IMP] [PMID 11102525]; GO_process: GO:0006797 - polyphosphate metabolic process [Evidence IMP] [PMID 19390046]; GO_process: GO:0007034 - vacuolar transport [Evidence IDA,IMP] [PMID 17079729]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 11823419]; Vtc4p complement(5019793..5022000) Sugiyamaella lignohabitans 30033463 AWJ20_1640 CDS SCL1 NC_031672.1 5025136 5025561 D Alpha 1 subunit of the 20S proteasome; involved in the degradation of ubiquitinated substrates; 20S proteasome is the core complex of the 26S proteasome; essential for growth; detected in the mitochondria; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 9087403]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IC] [PMID 9087403]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 1 5025136..5025561 Sugiyamaella lignohabitans 30033465 AWJ20_1641 CDS AGE2 NC_031672.1 5027240 5028820 D ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector; involved in Trans-Golgi-Network (TGN) transport; contains C2C2H2 cysteine/histidine motif; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IEA]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IDA] [PMID 12627398]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IGI,ISS] [PMID 9677411]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,ISS] [PMID 9677411]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,ISS] [PMID 9677411]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA,IEA]; GO_process: GO:0032312 - regulation of ARF GTPase activity [Evidence IEA]; Age2p 5027240..5028820 Sugiyamaella lignohabitans 30033466 AWJ20_1642 CDS NOP15 NC_031672.1 5029048 5029944 R Constituent of 66S pre-ribosomal particles; involved in 60S ribosomal subunit biogenesis; localizes to both nucleolus and cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11583614]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10953080]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000915 - actomyosin contractile ring assembly [Evidence IMP] [PMID 14657029]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop15p complement(5029048..5029944) Sugiyamaella lignohabitans 30033467 AWJ20_1643 CDS CPT1 NC_031672.1 5032323 5033330 R Cholinephosphotransferase; required for phosphatidylcholine biosynthesis and for inositol-dependent regulation of EPT1 transcription; CPT1 has a paralog, EPT1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8543066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 2153142]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 3005242]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_function: GO:0004142 - diacylglycerol cholinephosphotransferase activity [Evidence IEA]; GO_function: GO:0004142 - diacylglycerol cholinephosphotransferase activity [Evidence IDA,IMP] [PMID 3029130]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006657 - CDP-choline pathway [Evidence IDA,IMP] [PMID 3029130]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; diacylglycerol cholinephosphotransferase complement(5032323..5033330) Sugiyamaella lignohabitans 30033468 AWJ20_1645 CDS AWJ20_1645 NC_031672.1 5035381 5035764 D uncharacterized protein 5035381..5035764 Sugiyamaella lignohabitans 30033470 AWJ20_1646 CDS PIC2 NC_031672.1 5036873 5038517 D Mitochondrial phosphate carrier; imports inorganic phosphate into mitochondria; functionally redundant with Mir1p but less abundant than Mir1p under normal conditions; expression is induced at high temperature; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14756774]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005315 - inorganic phosphate transmembrane transporter activity [Evidence IDA] [PMID 14756774]; GO_process: GO:0006817 - phosphate ion transport [Evidence IDA] [PMID 14756774]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 14756774]; GO_process: GO:0006810 - transport [Evidence IEA]; Pic2p join(5036873..5037107,5037667..5038517) Sugiyamaella lignohabitans 30033471 AWJ20_1647 CDS TEP1 NC_031672.1 5038901 5039926 D PTEN homolog with no demonstrated inositol lipid phosphatase activity; plays a role in normal sporulation; homolog of human tumor suppressor gene PTEN/MMAC1/TEP1 and fission yeast ptn1; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15913452]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA]; GO_function: GO:0016314 - phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity [Evidence IEA]; GO_function: GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO_function: GO:0008138 - protein tyrosine/serine/threonine phosphatase activity [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 11070083]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0035335 - peptidyl-tyrosine dephosphorylation [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence NAS] [PMID 11395408]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IGI] [PMID 15913452]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; Tep1p 5038901..5039926 Sugiyamaella lignohabitans 30033472 AWJ20_1648 CDS LSM12 NC_031672.1 5040086 5040706 R hypothetical protein that may function in RNA processing; interacts with Pbp1p and Pbp4p and associates with ribosomes; contains an RNA-binding LSM domain and an AD domain; GFP-fusion protein is induced by the DNA-damaging agent MMS; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 20368989]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 15225602]; GO_process: GO:0016070 - RNA metabolic process [Evidence ISS] [PMID 15225602]; GO_process: GO:0016070 - RNA metabolic process [Evidence IPI] [PMID 16702403]; Lsm12p complement(5040086..5040706) Sugiyamaella lignohabitans 30033473 AWJ20_1649 CDS FAR11 NC_031672.1 5041730 5043817 D Protein involved in recovery from cell cycle arrest; acts in response to pheromone; also involved in regulation of intra-S DNA damage checkpoint and autophagy; is essential for dephosphorylation of Atg13p; interacts with Far3p, Far7p, Far8p, Far9p, Far10p and with the phosphatases Pph21p, Pph22p and Pph3p; has similarity to the N- and C-termini of N. crassa HAM-2; similar to human Fam40A and Fam40B; GO_component: GO:0000138 - Golgi trans cisterna [Evidence IDA] [PMID 22782902]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23625923]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0031573 - intra-S DNA damage checkpoint [Evidence IMP] [PMID 22782902]; GO_process: GO:0016239 - positive regulation of macroautophagy [Evidence IMP] [PMID 22782902]; GO_process: GO:0000321 - re-entry into mitotic cell cycle after pheromone arrest [Evidence IGI] [PMID 12588993]; Far11p 5041730..5043817 Sugiyamaella lignohabitans 30033474 AWJ20_1650 CDS AWJ20_1650 NC_031672.1 5045026 5047401 R uncharacterized protein complement(5045026..5047401) Sugiyamaella lignohabitans 30033476 AWJ20_1651 CDS AWJ20_1651 NC_031672.1 5047869 5048501 R uncharacterized protein complement(5047869..5048501) Sugiyamaella lignohabitans 30033477 AWJ20_1652 CDS HOS2 NC_031672.1 5051057 5052247 R Histone deacetylase and subunit of Set3 and Rpd3L complexes; required for gene activation via specific deacetylation of lysines in H3 and H4 histone tails; subunit of the Set3 complex, a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; co-localizes with Cmr1p in nuclear foci in response to DNA damage by MMS; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0017136 - NAD-dependent histone deacetylase activity [Evidence IDA] [PMID 11711434]; GO_function: GO:0032041 - NAD-dependent histone deacetylase activity (H3-K14 specific) [Evidence IEA]; GO_function: GO:0097372 - NAD-dependent histone deacetylase activity (H3-K18 specific) [Evidence IEA]; GO_function: GO:0046969 - NAD-dependent histone deacetylase activity (H3-K9 specific) [Evidence IEA]; GO_function: GO:0046970 - NAD-dependent histone deacetylase activity (H4-K16 specific) [Evidence IEA]; GO_function: GO:0045129 - NAD-independent histone deacetylase activity [Evidence IDA] [PMID 11711434]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IEA]; GO_function: GO:0031078 - histone deacetylase activity (H3-K14 specific) [Evidence IEA]; GO_function: GO:0032129 - histone deacetylase activity (H3-K9 specific) [Evidence IEA]; GO_function: GO:0034739 - histone deacetylase activity (H4-K16 specific) [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006325 - chromatin organization [Evidence ISS] [PMID 8962081]; GO_process: GO:0070932 - histone H3 deacetylation [Evidence IEA]; GO_process: GO:0070933 - histone H4 deacetylation [Evidence IEA]; GO_process: GO:0016575 - histone deacetylation [Evidence IEA]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 11711434]; GO_process: GO:0032874 - positive regulation of stress-activated MAPK cascade [Evidence IMP] [PMID 18487345]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 19379692]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence ISS] [PMID 8962081]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; histone deacetylase HOS2 complement(5051057..5052247) Sugiyamaella lignohabitans 30033478 AWJ20_1653 CDS SMC3 NC_031672.1 5053503 5056841 D Subunit of the multiprotein cohesin complex; required for sister chromatid cohesion in mitotic cells; also required, with Rec8p, for cohesion and recombination during meiosis; phylogenetically conserved SMC chromosomal ATPase family member; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA,IEA]; GO_component: GO:0034990 - nuclear mitotic cohesin complex [Evidence IDA] [PMID 9990856]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence TAS] [PMID 9887095]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 10412984]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IEA]; GO_process: GO:0051177 - meiotic sister chromatid cohesion [Evidence IMP] [PMID 10412984]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI] [PMID 9335333]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 10412984]; GO_process: GO:0007130 - synaptonemal complex assembly [Evidence IMP] [PMID 10412984]; cohesin subunit SMC3 5053503..5056841 Sugiyamaella lignohabitans 30033479 AWJ20_1654 CDS FMS1 NC_031672.1 5057098 5058801 R Polyamine oxidase; converts spermine to spermidine, which is required for the essential hypusination modification of translation factor eIF-5A; also involved in pantothenic acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0052904 - N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [Evidence IEA]; GO_function: GO:0052903 - N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0046592 - polyamine oxidase activity [Evidence IMP] [PMID 11154694]; GO_function: GO:0046592 - polyamine oxidase activity [Evidence IDA] [PMID 21067138]; GO_function: GO:0052902 - spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity [Evidence IEA]; GO_function: GO:0052901 - spermine:oxygen oxidoreductase (spermidine-forming) activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006598 - polyamine catabolic process [Evidence IGI,IMP] [PMID 12586697]; polyamine oxidase complement(5057098..5058801) Sugiyamaella lignohabitans 30033480 AWJ20_1655 CDS HOL1 NC_031672.1 5062045 5063772 D Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p 5062045..5063772 Sugiyamaella lignohabitans 30033481 AWJ20_1657 CDS AGC1 NC_031672.1 5066091 5068121 D Mitochondrial amino acid transporter; acts both as a glutamate uniporter and as an aspartate-glutamate exchanger; involved in nitrogen metabolism and nitrogen compound biosynthesis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015183 - L-aspartate transmembrane transporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0005313 - L-glutamate transmembrane transporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0015297 - antiporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0015292 - uniporter activity [Evidence IDA] [PMID 14622413]; GO_process: GO:0015813 - L-glutamate transport [Evidence IDA] [PMID 14622413]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015810 - aspartate transport [Evidence IDA] [PMID 14622413]; GO_process: GO:0044271 - cellular nitrogen compound biosynthetic process [Evidence IMP] [PMID 14622413]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Agc1p 5066091..5068121 Sugiyamaella lignohabitans 30033483 AWJ20_1658 CDS UBP15 NC_031672.1 5069882 5073496 D Ubiquitin-specific protease involved in protein deubiquitination; catalytic activity regulated by an N-terminal TRAF-like domain and and C-terminal sequences; physically interacts with anaphase-promoting complex/cyclosome (APC/C) activator, Cdh1p; forms a complex with AAA peroxins Pex1p and Pex6p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 21665945]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 10527495]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA,IMP] [PMID 21665945]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 21710968]; GO_process: GO:0016579 - protein deubiquitination [Evidence ISA] [PMID 19734957]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA,IMP] [PMID 21665945]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp15p 5069882..5073496 Sugiyamaella lignohabitans 30033484 AWJ20_1659 CDS ECM25 NC_031672.1 5074088 5075872 D Non-essential hypothetical protein; promoter contains a consensus binding sequence for factor Abf1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Ecm25p 5074088..5075872 Sugiyamaella lignohabitans 30033485 AWJ20_1660 CDS MET6 NC_031672.1 5077127 5079430 D 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase 5077127..5079430 Sugiyamaella lignohabitans 30033487 AWJ20_1661 CDS MED6 NC_031672.1 5079894 5080736 R Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; protein abundance increases in response to DNA replication stress; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001128 - RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly [Evidence IDA] [PMID 9234719]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA] [PMID 9234719]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 9234719]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Med6p complement(5079894..5080736) Sugiyamaella lignohabitans 30033488 AWJ20_1662 CDS AWJ20_1662 NC_031672.1 5080923 5084066 D uncharacterized protein 5080923..5084066 Sugiyamaella lignohabitans 30033489 AWJ20_1663 CDS FYV4 NC_031672.1 5086228 5086689 D hypothetical protein; required for survival upon exposure to K1 killer toxin; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fyv4p 5086228..5086689 Sugiyamaella lignohabitans 30033490 AWJ20_1664 CDS HNT2 NC_031672.1 5086940 5087470 R Dinucleoside triphosphate hydrolase; has similarity to the tumor suppressor FHIT and belongs to the histidine triad (HIT) superfamily of nucleotide-binding proteins; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0047710 - bis(5'-adenosyl)-triphosphatase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IDA] [PMID 12028594]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IDA] [PMID 1653209]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0009164 - nucleoside catabolic process [Evidence IMP] [PMID 9573184]; Hnt2p complement(5086940..5087470) Sugiyamaella lignohabitans 30033491 AWJ20_1665 CDS DAG7 NC_031672.1 5088185 5088586 D Expansin-A1 .2 5088185..5088586 Sugiyamaella lignohabitans 30033492 AWJ20_1666 CDS CMK1 NC_031672.1 5091479 5092849 D calmodulin-dependent protein kinase CMK1 5091479..5092849 Sugiyamaella lignohabitans 30033493 AWJ20_1667 CDS grt1 NC_031672.1 5096469 5098694 D transcription factor Grt1 (predicted) 5096469..5098694 Sugiyamaella lignohabitans 30033494 AWJ20_1668 CDS AWJ20_1668 NC_031672.1 5098970 5100112 R uncharacterized protein complement(5098970..5100112) Sugiyamaella lignohabitans 30033495 AWJ20_1671 CDS ERG1 NC_031672.1 5102654 5103166 D Squalene epoxidase; catalyzes the epoxidation of squalene to 2,3-oxidosqualene; plays an essential role in the ergosterol-biosynthesis pathway and is the specific target of the antifungal drug terbinafine; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9450962]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 9450962]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_function: GO:0008144 - drug binding [Evidence IMP] [PMID 14638499]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004506 - squalene monooxygenase activity [Evidence IEA,IEA]; GO_function: GO:0004506 - squalene monooxygenase activity [Evidence IMP] [PMID 200835]; GO_function: GO:0004506 - squalene monooxygenase activity [Evidence IDA] [PMID 9450962]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; squalene monooxygenase 5102654..5103166 Sugiyamaella lignohabitans 30033499 AWJ20_1672 CDS ERG1 NC_031672.1 5103538 5104200 D Squalene epoxidase; catalyzes the epoxidation of squalene to 2,3-oxidosqualene; plays an essential role in the ergosterol-biosynthesis pathway and is the specific target of the antifungal drug terbinafine; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9450962]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 9450962]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_function: GO:0008144 - drug binding [Evidence IMP] [PMID 14638499]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004506 - squalene monooxygenase activity [Evidence IEA,IEA]; GO_function: GO:0004506 - squalene monooxygenase activity [Evidence IMP] [PMID 200835]; GO_function: GO:0004506 - squalene monooxygenase activity [Evidence IDA] [PMID 9450962]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; squalene monooxygenase 5103538..5104200 Sugiyamaella lignohabitans 30033500 AWJ20_1673 CDS DAL7 NC_031672.1 5105520 5107163 R Malate synthase; can accept butyryl-CoA as acyl-CoA donor in addition to traditional substrate acetyl-CoA; recycles glyoxylate generated during allantoin degradation; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0009514 - glyoxysome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004474 - malate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004474 - malate synthase activity [Evidence IMP] [PMID 23642236]; GO_function: GO:0004474 - malate synthase activity [Evidence IDA] [PMID 8462696]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000256 - allantoin catabolic process [Evidence IDA] [PMID 8462696]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; malate synthase DAL7 complement(5105520..5107163) Sugiyamaella lignohabitans 30033501 AWJ20_1674 CDS APS3 NC_031672.1 5109002 5109394 D Small subunit of the clathrin-associated adaptor complex AP-3; involved in vacuolar protein sorting; related to the sigma subunit of the mammalian clathrin AP-3 complex; suppressor of loss of casein kinase 1 function; protein abundance increases in response to DNA replication stress; GO_component: GO:0030123 - AP-3 adaptor complex [Evidence IEA]; GO_component: GO:0030123 - AP-3 adaptor complex [Evidence IMP] [PMID 9250663]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 9335339]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 17895371]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Aps3p 5109002..5109394 Sugiyamaella lignohabitans 30033502 AWJ20_1675 CDS AWJ20_1675 NC_031672.1 5110420 5112237 D uncharacterized protein 5110420..5112237 Sugiyamaella lignohabitans 30033503 AWJ20_1676 CDS CDC42 NC_031672.1 5115390 5115965 D Small rho-like GTPase; essential for establishment and maintenance of cell polarity; plays a role late in cell fusion via activation of key cell fusion regulator Fus2p; mutants have defects in the organization of actin and septins; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12455994]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12455994]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8167411]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12455994]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 12455994]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 8167411]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 8167411]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IDA] [PMID 12455994]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12455994]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8167411]; GO_component: GO:0005940 - septin ring [Evidence IDA] [PMID 23906065]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11591390]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IMP] [PMID 10066831]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence IMP] [PMID 10066831]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 22323294]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 23468594]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 10066831]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IGI,IMP] [PMID 11003652]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IMP] [PMID 11595741]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IGI,IPI] [PMID 19955214]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 10066831]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence IMP] [PMID 12234925]; GO_process: GO:0060178 - regulation of exocyst localization [Evidence IMP] [PMID 11595741]; GO_process: GO:0031384 - regulation of initiation of mating projection growth [Evidence IMP] [PMID 14734532]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 11598008]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0031106 - septin ring organization [Evidence IMP] [PMID 14517318]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Rho family GTPase CDC42 5115390..5115965 Sugiyamaella lignohabitans 30033504 AWJ20_1677 CDS TCP1 NC_031672.1 5117289 5118809 D Alpha subunit of chaperonin-containing T-complex; complex mediates protein folding in the cytosol; involved in actin cytoskeleton maintenance; overexpression in neurons suppresses formation of pathogenic conformations of huntingtin protein; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; chaperonin-containing T-complex alpha subunit TCP1 5117289..5118809 Sugiyamaella lignohabitans 30033505 AWJ20_1678 CDS UPC2 NC_031672.1 5119592 5121778 D Sterol regulatory element binding protein; induces transcription of sterol biosynthetic genes and of DAN/TIR gene products; relocates from intracellular membranes to perinuclear foci on sterol depletion; UPC2 has a paralog, ECM22, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 18675371]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 11533229]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 18675371]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 11533229]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 11533229]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 16055745]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0071456 - cellular response to hypoxia [Evidence IMP] [PMID 19807692]; GO_process: GO:0035961 - positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11533229]; GO_process: GO:0035961 - positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16055745]; GO_process: GO:0035969 - positive regulation of sterol import by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12077145]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11238402]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Upc2p 5119592..5121778 Sugiyamaella lignohabitans 30033506 AWJ20_1679 CDS MBF1 NC_031672.1 5122084 5122545 R Transcriptional coactivator; bridges the DNA-binding region of Gcn4p and TATA-binding protein Spt15p; suppressor of frameshift mutations; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9710580]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IDA] [PMID 9710580]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9710580]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Mbf1p complement(5122084..5122545) Sugiyamaella lignohabitans 30033507 AWJ20_1680 CDS AWJ20_1680 NC_031672.1 5123001 5125082 D Uncharacterized protein C14F5.02 5123001..5125082 Sugiyamaella lignohabitans 30033509 AWJ20_1681 CDS STL1 NC_031672.1 5127839 5129446 R glucose-inactivated glycerol proton symporter STL1 complement(5127839..5129446) Sugiyamaella lignohabitans 30033510 AWJ20_1682 CDS GYP1 NC_031672.1 5131245 5132420 R Cis-golgi GTPase-activating protein (GAP) for yeast Rabs; the Rab family members are Ypt1p (in vivo) and for Ypt1p, Sec4p, Ypt7p, and Ypt51p (in vitro); involved in vesicle docking and fusion; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11359917]; GO_component: GO:0005795 - Golgi stack [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IDA,IMP,IPI,ISS] [PMID 10508155]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IDA] [PMID 11118206]; Gyp1p complement(5131245..5132420) Sugiyamaella lignohabitans 30033511 AWJ20_1683 CDS MTD1 NC_031672.1 5134267 5135208 D NAD-dependent 5,10-methylenetetrahydrafolate dehydrogenase; plays a catalytic role in oxidation of cytoplasmic one-carbon units; expression is regulated by Bas1p and Bas2p, repressed by adenine, and may be induced by inositol and choline; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8608153]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004487 - methylenetetrahydrofolate dehydrogenase (NAD+) activity [Evidence IEA]; GO_function: GO:0004487 - methylenetetrahydrofolate dehydrogenase (NAD+) activity [Evidence IMP,ISS] [PMID 8416923]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IMP] [PMID 8608153]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IDA,IMP] [PMID 8608153]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009113 - purine nucleobase biosynthetic process [Evidence IDA,IMP] [PMID 8608153]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; methylenetetrahydrofolate dehydrogenase (NAD(+)) 5134267..5135208 Sugiyamaella lignohabitans 30033512 AWJ20_1684 CDS RPF2 NC_031672.1 5135422 5136273 R Essential protein involved in rRNA maturation and ribosomal assembly; involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit; interacts with ribosomal protein L11; localizes predominantly to the nucleolus; constituent of 66S pre-ribosomal particles; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11864606]; GO_component: GO:0005730 - nucleolus [Evidence IPI] [PMID 11864607]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0008097 - 5S rRNA binding [Evidence IPI] [PMID 11864606]; GO_function: GO:0008312 - 7S RNA binding [Evidence IPI] [PMID 11864606]; GO_function: GO:0019843 - rRNA binding [Evidence IPI] [PMID 11864606]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11864606]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11864606]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 11864606]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 11864607]; Rpf2p complement(5135422..5136273) Sugiyamaella lignohabitans 30033513 AWJ20_1685 CDS NUP133 NC_031672.1 5136917 5139202 D Subunit of Nup84p subcomplex of nuclear pore complex (NPC); contributes to nucleocytoplasmic transport, NPC biogenesis; is involved in establishment of a normal nucleocytoplasmic concentration gradient of GTPase Gsp1p; also plays roles in several processes that may require localization of genes or chromosomes at nuclear periphery, including double-strand break repair, transcription and chromatin silencing; relocalizes to cytosol in response to hypoxia; homolog of human NUP133; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 22331846]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 21818277]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI] [PMID 15725626]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 16418532]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 17538013]; GO_process: GO:0031990 - mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 18258809]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0035392 - maintenance of chromatin silencing at telomere [Evidence IMP] [PMID 16418532]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22110603]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 22331846]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 7813444]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 7862658]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9725905]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 21036941]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 7813444]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22110603]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA,IGI] [PMID 15817685]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12730220]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IMP] [PMID 8524308]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IMP] [PMID 16418532]; GO_process: GO:0006810 - transport [Evidence IEA]; Nup133p 5136917..5139202 Sugiyamaella lignohabitans 30033514 AWJ20_1686 CDS NUP133 NC_031672.1 5139874 5140953 D Subunit of Nup84p subcomplex of nuclear pore complex (NPC); contributes to nucleocytoplasmic transport, NPC biogenesis; is involved in establishment of a normal nucleocytoplasmic concentration gradient of GTPase Gsp1p; also plays roles in several processes that may require localization of genes or chromosomes at nuclear periphery, including double-strand break repair, transcription and chromatin silencing; relocalizes to cytosol in response to hypoxia; homolog of human NUP133; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 22331846]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 21818277]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI] [PMID 15725626]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 16418532]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 17538013]; GO_process: GO:0031990 - mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 18258809]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0035392 - maintenance of chromatin silencing at telomere [Evidence IMP] [PMID 16418532]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22110603]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 22331846]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 7813444]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 7862658]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9725905]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 21036941]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 7813444]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22110603]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA,IGI] [PMID 15817685]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12730220]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IMP] [PMID 8524308]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IMP] [PMID 16418532]; GO_process: GO:0006810 - transport [Evidence IEA]; Nup133p 5139874..5140953 Sugiyamaella lignohabitans 30033515 AWJ20_1687 CDS DAD2 NC_031672.1 5141094 5141393 R Essential subunit of the Dam1 complex (aka DASH complex); complex couples kinetochores to the force produced by MT depolymerization thereby aiding in chromosome segregation; is transferred to the kinetochore prior to mitosis; GO_component: GO:0042729 - DASH complex [Evidence IEA]; GO_component: GO:0042729 - DASH complex [Evidence IDA] [PMID 15640796]; GO_component: GO:0042729 - DASH complex [Evidence IDA] [PMID 15664196]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0072686 - mitotic spindle [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 15664196]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 16777964]; GO_function: GO:0051010 - microtubule plus-end binding [Evidence IDA] [PMID 17620411]; GO_function: GO:0051010 - microtubule plus-end binding [Evidence IDA] [PMID 20479465]; GO_process: GO:0008608 - attachment of spindle microtubules to kinetochore [Evidence IDA] [PMID 17620411]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA,IEA]; GO_process: GO:0051987 - positive regulation of attachment of spindle microtubules to kinetochore [Evidence IDA] [PMID 20479465]; GO_process: GO:0051987 - positive regulation of attachment of spindle microtubules to kinetochore [Evidence IDA] [PMID 20479468]; GO_process: GO:0031116 - positive regulation of microtubule polymerization [Evidence IDA] [PMID 15664196]; Dad2p complement(5141094..5141393) Sugiyamaella lignohabitans 30033516 AWJ20_1688 CDS SEC6 NC_031672.1 5143166 5145433 R Essential 88kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane prior to SNARE-mediated fusion; anchors the assembled complex to sites of secretion; interacts with SM-like protein and SNARE regulator Sec1p and may recruit it to sites of secretion; interacts with Sec9p and inhibits formation of the t-SNARE complex between Sec9p and Sso1p; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 19073882]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 19073882]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000145 - exocyst [Evidence IEA]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 7615633]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0000149 - SNARE binding [Evidence IDA,IPI] [PMID 15835919]; GO_function: GO:0000149 - SNARE binding [Evidence IDA,IPI] [PMID 22114349]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA] [PMID 15835919]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 7026045]; GO_process: GO:0051601 - exocyst localization [Evidence IMP] [PMID 19073882]; GO_process: GO:0006887 - exocytosis [Evidence IEA,IEA]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 6996832]; GO_process: GO:0035544 - negative regulation of SNARE complex assembly [Evidence IDA,IPI] [PMID 15835919]; GO_process: GO:0035544 - negative regulation of SNARE complex assembly [Evidence IDA,IGI,IPI] [PMID 22114349]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Sec6p complement(5143166..5145433) Sugiyamaella lignohabitans 30033517 AWJ20_1689 CDS AWJ20_1689 NC_031672.1 5145926 5146735 R EEH16864|polysaccharide deacetylase family protein [Paracoccidioides brasiliensis Pb03]; polysaccharide deacetylase family protein complement(5145926..5146735) Sugiyamaella lignohabitans 30033518 AWJ20_1690 CDS CTK1 NC_031672.1 5147190 5148353 R cyclin-dependent serine/threonine protein kinase CTK1 complement(5147190..5148353) Sugiyamaella lignohabitans 30033520 AWJ20_1691 CDS MRS2 NC_031672.1 5148992 5150488 D Mitochondrial inner membrane Mg(2+) channel; required for maintenance of intramitochondrial Mg(2+) concentrations at the correct level to support splicing of group II introns; similar to bacterial CorA; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10400670]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IGI,IMP,ISS] [PMID 10400670]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IDA] [PMID 12628916]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015693 - magnesium ion transport [Evidence IEA]; GO_process: GO:0045016 - mitochondrial magnesium ion transport [Evidence IGI,IMP,ISS] [PMID 10400670]; GO_process: GO:0045016 - mitochondrial magnesium ion transport [Evidence IDA] [PMID 12628916]; GO_process: GO:0006810 - transport [Evidence IEA]; Mrs2p 5148992..5150488 Sugiyamaella lignohabitans 30033521 AWJ20_1692 CDS SGV1 NC_031672.1 5150824 5152638 R cyclin-dependent serine/threonine protein kinase SGV1 complement(5150824..5152638) Sugiyamaella lignohabitans 30033522 AWJ20_1693 CDS ETR1 NC_031672.1 5153164 5154318 D 2-enoyl thioester reductase; member of the medium chain dehydrogenase/reductase family; localized to in mitochondria, where it has a probable role in fatty acid synthesis; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11509667]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0004319 - enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity [Evidence IEA]; GO_function: GO:0016631 - enoyl-[acyl-carrier-protein] reductase activity [Evidence IDA] [PMID 11509667]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0019166 - trans-2-enoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 11509667]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IMP] [PMID 11509667]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Etr1p 5153164..5154318 Sugiyamaella lignohabitans 30033523 AWJ20_1694 CDS GAT2 NC_031672.1 5165829 5168105 D Protein containing GATA family zinc finger motifs; similar to Gln3p and Dal80p; expression repressed by leucine; GO_component: GO:0005634 - nucleus [Evidence ISA] [PMID 10392447]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence ISA] [PMID 10392447]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence ISA] [PMID 10392447]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; Gat2p 5165829..5168105 Sugiyamaella lignohabitans 30033524 AWJ20_1695 CDS UBC11 NC_031672.1 5172875 5173285 D Ubiquitin-conjugating enzyme; most similar in sequence to Xenopus ubiquitin-conjugating enzyme E2-C, but not a true functional homolog of this E2; unlike E2-C, not required for the degradation of mitotic cyclin Clb2; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 8982460]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence ISS] [PMID 9675819]; GO_process: GO:0006513 - protein monoubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0000209 - protein polyubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; putative E2 ubiquitin-protein ligase UBC11 5172875..5173285 Sugiyamaella lignohabitans 30033525 AWJ20_1696 CDS AWJ20_1696 NC_031672.1 5173722 5174495 R uncharacterized protein complement(5173722..5174495) Sugiyamaella lignohabitans 30033526 AWJ20_1697 CDS AWJ20_1697 NC_031672.1 5175197 5176432 R uncharacterized protein complement(5175197..5176432) Sugiyamaella lignohabitans 30033527 AWJ20_1698 CDS GIS2 NC_031672.1 5180023 5181035 R Translational activator for mRNAs with internal ribosome entry sites; associates with polysomes and binds to a specific subset of mRNAs; localizes to RNA processing bodies (P bodies) and to stress granules; may have a role in translation regulation under stress conditions; ortholog of human ZNF9/CNBP, a gene involved in myotonic dystrophy type 2; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23222640]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23285195]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23285195]; GO_component: GO:0042788 - polysomal ribosome [Evidence IPI] [PMID 21277287]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21232131]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 21232131]; GO_function: GO:0045182 - translation regulator activity [Evidence IDA] [PMID 21277287]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0045727 - positive regulation of translation [Evidence IDA] [PMID 21277287]; Gis2p complement(join(5180023..5180732,5180834..5181035)) Sugiyamaella lignohabitans 30033528 AWJ20_1700 CDS AWJ20_1700 NC_031672.1 5187358 5190330 D uncharacterized protein 5187358..5190330 Sugiyamaella lignohabitans 30033532 AWJ20_1701 CDS AWJ20_1701 NC_031672.1 5190965 5191336 R uncharacterized protein complement(5190965..5191336) Sugiyamaella lignohabitans 30033533 AWJ20_1702 CDS GCD6 NC_031672.1 5192353 5194398 D Catalytic epsilon subunit of the translation initiation factor eIF2B; eIF2B is the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IGI,IPI] [PMID 8336705]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IMP] [PMID 8441423]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IPI] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IPI] [PMID 8336705]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA,IPI] [PMID 9472020]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IMP] [PMID 10805739]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IMP] [PMID 12356745]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 9472020]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IGI,IPI] [PMID 8336705]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IPI] [PMID 8336705]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA] [PMID 8506384]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; Gcd6p 5192353..5194398 Sugiyamaella lignohabitans 30033534 AWJ20_1703 CDS AWJ20_1703 NC_031672.1 5195286 5199734 D uncharacterized protein 5195286..5199734 Sugiyamaella lignohabitans 30033535 AWJ20_1704 CDS SLN1 NC_031672.1 5200108 5203182 D Histidine kinase osmosensor that regulates a MAP kinase cascade; transmembrane protein with an intracellular kinase domain that signals to Ypd1p and Ssk1p, thereby forming a phosphorelay system similar to bacterial two-component regulators; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10198019]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 14665464]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8808622]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0009927 - histidine phosphotransfer kinase activity [Evidence IDA,IMP] [PMID 12455952]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005034 - osmosensor activity [Evidence IDA] [PMID 12821642]; GO_function: GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO_function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IDA] [PMID 8808622]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0006469 - negative regulation of protein kinase activity [Evidence IGI,IMP] [PMID 9482735]; GO_process: GO:0007234 - osmosensory signaling via phosphorelay pathway [Evidence IDA] [PMID 8808622]; GO_process: GO:0018106 - peptidyl-histidine phosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA,IEA]; GO_process: GO:0046777 - protein autophosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0023014 - signal transduction by phosphorylation [Evidence IEA]; Sln1p 5200108..5203182 Sugiyamaella lignohabitans 30033536 AWJ20_1705 CDS MSB1 NC_031672.1 5207787 5212853 D hypothetical protein; may be involved in positive regulation of 1,3-beta-glucan synthesis and the Pkc1p-MAPK pathway; multicopy suppressor of temperature-sensitive mutations in CDC24 and CDC42, and of mutations in BEM4; potential Cdc28p substrate; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence TAS] [PMID 10679030]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence TAS] [PMID 10679030]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IGI] [PMID 10679030]; Msb1p 5207787..5212853 Sugiyamaella lignohabitans 30033537 AWJ20_1706 CDS AWJ20_1706 NC_031672.1 5213394 5214956 R uncharacterized protein complement(5213394..5214956) Sugiyamaella lignohabitans 30033538 AWJ20_1707 CDS AWJ20_1707 NC_031672.1 5215681 5216580 R fork head domain protein, putative complement(5215681..5216580) Sugiyamaella lignohabitans 30033539 AWJ20_1708 CDS KTR4 NC_031672.1 5217620 5218642 D Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family of type II membrane proteins with a short cytoplasmic N-terminus, a membrane-spanning region and a highly conserved catalytic lumenal domain; GO_component: GO:0005794 - Golgi apparatus [Evidence ISS] [PMID 7975899]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 7975899]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence ISS] [PMID 7975899]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; Ktr4p 5217620..5218642 Sugiyamaella lignohabitans 30033540 AWJ20_1709 CDS KIC1 NC_031672.1 5218841 5220364 R putative serine/threonine protein kinase KIC1 complement(5218841..5220364) Sugiyamaella lignohabitans 30033541 AWJ20_1710 CDS KIP1 NC_031672.1 5221579 5224824 D Kinesin-related motor protein; required for mitotic spindle assembly, chromosome segregation, and 2 micron plasmid partitioning; functionally redundant with Cin8p for chromosomal but not plasmid functions; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 1618910]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IGI] [PMID 1618910]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007019 - microtubule depolymerization [Evidence IMP] [PMID 19041752]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IMP] [PMID 9813090]; GO_process: GO:0030541 - plasmid partitioning [Evidence IMP] [PMID 19364922]; GO_process: GO:0090307 - spindle assembly involved in mitosis [Evidence IMP] [PMID 9813090]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 1618897]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 1618910]; Kip1p 5221579..5224824 Sugiyamaella lignohabitans 30033543 AWJ20_1711 CDS AWJ20_1711 NC_031672.1 5225023 5225610 R uncharacterized protein complement(5225023..5225610) Sugiyamaella lignohabitans 30033544 AWJ20_1712 CDS AWJ20_1712 NC_031672.1 5226253 5227161 R Protein midA-like protein complement(5226253..5227161) Sugiyamaella lignohabitans 30033545 AWJ20_1713 CDS MIS1 NC_031672.1 5229871 5232810 D Mitochondrial C1-tetrahydrofolate synthase; involved in interconversion between different oxidation states of tetrahydrofolate (THF); provides activities of formyl-THF synthetase, methenyl-THF cyclohydrolase, and methylene-THF dehydrogenase; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 3528153]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA,IEA]; GO_function: GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004477 - methenyltetrahydrofolate cyclohydrolase activity [Evidence IEA]; GO_function: GO:0004477 - methenyltetrahydrofolate cyclohydrolase activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IDA] [PMID 3528153]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IDA] [PMID 3528153]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IMP] [PMID 10781559]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; trifunctional formate-tetrahydrofolate ligase 5229871..5232810 Sugiyamaella lignohabitans 30033546 AWJ20_1714 CDS HEM14 NC_031672.1 5233144 5235366 D Protoporphyrinogen oxidase; a mitochondrial enzyme that catalyzes the seventh step in the heme biosynthetic pathway, converting protoporphyrinogen IX to protoporphyrin IX; inhibited by diphenyl ether-type herbicides; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 7798202]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity [Evidence IEA,IEA]; GO_function: GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity [Evidence IMP] [PMID 7052077]; GO_function: GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity [Evidence IDA] [PMID 7798202]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 7035824]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; oxygen-dependent protoporphyrinogen oxidase 5233144..5235366 Sugiyamaella lignohabitans 30033547 AWJ20_1715 CDS GOS1 NC_031672.1 5235508 5236176 R v-SNARE protein involved in Golgi transport; homolog of the mammalian protein GOS-28/GS28; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 16699523]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA,IEA]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 11959998]; GO_component: GO:0005801 - cis-Golgi network [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS,NAS] [PMID 9755865]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 11959998]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0048193 - Golgi vesicle transport [Evidence IMP] [PMID 9755865]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11959998]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Gos1p complement(5235508..5236176) Sugiyamaella lignohabitans 30033548 AWJ20_1716 CDS CLD1 NC_031672.1 5237188 5238675 D Mitochondrial cardiolipin-specific phospholipase; functions upstream of Taz1p to generate monolyso-cardiolipin; transcription increases upon genotoxic stress; involved in restricting Ty1 transposition; has homology to mammalian CGI-58; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 23637464]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19244244]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004623 - phospholipase A2 activity [Evidence IDA,IMP] [PMID 19244244]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0035965 - cardiolipin acyl-chain remodeling [Evidence IMP] [PMID 19244244]; GO_process: GO:0035965 - cardiolipin acyl-chain remodeling [Evidence IMP] [PMID 23637464]; GO_process: GO:0032048 - cardiolipin metabolic process [Evidence IDA,IGI] [PMID 19244244]; Cld1p 5237188..5238675 Sugiyamaella lignohabitans 30033549 AWJ20_1717 CDS FAA4 NC_031672.1 5238817 5240877 R Long chain fatty acyl-CoA synthetase; activates imported fatty acids with a preference for C12:0-C16:0 chain lengths; functions in long chain fatty acid import; important for survival during stationary phase; localized to lipid particles; involved in sphingolipid-to-glycerolipid metabolism; forms cytoplasmic foci upon DNA replication stress; FAA4 has a paralog, FAA1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IEA]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IGI,IMP] [PMID 11477098]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IGI] [PMID 22633490]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IDA] [PMID 7650027]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0001676 - long-chain fatty acid metabolic process [Evidence IEA]; GO_process: GO:0015909 - long-chain fatty acid transport [Evidence IGI] [PMID 12601005]; GO_process: GO:0035336 - long-chain fatty-acyl-CoA metabolic process [Evidence IGI,IMP] [PMID 11477098]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; long-chain fatty acid-CoA ligase FAA4 complement(5238817..5240877) Sugiyamaella lignohabitans 30033550 AWJ20_1718 CDS NUP145 NC_031672.1 5243287 5248053 D Essential protein with distinct roles in two nuclear pore subcomplexes; catalyzes its own proteolytic cleavage in vivo to generate a C-terminal fragment that is a structural component of the Nup84p subcomplex (with roles in NPC biogenesis and localization of genes to the nuclear periphery), and an N-terminal fragment that is one of several FG-nucleoporins within the NPC central core directly responsible for nucleocytoplasmic transport; homologous to human NUP98; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0044613 - nuclear pore central transport channel [Evidence IDA] [PMID 18046406]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 9305650]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 8044840]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0005487 - nucleocytoplasmic transporter activity [Evidence IPI] [PMID 17418788]; GO_function: GO:0005487 - nucleocytoplasmic transporter activity [Evidence IGI] [PMID 20647373]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IPI] [PMID 17418788]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 22331846]; GO_process: GO:0006607 - NLS-bearing protein import into nucleus [Evidence IGI] [PMID 15039779]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 16418532]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0035392 - maintenance of chromatin silencing at telomere [Evidence IMP] [PMID 16418532]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 8195299]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9001245]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9133678]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9305650]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 8044840]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 9001245]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 9133678]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 9305650]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA] [PMID 15817685]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006606 - protein import into nucleus [Evidence IGI] [PMID 20647373]; GO_process: GO:0036228 - protein targeting to nuclear inner membrane [Evidence IGI] [PMID 21659568]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IMP] [PMID 8524308]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IMP] [PMID 10638763]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IMP] [PMID 11862215]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IMP] [PMID 16418532]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Nup145p 5243287..5248053 Sugiyamaella lignohabitans 30033551 AWJ20_1719 CDS AWJ20_1719 NC_031672.1 5248421 5250115 D uncharacterized protein 5248421..5250115 Sugiyamaella lignohabitans 30033552 AWJ20_1720 CDS NBP35 NC_031672.1 5250276 5251250 R Essential cytoplasmic iron-sulfur cluster binding protein; forms a complex with Cfd1p that is involved in iron-sulfur protein assembly in the cytosol; similar to P-loop NTPases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15728363]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15728363]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15728363]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8921898]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA,IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IDA] [PMID 17401378]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IMP,ISS] [PMID 8921898]; GO_function: GO:0005506 - iron ion binding [Evidence IMP,IPI] [PMID 15728363]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA,IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 15728363]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IDA] [PMID 17401378]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Nbp35p complement(5250276..5251250) Sugiyamaella lignohabitans 30033554 AWJ20_1721 CDS ISW2 NC_031672.1 5253278 5255989 D ATP-dependent DNA translocase involved in chromatin remodeling; ATPase component that, with Itc1p, forms a complex required for repression of a-specific genes, INO1, and early meiotic genes during mitotic growth; the Isw2 complex exhibits basal levels of chromatin binding throughout the genome as well as target-specific chromatin interactions; targeted by Ume6p- and Sua7p-dependent DNA looping to many loci genome-wide; GO_component: GO:0008623 - CHRAC [Evidence IPI,ISS] [PMID 14673157]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11238381]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 19203228]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16227570]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0031491 - nucleosome binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 19203228]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 11238381]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA,IMP] [PMID 16227570]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 17689493]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 14673157]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 17689493]; GO_process: GO:0060195 - negative regulation of antisense RNA transcription [Evidence IGI] [PMID 18075583]; GO_process: GO:0046020 - negative regulation of transcription from RNA polymerase II promoter by pheromones [Evidence IMP] [PMID 12624196]; GO_process: GO:0016584 - nucleosome positioning [Evidence IDA] [PMID 15116071]; GO_process: GO:0016584 - nucleosome positioning [Evidence IDA] [PMID 17949749]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 16227570]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IGI] [PMID 12504018]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Isw2p 5253278..5255989 Sugiyamaella lignohabitans 30033555 AWJ20_1722 CDS GPX2 NC_031672.1 5256161 5256670 R Phospholipid hydroperoxide glutathione peroxidase; protects cells from phospholipid hydroperoxides and nonphospholipid peroxides during oxidative stress; induced by glucose starvation; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21763276]; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 21763276]; GO_component: GO:0031315 - extrinsic component of mitochondrial outer membrane [Evidence IDA] [PMID 21763276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IEA,IEA]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IMP,ISS] [PMID 10480913]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IDA] [PMID 11445588]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IDA] [PMID 11875065]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0047066 - phospholipid-hydroperoxide glutathione peroxidase activity [Evidence IDA,IMP] [PMID 11445588]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11445588]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006979 - response to oxidative stress [Evidence IEA]; glutathione peroxidase GPX2 complement(5256161..5256670) Sugiyamaella lignohabitans 30033556 AWJ20_1723 CDS TRL1 NC_031672.1 5260525 5261358 D tRNA ligase; required for tRNA splicing and for both splicing and translation of HAC1 mRNA in the UPR; has phosphodiesterase, polynucleotide kinase, and ligase activities; localized at the inner nuclear envelope and partially to polysomes; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 3312232]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 20844078]; GO_function: GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IDA] [PMID 6297798]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0051730 - GTP-dependent polyribonucleotide 5'-hydroxyl-kinase activity [Evidence IDA] [PMID 8428918]; GO_function: GO:0003972 - RNA ligase (ATP) activity [Evidence IEA,IEA]; GO_function: GO:0003972 - RNA ligase (ATP) activity [Evidence IDA] [PMID 3277966]; GO_function: GO:0003972 - RNA ligase (ATP) activity [Evidence IDA] [PMID 3512545]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0030969 - UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 8898194]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0032056 - positive regulation of translation in response to stress [Evidence IMP,IPI] [PMID 20844078]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IMP] [PMID 1537841]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IDA] [PMID 2207062]; tRNA ligase 5260525..5261358 Sugiyamaella lignohabitans 30033557 AWJ20_1724 CDS ERG8 NC_031672.1 5261469 5262860 R Phosphomevalonate kinase; an essential cytosolic enzyme that acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004631 - phosphomevalonate kinase activity [Evidence IEA]; GO_function: GO:0004631 - phosphomevalonate kinase activity [Evidence IMP] [PMID 1846667]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0010142 - farnesyl diphosphate biosynthetic process, mevalonate pathway [Evidence IMP] [PMID 200835]; GO_process: GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]; GO_process: GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IMP] [PMID 200835]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0031388 - organic acid phosphorylation [Evidence IMP] [PMID 200835]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; phosphomevalonate kinase complement(5261469..5262860) Sugiyamaella lignohabitans 30033558 AWJ20_1725 CDS CYT2 NC_031672.1 5263082 5263864 D Cytochrome c1 heme lyase; involved in maturation of cytochrome c1, which is a subunit of the mitochondrial ubiquinol-cytochrome-c reductase; links heme covalently to apocytochrome c1; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 7559417]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004408 - holocytochrome-c synthase activity [Evidence IEA]; GO_function: GO:0004408 - holocytochrome-c synthase activity [Evidence IMP,ISS] [PMID 1499554]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0018063 - cytochrome c-heme linkage [Evidence IMP,ISS] [PMID 1499554]; cytochrome c1 heme lyase CYT2 5263082..5263864 Sugiyamaella lignohabitans 30033559 AWJ20_1726 CDS TIM10 NC_031672.1 5264280 5264531 R Essential protein of the mitochondrial intermembrane space; forms a complex with Tim9p (TIM10 complex) that delivers hydrophobic proteins to the TIM22 complex for insertion into the inner membrane; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0042719 - mitochondrial intermembrane space protein transporter complex [Evidence IDA] [PMID 9822593]; GO_component: GO:0042719 - mitochondrial intermembrane space protein transporter complex [Evidence IDA] [PMID 9889188]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP] [PMID 9430585]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 9495346]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 12138093]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IEA]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IMP] [PMID 9430585]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IDA] [PMID 9495346]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; protein transporter TIM10 complement(5264280..5264531) Sugiyamaella lignohabitans 30033560 AWJ20_1727 CDS CDC33 NC_031672.1 5267116 5267847 D mRNA cap binding protein and translation initiation factor eIF4E; the eIF4E-cap complex is responsible for mediating cap-dependent mRNA translation via interactions with translation initiation factor eIF4G (Tif4631p or Tif4632p); protein abundance increases in response to DNA replication stress; mutants are defective for adhesion and pseudohyphal growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8119957]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0016281 - eukaryotic translation initiation factor 4F complex [Evidence TAS] [PMID 9841679]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8119957]; GO_component: GO:0005840 - ribosome [Evidence TAS] [PMID 9841679]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence ISS] [PMID 3062383]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IDA,IPI] [PMID 15753296]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 2540596]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence ISS] [PMID 3062383]; translation initiation factor eIF4E 5267116..5267847 Sugiyamaella lignohabitans 30033561 AWJ20_1728 CDS AWJ20_1728 NC_031672.1 5268144 5269580 R Myb-related protein A complement(5268144..5269580) Sugiyamaella lignohabitans 30033562 AWJ20_1729 CDS VNX1 NC_031672.1 5271967 5275515 D Calcium/H+ antiporter localized to the endoplasmic reticulum membrane; member of the calcium exchanger (CAX) family; potential Cdc28p substrate; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 20578725]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17588950]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20709757]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015369 - calcium:proton antiporter activity [Evidence IMP] [PMID 20578725]; GO_function: GO:0015386 - potassium:proton antiporter activity [Evidence IMP] [PMID 17588950]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IMP] [PMID 17588950]; GO_process: GO:0006818 - hydrogen transport [Evidence IMP] [PMID 20578725]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006813 - potassium ion transport [Evidence IMP] [PMID 17588950]; GO_process: GO:0006814 - sodium ion transport [Evidence IEA]; GO_process: GO:0006814 - sodium ion transport [Evidence IMP] [PMID 17588950]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vnx1p 5271967..5275515 Sugiyamaella lignohabitans 30033563 AWJ20_1730 CDS AWJ20_1730 NC_031672.1 5275963 5276874 D uncharacterized protein 5275963..5276874 Sugiyamaella lignohabitans 30033565 AWJ20_1731 CDS TSC13 NC_031672.1 5276979 5277965 R Enoyl reductase; catalyzes the last step in each cycle of very long chain fatty acid elongation; localizes to the ER, highly enriched in a structure marking nuclear-vacuolar junctions; coimmunoprecipitates with elongases Fen1p and Sur4p; protein increases in abundance and relative distribution to ER foci increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 22842922]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA,IGI,ISS] [PMID 11113186]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IMP,ISS] [PMID 11113186]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0000038 - very long-chain fatty acid metabolic process [Evidence IGI,IMP,IPI] [PMID 11113186]; trans-2-enoyl-CoA reductase (NADPH) TSC13 complement(5276979..5277965) Sugiyamaella lignohabitans 30033566 AWJ20_1732 CDS AWJ20_1732 NC_031672.1 5278548 5281133 D Protein kinase of unknown cellular role; binds phosphatidylinositols and cardiolipin in a large-scale study; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004672 - protein kinase activity [Evidence ISS] [PMID 9020587]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; non-specific serine/threonine protein kinase 5278548..5281133 Sugiyamaella lignohabitans 30033567 AWJ20_1733 CDS CDC60 NC_031672.1 5281255 5284404 R Cytosolic leucyl tRNA synthetase; ligates leucine to the appropriate tRNA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9742237]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004823 - leucine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004823 - leucine-tRNA ligase activity [Evidence IDA] [PMID 9742237]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006429 - leucyl-tRNA aminoacylation [Evidence IDA] [PMID 9742237]; GO_process: GO:0032006 - regulation of TOR signaling [Evidence IMP,IPI] [PMID 22424774]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; leucine--tRNA ligase CDC60 complement(5281255..5284404) Sugiyamaella lignohabitans 30033568 AWJ20_1734 CDS GCD1 NC_031672.1 5285025 5286323 R Gamma subunit of the translation initiation factor eIF2B; the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA,IPI] [PMID 9472020]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 8506384]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA,IPI] [PMID 9472020]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IMP] [PMID 11707417]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IMP,IPI] [PMID 2038327]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 1986242]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 2038327]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IMP] [PMID 3516411]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 3915540]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA] [PMID 8506384]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; Gcd1p complement(5285025..5286323) Sugiyamaella lignohabitans 30033569 AWJ20_1735 CDS RPT4 NC_031672.1 5286954 5287184 D ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in degradation of ubiquitinated substrates; contributes preferentially to ERAD; required for spindle pole body duplication; mainly nuclear localization; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10419517]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8955118]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0019904 - protein domain specific binding [Evidence IDA] [PMID 11418596]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18174173]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IGI] [PMID 11410533]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 19843524]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 11389845]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; proteasome regulatory particle base subunit RPT4 5286954..5287184 Sugiyamaella lignohabitans 30033570 AWJ20_1736 CDS RPT4 NC_031672.1 5287485 5288333 D ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in degradation of ubiquitinated substrates; contributes preferentially to ERAD; required for spindle pole body duplication; mainly nuclear localization; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10419517]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8955118]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0019904 - protein domain specific binding [Evidence IDA] [PMID 11418596]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18174173]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IGI] [PMID 11410533]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 19843524]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 11389845]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; proteasome regulatory particle base subunit RPT4 5287485..5288333 Sugiyamaella lignohabitans 30033571 AWJ20_1737 CDS AWJ20_1737 NC_031672.1 5288532 5290058 R N-acetyltransferase (predicted) complement(5288532..5290058) Sugiyamaella lignohabitans 30033572 AWJ20_1738 CDS AWJ20_1738 NC_031672.1 5291143 5292570 R N-acetyltransferase (predicted) complement(5291143..5292570) Sugiyamaella lignohabitans 30033573 AWJ20_1739 CDS HNT3 NC_031672.1 5293559 5294071 R DNA 5' AMP hydrolase involved in DNA repair; member of the histidine triad (HIT) superfamily of nucleotide-binding proteins; homolog of Aprataxin, a Hint related protein that is mutated in individuals with ataxia with oculomotor apraxia; relative distribution to nuclear foci decreases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0033699 - DNA 5'-adenosine monophosphate hydrolase activity [Evidence IDA] [PMID 16964241]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI,IMP] [PMID 20399152]; Hnt3p complement(5293559..5294071) Sugiyamaella lignohabitans 30033574 AWJ20_1740 CDS SEC61 NC_031672.1 5295229 5296539 D Conserved ER protein translocation channel; essential subunit of Sec61 complex (Sec61p, Sbh1p, and Sss1p); forms channel for SRP-dependent protein import; with Sec63 complex allows SRP-independent protein import into ER; involved in posttranslational soluble protein import into the ER, ERAD of soluble substrates, and misfolded soluble protein export from the ER; GO_component: GO:0005784 - Sec61 translocon complex [Evidence IDA] [PMID 8612571]; GO_component: GO:0005784 - Sec61 translocon complex [Evidence IDA] [PMID 9252322]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IMP] [PMID 1550957]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IDA] [PMID 9252322]; GO_function: GO:0015197 - peptide transporter activity [Evidence IMP] [PMID 10758167]; GO_function: GO:0005048 - signal sequence binding [Evidence IDA] [PMID 12134063]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 19696741]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 24314051]; GO_process: GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 11076036]; GO_process: GO:0044743 - intracellular protein transmembrane import [Evidence IMP] [PMID 24314051]; GO_process: GO:0070843 - misfolded protein transport [Evidence IMP] [PMID 24314051]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 7758110]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 9252322]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 9843581]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 10635318]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 9303298]; GO_process: GO:0006810 - transport [Evidence IEA]; translocon subunit SEC61 5295229..5296539 Sugiyamaella lignohabitans 30033576 AWJ20_1741 CDS AWJ20_1741 NC_031672.1 5298975 5299310 D uncharacterized protein 5298975..5299310 Sugiyamaella lignohabitans 30033577 AWJ20_1742 CDS YVH1 NC_031672.1 5305069 5306742 D tyrosine protein phosphatase YVH1 5305069..5306742 Sugiyamaella lignohabitans 30033578 AWJ20_1743 CDS APE2 NC_031672.1 5306963 5309650 R Aminopeptidase yscII; may have a role in obtaining leucine from dipeptide substrates; APE2 has a paralog, AAP1, that arose from the whole genome duplication; GO_component: GO:0030287 - cell wall-bounded periplasmic space [Evidence IDA] [PMID 383482]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 383482]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0042597 - periplasmic space [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IDA] [PMID 6352682]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0043171 - peptide catabolic process [Evidence IMP] [PMID 3286257]; GO_process: GO:0043171 - peptide catabolic process [Evidence IDA] [PMID 6352682]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Ape2p complement(5306963..5309650) Sugiyamaella lignohabitans 30033579 AWJ20_1744 CDS AWJ20_1744 NC_031672.1 5310419 5311219 R Uncharacterized protein YKL187C complement(5310419..5311219) Sugiyamaella lignohabitans 30033580 AWJ20_1745 CDS AWJ20_1745 NC_031672.1 5314283 5316616 D uncharacterized protein 5314283..5316616 Sugiyamaella lignohabitans 30033581 AWJ20_1746 CDS NAM8 NC_031672.1 5316854 5317486 R RNA binding protein, component of the U1 snRNP protein; mutants are defective in meiotic recombination and in formation of viable spores, involved in the formation of DSBs through meiosis-specific splicing of REC107 pre-mRNA; Nam8p regulon embraces the meiotic pre-mRNAs of REC107, HFM1, AMA1 SPO22 and PCH2; the putative RNA binding domains RRM2 and RRM3 are required for Nam8p meiotic function; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0000243 - commitment complex [Evidence IPI] [PMID 10072386]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23222640]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IPI] [PMID 10072385]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 10072386]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006376 - mRNA splice site selection [Evidence IMP] [PMID 10072385]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10072386]; GO_process: GO:0048026 - positive regulation of mRNA splicing, via spliceosome [Evidence IMP] [PMID 10983980]; Nam8p complement(5316854..5317486) Sugiyamaella lignohabitans 30033582 AWJ20_1747 CDS SPP1 NC_031672.1 5317639 5318976 D Subunit of COMPASS (Set1C); a complex which methylates histone H3 on lysine 4 and is required in telomeric transcriptional silencing; interacts with Orc2p; PHD finger domain protein similar to human CGBP, an unmethylated CpG binding protein; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11687631]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11742990]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11752412]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 18845545]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA] [PMID 11742990]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IMP] [PMID 11752412]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA] [PMID 11805083]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11687631]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11752412]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11805083]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11742990]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA,IMP] [PMID 11752412]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11805083]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 11687631]; Spp1p 5317639..5318976 Sugiyamaella lignohabitans 30033583 AWJ20_1748 CDS HAT2 NC_031672.1 5319146 5321131 R Subunit of the Hat1p-Hat2p histone acetyltransferase complex; required for high affinity binding of the complex to free histone H4, thereby enhancing Hat1p activity; similar to human RbAp46 and 48; has a role in telomeric silencing; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8858151]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9575221]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IPI] [PMID 14761951]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA,IPI] [PMID 8858151]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA] [PMID 9575221]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14761951]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9575221]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 8858151]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 9575221]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 8858151]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IDA] [PMID 8858151]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 10982821]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 8858151]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 9575221]; Hat2p complement(join(5319146..5320312,5321126..5321131)) Sugiyamaella lignohabitans 30033584 AWJ20_1749 CDS AWJ20_1749 NC_031672.1 5322714 5323661 R uncharacterized protein complement(5322714..5323661) Sugiyamaella lignohabitans 30033585 AWJ20_1750 CDS AWJ20_1750 NC_031672.1 5325257 5327227 D uncharacterized protein 5325257..5327227 Sugiyamaella lignohabitans 30033587 AWJ20_1751 CDS RNA1 NC_031672.1 5328648 5329835 R GTPase activating protein (GAP) for Gsp1p; involved in nuclear transport; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 2116418]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8755533]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8755533]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005098 - Ran GTPase activator activity [Evidence IEA]; GO_function: GO:0005098 - Ran GTPase activator activity [Evidence IMP] [PMID 7657689]; GO_function: GO:0005098 - Ran GTPase activator activity [Evidence IDA] [PMID 9305944]; GO_process: GO:0006404 - RNA import into nucleus [Evidence IMP] [PMID 16040803]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 17904525]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032853 - positive regulation of Ran GTPase activity [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IDA] [PMID 7657689]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 11739405]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IMP] [PMID 11739405]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IGI,IMP] [PMID 22008473]; Rna1p complement(5328648..5329835) Sugiyamaella lignohabitans 30033588 AWJ20_1752 CDS AHA1 NC_031672.1 5330617 5331357 D Co-chaperone that binds Hsp82p and activates its ATPase activity; plays a role in determining prion variants; similar to Hch1p; expression is regulated by stresses such as heat shock; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 12504007]; GO_function: GO:0001671 - ATPase activator activity [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 12504007]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 12604615]; GO_function: GO:0051087 - chaperone binding [Evidence IEA]; GO_function: GO:0051087 - chaperone binding [Evidence IDA] [PMID 12504007]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 12504007]; GO_process: GO:0032781 - positive regulation of ATPase activity [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IMP,IPI] [PMID 12504007]; GO_process: GO:0006950 - response to stress [Evidence IEA,IEA]; Aha1p 5330617..5331357 Sugiyamaella lignohabitans 30033589 AWJ20_1753 CDS VPS72 NC_031672.1 5331519 5333501 R similar to S. cerevisiae VPS72 (YDR485C) involved in vacuolar protein sorting; Ca20C1.06c; allele of CaO19.3399; putative vacuolar protein sorting protein complement(5331519..5333501) Sugiyamaella lignohabitans 30033590 AWJ20_1756 CDS WRS1 NC_031672.1 5337564 5338847 D Cytoplasmic tryptophanyl-tRNA synthetase; aminoacylates tryptophanyl-tRNA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004830 - tryptophan-tRNA ligase activity [Evidence IDA] [PMID 9046085]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence TAS] [PMID 10950302]; tryptophan--tRNA ligase WRS1 5337564..5338847 Sugiyamaella lignohabitans 30033593 AWJ20_1757 CDS RIB3 NC_031672.1 5338965 5339582 R 3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase); required for riboflavin biosynthesis from ribulose-5-phosphate, also has an unrelated function in mitochondrial respiration; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12595523]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 12595523]; GO_function: GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA,IEA]; GO_function: GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IMP] [PMID 7559556]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 12595523]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 5366000]; 3,4-dihydroxy-2-butanone-4-phosphate synthase RIB3 complement(5338965..5339582) Sugiyamaella lignohabitans 30033594 AWJ20_1758 CDS ALD4 NC_031672.1 5341554 5343041 D Mitochondrial aldehyde dehydrogenase; required for growth on ethanol and conversion of acetaldehyde to acetate; phosphorylated; activity is K+ dependent; utilizes NADP+ or NAD+ equally as coenzymes; expression is glucose repressed; can substitute for cytosolic NADP-dependent aldehyde dehydrogenase when directed to the cytosol; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IMP] [PMID 9675847]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006740 - NADPH regeneration [Evidence IGI] [PMID 19158096]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IGI] [PMID 10919763]; GO_process: GO:0006067 - ethanol metabolic process [Evidence IMP] [PMID 9675847]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 10409655]; aldehyde dehydrogenase (NADP(+)) ALD4 5341554..5343041 Sugiyamaella lignohabitans 30033595 AWJ20_1759 CDS AWJ20_1759 NC_031672.1 5344489 5351766 D cell surface glycoprotein (predicted) 5344489..5351766 Sugiyamaella lignohabitans 30033596 AWJ20_1760 CDS SKY1 NC_031672.1 5353171 5355306 D serine/threonine protein kinase SKY1 5353171..5355306 Sugiyamaella lignohabitans 30033598 AWJ20_1761 CDS CWC27 NC_031672.1 5355455 5356564 R Component of a complex containing Cef1p; putatively involved in pre-mRNA splicing; has similarity to S. pombe Cwf27p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005684 - U2-type spliceosomal complex [Evidence IDA] [PMID 11884590]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; putative peptidylprolyl isomerase CWC27 complement(5355455..5356564) Sugiyamaella lignohabitans 30033599 AWJ20_1762 CDS GUS1 NC_031672.1 5356791 5358995 D Glutamyl-tRNA synthetase (GluRS); forms a complex with methionyl-tRNA synthetase (Mes1p) and Arc1p; complex formation increases the catalytic efficiency of both tRNA synthetases and ensures their correct localization to the cytoplasm; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0017102 - methionyl glutamyl tRNA synthetase complex [Evidence IDA] [PMID 11069915]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19417106]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004818 - glutamate-tRNA ligase activity [Evidence IDA] [PMID 11069915]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IDA] [PMID 11069915]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA,IEA]; glutamate--tRNA ligase GUS1 5356791..5358995 Sugiyamaella lignohabitans 30033600 AWJ20_1763 CDS RMD8 NC_031672.1 5360586 5363054 R Cytosolic protein required for sporulation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Rmd8p complement(5360586..5363054) Sugiyamaella lignohabitans 30033601 AWJ20_1764 CDS RTF1 NC_031672.1 5363716 5365371 D Subunit of RNAPII-associated chromatin remodeling Paf1 complex; regulates gene expression by directing cotranscriptional histone modification, influences transcription and chromatin structure through several independent functional domains; directly or indirectly regulates DNA-binding properties of Spt15p and relative activities of different TATA elements; involved in transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11884586]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11927560]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643076]; GO_component: GO:0035327 - transcriptionally active chromatin [Evidence IDA] [PMID 12682017]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 20732871]; GO_function: GO:1990269 - RNA polymerase II C-terminal domain phosphoserine binding [Evidence IDA] [PMID 22796944]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 11927560]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 23109428]; GO_process: GO:0070911 - global genome nucleotide-excision repair [Evidence IMP] [PMID 21737840]; GO_process: GO:0016570 - histone modification [Evidence IEA]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 15149594]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15180994]; GO_process: GO:2001165 - positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues [Evidence IMP] [PMID 18469135]; GO_process: GO:2001209 - positive regulation of transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 20299458]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 14710186]; GO_process: GO:0034402 - recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex [Evidence IMP] [PMID 18469135]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 12667454]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 12876293]; GO_process: GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination [Evidence IMP] [PMID 17576814]; GO_process: GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination [Evidence IDA] [PMID 19531475]; GO_process: GO:2001166 - regulation of histone H2B ubiquitination [Evidence IMP] [PMID 12876293]; GO_process: GO:2001166 - regulation of histone H2B ubiquitination [Evidence IMP] [PMID 12876294]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 12667454]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 12876293]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 12876294]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 15180994]; GO_process: GO:2001160 - regulation of histone H3-K79 methylation [Evidence IMP] [PMID 12876293]; GO_process: GO:2001163 - regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues [Evidence IMP] [PMID 15149594]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 11884586]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0090262 - regulation of transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 21737840]; GO_process: GO:0031126 - snoRNA 3'-end processing [Evidence IMP] [PMID 16246725]; GO_process: GO:0001015 - snoRNA transcription from an RNA polymerase II promoter [Evidence IMP] [PMID 16246725]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 11927560]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rtf1p 5363716..5365371 Sugiyamaella lignohabitans 30033602 AWJ20_1765 CDS AWJ20_1765 NC_031672.1 5365721 5366320 D uncharacterized protein 5365721..5366320 Sugiyamaella lignohabitans 30033603 AWJ20_1766 CDS ARG5,6 NC_031672.1 5368632 5371262 D Acetylglutamate kinase and N-acetyl-gamma-glutamyl-phosphate reductase; N-acetyl-L-glutamate kinase (NAGK) catalyzes the 2nd and N-acetyl-gamma-glutamyl-phosphate reductase (NAGSA), the 3rd step in arginine biosynthesis; synthesized as a precursor which is processed in the mitochondrion to yield mature NAGK and NAGSA; enzymes form a metabolon complex with Arg2p; NAGK C-terminal domain stabilizes the enzymes, slows catalysis and is involved in feed-back inhibition by arginine; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 1851947]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA,IEA]; GO_function: GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IDA] [PMID 1851947]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0003991 - acetylglutamate kinase activity [Evidence IEA,IEA]; GO_function: GO:0003991 - acetylglutamate kinase activity [Evidence IDA] [PMID 1851947]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence TAS] [PMID 12603335]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006592 - ornithine biosynthetic process [Evidence TAS] [PMID 1851947]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 15486299]; bifunctional acetylglutamate kinase/N-acetyl-gamma-glutamyl-phosphate reductase 5368632..5371262 Sugiyamaella lignohabitans 30033604 AWJ20_1767 CDS RAD18 NC_031672.1 5374181 5375107 R E3 ubiquitin ligase; forms heterodimer with Rad6p to monoubiquitinate PCNA-K164; heterodimer binds single-stranded DNA and has single-stranded DNA dependent ATPase activity; required for postreplication repair; SUMO-targeted ubiquitin ligase (STUbl) that contains a SUMO-interacting motif (SIM) which stimulates its ubiquitin ligase activity towards the sumoylated form of PCNA; GO_component: GO:0097505 - Rad6-Rad18 complex [Evidence IDA] [PMID 9287349]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10880451]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10880451]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 7926769]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 9287349]; GO_function: GO:0043142 - single-stranded DNA-dependent ATPase activity [Evidence IDA] [PMID 9287349]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0042275 - error-free postreplication DNA repair [Evidence IGI] [PMID 10924462]; GO_process: GO:0042275 - error-free postreplication DNA repair [Evidence IGI] [PMID 9576943]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IGI] [PMID 9409821]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IGI] [PMID 11973297]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IGI] [PMID 15687278]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IMP] [PMID 12226657]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; E3 ubiquitin-protein ligase RAD18 complement(5374181..5375107) Sugiyamaella lignohabitans 30033605 AWJ20_1768 CDS LSB6 NC_031672.1 5375506 5378100 R Type II phosphatidylinositol 4-kinase; binds Las17p, a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12361950]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12523934]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12361950]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12523934]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IEA]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IDA,IMP] [PMID 12361950]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IDA] [PMID 12523934]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA,IMP] [PMID 12361950]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 12523934]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol 4-kinase LSB6 complement(5375506..5378100) Sugiyamaella lignohabitans 30033606 AWJ20_1769 CDS YPS1 NC_031672.1 5378609 5380396 R Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; YPS1 has a paralog, MKC7, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA] [PMID 8389368]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0016485 - protein processing [Evidence IDA] [PMID 8626758]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps1p complement(5378609..5380396) Sugiyamaella lignohabitans 30033607 AWJ20_1770 CDS AMF1 NC_031672.1 5384771 5386348 R Putative paralog of ATR1; but not required for boron tolerance; member of the DHA2 family of drug:H+ antiporters; YOR378W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Amf1p complement(5384771..5386348) Sugiyamaella lignohabitans 30033609 AWJ20_1771 CDS AWJ20_1771 NC_031672.1 5387144 5388715 D uncharacterized protein 5387144..5388715 Sugiyamaella lignohabitans 30033610 AWJ20_1772 CDS CRG1 NC_031672.1 5390519 5391346 D S-AdoMet-dependent methyltransferase involved in lipid homeostasis; mediates resistance to a drug cantharidin; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA] [PMID 22028670]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IMP] [PMID 22028670]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0055088 - lipid homeostasis [Evidence IMP] [PMID 22028670]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; Crg1p 5390519..5391346 Sugiyamaella lignohabitans 30033611 AWJ20_1773 CDS CAR1 NC_031672.1 5391493 5392665 R Arginase, catabolizes arginine to ornithine and urea; expression responds to both induction by arginine and nitrogen catabolite repression; disruption decreases production of carcinogen ethyl carbamate during wine fermentation and also enhances freeze tolerance; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004053 - arginase activity [Evidence IEA,IEA]; GO_function: GO:0004053 - arginase activity [Evidence IMP] [PMID 14582193]; GO_function: GO:0004053 - arginase activity [Evidence IDA] [PMID 2404017]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016813 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IDA] [PMID 1939179]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0090369 - ornithine carbamoyltransferase inhibitor activity [Evidence IDA,IMP] [PMID 12679340]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 1939179]; GO_process: GO:0019547 - arginine catabolic process to ornithine [Evidence IMP] [PMID 14582193]; GO_process: GO:0019547 - arginine catabolic process to ornithine [Evidence IDA] [PMID 2404017]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA,IEA]; GO_process: GO:0090368 - regulation of ornithine metabolic process [Evidence IDA,IMP] [PMID 12679340]; GO_process: GO:0000050 - urea cycle [Evidence IEA]; arginase complement(5391493..5392665) Sugiyamaella lignohabitans 30033612 AWJ20_1774 CDS CWH43 NC_031672.1 5394977 5397550 D Putative sensor/transporter protein involved in cell wall biogenesis; contains 14-16 transmembrane segments and several putative glycosylation and phosphorylation sites; null mutation is synthetically lethal with pkc1 deletion; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11427965]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11427965]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 11427965]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 17714445]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 17761529]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 11427965]; Cwh43p 5394977..5397550 Sugiyamaella lignohabitans 30033613 AWJ20_1775 CDS ECM14 NC_031672.1 5398967 5400790 D Putative metalloprotease with similarity to zinc carboxypeptidases; required for normal cell wall assembly; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence ISS] [PMID 15606766]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence ISS] [PMID 15606766]; Ecm14p 5398967..5400790 Sugiyamaella lignohabitans 30033614 AWJ20_1776 CDS AWJ20_1776 NC_031672.1 5401368 5402009 D uncharacterized protein 5401368..5402009 Sugiyamaella lignohabitans 30033615 AWJ20_1777 CDS AWJ20_1777 NC_031672.1 5402305 5403936 D uncharacterized protein 5402305..5403936 Sugiyamaella lignohabitans 30033616 AWJ20_1778 CDS RAX2 NC_031672.1 5404077 5406671 R N-glycosylated protein; involved in the maintenance of bud site selection during bipolar budding; localization requires Rax1p; RAX2 mRNA stability is regulated by Mpt5p; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11110666]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15356260]; GO_component: GO:0005621 - cellular bud scar [Evidence IDA] [PMID 11110666]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 11110666]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IGI,IMP] [PMID 11110666]; Rax2p complement(5404077..5406671) Sugiyamaella lignohabitans 30033617 AWJ20_1779 CDS RAX2 NC_031672.1 5406704 5408002 R N-glycosylated protein; involved in the maintenance of bud site selection during bipolar budding; localization requires Rax1p; RAX2 mRNA stability is regulated by Mpt5p; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11110666]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15356260]; GO_component: GO:0005621 - cellular bud scar [Evidence IDA] [PMID 11110666]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 11110666]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IGI,IMP] [PMID 11110666]; Rax2p complement(5406704..5408002) Sugiyamaella lignohabitans 30033618 AWJ20_1780 CDS AWJ20_1780 NC_031672.1 5409668 5411938 R Cysteinyl-tRNA synthetase; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IBA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004817 - cysteine-tRNA ligase activity [Evidence IDA] [PMID 9523015]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IDA] [PMID 9523015]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; cysteine--tRNA ligase complement(5409668..5411938) Sugiyamaella lignohabitans 30033620 AWJ20_1781 CDS ATH1 NC_031672.1 5413998 5415650 D Acid trehalase required for utilization of extracellular trehalose; involved in intracellular trehalose degradation during growth recovery after saline stress; GO_component: GO:0030287 - cell wall-bounded periplasmic space [Evidence IDA] [PMID 15128531]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15128531]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IMP] [PMID 7502577]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]; GO_function: GO:0004555 - alpha,alpha-trehalase activity [Evidence IMP] [PMID 7502577]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0071465 - cellular response to desiccation [Evidence IMP] [PMID 8633854]; GO_process: GO:0071361 - cellular response to ethanol [Evidence IMP] [PMID 8633854]; GO_process: GO:0071497 - cellular response to freezing [Evidence IMP] [PMID 8633854]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0005993 - trehalose catabolic process [Evidence IMP] [PMID 7502577]; GO_process: GO:0005993 - trehalose catabolic process [Evidence IDA,IMP,ISS] [PMID 8764988]; alpha,alpha-trehalase ATH1 5413998..5415650 Sugiyamaella lignohabitans 30033621 AWJ20_1782 CDS ATH1 NC_031672.1 5415897 5417294 D Acid trehalase required for utilization of extracellular trehalose; involved in intracellular trehalose degradation during growth recovery after saline stress; GO_component: GO:0030287 - cell wall-bounded periplasmic space [Evidence IDA] [PMID 15128531]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15128531]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IMP] [PMID 7502577]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]; GO_function: GO:0004555 - alpha,alpha-trehalase activity [Evidence IMP] [PMID 7502577]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0071465 - cellular response to desiccation [Evidence IMP] [PMID 8633854]; GO_process: GO:0071361 - cellular response to ethanol [Evidence IMP] [PMID 8633854]; GO_process: GO:0071497 - cellular response to freezing [Evidence IMP] [PMID 8633854]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0005993 - trehalose catabolic process [Evidence IMP] [PMID 7502577]; GO_process: GO:0005993 - trehalose catabolic process [Evidence IDA,IMP,ISS] [PMID 8764988]; alpha,alpha-trehalase ATH1 5415897..5417294 Sugiyamaella lignohabitans 30033622 AWJ20_1783 CDS DAP1 NC_031672.1 5417457 5417975 R Heme-binding protein; involved in regulation of cytochrome P450 protein Erg11p; damage response protein, related to mammalian membrane progesterone receptors; mutations lead to defects in telomeres, mitochondria, and sterol synthesis; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 17954932]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 12684380]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IDA] [PMID 15713626]; GO_process: GO:0032443 - regulation of ergosterol biosynthetic process [Evidence IGI] [PMID 15713626]; GO_process: GO:0032443 - regulation of ergosterol biosynthetic process [Evidence IMP] [PMID 17954932]; Dap1p complement(5417457..5417975) Sugiyamaella lignohabitans 30033623 AWJ20_1784 CDS NIP100 NC_031672.1 5418171 5421563 D Large subunit of the dynactin complex; dynactin is involved in partitioning the mitotic spindle between mother and daughter cells; putative ortholog of mammalian p150(glued); GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 19403691]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 19403691]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005869 - dynactin complex [Evidence IDA] [PMID 9658168]; GO_component: GO:0030286 - dynein complex [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0000922 - spindle pole [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 19403691]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9658168]; GO_function: GO:0008017 - microtubule binding [Evidence ISS] [PMID 9658168]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IMP] [PMID 9658168]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Nip100p 5418171..5421563 Sugiyamaella lignohabitans 30033624 AWJ20_1785 CDS SPT14 NC_031672.1 5421611 5422213 R UDP-glycosyltransferase subunit of the GPI-GnT complex; UDP-GlcNAc-binding and catalytic subunit of the enzyme that mediates the first step in glycosylphosphatidylinositol (GPI) biosynthesis, mutations cause defects in transcription and in biogenesis of cell wall proteins; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IMP] [PMID 9079905]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0000506 - glycosylphosphatidylinositol-N- acetylglucosaminyltransferase (GPI-GnT) complex [Evidence TAS] [PMID 11102867]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0008194 - UDP-glycosyltransferase activity [Evidence ISS] [PMID 10970797]; GO_function: GO:0017176 - phosphatidylinositol N-acetylglucosaminyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence ISS] [PMID 8081362]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; Spt14p complement(5421611..5422213) Sugiyamaella lignohabitans 30033625 AWJ20_1786 CDS TRE1 NC_031672.1 5423686 5426439 D Transferrin receptor-like protein; plasma membrane protein that binds Bsd2p and regulates ubiquitylation and vacuolar degradation of the metal transporter Smf1p; functionally redundant with Tre2p; TRE1 has a paralog, TRE2, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 16456538]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043328 - protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IGI] [PMID 19369420]; Tre1p 5423686..5426439 Sugiyamaella lignohabitans 30033626 AWJ20_1787 CDS RSC4 NC_031672.1 5426594 5428144 R Component of the RSC chromatin remodeling complex; found in close proximity to nucleosomal DNA; displaced from the surface of nucleosomal DNA after chromatin remodeling; acetylated (K25) by Gcn5p, altering replication stress tolerance; contains tandem bromodomains that recognize histone H3 acetylated on K14 (H3K14ac) by Gcn5p; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_function: GO:0070577 - lysine-acetylated histone binding [Evidence IDA] [PMID 20126658]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA,IDA] [PMID 12183366]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 17542652]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rsc4p complement(5426594..5428144) Sugiyamaella lignohabitans 30033627 AWJ20_1789 CDS AWJ20_1789 NC_031672.1 5430442 5431716 D uncharacterized protein 5430442..5431716 Sugiyamaella lignohabitans 30033629 AWJ20_1790 CDS RAD30 NC_031672.1 5432196 5434256 D DNA polymerase eta; involved in translesion synthesis during post-replication repair; catalyzes the synthesis of DNA opposite cyclobutane pyrimidine dimers and other lesions; involved in formation of post-replicative damage-induced genome-wide cohesion; may also have a role in protection against mitochondrial mutagenesis; mutations in human pol eta are responsible for XPV; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 23313845]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23313845]; GO_component: GO:0005657 - replication fork [Evidence IPI] [PMID 11545742]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 10601233]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 9974380]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 23326240]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 10713149]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 10932195]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 11027270]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 9974380]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 10713149]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IMP] [PMID 12110599]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IMP] [PMID 16387871]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 23326240]; Rad30p 5432196..5434256 Sugiyamaella lignohabitans 30033631 AWJ20_1791 CDS AWJ20_1791 NC_031672.1 5434328 5435089 R uncharacterized protein complement(5434328..5435089) Sugiyamaella lignohabitans 30033632 AWJ20_1792 CDS AWJ20_1792 NC_031672.1 5435338 5438379 R uncharacterized protein complement(5435338..5438379) Sugiyamaella lignohabitans 30033633 AWJ20_1793 CDS AWJ20_1793 NC_031672.1 5440860 5441861 R uncharacterized protein complement(5440860..5441861) Sugiyamaella lignohabitans 30033634 AWJ20_1794 CDS AWJ20_1794 NC_031672.1 5442785 5443807 D uncharacterized protein 5442785..5443807 Sugiyamaella lignohabitans 30033635 AWJ20_1795 CDS DTR1 NC_031672.1 5443914 5445482 R Putative dityrosine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; required for spore wall synthesis; sequence similarity to QDR1 and QDR3, and the triple mutant dtr1 qdr1 qdr3 exhibits reduced dityrosine fluorescence relative to the single mutants; expressed during sporulation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 12455697]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 15755916]; GO_function: GO:0005275 - amine transmembrane transporter activity [Evidence IMP] [PMID 12455697]; GO_process: GO:0015837 - amine transport [Evidence IMP] [PMID 12455697]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 12455697]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 12455697]; GO_process: GO:0006810 - transport [Evidence IEA]; Dtr1p complement(5443914..5445482) Sugiyamaella lignohabitans 30033636 AWJ20_1796 CDS RPN12 NC_031672.1 5446313 5447125 D Subunit of the 19S regulatory particle of the 26S proteasome lid; synthetically lethal with RPT1, which is an ATPase component of the 19S regulatory particle; physically interacts with Nob1p and Rpn3p; protein abundance increases in response to DNA replication stress; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005838 - proteasome regulatory particle [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 10490625]; proteasome regulatory particle lid subunit RPN12 5446313..5447125 Sugiyamaella lignohabitans 30033637 AWJ20_1797 CDS MRPS35 NC_031672.1 5449184 5449780 D Mitochondrial ribosomal protein of the small subunit; null mutant does not grow on glycerol, is sensitive to 2,4-dichlorophenol, and accumulates large lipid droplets; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 37S ribosomal protein MRPS35 5449184..5449780 Sugiyamaella lignohabitans 30033638 AWJ20_1798 CDS MRPS35 NC_031672.1 5449926 5450369 D Mitochondrial ribosomal protein of the small subunit; null mutant does not grow on glycerol, is sensitive to 2,4-dichlorophenol, and accumulates large lipid droplets; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 37S ribosomal protein MRPS35 5449926..5450369 Sugiyamaella lignohabitans 30033639 AWJ20_1799 CDS AWJ20_1799 NC_031672.1 5450473 5451579 R uncharacterized protein complement(5450473..5451579) Sugiyamaella lignohabitans 30033640 AWJ20_1800 CDS CHC1 NC_031672.1 5452265 5457490 D Clathrin heavy chain; subunit of the major coat protein involved in intracellular protein transport and endocytosis; the clathrin triskelion is a trimeric molecule composed of three heavy chains that radiate from a vertex and three light chains which bind noncovalently near the vertex of the triskelion; the light chain (CLC1) is thought to regulate function; GO_component: GO:0030132 - clathrin coat of coated pit [Evidence IEA]; GO_component: GO:0030130 - clathrin coat of trans-Golgi network vesicle [Evidence IEA]; GO_component: GO:0030125 - clathrin vesicle coat [Evidence TAS] [PMID 9171338]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence TAS] [PMID 9171338]; GO_process: GO:0006897 - endocytosis [Evidence IDA,IMP] [PMID 16643280]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence TAS] [PMID 9171338]; clathrin heavy chain join(5452265..5452377,5452816..5457490) Sugiyamaella lignohabitans 30033643 AWJ20_1801 CDS TMA20 NC_031672.1 5458096 5458332 D hypothetical protein that associates with ribosomes; has a putative RNA binding domain; interacts with Tma22p; null mutant exhibits translation defects; has homology to human oncogene MCT-1; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 23613772]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 10093218]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP] [PMID 16702403]; GO_process: GO:0006412 - translation [Evidence IEA]; Tma20p 5458096..5458332 Sugiyamaella lignohabitans 30033644 AWJ20_1802 CDS PAC2 NC_031672.1 5458484 5460034 R Microtubule effector required for tubulin heterodimer formation; binds alpha-tubulin, required for normal microtubule function, null mutant exhibits cold-sensitive microtubules and sensitivity to benomyl; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_function: GO:0043014 - alpha-tubulin binding [Evidence IPI] [PMID 9885248]; GO_process: GO:0006457 - protein folding [Evidence IGI,ISS] [PMID 9215891]; GO_process: GO:0007021 - tubulin complex assembly [Evidence IGI] [PMID 9215891]; GO_process: GO:0072668 - tubulin complex biogenesis [Evidence IMP] [PMID 9215891]; Pac2p complement(5458484..5460034) Sugiyamaella lignohabitans 30033645 AWJ20_1803 CDS MRPL17 NC_031672.1 5460360 5461289 D Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; mitochondrial 54S ribosomal protein YmL17/YmL30 5460360..5461289 Sugiyamaella lignohabitans 30033646 AWJ20_1804 CDS AWJ20_1804 NC_031672.1 5461433 5462461 R uncharacterized protein complement(5461433..5462461) Sugiyamaella lignohabitans 30033647 AWJ20_1805 CDS NRD1 NC_031672.1 5462632 5464524 R Nrd1 complex RNA-binding subunit complement(5462632..5464524) Sugiyamaella lignohabitans 30033648 AWJ20_1806 CDS AWJ20_1806 NC_031672.1 5466800 5468272 R U2-snRNP associated splicing factor complement(5466800..5468272) Sugiyamaella lignohabitans 30033649 AWJ20_1807 CDS AWJ20_1807 NC_031672.1 5469094 5469417 R RnaseH domain, transposon factor complement(5469094..5469417) Sugiyamaella lignohabitans 30033650 AWJ20_1809 CDS GAS3 NC_031672.1 5471273 5472238 R Putative 1,3-beta-glucanosyltransferase; has similarity go other GAS family members; low abundance, possibly inactive member of the GAS family of GPI-containing proteins; localizes to the cell wall; mRNA induced during sporulation; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence ISS] [PMID 10769178]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 17397106]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; Gas3p complement(5471273..5472238) Sugiyamaella lignohabitans 30033652 AWJ20_1810 CDS AWJ20_1810 NC_031672.1 5474655 5475170 R uncharacterized protein complement(5474655..5475170) Sugiyamaella lignohabitans 30033654 AWJ20_1811 CDS SLN1 NC_031672.1 5476823 5480344 R Histidine kinase osmosensor that regulates a MAP kinase cascade; transmembrane protein with an intracellular kinase domain that signals to Ypd1p and Ssk1p, thereby forming a phosphorelay system similar to bacterial two-component regulators; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10198019]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 14665464]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8808622]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0009927 - histidine phosphotransfer kinase activity [Evidence IDA,IMP] [PMID 12455952]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005034 - osmosensor activity [Evidence IDA] [PMID 12821642]; GO_function: GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO_function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IDA] [PMID 8808622]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0006469 - negative regulation of protein kinase activity [Evidence IGI,IMP] [PMID 9482735]; GO_process: GO:0007234 - osmosensory signaling via phosphorelay pathway [Evidence IDA] [PMID 8808622]; GO_process: GO:0018106 - peptidyl-histidine phosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA,IEA]; GO_process: GO:0046777 - protein autophosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0023014 - signal transduction by phosphorylation [Evidence IEA]; Sln1p complement(5476823..5480344) Sugiyamaella lignohabitans 30033655 AWJ20_1812 CDS QRI1 NC_031672.1 5483734 5485176 D UDP-N-acetylglucosamine pyrophosphorylase; catalyzes the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), which is important in cell wall biosynthesis, protein N-glycosylation, and GPI anchor biosynthesis; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity [Evidence IEA]; GO_function: GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity [Evidence IDA] [PMID 9603950]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IEA]; GO_process: GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IDA] [PMID 9603950]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; UDP-N-acetylglucosamine diphosphorylase 5483734..5485176 Sugiyamaella lignohabitans 30033656 AWJ20_1813 CDS AWJ20_1813 NC_031672.1 5488517 5490622 R uncharacterized protein complement(5488517..5490622) Sugiyamaella lignohabitans 30033657 AWJ20_1814 CDS AWJ20_1814 NC_031672.1 5491531 5494095 R uncharacterized protein complement(5491531..5494095) Sugiyamaella lignohabitans 30033658 AWJ20_1815 CDS AWJ20_1815 NC_031672.1 5494325 5494687 R uncharacterized protein complement(5494325..5494687) Sugiyamaella lignohabitans 30033659 AWJ20_1816 CDS AWJ20_1816 NC_031672.1 5498221 5500611 D uncharacterized protein 5498221..5500611 Sugiyamaella lignohabitans 30033660 AWJ20_1817 CDS AWJ20_1817 NC_031672.1 5501709 5502457 D uncharacterized protein join(5501709..5501747,5501816..5502457) Sugiyamaella lignohabitans 30033661 AWJ20_1818 CDS MRE11 NC_031672.1 5504112 5505935 R MRX complex nuclease subunit complement(5504112..5505935) Sugiyamaella lignohabitans 30033662 AWJ20_1819 CDS RPL23B NC_031672.1 5510274 5510669 D Ribosomal 60S subunit protein L23B; homologous to mammalian ribosomal protein L23 and bacterial L14; RPL23B has a paralog, RPL23A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L23B 5510274..5510669 Sugiyamaella lignohabitans 30033663 AWJ20_1821 CDS AWJ20_1821 NC_031672.1 5511416 5511730 D uncharacterized protein 5511416..5511730 Sugiyamaella lignohabitans 30033666 AWJ20_1822 CDS TEL1 NC_031672.1 5514898 5521554 D DNA-binding protein kinase TEL1 5514898..5521554 Sugiyamaella lignohabitans 30033667 AWJ20_1823 CDS AWJ20_1823 NC_031672.1 5521632 5521841 D uncharacterized protein 5521632..5521841 Sugiyamaella lignohabitans 30033668 AWJ20_1824 CDS RSM25 NC_031672.1 5521990 5522778 R Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein RSM25 complement(5521990..5522778) Sugiyamaella lignohabitans 30033669 AWJ20_1825 CDS PDB1 NC_031672.1 5524609 5525562 D E1 beta subunit of the pyruvate dehydrogenase (PDH) complex; PDH is an evolutionarily conserved multi-protein complex found in mitochondria; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA] [PMID 2007123]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 8433986]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IMP] [PMID 8433986]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA] [PMID 7947791]; GO_process: GO:0006096 - glycolytic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; pyruvate dehydrogenase (acetyl-transferring) subunit E1 beta 5524609..5525562 Sugiyamaella lignohabitans 30033670 AWJ20_1826 CDS AWJ20_1826 NC_031672.1 5525803 5527428 R uncharacterized protein complement(5525803..5527428) Sugiyamaella lignohabitans 30033671 AWJ20_1827 CDS PUT1 NC_031672.1 5528600 5530072 D Proline oxidase; nuclear-encoded mitochondrial protein involved in utilization of proline as sole nitrogen source; PUT1 transcription is induced by Put3p in the presence of proline and the absence of a preferred nitrogen source; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 3125423]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004657 - proline dehydrogenase activity [Evidence IEA]; GO_function: GO:0004657 - proline dehydrogenase activity [Evidence IDA] [PMID 20450881]; GO_function: GO:0004657 - proline dehydrogenase activity [Evidence IMP] [PMID 387737]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IC] [PMID 387737]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006562 - proline catabolic process [Evidence IEA]; GO_process: GO:0010133 - proline catabolic process to glutamate [Evidence IEA]; GO_process: GO:0010133 - proline catabolic process to glutamate [Evidence IDA] [PMID 20450881]; GO_process: GO:0010133 - proline catabolic process to glutamate [Evidence IMP] [PMID 387737]; GO_process: GO:0006560 - proline metabolic process [Evidence IEA]; proline dehydrogenase 5528600..5530072 Sugiyamaella lignohabitans 30033672 AWJ20_1828 CDS TCB3 NC_031672.1 5531587 5536441 D Cortical ER protein involved in ER-plasma membrane tethering; one of 6 proteins (Ist2p, Scs2p, Scs22p, Tcb1p, Tcb2p, Tcb3p) that connect ER to the plasma membrane (PM) and regulate PM phosphatidylinositol-4-phosphate (PI4P) levels by controlling access of Sac1p phosphatase to its substrate PI4P in the PM; localized to the bud via specific mRNA transport; non-tagged protein detected in a phosphorylated state in mitochondria; C-termini of Tcb1p, Tcb2p and Tcb3p interact; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 13679573]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 22250200]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 23237950]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23237950]; GO_function: GO:0005544 - calcium-dependent phospholipid binding [Evidence IEA]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 15049706]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0090158 - endoplasmic reticulum membrane organization [Evidence IGI] [PMID 23237950]; GO_process: GO:0060304 - regulation of phosphatidylinositol dephosphorylation [Evidence IGI] [PMID 23237950]; Tcb3p join(5531587..5532021,5532128..5536441) Sugiyamaella lignohabitans 30033673 AWJ20_1829 CDS SEC9 NC_031672.1 5536683 5538131 R t-SNARE protein required for secretory vesicle-plasma membrane fusion; similar to but not functionally redundant with Spo20p; interacts non-exocyst bound Sec6p; SNAP-25 homolog; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 9195974]; GO_component: GO:0019897 - extrinsic component of plasma membrane [Evidence IDA] [PMID 7954793]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 16339720]; GO_function: GO:0005484 - SNAP receptor activity [Evidence ISS] [PMID 7954793]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence TAS] [PMID 10047442]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 12913108]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11001046]; Sec9p complement(5536683..5538131) Sugiyamaella lignohabitans 30033674 AWJ20_1830 CDS DPH6 NC_031672.1 5538338 5540293 D Diphthamide synthetase; catalyzes the last amidation step of diphthamide biosynthesis using ammonium and ATP; evolutionarily conserved in eukaryotes; dph6 mutants exhibit diphthine accumulation and resistance to sordarin, which is indicative of defects in diphthamide formation on EF2; green fluorescent protein (GFP)-tagged protein localizes to the cytoplasm; DPH6/YLR143W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0017178 - diphthine-ammonia ligase activity [Evidence IEA]; GO_function: GO:0017178 - diphthine-ammonia ligase activity [Evidence IDA,IMP] [PMID 23169644]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IDA,IMP] [PMID 23169644]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 23468660]; Dph6p 5538338..5540293 Sugiyamaella lignohabitans 30033676 AWJ20_1831 CDS RIB4 NC_031672.1 5540961 5541173 D Lumazine synthase (DMRL synthase); catalyzes synthesis of immediate precursor to riboflavin; DMRL synthase stands for 6,7-dimethyl-8-ribityllumazine synthase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0009349 - riboflavin synthase complex [Evidence IEA]; GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IGI,ISS] [PMID 7559556]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 5366000]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 7559556]; lumazine synthase RIB4 5540961..5541173 Sugiyamaella lignohabitans 30033677 AWJ20_1832 CDS NOP8 NC_031672.1 5541368 5542810 R Nucleolar protein required for 60S ribosomal subunit biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9891085]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9891085]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 9891085]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop8p complement(5541368..5542810) Sugiyamaella lignohabitans 30033678 AWJ20_1833 CDS CTR9 NC_031672.1 5543052 5546324 D Component of the Paf1p complex involved in transcription elongation; binds to and modulates the activity of RNA polymerases I and II; required for expression of a subset of genes, including cyclin genes; involved in SER3 repression by helping to maintain SRG1 transcription-dependent nucleosome occupancy; contains TPR repeats; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 10219085]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11884586]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11927560]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10219085]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643076]; GO_component: GO:0035327 - transcriptionally active chromatin [Evidence IDA] [PMID 15531585]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:1990269 - RNA polymerase II C-terminal domain phosphoserine binding [Evidence IDA] [PMID 22796944]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 11884586]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 11927560]; GO_function: GO:0045142 - triplex DNA binding [Evidence IDA] [PMID 11058104]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 23109428]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 15149594]; GO_process: GO:2001255 - positive regulation of histone H3-K36 trimethylation [Evidence IMP] [PMID 17948059]; GO_process: GO:2001165 - positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues [Evidence IMP] [PMID 18469135]; GO_process: GO:2001209 - positive regulation of transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 20299458]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 18194564]; GO_process: GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination [Evidence IDA] [PMID 19531475]; GO_process: GO:0051569 - regulation of histone H3-K4 methylation [Evidence IMP] [PMID 12667454]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 18194564]; GO_process: GO:0060260 - regulation of transcription initiation from RNA polymerase II promoter [Evidence IMP] [PMID 18194564]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10219085]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0090262 - regulation of transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 21737840]; GO_process: GO:0031126 - snoRNA 3'-end processing [Evidence IMP] [PMID 16246725]; GO_process: GO:0001015 - snoRNA transcription from an RNA polymerase II promoter [Evidence IMP] [PMID 16246725]; GO_process: GO:0006362 - transcription elongation from RNA polymerase I promoter [Evidence IMP] [PMID 19164765]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 11927560]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IGI] [PMID 20299458]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ctr9p 5543052..5546324 Sugiyamaella lignohabitans 30033679 AWJ20_1834 CDS AWJ20_1834 NC_031672.1 5548090 5549154 D uncharacterized protein 5548090..5549154 Sugiyamaella lignohabitans 30033680 AWJ20_1835 CDS AWJ20_1835 NC_031672.1 5549318 5549941 R uncharacterized protein complement(5549318..5549941) Sugiyamaella lignohabitans 30033681 AWJ20_1836 CDS WAR1 NC_031672.1 5550144 5552963 R Homodimeric Zn2Cys6 zinc finger transcription factor; binds to a weak acid response element to induce transcription of PDR12 and FUN34, encoding an acid transporter and a putative ammonia transporter, respectively; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12588995]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IMP,ISS] [PMID 12588995]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0001101 - response to acid [Evidence IMP] [PMID 12588995]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; War1p complement(5550144..5552963) Sugiyamaella lignohabitans 30033682 AWJ20_1837 CDS HMG1 NC_031672.1 5553874 5556933 R HMG-CoA reductase; catalyzes the conversion of HMG-CoA to mevalonate, which is a rate-limiting step in sterol biosynthesis; one of two isozymes; localizes to the nuclear envelope; overproduction induces the formation of karmellae; forms foci at the nuclear periphery upon DNA replication stress; HMG1 has a paralog, HMG2, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8744950]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 3065625]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 8744950]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IEA,IEA]; GO_function: GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IMP] [PMID 2828155]; GO_function: GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IDA] [PMID 3526336]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0015936 - coenzyme A metabolic process [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 9292983]; GO_process: GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IC] [PMID 3526336]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; hydroxymethylglutaryl-CoA reductase (NADPH) HMG1 complement(5553874..5556933) Sugiyamaella lignohabitans 30033683 AWJ20_1838 CDS TRM82 NC_031672.1 5558302 5559639 R Catalytic subunit of a tRNA methyltransferase complex; Trm8p and Trm82p comprise an enzyme that catalyzes a methyl-transfer from S-adenosyl-l-methionine to the N(7) atom of guanine at position 46 in tRNA; Trm8 lacks catalytic activity if not bound to Trm82p; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0043527 - tRNA methyltransferase complex [Evidence IDA] [PMID 12403464]; GO_function: GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IMP] [PMID 12403464]; GO_function: GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IDA] [PMID 17382321]; GO_process: GO:0036265 - RNA (guanine-N7)-methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IMP] [PMID 12403464]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 17382321]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm82p complement(5558302..5559639) Sugiyamaella lignohabitans 30033684 AWJ20_1839 CDS PAC1 NC_031672.1 5563030 5563947 D Involved in nuclear migration, part of the dynein/dynactin pathway; targets dynein to microtubule tips, which is necessary for sliding of microtubules along bud cortex; serves at interface between dynein's ATPase site and its microtubule binding stalk, causing individual dynein motors to remain attached to microtubules for long periods; synthetic lethal with bni1; homolog of human LIS1, mutations in which cause the severe brain disorder lissencephaly; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 12566428]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 15965467]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005875 - microtubule associated complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15965467]; GO_component: GO:0000922 - spindle pole [Evidence IEA]; GO_function: GO:0045502 - dynein binding [Evidence IEA]; GO_function: GO:0051010 - microtubule plus-end binding [Evidence IDA] [PMID 15965467]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006928 - cellular component movement [Evidence IEA]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IEA]; GO_process: GO:0007017 - microtubule-based process [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 12566428]; GO_process: GO:2000582 - positive regulation of plus-end-directed microtubule motor activity [Evidence IMP] [PMID 22939623]; GO_process: GO:0006810 - transport [Evidence IEA]; Pac1p 5563030..5563947 Sugiyamaella lignohabitans 30033685 AWJ20_1840 CDS MAM3 NC_031672.1 5564150 5566471 R Protein required for normal mitochondrial morphology; has similarity to hemolysins; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IMP] [PMID 15498024]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 10628851]; Mam3p complement(5564150..5566471) Sugiyamaella lignohabitans 30033687 AWJ20_1841 CDS ADH4 NC_031672.1 5568216 5569471 R Alcohol dehydrogenase isoenzyme type IV; dimeric enzyme demonstrated to be zinc-dependent despite sequence similarity to iron-activated alcohol dehydrogenases; transcription is induced in response to zinc deficiency; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IMP] [PMID 3023838]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IDA] [PMID 3282541]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0000947 - amino acid catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0006113 - fermentation [Evidence IMP] [PMID 3023838]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; alcohol dehydrogenase ADH4 complement(join(5568216..5568220,5568328..5569471)) Sugiyamaella lignohabitans 30033688 AWJ20_1842 CDS AWJ20_1842 NC_031672.1 5569789 5571228 R Uncharacterized protein RA0937 complement(5569789..5571228) Sugiyamaella lignohabitans 30033689 AWJ20_1843 CDS YAP1 NC_031672.1 5572297 5573982 R DNA-binding transcription factor YAP1 complement(5572297..5573982) Sugiyamaella lignohabitans 30033690 AWJ20_1844 CDS GDB1 NC_031672.1 5578242 5582924 D Glycogen debranching enzyme; contains glucanotranferase and alpha-1,6-amyloglucosidase activities; required for glycogen degradation; phosphorylated in mitochondria; activity is inhibited by Igd1p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IBA]; GO_function: GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA,IEA]; GO_function: GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IDA,IMP] [PMID 11094287]; GO_function: GO:0004135 - amylo-alpha-1,6-glucosidase activity [Evidence IEA,IEA]; GO_function: GO:0004135 - amylo-alpha-1,6-glucosidase activity [Evidence IDA,IMP] [PMID 11094287]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0005980 - glycogen catabolic process [Evidence IEA]; GO_process: GO:0005980 - glycogen catabolic process [Evidence IMP] [PMID 11094287]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; bifunctional 4-alpha-glucanotransferase/amylo-alpha-1,6-glucosidase join(5578242..5580642,5580700..5582924) Sugiyamaella lignohabitans 30033691 AWJ20_1845 CDS rlc1 NC_031672.1 5583353 5583709 D myosin II regulatory light chain Rlc1 5583353..5583709 Sugiyamaella lignohabitans 30033692 AWJ20_1846 CDS RPO26 NC_031672.1 5583929 5584525 R RNA polymerase subunit ABC23; common to RNA polymerases I, II, and III; part of central core; similar to bacterial omega subunit; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IEA]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0001055 - RNA polymerase II activity [Evidence IDA] [PMID 8288647]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12697831]; GO_process: GO:0006383 - transcription from RNA polymerase III promoter [Evidence IMP] [PMID 12697831]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase core subunit RPB6 complement(join(5583929..5584385,5584506..5584525)) Sugiyamaella lignohabitans 30033693 AWJ20_1847 CDS tam14 NC_031672.1 5585140 5586291 D top hit is XP_002839470.1 originated in Tuber melanosporum Mel28; conserved fungal protein; uncharacterized protein 5585140..5586291 Sugiyamaella lignohabitans 30033694 AWJ20_1848 CDS FRE3 NC_031672.1 5587023 5587985 R Ferric reductase; reduces siderophore-bound iron prior to uptake by transporters; expression induced by low iron levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9726978]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11120744]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IGI] [PMID 11120744]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence ISA] [PMID 9726978]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEP,IMP] [PMID 10341420]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEP,IMP] [PMID 9726978]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015891 - siderophore transport [Evidence IMP] [PMID 9726978]; Fre3p complement(5587023..5587985) Sugiyamaella lignohabitans 30033695 AWJ20_1849 CDS PPT1 NC_031672.1 5591312 5592784 D Protein serine/threonine phosphatase; regulates Hsp90 chaperone by affecting its ATPase and cochaperone binding activities; has similarity to human phosphatase PP5; present in both the nucleus and cytoplasm; expressed during logarithmic growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12694636]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12694636]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 12694636]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence ISS] [PMID 7925273]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA,ISS] [PMID 7925273]; Ppt1p 5591312..5592784 Sugiyamaella lignohabitans 30033696 AWJ20_1850 CDS NOP16 NC_031672.1 5592945 5593541 R Constituent of 66S pre-ribosomal particles; involved in 60S ribosomal subunit biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop16p complement(5592945..5593541) Sugiyamaella lignohabitans 30033698 AWJ20_1851 CDS PMI40 NC_031672.1 5593762 5595027 R Mannose-6-phosphate isomerase; catalyzes the interconversion of fructose-6-P and mannose-6-P; required for early steps in protein mannosylation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IDA] [PMID 8011630]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IMP] [PMID 1377774]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 1377774]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 1377774]; mannose-6-phosphate isomerase PMI40 complement(5593762..5595027) Sugiyamaella lignohabitans 30033699 AWJ20_1852 CDS AWJ20_1852 NC_031672.1 5595872 5596579 D dynactin subunit 5 5595872..5596579 Sugiyamaella lignohabitans 30033700 AWJ20_1853 CDS BZZ1 NC_031672.1 5598866 5600806 R SH3 domain protein implicated in regulating actin polymerization; able to recruit actin polymerization machinery through its SH3 domains; colocalizes with cortical actin patches and Las17p; interacts with type I myosins; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 12391157]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16824951]; GO_function: GO:0008047 - enzyme activator activity [Evidence IMP] [PMID 16824951]; GO_process: GO:0007015 - actin filament organization [Evidence IPI] [PMID 12391157]; GO_process: GO:0045010 - actin nucleation [Evidence IMP] [PMID 16824951]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 16231105]; GO_process: GO:0009651 - response to salt stress [Evidence IGI,IPI] [PMID 12391157]; Bzz1p complement(5598866..5600806) Sugiyamaella lignohabitans 30033701 AWJ20_1854 CDS NTF2 NC_031672.1 5601860 5602129 D Nuclear envelope protein; interacts with GDP-bound Gsp1p and with proteins of the nuclear pore to transport Gsp1p into the nucleus where it is an essential player in nucleocytoplasmic transport; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 8702493]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IPI] [PMID 10889207]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IMP] [PMID 8702493]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 8702493]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Ntf2p 5601860..5602129 Sugiyamaella lignohabitans 30033702 AWJ20_1855 CDS AWJ20_1855 NC_031672.1 5602327 5603841 R uncharacterized protein complement(5602327..5603841) Sugiyamaella lignohabitans 30033703 AWJ20_1856 CDS AWJ20_1856 NC_031672.1 5604561 5605358 D uncharacterized protein 5604561..5605358 Sugiyamaella lignohabitans 30033704 AWJ20_1857 CDS tam14 NC_031672.1 5606314 5606961 R top hit is XP_002839470.1 originated in Tuber melanosporum Mel28; conserved fungal protein; uncharacterized protein complement(5606314..5606961) Sugiyamaella lignohabitans 30033705 AWJ20_1858 CDS MSE1 NC_031672.1 5608366 5610060 D Mitochondrial glutamyl-tRNA synthetase; predicted to be palmitoylated; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 7607232]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004818 - glutamate-tRNA ligase activity [Evidence ISA] [PMID 7607232]; GO_function: GO:0050561 - glutamate-tRNA(Gln) ligase activity [Evidence IDA] [PMID 15706032]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_process: GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006424 - glutamyl-tRNA aminoacylation [Evidence ISA] [PMID 7607232]; GO_process: GO:0070149 - mitochondrial glutamyl-tRNA aminoacylation [Evidence IC] [PMID 7607232]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 7607232]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; glutamate--tRNA ligase MSE1 5608366..5610060 Sugiyamaella lignohabitans 30033706 AWJ20_1859 CDS SMC5 NC_031672.1 5610117 5613269 R Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; binds single-stranded DNA and has ATPase activity; S. pombe homolog forms a heterodimer with S. pombe Rad18p that is involved in DNA repair; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IEA]; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IDA] [PMID 15738391]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11927594]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 21293191]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IDA] [PMID 15738391]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 16793545]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 21293191]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 11927594]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15738391]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0051304 - chromosome separation [Evidence IMP] [PMID 15793567]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IEA]; GO_process: GO:0000725 - recombinational repair [Evidence IPI] [PMID 19995966]; GO_process: GO:0071139 - resolution of recombination intermediates [Evidence IMP] [PMID 20159973]; DNA repair ATPase SMC5 complement(5610117..5613269) Sugiyamaella lignohabitans 30033707 AWJ20_1860 CDS AWJ20_1860 NC_031672.1 5614172 5615476 D uncharacterized protein 5614172..5615476 Sugiyamaella lignohabitans 30033709 AWJ20_1861 CDS AWJ20_1861 NC_031672.1 5615706 5616470 R Peripheral peroxisomal membrane peroxin complement(5615706..5616470) Sugiyamaella lignohabitans 30033710 AWJ20_1862 CDS AWJ20_1862 NC_031672.1 5617787 5618860 D uncharacterized protein 5617787..5618860 Sugiyamaella lignohabitans 30033711 AWJ20_1863 CDS CAB1 NC_031672.1 5619531 5620751 R Pantothenate kinase, ATP:D-pantothenate 4'-phosphotransferase; catalyzes the first committed step in the universal biosynthetic pathway for synthesis of coenzyme A (CoA); transcriptionally regulated by Upc2p via a sterol response element; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004594 - pantothenate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004594 - pantothenate kinase activity [Evidence IMP] [PMID 19266201]; GO_function: GO:0004594 - pantothenate kinase activity [Evidence ISS] [PMID 9890959]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IGI] [PMID 19266201]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 9890959]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; pantothenate kinase complement(5619531..5620751) Sugiyamaella lignohabitans 30033712 AWJ20_1864 CDS APA1 NC_031672.1 5621918 5622901 D AP4A phosphorylase; bifunctional diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase and ADP sulfurylase involved in catabolism of bis(5'-nucleosidyl) tetraphosphates; catalyzes phosphorolysis of dinucleoside oligophosphates, cleaving substrates' alpha/beta-anhydride bond and introducing Pi into the beta-position of the corresponding NDP formed; protein abundance increases under DNA replication stress; APA1 has a paralog, APA2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003877 - ATP adenylyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008796 - bis(5'-nucleosyl)-tetraphosphatase activity [Evidence IDA,IGI,IMP] [PMID 2174863]; GO_function: GO:0008796 - bis(5'-nucleosyl)-tetraphosphatase activity [Evidence IDA,IMP] [PMID 2556364]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0004780 - sulfate adenylyltransferase (ADP) activity [Evidence IEA]; GO_function: GO:0004780 - sulfate adenylyltransferase (ADP) activity [Evidence IDA,IMP] [PMID 2556364]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009164 - nucleoside catabolic process [Evidence IDA,IGI,IMP] [PMID 2174863]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IDA] [PMID 2172926]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IEA]; Apa1p 5621918..5622901 Sugiyamaella lignohabitans 30033713 AWJ20_1865 CDS MRM1 NC_031672.1 5623073 5624599 R Ribose methyltransferase; modifies a functionally critical, conserved nucleotide in mitochondrial 21S rRNA; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 8643404]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008173 - RNA methyltransferase activity [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008989 - rRNA (guanine-N1-)-methyltransferase activity [Evidence IDA] [PMID 8643404]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0001510 - RNA methylation [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0000154 - rRNA modification [Evidence IDA] [PMID 8643404]; Mrm1p complement(5623073..5624599) Sugiyamaella lignohabitans 30033714 AWJ20_1866 CDS QCR7 NC_031672.1 5625083 5625391 D Subunit 7 of ubiquinol cytochrome-c reductase (Complex III); Complex III is a component of the mitochondrial inner membrane electron transport chain; oriented facing the mitochondrial matrix; N-terminus appears to play a role in complex assembly; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IEA]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 10873857]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IMP] [PMID 2540976]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 2540976]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IEA]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IMP] [PMID 2540976]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 11556808]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; ubiquinol--cytochrome-c reductase subunit 7 5625083..5625391 Sugiyamaella lignohabitans 30033715 AWJ20_1867 CDS KIC1 NC_031672.1 5625888 5629076 R putative serine/threonine protein kinase KIC1 complement(5625888..5629076) Sugiyamaella lignohabitans 30033716 AWJ20_1868 CDS HIS3 NC_031672.1 5629637 5630290 R Imidazoleglycerol-phosphate dehydratase; catalyzes the sixth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control via Gcn4p; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IMP] [PMID 14190241]; GO_function: GO:0004424 - imidazoleglycerol-phosphate dehydratase activity [Evidence IDA] [PMID 341150]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IMP] [PMID 14190241]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IDA] [PMID 341150]; imidazoleglycerol-phosphate dehydratase HIS3 complement(5629637..5630290) Sugiyamaella lignohabitans 30033717 AWJ20_1869 CDS AWJ20_1869 NC_031672.1 5630559 5631962 R Putative hydrolase acting on ester bonds; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; putative hydrolase complement(5630559..5631962) Sugiyamaella lignohabitans 30033718 AWJ20_1870 CDS AWJ20_1870 NC_031672.1 5632478 5634466 R uncharacterized protein complement(5632478..5634466) Sugiyamaella lignohabitans 30033720 AWJ20_1871 CDS IFA38 NC_031672.1 5639366 5640442 R similar to Coprinopsis cinerea okayama7#130 XP_001830383.1; ketoreductase complement(5639366..5640442) Sugiyamaella lignohabitans 30033721 AWJ20_1872 CDS NAP1 NC_031672.1 5642187 5643536 D Histone chaperone; involved in histone exchange by removing and replacing histone H2A-H2B dimers or histone variant dimers from assembled nucleosomes; involved in the transport of H2A and H2B histones to the nucleus; required for the regulation of microtubule dynamics during mitosis; interacts with mitotic cyclin Clb2p; controls bud morphogenesis; phosphorylated by CK2; protein abundance increases in response to DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 7622566]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 10767562]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0030332 - cyclin binding [Evidence IPI] [PMID 7622566]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 22308335]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 17289584]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 21348863]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI,IMP] [PMID 13680156]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA] [PMID 1400414]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA,ISS] [PMID 2016313]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IDA] [PMID 22308335]; GO_process: GO:0031116 - positive regulation of microtubule polymerization [Evidence IMP] [PMID 7622567]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 22308335]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12456659]; histone chaperone NAP1 5642187..5643536 Sugiyamaella lignohabitans 30033722 AWJ20_1873 CDS AWJ20_1873 NC_031672.1 5645601 5647403 D uncharacterized protein 5645601..5647403 Sugiyamaella lignohabitans 30033723 AWJ20_1874 CDS HUL5 NC_031672.1 5647717 5650833 D Multiubiquitin chain assembly factor (E4); proteasome processivity factor that elongates polyUb chains on substrates, opposing Ubp6p, a branched polyubiquitin protease; required for retrograde transport of misfolded proteins during ERAD; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000502 - proteasome complex [Evidence IDA] [PMID 12408819]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0034450 - ubiquitin-ubiquitin ligase activity [Evidence IDA] [PMID 17190603]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17190603]; GO_process: GO:0010994 - free ubiquitin chain polymerization [Evidence IMP] [PMID 22497224]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA] [PMID 17190603]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IBA]; ubiquitin-ubiquitin ligase HUL5 5647717..5650833 Sugiyamaella lignohabitans 30033724 AWJ20_1876 CDS AWJ20_1876 NC_031672.1 5661317 5662411 R uncharacterized protein complement(5661317..5662411) Sugiyamaella lignohabitans 30033726 AWJ20_1877 CDS AWJ20_1877 NC_031672.1 5664769 5665902 D uncharacterized protein 5664769..5665902 Sugiyamaella lignohabitans 30033727 AWJ20_1878 CDS AWJ20_1878 NC_031672.1 5666418 5666963 R uncharacterized protein complement(5666418..5666963) Sugiyamaella lignohabitans 30033728 AWJ20_1879 CDS DSF2 NC_031672.1 5669896 5671587 D Deletion suppressor of mpt5 mutation; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Dsf2p 5669896..5671587 Sugiyamaella lignohabitans 30033729 AWJ20_1880 CDS AWJ20_1880 NC_031672.1 5677865 5679520 D uncharacterized protein 5677865..5679520 Sugiyamaella lignohabitans 30033731 AWJ20_1881 CDS MLH1 NC_031672.1 5679572 5681872 R Protein required for mismatch repair in mitosis and meiosis; also required for crossing over during meiosis; forms a complex with Pms1p and Msh2p-Msh3p during mismatch repair; human homolog is associated with hereditary non-polyposis colon cancer; GO_component: GO:0032389 - MutLalpha complex [Evidence IPI] [PMID 10570173]; GO_component: GO:0097587 - MutLgamma complex [Evidence IPI] [PMID 9770499]; GO_component: GO:0005712 - chiasma [Evidence IBA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000795 - synaptonemal complex [Evidence IBA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 10938116]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 11717305]; GO_function: GO:0032135 - DNA insertion or deletion binding [Evidence IDA] [PMID 9368761]; GO_function: GO:0032139 - dinucleotide insertion or deletion binding [Evidence IDA] [PMID 9368761]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 11575920]; GO_function: GO:0000404 - heteroduplex DNA loop binding [Evidence IDA] [PMID 9368761]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 11575920]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000713 - meiotic heteroduplex formation [Evidence IMP] [PMID 15654114]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 16702432]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 23316435]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 2685551]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 10570173]; mismatch repair ATPase MLH1 complement(5679572..5681872) Sugiyamaella lignohabitans 30033732 AWJ20_1882 CDS NSE4 NC_031672.1 5682218 5683222 D Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IEA]; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IDA] [PMID 15738391]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IDA] [PMID 15738391]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15738391]; GO_process: GO:0006281 - DNA repair [Evidence IMP,IPI] [PMID 15752197]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; Nse4p 5682218..5683222 Sugiyamaella lignohabitans 30033733 AWJ20_1883 CDS QRI7 NC_031672.1 5683670 5684941 R Protein involved in threonylcarbamoyl adenosine biosynthesis; Sua5p and Qri7p are necessary and sufficient for RNA t6A modification in vitro; highly conserved mitochondrial protein; essential for t6A modification of mitochondrial tRNAs that decode ANN codons; similar to Kae1p and E. coli YgjD, both of which are also required for tRNA t6A modification; when directed to the cytoplasm, complements the essential function of Kae1p in the KEOPS complex; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0072670 - mitochondrial tRNA threonylcarbamoyladenosine modification [Evidence IMP] [PMID 21183954]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0070526 - threonylcarbamoyladenosine biosynthetic process [Evidence IEA]; GO_process: GO:0070526 - threonylcarbamoyladenosine biosynthetic process [Evidence IDA] [PMID 23620299]; Qri7p complement(5683670..5684941) Sugiyamaella lignohabitans 30033734 AWJ20_1884 CDS ALD2 NC_031672.1 5685937 5687436 D Cytoplasmic aldehyde dehydrogenase; involved in ethanol oxidation and beta-alanine biosynthesis; uses NAD+ as the preferred coenzyme; expression is stress induced and glucose repressed; very similar to Ald3p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence ISS] [PMID 8801420]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence ISS] [PMID 10407263]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IMP] [PMID 12586697]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0019483 - beta-alanine biosynthetic process [Evidence IMP] [PMID 12586697]; GO_process: GO:0006081 - cellular aldehyde metabolic process [Evidence ISS] [PMID 10407263]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IEA]; GO_process: GO:0006598 - polyamine catabolic process [Evidence IGI,IMP] [PMID 12586697]; aldehyde dehydrogenase (NAD(+)) ALD2 5685937..5687436 Sugiyamaella lignohabitans 30033735 AWJ20_1885 CDS ISA1 NC_031672.1 5688497 5689315 D Protein required for maturation of mitochondrial [4Fe-4S] proteins; functions in a complex with Isa2p and possibly Iba57p; isa1 deletion causes loss of mitochondrial DNA and respiratory deficiency; depletion reduces growth on nonfermentable carbon sources; functional ortholog of bacterial A-type ISC proteins; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 10805735]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IDA] [PMID 21987576]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence ISA] [PMID 10748136]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_process: GO:0009102 - biotin biosynthetic process [Evidence IGI,IMP] [PMID 17259550]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 10748136]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IGI,IMP] [PMID 10805735]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 12065597]; Isa1p 5688497..5689315 Sugiyamaella lignohabitans 30033736 AWJ20_1886 CDS CDC4 NC_031672.1 5689476 5692619 R F-box protein required for both the G1/S and G2/M phase transitions; modular substrate specificity factor which associates with core SCF (Cdc53p, Skp1p and Hrt1p/Rbx1p) to form the SCFCdc4 complex; SCFCdc4 acts as a ubiquitin-protein ligase directing ubiquitination of cyclin-dependent kinase (CDK) phosphorylated substrates, such as: Sic1p, Far1p, Cdc6p, Clb6p, and Cln3p; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346238]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346239]; GO_component: GO:0043224 - nuclear SCF ubiquitin ligase complex [Evidence IDA] [PMID 11080155]; GO_component: GO:0016363 - nuclear matrix [Evidence IDA] [PMID 2244914]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11080155]; GO_function: GO:0050815 - phosphoserine binding [Evidence IDA] [PMID 23314252]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_function: GO:0061630 - ubiquitin protein ligase activity [Evidence IDA] [PMID 9346238]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 9346239]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10409741]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 10409741]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 7954792]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 328339]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; SCF ubiquitin ligase complex subunit CDC4 complement(5689476..5692619) Sugiyamaella lignohabitans 30033737 AWJ20_1887 CDS AWJ20_1887 NC_031672.1 5695329 5696006 R uncharacterized protein complement(5695329..5696006) Sugiyamaella lignohabitans 30033738 AWJ20_1888 CDS ULP1 NC_031672.1 5698612 5701362 D SUMO protease ULP1 5698612..5701362 Sugiyamaella lignohabitans 30033739 AWJ20_1889 CDS YME2 NC_031672.1 5701473 5704406 R Integral inner mitochondrial membrane protein; role in maintaining mitochondrial nucleoid structure and number; mutants exhibit an increased rate of mitochondrial DNA escape; shows some sequence similarity to exonucleases; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 8649384]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 8514129]; Yme2p complement(5701473..5704406) Sugiyamaella lignohabitans 30033740 AWJ20_1890 CDS NAR1 NC_031672.1 5705283 5706854 D Subunit of the cytosolic iron-sulfur (FeS) protein assembly machinery; required for maturation of cytosolic and nuclear FeS proteins and for normal resistance to oxidative stress; deficiency results in shortened lifespan and sensitivity to paraquat; homologous to human Narf; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15103330]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 15103330]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0008901 - ferredoxin hydrogenase activity [Evidence ISS] [PMID 10514485]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IDA] [PMID 19385603]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 15103330]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 19385603]; Nar1p 5705283..5706854 Sugiyamaella lignohabitans 30033742 AWJ20_1891 CDS ZWF1 NC_031672.1 5710151 5711500 D Glucose-6-phosphate dehydrogenase (G6PD); catalyzes the first step of the pentose phosphate pathway; involved in adapting to oxidative stress; homolog of the human G6PD which is deficient in patients with hemolytic anemia; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IMP] [PMID 2001672]; GO_function: GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IMP] [PMID 2269430]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006740 - NADPH regeneration [Evidence IMP] [PMID 2269430]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0045013 - carbon catabolite repression of transcription [Evidence IMP] [PMID 2269430]; GO_process: GO:0006006 - glucose metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA]; GO_process: GO:0009051 - pentose-phosphate shunt, oxidative branch [Evidence IMP] [PMID 7045591]; GO_process: GO:0009051 - pentose-phosphate shunt, oxidative branch [Evidence IMP] [PMID 8299150]; GO_process: GO:0042542 - response to hydrogen peroxide [Evidence IMP] [PMID 7586028]; GO_process: GO:0042542 - response to hydrogen peroxide [Evidence IMP] [PMID 9480895]; glucose-6-phosphate dehydrogenase 5710151..5711500 Sugiyamaella lignohabitans 30033743 AWJ20_1892 CDS GNA1 NC_031672.1 5711960 5712532 R Glucosamine-6-phosphate acetyltransferase; evolutionarily conserved; required for multiple cell cycle events including passage through START, DNA synthesis, and mitosis; involved in UDP-N-acetylglucosamine synthesis, forms GlcNAc6P from AcCoA; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004343 - glucosamine 6-phosphate N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004343 - glucosamine 6-phosphate N-acetyltransferase activity [Evidence IDA] [PMID 9867860]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IEA]; GO_process: GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IDA,IMP] [PMID 9867860]; glucosamine 6-phosphate N-acetyltransferase complement(5711960..5712532) Sugiyamaella lignohabitans 30033744 AWJ20_1893 CDS AWJ20_1893 NC_031672.1 5714639 5715682 R Putative dihydrokaempferol 4-reductase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence ISA] [PMID 19577617]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; carbonyl reductase (NADPH-dependent) complement(5714639..5715682) Sugiyamaella lignohabitans 30033745 AWJ20_1894 CDS MNL2 NC_031672.1 5717123 5719945 D Putative mannosidase involved in ER-associated protein degradation; localizes to the endoplasmic reticulum; sequence similarity with seven-hairpin glycosidase (GH47) family members, such as Mns1p and Mnl1p, that hydrolyze 1,2-linked alpha-D-mannose residues; non-essential gene; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 21971548]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 21971548]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; putative mannosidase MNL2 5717123..5719945 Sugiyamaella lignohabitans 30033746 AWJ20_1895 CDS GDH1 NC_031672.1 5720504 5721865 R NADP(+)-dependent glutamate dehydrogenase; synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh3p; expression regulated by nitrogen and carbon sources; GDH1 has a paralog, GDH3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 4126]; GO_function: GO:0004354 - glutamate dehydrogenase (NADP+) activity [Evidence IEA]; GO_function: GO:0004354 - glutamate dehydrogenase (NADP+) activity [Evidence IDA] [PMID 11562373]; GO_function: GO:0004354 - glutamate dehydrogenase (NADP+) activity [Evidence IDA,IMP] [PMID 2932370]; GO_function: GO:0004354 - glutamate dehydrogenase (NADP+) activity [Evidence IDA,IMP] [PMID 2989290]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0019676 - ammonia assimilation cycle [Evidence IEP] [PMID 11356843]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IGI] [PMID 2932370]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IGI] [PMID 2989290]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glutamate dehydrogenase (NADP(+)) GDH1 complement(5720504..5721865) Sugiyamaella lignohabitans 30033747 AWJ20_1896 CDS YTP1 NC_031672.1 5724620 5726005 R Probable type-III integral membrane hypothetical protein; has regions of similarity to mitochondrial electron transport proteins; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 8635735]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Ytp1p complement(5724620..5726005) Sugiyamaella lignohabitans 30033748 AWJ20_1897 CDS YDJ1 NC_031672.1 5728011 5729303 R Type I HSP40 co-chaperone; involved in regulation of HSP90 and HSP70 functions; critical for determining cell size at Start as a function of growth rate; involved in protein translocation across membranes; member of the DnaJ family; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 1869583]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8144572]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 1869583]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 1400408]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 15342786]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 9774392]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 10567418]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 15342786]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9674429]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 1473150]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IMP] [PMID 1729605]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; type I HSP40 co-chaperone YDJ1 complement(5728011..5729303) Sugiyamaella lignohabitans 30033749 AWJ20_1898 CDS MDM10 NC_031672.1 5729874 5731019 D Subunit of both the ERMES and the SAM complex; component of ERMES complex which acts as a molecular tether between the mitochondria and the ER, necessary for efficient phospholipid exchange between organelles and for mitophagy; SAM/TOB complex component that functions in the assembly of outer membrane beta-barrel proteins; involved in mitochondrial inheritance and morphology; GO_component: GO:0032865 - ERMES complex [Evidence IEA,IEA]; GO_component: GO:0032865 - ERMES complex [Evidence IPI] [PMID 13679517]; GO_component: GO:0032865 - ERMES complex [Evidence IPI] [PMID 17410204]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0001401 - mitochondrial sorting and assembly machinery complex [Evidence IPI] [PMID 17410204]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051654 - establishment of mitochondrion localization [Evidence IMP] [PMID 13679517]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IEA]; GO_process: GO:0070096 - mitochondrial outer membrane translocase complex assembly [Evidence IMP] [PMID 15239954]; GO_process: GO:0070096 - mitochondrial outer membrane translocase complex assembly [Evidence IMP,IPI] [PMID 20026336]; GO_process: GO:0007005 - mitochondrion organization [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 19556461]; GO_process: GO:0015914 - phospholipid transport [Evidence IGI] [PMID 19556461]; GO_process: GO:0006461 - protein complex assembly [Evidence IEA]; GO_process: GO:0045040 - protein import into mitochondrial outer membrane [Evidence IEA]; GO_process: GO:0045040 - protein import into mitochondrial outer membrane [Evidence IMP] [PMID 17410204]; Mdm10p 5729874..5731019 Sugiyamaella lignohabitans 30033750 AWJ20_1899 CDS AWJ20_1899 NC_031672.1 5731508 5733211 D uncharacterized protein 5731508..5733211 Sugiyamaella lignohabitans 30033751 AWJ20_1900 CDS FMO1 NC_031672.1 5733624 5735102 D Flavin-containing monooxygenase; localized to the cytoplasmic face of the ER membrane; catalyzes oxidation of biological thiols to maintain the ER redox buffer ratio for correct folding of disulfide-bonded proteins; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10077572]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IEA]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IDA] [PMID 10600176]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 10077572]; Fmo1p 5733624..5735102 Sugiyamaella lignohabitans 30033754 AWJ20_1901 CDS TOM22 NC_031672.1 5735417 5735863 D Component of the TOM (Translocase of Outer Membrane) complex; responsible for initial import of mitochondrially directed proteins; mediates interaction between TOM and TIM complexes and acts as a receptor for precursor proteins; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16689936]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005742 - mitochondrial outer membrane translocase complex [Evidence IDA] [PMID 9774667]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015266 - protein channel activity [Evidence IMP] [PMID 10519552]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 10519552]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 9774667]; GO_process: GO:0045040 - protein import into mitochondrial outer membrane [Evidence IMP] [PMID 12628251]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tom22p 5735417..5735863 Sugiyamaella lignohabitans 30033755 AWJ20_1902 CDS YPS3 NC_031672.1 5736134 5737369 R Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p complement(5736134..5737369) Sugiyamaella lignohabitans 30033756 AWJ20_1903 CDS OPT2 NC_031672.1 5738088 5740100 D Oligopeptide transporter; member of the OPT family, with potential orthologs in S. pombe and C. albicans; also plays a role in formation of mature vacuoles; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IC] [PMID 9643541]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 19767828]; Opt2p 5738088..5740100 Sugiyamaella lignohabitans 30033757 AWJ20_1904 CDS FTH1 NC_031672.1 5741989 5743224 D Putative high affinity iron transporter; involved in transport of intravacuolar stores of iron; forms complex with Fet5p; expression is regulated by iron; proposed to play indirect role in endocytosis; protein abundance increases in response to DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 10608875]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005381 - iron ion transmembrane transporter activity [Evidence TAS] [PMID 10608875]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 11378903]; GO_process: GO:0006827 - high-affinity iron ion transport [Evidence IPI] [PMID 10608875]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Fth1p 5741989..5743224 Sugiyamaella lignohabitans 30033758 AWJ20_1905 CDS NPC2 NC_031672.1 5743494 5744039 R Functional homolog of human NPC2/He1; human NPC2 is a cholesterol-binding protein whose deficiency causes Niemann-Pick type C2 disease involving retention of cholesterol in lysosomes; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 16278452]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032366 - intracellular sterol transport [Evidence IGI,ISS] [PMID 16278452]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Npc2p complement(5743494..5744039) Sugiyamaella lignohabitans 30033759 AWJ20_1907 CDS AWJ20_1907 NC_031672.1 5751765 5755508 D uncharacterized protein 5751765..5755508 Sugiyamaella lignohabitans 30033760 AWJ20_1908 CDS AWJ20_1908 NC_031672.1 5760721 5762037 D uncharacterized protein 5760721..5762037 Sugiyamaella lignohabitans 30033761 AWJ20_1910 CDS UGA4 NC_031672.1 5762761 5764110 R GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p complement(5762761..5764110) Sugiyamaella lignohabitans 30033764 AWJ20_1911 CDS AWJ20_1911 NC_031672.1 5766410 5767768 R Pdp3p complement(5766410..5767768) Sugiyamaella lignohabitans 30033765 AWJ20_1912 CDS AWJ20_1912 NC_031672.1 5770658 5772316 D uncharacterized protein 5770658..5772316 Sugiyamaella lignohabitans 30033766 AWJ20_1913 CDS MCM1 NC_031672.1 5773663 5774448 R transcription factor MCM1 complement(5773663..5774448) Sugiyamaella lignohabitans 30033767 AWJ20_1914 CDS ANB1 NC_031672.1 5782429 5782842 R Translation elongation factor eIF-5A; may function in translation initiation; structural homolog of bacterial EF-P; undergoes an essential hypusination modification; HYP2 has a paralog, ANB1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IPI] [PMID 16215987]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 19120453]; GO_function: GO:0043022 - ribosome binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IPI] [PMID 16215987]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA,IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IDA,IMP] [PMID 19424157]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 21451136]; GO_process: GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IEA]; GO_process: GO:0045901 - positive regulation of translational elongation [Evidence IEA]; GO_process: GO:0045901 - positive regulation of translational elongation [Evidence IGI,IMP] [PMID 19338753]; GO_process: GO:0045901 - positive regulation of translational elongation [Evidence IDA,IMP] [PMID 19424157]; GO_process: GO:0045948 - positive regulation of translational initiation [Evidence IDA] [PMID 21451136]; GO_process: GO:0045905 - positive regulation of translational termination [Evidence IEA]; GO_process: GO:0045905 - positive regulation of translational termination [Evidence IDA] [PMID 19424157]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA]; GO_process: GO:0006452 - translational frameshifting [Evidence IEA]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 19424157]; translation elongation factor eIF-5A complement(5782429..5782842) Sugiyamaella lignohabitans 30033768 AWJ20_1915 CDS URE2 NC_031672.1 5793395 5794366 D Nitrogen catabolite repression transcriptional regulator; acts by inhibition of GLN3 transcription in good nitrogen source; has glutathione peroxidase activity and can mutate to acquire GST activity; altered form creates [URE3] prion; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10748041]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IEA]; GO_function: GO:0004602 - glutathione peroxidase activity [Evidence IDA] [PMID 15371425]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0051219 - phosphoprotein binding [Evidence IDA] [PMID 10604478]; GO_function: GO:0003714 - transcription corepressor activity [Evidence IGI,IPI] [PMID 8755910]; GO_process: GO:0042994 - cytoplasmic sequestering of transcription factor [Evidence IMP] [PMID 10748041]; GO_process: GO:0042128 - nitrate assimilation [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IMP] [PMID 14551258]; GO_process: GO:0006808 - regulation of nitrogen utilization [Evidence IEA]; GO_process: GO:0006808 - regulation of nitrogen utilization [Evidence IMP] [PMID 8002570]; GO_process: GO:0006808 - regulation of nitrogen utilization [Evidence IGI,IPI] [PMID 8755910]; GO_process: GO:0010044 - response to aluminum ion [Evidence IMP] [PMID 15133656]; Ure2p 5793395..5794366 Sugiyamaella lignohabitans 30033769 AWJ20_1916 CDS ALD5 NC_031672.1 5797688 5799178 D Mitochondrial aldehyde dehydrogenase; involved in regulation or biosynthesis of electron transport chain components and acetate formation; activated by K+; utilizes NADP+ as the preferred coenzyme; constitutively expressed; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IMP] [PMID 15256563]; GO_process: GO:0006068 - ethanol catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldehyde dehydrogenase (NAD(P)(+)) ALD5 5797688..5799178 Sugiyamaella lignohabitans 30033770 AWJ20_1917 CDS AWJ20_1917 NC_031672.1 5799398 5800348 R uncharacterized protein complement(5799398..5800348) Sugiyamaella lignohabitans 30033771 AWJ20_1918 CDS GCS1 NC_031672.1 5801249 5802325 R ADP-ribosylation factor GTPase activating protein (ARF GAP); involved in ER-Golgi transport; required for prospore membrane formation; regulates phospholipase Spo14p; shares functional similarity with Glo3p; GCS1 has a paralog, SPS18, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IMP,IPI] [PMID 10069805]; GO_component: GO:0005793 - endoplasmic reticulum-Golgi intermediate compartment [Evidence IPI] [PMID 9927415]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 16452633]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16452633]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IEA]; GO_function: GO:0008060 - ARF GTPase activator activity [Evidence IDA,ISS] [PMID 8816753]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IDA] [PMID 15975906]; GO_function: GO:0003779 - actin binding [Evidence IDA] [PMID 10069805]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 9927415]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 16926193]; GO_process: GO:0030037 - actin filament reorganization involved in cell cycle [Evidence IGI,IMP,IPI] [PMID 10069805]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA,IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0032312 - regulation of ARF GTPase activity [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IDA,IGI,IMP] [PMID 9927415]; GO_process: GO:0006810 - transport [Evidence IEA]; Gcs1p complement(5801249..5802325) Sugiyamaella lignohabitans 30033772 AWJ20_1919 CDS PSY2 NC_031672.1 5802876 5804885 R Subunit of protein phosphatase PP4 complex; active complex is composed of catalytic subunit Pph3p and Psy2p, with Psy4p apparently providing additional substrate specificity in some cases; regulates recovery from the DNA damage checkpoint and also the gene conversion- and single-strand annealing-mediated pathways of meiotic double-strand break repair; Pph3p and Psy2p localize to foci on meiotic chromosomes; putative homolog of mammalian R3; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 20951350]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA,IMP] [PMID 16299494]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA] [PMID 17517611]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IDA] [PMID 17517611]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI] [PMID 15598824]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 16299494]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 17517611]; GO_process: GO:1902660 - negative regulation of glucose mediated signaling pathway [Evidence IMP] [PMID 24277933]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 17517611]; GO_process: GO:0072462 - signal transduction involved in meiotic recombination checkpoint [Evidence IMP] [PMID 20951350]; Psy2p complement(5802876..5804885) Sugiyamaella lignohabitans 30033773 AWJ20_1920 CDS PSY2 NC_031672.1 5805250 5806062 R Subunit of protein phosphatase PP4 complex; active complex is composed of catalytic subunit Pph3p and Psy2p, with Psy4p apparently providing additional substrate specificity in some cases; regulates recovery from the DNA damage checkpoint and also the gene conversion- and single-strand annealing-mediated pathways of meiotic double-strand break repair; Pph3p and Psy2p localize to foci on meiotic chromosomes; putative homolog of mammalian R3; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 20951350]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA,IMP] [PMID 16299494]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA] [PMID 17517611]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IDA] [PMID 17517611]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI] [PMID 15598824]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 16299494]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 17517611]; GO_process: GO:1902660 - negative regulation of glucose mediated signaling pathway [Evidence IMP] [PMID 24277933]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 17517611]; GO_process: GO:0072462 - signal transduction involved in meiotic recombination checkpoint [Evidence IMP] [PMID 20951350]; Psy2p complement(5805250..5806062) Sugiyamaella lignohabitans 30033775 AWJ20_1921 CDS SWC3 NC_031672.1 5809247 5812057 R hypothetical protein; component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; required for formation of nuclear-associated array of smooth endoplasmic reticulum known as karmellae; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI,IMP] [PMID 14690608]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IMP] [PMID 12868057]; GO_process: GO:0043486 - histone exchange [Evidence IPI] [PMID 16299513]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Swc3p complement(5809247..5812057) Sugiyamaella lignohabitans 30033776 AWJ20_1922 CDS PRD1 NC_031672.1 5812413 5814719 R Zinc metalloendopeptidase; found in the cytoplasm and intermembrane space of mitochondria; with Cym1p, involved in degradation of mitochondrial proteins and of presequence peptides cleaved from imported proteins; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8307027]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 8307027]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA,IMP,ISS] [PMID 8307027]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IDA,IMP] [PMID 8307027]; Prd1p complement(5812413..5814719) Sugiyamaella lignohabitans 30033777 AWJ20_1923 CDS KGD2 NC_031672.1 5815395 5816897 D Dihydrolipoyl transsuccinylase; component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes the oxidative decarboxylation of alpha-ketoglutarate to succinyl-CoA in the TCA cycle; phosphorylated; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 11926067]; GO_component: GO:0009353 - mitochondrial oxoglutarate dehydrogenase complex [Evidence IDA] [PMID 2072900]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045252 - oxoglutarate dehydrogenase complex [Evidence IEA]; GO_function: GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence ISA] [PMID 2115121]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0006103 - 2-oxoglutarate metabolic process [Evidence IMP] [PMID 2115121]; GO_process: GO:0033512 - L-lysine catabolic process to acetyl-CoA via saccharopine [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 10869431]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IC] [PMID 2072900]; alpha-ketoglutarate dehydrogenase KGD2 5815395..5816897 Sugiyamaella lignohabitans 30033778 AWJ20_1924 CDS AWJ20_1924 NC_031672.1 5819370 5820581 D uncharacterized protein 5819370..5820581 Sugiyamaella lignohabitans 30033779 AWJ20_1925 CDS ENO1 NC_031672.1 5819604 5821904 R Enolase I, a phosphopyruvate hydratase; catalyzes conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression repressed in response to glucose; protein abundance increases in response to DNA replication stress; N-terminally propionylated in vivo; ENO1 has a paralog, ENO2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 16565073]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0000015 - phosphopyruvate hydratase complex [Evidence IEA]; GO_component: GO:0000015 - phosphopyruvate hydratase complex [Evidence IDA] [PMID 6282834]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA,IEA]; GO_function: GO:0004634 - phosphopyruvate hydratase activity [Evidence IMP] [PMID 6282834]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEP] [PMID 3313003]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 6282834]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IDA,IMP] [PMID 16565073]; phosphopyruvate hydratase ENO1 complement(join(5819604..5820880,5821859..5821904)) Sugiyamaella lignohabitans 30033780 AWJ20_1926 CDS AWJ20_1926 NC_031672.1 5824427 5826055 R uncharacterized protein complement(5824427..5826055) Sugiyamaella lignohabitans 30033781 AWJ20_1927 CDS AWJ20_1927 NC_031672.1 5829019 5829753 D uncharacterized protein 5829019..5829753 Sugiyamaella lignohabitans 30033782 AWJ20_1928 CDS RPO41 NC_031672.1 5829825 5833259 D similar to Saccharomyces cerevisiae S288c NP_116617.1; Rpo41p 5829825..5833259 Sugiyamaella lignohabitans 30033783 AWJ20_1929 CDS SOK1 NC_031672.1 5837003 5839306 R hypothetical protein; overexpression suppresses the growth defect of mutants lacking protein kinase A activity; involved in cAMP-mediated signaling; localized to the nucleus; similar to the mouse testis-specific protein PBS13; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8065298]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0019933 - cAMP-mediated signaling [Evidence IGI] [PMID 8065298]; Sok1p complement(5837003..5839306) Sugiyamaella lignohabitans 30033784 AWJ20_1930 CDS AUR1 NC_031672.1 5850781 5852403 D Phosphatidylinositol:ceramide phosphoinositol transferase; required for sphingolipid synthesis; can mutate to confer aureobasidin A resistance; also known as IPC synthase; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 10888667]; GO_component: GO:0032580 - Golgi cisterna membrane [Evidence IEA]; GO_component: GO:0070916 - inositol phosphoceramide synthase complex [Evidence IPI] [PMID 19726565]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0045140 - inositol phosphoceramide synthase activity [Evidence IDA] [PMID 19047657]; GO_function: GO:0045140 - inositol phosphoceramide synthase activity [Evidence IMP] [PMID 9092515]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006673 - inositolphosphoceramide metabolic process [Evidence IDA] [PMID 19726565]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IMP] [PMID 9092515]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; inositol phosphorylceramide synthase 5850781..5852403 Sugiyamaella lignohabitans 30033786 AWJ20_1931 CDS YIA6 NC_031672.1 5854683 5855759 D Mitochondrial NAD+ transporter; involved in the transport of NAD+ into the mitochondria (see also YEA6); member of the mitochondrial carrier subfamily; disputed role as a pyruvate transporter; has putative mouse and human orthologs; YIA6 has a paralog, YEA6, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16291748]; GO_function: GO:0051724 - NAD transporter activity [Evidence IDA,IGI,IMP] [PMID 16291748]; GO_function: GO:0005477 - pyruvate secondary active transmembrane transporter activity [Evidence IMP] [PMID 12887330]; GO_function: GO:0005477 - pyruvate secondary active transmembrane transporter activity [Evidence IDA] [PMID 16291748]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 10930523]; GO_process: GO:0035352 - NAD transmembrane transport [Evidence IDA,IGI,IMP] [PMID 16291748]; GO_process: GO:0006850 - mitochondrial pyruvate transport [Evidence IMP] [PMID 12887330]; GO_process: GO:0006850 - mitochondrial pyruvate transport [Evidence IDA] [PMID 16291748]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 10930523]; Yia6p 5854683..5855759 Sugiyamaella lignohabitans 30033787 AWJ20_1932 CDS AWJ20_1932 NC_031672.1 5855955 5859293 R EFW99297|beta-galactosidase [Grosmannia clavigera kw1407]; beta-galactosidase complement(5855955..5859293) Sugiyamaella lignohabitans 30033788 AWJ20_1933 CDS PUT3 NC_031672.1 5860199 5862886 D Transcriptional activator; binds specific gene recruitment sequences and is required for DNA zip code-mediated targeting of genes to nuclear periphery; regulates proline utilization genes, constitutively binds PUT1 and PUT2 promoters as a dimer, undergoes conformational change to form active state; binds other promoters only under activating conditions; differentially phosphorylated in presence of different nitrogen sources; has a Zn(2)-Cys(6) binuclear cluster domain; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 1986247]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 1986247]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 8846888]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 8846888]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:2001158 - positive regulation of proline catabolic process to glutamate [Evidence IMP] [PMID 2689862]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 2689862]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8846888]; GO_process: GO:0006560 - proline metabolic process [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 22579222]; Put3p 5860199..5862886 Sugiyamaella lignohabitans 30033789 AWJ20_1934 CDS AWJ20_1934 NC_031672.1 5863207 5864475 R uncharacterized protein complement(5863207..5864475) Sugiyamaella lignohabitans 30033790 AWJ20_1935 CDS YAP1801 NC_031672.1 5868142 5870028 R Protein of the AP180 family, involved in clathrin cage assembly; binds Pan1p and clathrin; YAP1801 has a paralog, YAP1802, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence TAS] [PMID 10652251]; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0030118 - clathrin coat [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence TAS] [PMID 12461563]; GO_function: GO:0005543 - phospholipid binding [Evidence IEA]; GO_process: GO:0048268 - clathrin coat assembly [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IPI,ISS] [PMID 9531549]; Yap1801p complement(5868142..5870028) Sugiyamaella lignohabitans 30033791 AWJ20_1936 CDS AWJ20_1936 NC_031672.1 5871670 5873367 D Sucrose transport protein SUC5 5871670..5873367 Sugiyamaella lignohabitans 30033792 AWJ20_1937 CDS PUT2 NC_031672.1 5873763 5875484 D Delta-1-pyrroline-5-carboxylate dehydrogenase; nuclear-encoded mitochondrial protein involved in utilization of proline as sole nitrogen source; deficiency of the human homolog causes HPII, an autosomal recessive inborn error of metabolism; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 3025596]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]; GO_function: GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IMP] [PMID 387737]; GO_function: GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IDA] [PMID 4145181]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IDA] [PMID 4145181]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IEA]; GO_process: GO:0010133 - proline catabolic process to glutamate [Evidence IEA]; GO_process: GO:0010133 - proline catabolic process to glutamate [Evidence IMP] [PMID 387737]; GO_process: GO:0006560 - proline metabolic process [Evidence IEA]; 1-pyrroline-5-carboxylate dehydrogenase 5873763..5875484 Sugiyamaella lignohabitans 30033793 AWJ20_1938 CDS AWJ20_1938 NC_031672.1 5876488 5877531 D uncharacterized protein 5876488..5877531 Sugiyamaella lignohabitans 30033794 AWJ20_1939 CDS CGT1 NC_031672.1 5877677 5879152 R allele of CaO19.12061; ceramide glucosyltransferase complement(5877677..5879152) Sugiyamaella lignohabitans 30033795 AWJ20_1940 CDS RLP24 NC_031672.1 5880998 5881534 D Essential protein required for ribosomal large subunit biogenesis; associated with pre-60S ribosomal subunits; stimulates the ATPase activity of Afg2p, which is required for release of Rlp24p from the pre-60S particle; has similarity to Rpl24Ap and Rpl24Bp; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 20670889]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 23185031]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rlp24p 5880998..5881534 Sugiyamaella lignohabitans 30033797 AWJ20_1941 CDS RBG2 NC_031672.1 5883868 5884974 R Protein with a role in translation; forms a complex with Gir2p; has similarity to mammalian developmentally regulated GTP-binding protein; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISS] [PMID 10760581]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI] [PMID 21076151]; Rbg2p complement(5883868..5884974) Sugiyamaella lignohabitans 30033798 AWJ20_1942 CDS CRC1 NC_031672.1 5886791 5887702 D Mitochondrial inner membrane carnitine transporter; required for carnitine-dependent transport of acetyl-CoA from peroxisomes to mitochondria during fatty acid beta-oxidation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10545096]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005476 - carnitine:acyl carnitine antiporter activity [Evidence IDA] [PMID 10545096]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IDA] [PMID 10545096]; GO_process: GO:0006810 - transport [Evidence IEA]; Crc1p 5886791..5887702 Sugiyamaella lignohabitans 30033799 AWJ20_1943 CDS SPC98 NC_031672.1 5887886 5890372 R Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0000928 - gamma-tubulin small complex, spindle pole body [Evidence IPI] [PMID 9384578]; GO_component: GO:0005822 - inner plaque of spindle pole body [Evidence IDA] [PMID 9215630]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005815 - microtubule organizing center [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005824 - outer plaque of spindle pole body [Evidence IDA] [PMID 9215630]; GO_component: GO:0000922 - spindle pole [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9215630]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IEA]; GO_process: GO:0007020 - microtubule nucleation [Evidence IEA]; GO_process: GO:0007020 - microtubule nucleation [Evidence IPI] [PMID 9153752]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IMP] [PMID 9153752]; Spc98p complement(5887886..5890372) Sugiyamaella lignohabitans 30033800 AWJ20_1944 CDS YIP3 NC_031672.1 5891591 5891821 D Protein localized to COPII vesicles; proposed to be involved in ER to Golgi transport; interacts with members of the Rab GTPase family and Yip1p; also interacts with Rtn1p; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 16002643]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16002643]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; Yip3p 5891591..5891821 Sugiyamaella lignohabitans 30033801 AWJ20_1945 CDS YAR1 NC_031672.1 5894409 5896106 R potential ankyrin repeats near N terminus similar to S. cerevisiae YCR051W; allele of CaO19.2256; putative ankyrin repeat protein complement(5894409..5896106) Sugiyamaella lignohabitans 30033802 AWJ20_1946 CDS AWJ20_1946 NC_031672.1 5896135 5899632 R uncharacterized protein complement(5896135..5899632) Sugiyamaella lignohabitans 30033803 AWJ20_1947 CDS cbh2 NC_031672.1 5903038 5905944 D CENP-B protein 2 5903038..5905944 Sugiyamaella lignohabitans 30033804 AWJ20_1948 CDS ILV1 NC_031672.1 5906486 5908069 D Threonine deaminase, catalyzes first step in isoleucine biosynthesis; expression is under general amino acid control; ILV1 locus exhibits highly positioned nucleosomes whose organization is independent of known ILV1 regulation; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA,IEA]; GO_function: GO:0004794 - L-threonine ammonia-lyase activity [Evidence IMP] [PMID 5345980]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IMP] [PMID 5345980]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006567 - threonine catabolic process [Evidence IGI] [PMID 7042346]; threonine ammonia-lyase ILV1 5906486..5908069 Sugiyamaella lignohabitans 30033805 AWJ20_1949 CDS BNA3 NC_031672.1 5908486 5909649 D Kynurenine aminotransferase; catalyzes formation of kynurenic acid from kynurenine; potential Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17034789]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17034789]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IDA] [PMID 19342587]; GO_function: GO:0004061 - arylformamidase activity [Evidence IDA] [PMID 18205391]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016212 - kynurenine-oxoglutarate transaminase activity [Evidence IEA]; GO_function: GO:0016212 - kynurenine-oxoglutarate transaminase activity [Evidence IDA,ISS] [PMID 18205391]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0097053 - L-kynurenine catabolic process [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0034276 - kynurenic acid biosynthetic process [Evidence IDA,ISS] [PMID 18205391]; Bna3p 5908486..5909649 Sugiyamaella lignohabitans 30033806 AWJ20_1950 CDS FMP25 NC_031672.1 5909809 5911410 R Protein required for assembly of respiratory complex III; mitochondrial inner membrane protein; required for an early step in assembly of respiratory complex III (cytochrome bc1 complex); mRNA is targeted to mitochondria; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 21168530]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 21168530]; Fmp25p complement(5909809..5911410) Sugiyamaella lignohabitans 30033808 AWJ20_1951 CDS FMP32 NC_031672.1 5911744 5912388 D hypothetical protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 12514182]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fmp32p 5911744..5912388 Sugiyamaella lignohabitans 30033809 AWJ20_1952 CDS SEC53 NC_031672.1 5912567 5913337 R Phosphomannomutase; involved in synthesis of GDP-mannose and dolichol-phosphate-mannose; required for folding and glycosylation of secretory proteins in the ER lumen; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 3905826]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004615 - phosphomannomutase activity [Evidence IEA,IEA]; GO_function: GO:0004615 - phosphomannomutase activity [Evidence IDA] [PMID 3288631]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IEA]; GO_process: GO:0019307 - mannose biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 6368572]; phosphomannomutase SEC53 complement(5912567..5913337) Sugiyamaella lignohabitans 30033810 AWJ20_1953 CDS AWJ20_1953 NC_031672.1 5915103 5915543 D uncharacterized protein 5915103..5915543 Sugiyamaella lignohabitans 30033811 AWJ20_1954 CDS RPS14A NC_031672.1 5915121 5915399 R Protein component of the small (40S) ribosomal subunit; required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; homologous to mammalian ribosomal protein S14 and bacterial S11; RPS14A has a paralog, RPS14B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 9858605]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15125836]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 16246728]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 2277060]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 8293976]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S14A complement(5915121..5915399) Sugiyamaella lignohabitans 30033812 AWJ20_1955 CDS AWJ20_1955 NC_031672.1 5916765 5917469 D uncharacterized protein 5916765..5917469 Sugiyamaella lignohabitans 30033813 AWJ20_1956 CDS AWJ20_1956 NC_031672.1 5917643 5918146 D uncharacterized protein 5917643..5918146 Sugiyamaella lignohabitans 30033814 AWJ20_1957 CDS LEU2 NC_031672.1 5918220 5919467 R Beta-isopropylmalate dehydrogenase (IMDH); catalyzes the third step in the leucine biosynthesis pathway; can additionally catalyze the conversion of beta-ethylmalate into alpha-ketovalerate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 4355481]; GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IDA] [PMID 3071718]; GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IMP] [PMID 6297759]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IMP] [PMID 23642236]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IMP] [PMID 6297759]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; 3-isopropylmalate dehydrogenase complement(5918220..5919467) Sugiyamaella lignohabitans 30033815 AWJ20_1958 CDS SPS19 NC_031672.1 5919652 5920410 D Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 5919652..5920410 Sugiyamaella lignohabitans 30033816 AWJ20_1959 CDS AWJ20_1959 NC_031672.1 5921462 5922946 D uncharacterized protein 5921462..5922946 Sugiyamaella lignohabitans 30033817 AWJ20_1960 CDS ICP55 NC_031672.1 5923161 5924558 R Mitochondrial aminopeptidase; cleaves the N termini of at least 38 imported proteins after cleavage by the mitochondrial processing peptidase (MPP), thereby increasing their stability; member of the aminopeptidase P family; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 19837041]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19720832]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19720832]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IDA,IMP] [PMID 19720832]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IMP] [PMID 19837041]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 19720832]; GO_process: GO:0016485 - protein processing [Evidence IGI,IMP] [PMID 19837041]; GO_process: GO:0050821 - protein stabilization [Evidence IMP] [PMID 19837041]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; Icp55p complement(5923161..5924558) Sugiyamaella lignohabitans 30033819 AWJ20_1961 CDS FCY2 NC_031672.1 5926676 5928196 D Purine-cytosine permease; mediates purine (adenine, guanine, and hypoxanthine) and cytosine accumulation; relative distribution to the vacuole increases upon DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8267570]; GO_function: GO:0015212 - cytidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 10501935]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IDA] [PMID 9092500]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015861 - cytidine transport [Evidence IDA,IMP] [PMID 10501935]; GO_process: GO:0015856 - cytosine transport [Evidence IDA] [PMID 9092500]; GO_process: GO:0015851 - nucleobase transport [Evidence IEA]; GO_process: GO:0072530 - purine-containing compound transmembrane transport [Evidence IDA] [PMID 9092500]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Fcy2p 5926676..5928196 Sugiyamaella lignohabitans 30033820 AWJ20_1962 CDS SDO1 NC_031674.1 2139 2819 D guanine nucleotide exchange factor SDO1 2139..2819 Sugiyamaella lignohabitans 30033821 AWJ20_1963 CDS AWJ20_1963 NC_031674.1 2859 3389 R uncharacterized protein complement(2859..3389) Sugiyamaella lignohabitans 30033822 AWJ20_1964 CDS AWJ20_1964 NC_031674.1 4700 5089 R uncharacterized protein complement(4700..5089) Sugiyamaella lignohabitans 30033823 AWJ20_1965 CDS MSS4 NC_031674.1 5690 9004 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(5690..9004) Sugiyamaella lignohabitans 30033824 AWJ20_1966 CDS AWJ20_1966 NC_031674.1 11084 13663 R uncharacterized protein complement(11084..13663) Sugiyamaella lignohabitans 30033825 AWJ20_1967 CDS AWJ20_1967 NC_031674.1 15080 16726 D uncharacterized protein 15080..16726 Sugiyamaella lignohabitans 30033826 AWJ20_1968 CDS NAM8 NC_031674.1 19208 20860 D RNA binding protein, component of the U1 snRNP protein; mutants are defective in meiotic recombination and in formation of viable spores, involved in the formation of DSBs through meiosis-specific splicing of REC107 pre-mRNA; Nam8p regulon embraces the meiotic pre-mRNAs of REC107, HFM1, AMA1 SPO22 and PCH2; the putative RNA binding domains RRM2 and RRM3 are required for Nam8p meiotic function; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0000243 - commitment complex [Evidence IPI] [PMID 10072386]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23222640]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IPI] [PMID 10072385]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 10072386]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006376 - mRNA splice site selection [Evidence IMP] [PMID 10072385]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10072386]; GO_process: GO:0048026 - positive regulation of mRNA splicing, via spliceosome [Evidence IMP] [PMID 10983980]; Nam8p 19208..20860 Sugiyamaella lignohabitans 30033827 AWJ20_1969 CDS SWR1 NC_031674.1 23364 27506 D chromatin-remodeling protein SWR1 23364..27506 Sugiyamaella lignohabitans 30033828 AWJ20_1970 CDS PDE2 NC_031674.1 31192 33165 D High-affinity cyclic AMP phosphodiesterase; component of the cAMP-dependent protein kinase signaling system, protects the cell from extracellular cAMP, contains readthrough motif surrounding termination codon; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004115 - 3',5'-cyclic-AMP phosphodiesterase activity [Evidence IDA] [PMID 3025832]; GO_function: GO:0004114 - 3',5'-cyclic-nucleotide phosphodiesterase activity [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0019933 - cAMP-mediated signaling [Evidence IMP] [PMID 8391474]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; 3',5'-cyclic-nucleotide phosphodiesterase PDE2 31192..33165 Sugiyamaella lignohabitans 30033830 AWJ20_1971 CDS VTS1 NC_031674.1 33355 35247 R Flap-structured DNA-binding and RNA-binding protein; stimulates deadenylation-dependent mRNA degradation mediated by the CCR4-NOT deadenylase complex; member of the Smaug (Smg) family of post-transcriptional regulators which bind RNA through a conserved sterile alpha motif (SAM) domain that interacts with Smg recognition element (SREs) containing transcripts; stimulates Dna2p endonuclease activity; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 18469165]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11445562]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 20007605]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12858164]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 16429156]; GO_function: GO:0070336 - flap-structured DNA binding [Evidence IDA] [PMID 20007605]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 12858164]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 16429156]; GO_process: GO:0000289 - nuclear-transcribed mRNA poly(A) tail shortening [Evidence IMP,IPI] [PMID 18469165]; GO_process: GO:0032079 - positive regulation of endodeoxyribonuclease activity [Evidence IDA,IPI] [PMID 20007605]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vts1p complement(33355..35247) Sugiyamaella lignohabitans 30033831 AWJ20_1972 CDS RTT106 NC_031674.1 37188 37670 R Histone chaperone; involved in regulation of chromatin structure in both transcribed and silenced chromosomal regions; affects transcriptional elongation; has a role in regulation of Ty1 transposition; interacts physically and functionally with Chromatin Assembly Factor-1 (CAF-1); GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA,IMP] [PMID 20007951]; GO_function: GO:0042393 - histone binding [Evidence IDA,IPI] [PMID 16157874]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 18662540]; GO_function: GO:0042393 - histone binding [Evidence IDA,IMP] [PMID 20007951]; GO_process: GO:0006335 - DNA replication-dependent nucleosome assembly [Evidence IGI] [PMID 18662540]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IMP] [PMID 18708354]; GO_process: GO:0070869 - heterochromatin assembly involved in chromatin silencing [Evidence IGI,IMP] [PMID 17410207]; GO_process: GO:0070869 - heterochromatin assembly involved in chromatin silencing [Evidence IGI] [PMID 20007951]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 19683497]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 18708354]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; Rtt106p complement(37188..37670) Sugiyamaella lignohabitans 30033832 AWJ20_1973 CDS GLC7 NC_031674.1 41941 42411 R Type 1 serine/threonine protein phosphatase catalytic subunit; cleavage and polyadenylation factor (CPF) component; involved in various processes including glycogen metabolism, sporulation, mitosis; accumulates at mating projections by interaction with Afr1p; interacts with many regulatory subunits; involved in regulation of the nucleocytoplasmic shuttling of Hxk2p; import into nucleus is inhibited during spindle assembly checkpoint arrest; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11412094]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 19948764]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 10747092]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11412094]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23418575]; GO_component: GO:0000164 - protein phosphatase type 1 complex [Evidence IDA] [PMID 8289829]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 10747092]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 1660885]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 19884341]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IGI,IMP] [PMID 19884341]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 9584086]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007114 - cell budding [Evidence IMP] [PMID 10639337]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 11973298]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 10072383]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 24413056]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IEA]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IMP] [PMID 1660885]; GO_process: GO:0016576 - histone dephosphorylation [Evidence IMP] [PMID 10975519]; GO_process: GO:0016576 - histone dephosphorylation [Evidence IDA,IMP] [PMID 19884341]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IPI] [PMID 8754819]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IMP] [PMID 10072380]; GO_process: GO:0035307 - positive regulation of protein dephosphorylation [Evidence IMP] [PMID 23418575]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 1660885]; GO_process: GO:0034501 - protein localization to kinetochore [Evidence IMP] [PMID 19948764]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0006109 - regulation of carbohydrate metabolic process [Evidence IGI,IPI] [PMID 12167649]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 10072380]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 7891699]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 8164671]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 9584086]; GO_process: GO:0000903 - regulation of cell shape during vegetative growth phase [Evidence IGI] [PMID 12477789]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IMP] [PMID 23418575]; GO_process: GO:0031297 - replication fork processing [Evidence IMP] [PMID 19884341]; GO_process: GO:0009408 - response to heat [Evidence IMP,IPI] [PMID 10207049]; GO_process: GO:0030847 - termination of RNA polymerase II transcription, exosome-dependent [Evidence IPI] [PMID 12819204]; GO_process: GO:0030846 - termination of RNA polymerase II transcription, poly(A)-coupled [Evidence IPI] [PMID 12819204]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; type 1 serine/threonine-protein phosphatase catalytic subunit GLC7 complement(41941..42411) Sugiyamaella lignohabitans 30033833 AWJ20_1974 CDS GLC7 NC_031674.1 44647 45621 R Type 1 serine/threonine protein phosphatase catalytic subunit; cleavage and polyadenylation factor (CPF) component; involved in various processes including glycogen metabolism, sporulation, mitosis; accumulates at mating projections by interaction with Afr1p; interacts with many regulatory subunits; involved in regulation of the nucleocytoplasmic shuttling of Hxk2p; import into nucleus is inhibited during spindle assembly checkpoint arrest; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11412094]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 19948764]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 10747092]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11412094]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23418575]; GO_component: GO:0000164 - protein phosphatase type 1 complex [Evidence IDA] [PMID 8289829]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 10747092]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 1660885]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 19884341]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IGI,IMP] [PMID 19884341]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 9584086]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007114 - cell budding [Evidence IMP] [PMID 10639337]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 11973298]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 10072383]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 24413056]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IEA]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IMP] [PMID 1660885]; GO_process: GO:0016576 - histone dephosphorylation [Evidence IMP] [PMID 10975519]; GO_process: GO:0016576 - histone dephosphorylation [Evidence IDA,IMP] [PMID 19884341]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IPI] [PMID 8754819]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IMP] [PMID 10072380]; GO_process: GO:0035307 - positive regulation of protein dephosphorylation [Evidence IMP] [PMID 23418575]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 1660885]; GO_process: GO:0034501 - protein localization to kinetochore [Evidence IMP] [PMID 19948764]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0006109 - regulation of carbohydrate metabolic process [Evidence IGI,IPI] [PMID 12167649]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 10072380]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 7891699]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 8164671]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 9584086]; GO_process: GO:0000903 - regulation of cell shape during vegetative growth phase [Evidence IGI] [PMID 12477789]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IMP] [PMID 23418575]; GO_process: GO:0031297 - replication fork processing [Evidence IMP] [PMID 19884341]; GO_process: GO:0009408 - response to heat [Evidence IMP,IPI] [PMID 10207049]; GO_process: GO:0030847 - termination of RNA polymerase II transcription, exosome-dependent [Evidence IPI] [PMID 12819204]; GO_process: GO:0030846 - termination of RNA polymerase II transcription, poly(A)-coupled [Evidence IPI] [PMID 12819204]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; type 1 serine/threonine-protein phosphatase catalytic subunit GLC7 complement(44647..45621) Sugiyamaella lignohabitans 30033834 AWJ20_1975 CDS VHR1 NC_031674.1 46504 48150 R Transcriptional activator; required for the vitamin H-responsive element (VHRE) mediated induction of VHT1 (Vitamin H transporter) and BIO5 (biotin biosynthesis intermediate transporter) in response to low biotin concentrations; VHR1 has a paralog, VHR2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16533810]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA] [PMID 16533810]; GO_function: GO:0001133 - sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IDA,IMP] [PMID 21278159]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16533810]; GO_process: GO:0061420 - regulation of transcription from RNA polymerase II promoter in response to biotin starvation [Evidence IMP] [PMID 16533810]; GO_process: GO:0061420 - regulation of transcription from RNA polymerase II promoter in response to biotin starvation [Evidence IMP] [PMID 21278159]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Vhr1p complement(46504..48150) Sugiyamaella lignohabitans 30033835 AWJ20_1976 CDS ENV9 NC_031674.1 49106 50077 D Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p 49106..50077 Sugiyamaella lignohabitans 30033836 AWJ20_1977 CDS DSF2 NC_031674.1 51489 53402 D Deletion suppressor of mpt5 mutation; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Dsf2p 51489..53402 Sugiyamaella lignohabitans 30033837 AWJ20_1978 CDS MZM1 NC_031674.1 53723 53989 R Protein required for assembly of the cytochrome bc(1) complex; acts as a chaperone for Rip1p and facilitates its insertion into the complex at a late stage of assembly; localized to the mitochondrial matrix; null mutant exhibits a respiratory growth defect and reduced mitochondrial zinc levels, which is characteristic of mutations affecting bc(1) complex assembly; member of the LYR protein family; human LYRM7 is a functional ortholog; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 20404342]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0044183 - protein binding involved in protein folding [Evidence IMP,IPI] [PMID 22927643]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 21807901]; Mzm1p complement(53723..53989) Sugiyamaella lignohabitans 30033838 AWJ20_1979 CDS AWJ20_1979 NC_031674.1 54568 56172 D uncharacterized protein 54568..56172 Sugiyamaella lignohabitans 30033839 AWJ20_1980 CDS MEF2 NC_031674.1 57205 59694 R Mitochondrial elongation factor involved in translational elongation; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 19716793]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 21414316]; GO_process: GO:0032543 - mitochondrial translation [Evidence ISS] [PMID 19716793]; GO_process: GO:0051881 - regulation of mitochondrial membrane potential [Evidence IMP] [PMID 21414316]; GO_process: GO:0032790 - ribosome disassembly [Evidence ISS] [PMID 19716793]; GO_process: GO:0006412 - translation [Evidence IEA]; Mef2p complement(57205..59694) Sugiyamaella lignohabitans 30033841 AWJ20_1981 CDS AWJ20_1981 NC_031674.1 60189 61094 D pre-mRNA splicing factor SLU7 60189..61094 Sugiyamaella lignohabitans 30033842 AWJ20_1982 CDS AWJ20_1982 NC_031674.1 63464 65449 D uncharacterized protein 63464..65449 Sugiyamaella lignohabitans 30033843 AWJ20_1983 CDS ARP6 NC_031674.1 65534 66802 R Actin-related protein that binds nucleosomes; a component of the SWR1 complex, which exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11011149]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0031491 - nucleosome binding [Evidence IMP] [PMID 16299513]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI,IMP] [PMID 14690608]; GO_process: GO:0043486 - histone exchange [Evidence IMP] [PMID 16299513]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Arp6p complement(65534..66802) Sugiyamaella lignohabitans 30033844 AWJ20_1984 CDS AWJ20_1984 NC_031674.1 67251 68048 D uncharacterized protein 67251..68048 Sugiyamaella lignohabitans 30033845 AWJ20_1985 CDS SMC4 NC_031674.1 68086 71694 D Subunit of the condensin complex; condensin reorganizes chromosomes during both mitosis and meiosis; forms a subcomplex with Smc2p that has ATP-hydrolyzing and DNA-binding activity, but other condensin subunits are required for chromatin binding; required for tRNA gene clustering at the nucleolus; potential Cdc28p substrate; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IDA] [PMID 10811823]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 12719426]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11864994]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IMP] [PMID 24062159]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IEA]; GO_process: GO:0010032 - meiotic chromosome condensation [Evidence IC] [PMID 10811823]; GO_process: GO:0051307 - meiotic chromosome separation [Evidence IC] [PMID 10811823]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 10811823]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 10811823]; GO_process: GO:0070550 - rDNA condensation [Evidence IMP] [PMID 10811823]; GO_process: GO:0007130 - synaptonemal complex assembly [Evidence IC] [PMID 10811823]; GO_process: GO:0070058 - tRNA gene clustering [Evidence IMP] [PMID 18708579]; condensin subunit SMC4 68086..71694 Sugiyamaella lignohabitans 30033846 AWJ20_1986 CDS COQ5 NC_031674.1 71831 72745 R 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase; involved in ubiquinone (Coenzyme Q) biosynthesis; localizes to the matrix face of the mitochondrial inner membrane in a large complex with other ubiquinone biosynthetic enzymes; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 9083048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0043334 - 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity [Evidence IMP,ISS] [PMID 9083049]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 9083049]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 9083048]; 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase complement(71831..72745) Sugiyamaella lignohabitans 30033847 AWJ20_1987 CDS AWJ20_1987 NC_031674.1 73476 73982 D uncharacterized protein 73476..73982 Sugiyamaella lignohabitans 30033848 AWJ20_1988 CDS AWJ20_1988 NC_031674.1 74203 75435 D uncharacterized protein 74203..75435 Sugiyamaella lignohabitans 30033849 AWJ20_1989 CDS AWJ20_1989 NC_031674.1 75545 77095 R DNA replication protein Dre4 complement(75545..77095) Sugiyamaella lignohabitans 30033850 AWJ20_1990 CDS PRE9 NC_031674.1 77713 78273 D Alpha 3 subunit of the 20S proteasome; the only nonessential 20S subunit; may be replaced by the alpha 4 subunit (Pre6p) under stress conditions to create a more active proteasomal isoform; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0080129 - proteasome core complex assembly [Evidence IMP] [PMID 14739934]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 3 77713..78273 Sugiyamaella lignohabitans 30033852 AWJ20_1991 CDS AWJ20_1991 NC_031674.1 78447 79427 R uncharacterized protein complement(78447..79427) Sugiyamaella lignohabitans 30033853 AWJ20_1992 CDS TAO3 NC_031674.1 80095 87144 R Component of the RAM signaling network; is involved in regulation of Ace2p activity and cellular morphogenesis, interacts with protein kinase Cbk1p and also with Kic1p; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 12972564]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11854408]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12972564]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 12972564]; GO_process: GO:0007114 - cell budding [Evidence IGI,IMP] [PMID 11854408]; GO_process: GO:0000902 - cell morphogenesis [Evidence IGI,IMP] [PMID 11854408]; Tao3p complement(80095..87144) Sugiyamaella lignohabitans 30033854 AWJ20_1993 CDS NOP1 NC_031674.1 90163 91146 R Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus; component of the small subunit processome complex, which is required for processing of pre-18S rRNA; ortholog of mammalian fibrillarin; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 11081632]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11932453]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 2686980]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:1990259 - histone-glutamine methyltransferase activity [Evidence IMP] [PMID 24352239]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008649 - rRNA methyltransferase activity [Evidence IDA,IMP] [PMID 12215523]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000494 - box C/D snoRNA 3'-end processing [Evidence IMP] [PMID 10733567]; GO_process: GO:0000494 - box C/D snoRNA 3'-end processing [Evidence IMP] [PMID 15167896]; GO_process: GO:1990258 - histone glutamine methylation [Evidence IDA,IMP] [PMID 24352239]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IDA,IMP] [PMID 12215523]; GO_process: GO:0031167 - rRNA methylation [Evidence IMP] [PMID 8431947]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 1825809]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0043144 - snoRNA processing [Evidence IMP] [PMID 1825809]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; rRNA methyltransferase NOP1 complement(90163..91146) Sugiyamaella lignohabitans 30033855 AWJ20_1994 CDS RPL17A NC_031674.1 92150 92707 D Ribosomal 60S subunit protein L17A; copurifies with the Dam1 complex (aka DASH complex); homologous to mammalian ribosomal protein L17 and bacterial L22; RPL17A has a paralog, RPL17B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L17A 92150..92707 Sugiyamaella lignohabitans 30033856 AWJ20_1995 CDS COY1 NC_031674.1 93098 95224 R Golgi membrane protein with similarity to mammalian CASP; genetic interactions with GOS1 (encoding a Golgi snare protein) suggest a role in Golgi function; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IGI] [PMID 12429822]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0048193 - Golgi vesicle transport [Evidence IGI] [PMID 12429822]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Coy1p complement(93098..95224) Sugiyamaella lignohabitans 30033857 AWJ20_1996 CDS FUN26 NC_031674.1 96127 97461 D nucleoside transmembrane transporter FUN26 96127..97461 Sugiyamaella lignohabitans 30033858 AWJ20_1997 CDS AWJ20_1997 NC_031674.1 97544 97846 R uncharacterized protein complement(97544..97846) Sugiyamaella lignohabitans 30033859 AWJ20_1998 CDS RPD3 NC_031674.1 98510 99682 D histone deacetylase RPD3 98510..99682 Sugiyamaella lignohabitans 30033860 AWJ20_1999 CDS BFR1 NC_031674.1 100425 101837 D Component of mRNP complexes associated with polyribosomes; implicated in secretion and nuclear segregation; multicopy suppressor of BFA (Brefeldin A) sensitivity; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23222640]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 11410665]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 11410665]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IDA] [PMID 11410665]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 11410665]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0016071 - mRNA metabolic process [Evidence IPI] [PMID 11410665]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 8913743]; GO_process: GO:0007088 - regulation of mitosis [Evidence IMP] [PMID 8913743]; Bfr1p 100425..101837 Sugiyamaella lignohabitans 30033861 AWJ20_2000 CDS FEN2 NC_031674.1 101977 103020 R Plasma membrane H+-pantothenate symporter; confers sensitivity to the antifungal agent fenpropimorph; relocalizes from vacuole to cytoplasm upon DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IGI,ISS] [PMID 10373490]; GO_function: GO:0015233 - pantothenate transmembrane transporter activity [Evidence IGI,IMP] [PMID 10373490]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 15020461]; GO_process: GO:0015887 - pantothenate transmembrane transport [Evidence IGI,IMP] [PMID 10373490]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Fen2p complement(101977..103020) Sugiyamaella lignohabitans 30033865 AWJ20_2001 CDS AWJ20_2001 NC_031674.1 104711 107242 D uncharacterized protein 104711..107242 Sugiyamaella lignohabitans 30033866 AWJ20_2002 CDS PET309 NC_031674.1 109047 112073 D Specific translational activator for the COX1 mRNA; also influences stability of intron-containing COX1 primary transcripts; localizes to the mitochondrial inner membrane; contains seven pentatricopeptide repeats (PPRs); GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 18039654]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 9692914]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9692914]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0045182 - translation regulator activity [Evidence IGI] [PMID 7664742]; GO_process: GO:0016070 - RNA metabolic process [Evidence IMP] [PMID 7664742]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 7664742]; GO_process: GO:0097034 - mitochondrial respiratory chain complex IV biogenesis [Evidence IMP] [PMID 7664742]; GO_process: GO:0070134 - positive regulation of mitochondrial translational initiation [Evidence IMP] [PMID 18039654]; GO_process: GO:0070134 - positive regulation of mitochondrial translational initiation [Evidence IMP] [PMID 7664742]; Pet309p 109047..112073 Sugiyamaella lignohabitans 30033867 AWJ20_2003 CDS SPC3 NC_031674.1 112221 112631 R Subunit of signal peptidase complex; complex catalyzes cleavage of N-terminal signal sequences of proteins targeted to the secretory pathway; homologous to mammalian SPC22/23; other members of the complex are Spc1p, Spc2p, and Sec11p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005787 - signal peptidase complex [Evidence IEA]; GO_component: GO:0005787 - signal peptidase complex [Evidence IDA] [PMID 1846444]; GO_component: GO:0005787 - signal peptidase complex [Evidence IDA] [PMID 8910564]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IMP] [PMID 9148930]; GO_function: GO:0008233 - peptidase activity [Evidence IMP] [PMID 9148931]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 9148931]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006465 - signal peptide processing [Evidence IEA]; GO_process: GO:0006465 - signal peptide processing [Evidence IMP] [PMID 9148930]; GO_process: GO:0006465 - signal peptide processing [Evidence IDA,IMP] [PMID 9148931]; Spc3p complement(112221..112631) Sugiyamaella lignohabitans 30033868 AWJ20_2004 CDS UGA2 NC_031674.1 115250 116755 D Succinate semialdehyde dehydrogenase; involved in the utilization of gamma-aminobutyrate (GABA) as a nitrogen source; part of the 4-aminobutyrate and glutamate degradation pathways; localized to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IEA,IEA]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IMP,ISS] [PMID 11031268]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IMP] [PMID 3888627]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11031268]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEA,IEA]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEP,IMP,ISS] [PMID 11031268]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 3888627]; GO_process: GO:0006540 - glutamate decarboxylation to succinate [Evidence IGI,IMP,ISS] [PMID 11031268]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; succinate-semialdehyde dehydrogenase (NAD(P)(+)) 115250..116755 Sugiyamaella lignohabitans 30033869 AWJ20_2005 CDS AWJ20_2005 NC_031674.1 115696 116136 R uncharacterized protein complement(115696..116136) Sugiyamaella lignohabitans 30033870 AWJ20_2006 CDS AWJ20_2006 NC_031674.1 116820 118130 R uncharacterized protein complement(116820..118130) Sugiyamaella lignohabitans 30033871 AWJ20_2007 CDS RAD57 NC_031674.1 118446 119633 D putative DNA-dependent ATPase RAD57 118446..119633 Sugiyamaella lignohabitans 30033872 AWJ20_2008 CDS MCM2 NC_031674.1 119897 122404 D Protein involved in DNA replication; component of the Mcm2-7 hexameric helicase complex that binds chromatin as a part of the pre-replicative complex; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10704410]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704410]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10783164]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IMP] [PMID 17895243]; GO_function: GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 22564307]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:1902450 - negative regulation of ATP-dependent DNA helicase activity [Evidence IDA] [PMID 13679365]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IPI] [PMID 9335335]; MCM DNA helicase complex subunit MCM2 119897..122404 Sugiyamaella lignohabitans 30033873 AWJ20_2009 CDS MAF1 NC_031674.1 122694 123470 R RNA polymerase III-inhibiting protein MAF1 complement(122694..123470) Sugiyamaella lignohabitans 30033874 AWJ20_2010 CDS PPH3 NC_031674.1 124618 125844 R Catalytic subunit of protein phosphatase PP4 complex; active complex is composed of Pph3p and Psy2p, with Psy4p apparently providing additional substrate specificity in some cases; regulates recovery from the DNA damage checkpoint and also the gene conversion- and single-strand annealing-mediated pathways of meiotic double-strand break repair; involved in activation of Gln3p to alleviate nitrogen catabolite repression; Pph3p and Psy2p localize to foci on meiotic chromosomes; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 20951350]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA,IMP] [PMID 16299494]; GO_component: GO:0030289 - protein phosphatase 4 complex [Evidence IDA] [PMID 17517611]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA,IMP] [PMID 16299494]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 7941742]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IGI] [PMID 21135129]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 16299494]; GO_process: GO:2000002 - negative regulation of DNA damage checkpoint [Evidence IMP] [PMID 17517611]; GO_process: GO:1902660 - negative regulation of glucose mediated signaling pathway [Evidence IMP] [PMID 24277933]; GO_process: GO:0051173 - positive regulation of nitrogen compound metabolic process [Evidence IMP] [PMID 10940301]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA,IMP] [PMID 16299494]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 7941742]; GO_process: GO:0072462 - signal transduction involved in meiotic recombination checkpoint [Evidence IMP] [PMID 20951350]; phosphoprotein phosphatase PP4 catalytic subunit PPH3 complement(124618..125844) Sugiyamaella lignohabitans 30033876 AWJ20_2011 CDS RSN1 NC_031674.1 129665 132304 D Membrane hypothetical protein; overexpression suppresses NaCl sensitivity of sro7 mutant cells by restoring sodium pump (Ena1p) localization to the plasma membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 17005914]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI] [PMID 17005914]; Rsn1p 129665..132304 Sugiyamaella lignohabitans 30033877 AWJ20_2012 CDS IPP1 NC_031674.1 132768 133616 D Cytoplasmic inorganic pyrophosphatase (PPase); homodimer that catalyzes the rapid exchange of oxygens from Pi with water, highly expressed and essential for viability, active-site residues show identity to those from E. coli PPase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004427 - inorganic diphosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004427 - inorganic diphosphatase activity [Evidence IDA] [PMID 8224193]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IC] [PMID 8224193]; inorganic diphosphatase IPP1 132768..133616 Sugiyamaella lignohabitans 30033878 AWJ20_2013 CDS TRP1 NC_031674.1 134501 136195 R Phosphoribosylanthranilate isomerase; catalyzes the third step in tryptophan biosynthesis; in 2004, the sequence of TRP1 from strain S228C was updated by changing the previously annotated internal STOP (TAA) to serine (TCA); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IDA] [PMID 3286643]; GO_function: GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IMP] [PMID 348687]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 10790693]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IDA] [PMID 3286643]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 348687]; GO_process: GO:0006568 - tryptophan metabolic process [Evidence IEA]; phosphoribosylanthranilate isomerase TRP1 complement(134501..136195) Sugiyamaella lignohabitans 30033879 AWJ20_2014 CDS SUA5 NC_031674.1 137434 138573 D Protein involved in threonylcarbamoyl adenosine biosynthesis; Sua5p and Qri7p are necessary and sufficient for RNA t6A modification in vitro; null mutant lacks N6-threonylcarbamoyl adenosine (t6A) modification in the anticodon loop of ANN-decoding tRNA; member of conserved YrdC/Sua5 family; binds single-stranded telomeric DNA and null mutant has abnormal telomere length; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003725 - double-stranded RNA binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0043047 - single-stranded telomeric DNA binding [Evidence IDA] [PMID 19369944]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IMP] [PMID 19884342]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 19369944]; GO_process: GO:0070526 - threonylcarbamoyladenosine biosynthetic process [Evidence IDA] [PMID 23620299]; GO_process: GO:0070525 - threonylcarbamoyladenosine metabolic process [Evidence IMP] [PMID 19287007]; GO_process: GO:0070525 - threonylcarbamoyladenosine metabolic process [Evidence IMP] [PMID 21183954]; Sua5p 137434..138573 Sugiyamaella lignohabitans 30033880 AWJ20_2015 CDS PMR1 NC_031674.1 138695 141475 R High affinity Ca2+/Mn2+ P-type ATPase; required for Ca2+ and Mn2+ transport into Golgi; involved in Ca2+ dependent protein sorting and processing; D53A mutant (Mn2+ transporting) is rapamycin sensitive, Q783A mutant (Ca2+ transporting) is rapamycin resistant; Mn2+ transport into Golgi lumen appears to be required for rapamycin sensitivity; mutations in human homolog ATP2C1 cause acantholytic skin condition Hailey-Hailey disease; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 24124599]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 9092527]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 10545175]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IEA,IEA]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IDA,IMP] [PMID 10545175]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IMP] [PMID 1379856]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0015410 - manganese-transporting ATPase activity [Evidence IDA] [PMID 10801856]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA,IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IDA,IMP] [PMID 10545175]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IGI] [PMID 23569283]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 1379856]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006828 - manganese ion transport [Evidence IDA] [PMID 10801856]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ca(2+)/Mn(2+)-transporting P-type ATPase PMR1 complement(138695..141475) Sugiyamaella lignohabitans 30033881 AWJ20_2016 CDS AWJ20_2016 NC_031674.1 140253 140750 D unintegrated signal peptide 140253..140750 Sugiyamaella lignohabitans 30033882 AWJ20_2017 CDS MET10 NC_031674.1 142679 145846 R Subunit alpha of assimilatory sulfite reductase; complex converts sulfite into sulfide; GO_component: GO:0009337 - sulfite reductase complex (NADPH) [Evidence IDA] [PMID 6751400]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]; GO_function: GO:0004783 - sulfite reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0004783 - sulfite reductase (NADPH) activity [Evidence IDA] [PMID 6751400]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA]; GO_process: GO:0070814 - hydrogen sulfide biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0000103 - sulfate assimilation [Evidence IMP] [PMID 19236486]; GO_process: GO:0000103 - sulfate assimilation [Evidence IMP] [PMID 7928966]; sulfite reductase subunit alpha complement(142679..145846) Sugiyamaella lignohabitans 30033883 AWJ20_2018 CDS VID28 NC_031674.1 148020 150236 D GID Complex subunit, serves as adaptor for regulatory subunit Vid24p; protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPase); localized to the nucleus and the cytoplasm; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 16872538]; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 18508925]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 12586695]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12586695]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15358789]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 15358789]; glucose-induced degradation complex subunit VID28 148020..150236 Sugiyamaella lignohabitans 30033884 AWJ20_2019 CDS AWJ20_2019 NC_031674.1 150344 153412 R uncharacterized protein complement(150344..153412) Sugiyamaella lignohabitans 30033885 AWJ20_2020 CDS TRS20 NC_031674.1 154317 154637 D Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factors for the GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); mutation of conserved residues leads to defects in endocytic recycling and a block in sporulation/meiosis; mutations in the human homolog cause the spondyloepiphyseal dysplasia; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990070 - TRAPPI protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990072 - TRAPPIII protein complex [Evidence IDA] [PMID 20375281]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 9564032]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Trs20p 154317..154637 Sugiyamaella lignohabitans 30033887 AWJ20_2021 CDS AWJ20_2021 NC_031674.1 155042 156616 R uncharacterized protein complement(155042..156616) Sugiyamaella lignohabitans 30033888 AWJ20_2022 CDS AWJ20_2022 NC_031674.1 158301 159746 D Mitochondrial distribution and morphology protein 34 158301..159746 Sugiyamaella lignohabitans 30033889 AWJ20_2023 CDS SSM4 NC_031674.1 162624 165347 R Ubiquitin-protein ligase involved in ER-associated protein degradation; located in the ER/nuclear envelope; ssm4 mutation suppresses mRNA instability caused by an rna14 mutation; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11641273]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11641273]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 17051211]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 11641273]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11641273]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; E3 ubiquitin-protein ligase SSM4 complement(162624..165347) Sugiyamaella lignohabitans 30033890 AWJ20_2024 CDS SSM4 NC_031674.1 165903 166142 R Ubiquitin-protein ligase involved in ER-associated protein degradation; located in the ER/nuclear envelope; ssm4 mutation suppresses mRNA instability caused by an rna14 mutation; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11641273]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11641273]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 17051211]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 11641273]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11641273]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; E3 ubiquitin-protein ligase SSM4 complement(165903..166142) Sugiyamaella lignohabitans 30033891 AWJ20_2025 CDS TRM2 NC_031674.1 167427 169031 D tRNA methyltransferase; 5-methylates the uridine residue at position 54 of tRNAs and may also have a role in tRNA stabilization or maturation; endo-exonuclease with a role in DNA repair; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008173 - RNA methyltransferase activity [Evidence IEA]; GO_function: GO:0030697 - S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0051908 - double-stranded DNA 5'-3' exodeoxyribonuclease activity [Evidence IDA] [PMID 17205207]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0000014 - single-stranded DNA endodeoxyribonuclease activity [Evidence IDA] [PMID 17205207]; GO_function: GO:0030696 - tRNA (m5U54) methyltransferase activity [Evidence IDA,IMP] [PMID 10864043]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI,IMP] [PMID 17205207]; GO_process: GO:0001510 - RNA methylation [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI,IMP] [PMID 17534700]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 10864043]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Trm2p 167427..169031 Sugiyamaella lignohabitans 30033892 AWJ20_2027 CDS AWJ20_2027 NC_031674.1 175785 177227 R uncharacterized protein complement(175785..177227) Sugiyamaella lignohabitans 30033893 AWJ20_2029 CDS AWJ20_2029 NC_031674.1 178914 179924 R Bifunctional purine biosynthesis protein purH complement(178914..179924) Sugiyamaella lignohabitans 30033895 AWJ20_2030 CDS AWJ20_2030 NC_031674.1 180932 183247 D uncharacterized protein 180932..183247 Sugiyamaella lignohabitans 30033897 AWJ20_2031 CDS SUL1 NC_031674.1 186176 188560 D High affinity sulfate permease of the SulP anion transporter family; sulfate uptake is mediated by specific sulfate transporters Sul1p and Sul2p, which control the concentration of endogenous activated sulfate intermediates; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 7616962]; GO_function: GO:0008271 - secondary active sulfate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015116 - sulfate transmembrane transporter activity [Evidence IGI,IMP] [PMID 7616962]; GO_process: GO:1902358 - sulfate transmembrane transport [Evidence IEA]; GO_process: GO:0008272 - sulfate transport [Evidence IEA]; GO_process: GO:0008272 - sulfate transport [Evidence IGI,IMP] [PMID 7616962]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 7616962]; GO_process: GO:0006810 - transport [Evidence IEA]; Sul1p 186176..188560 Sugiyamaella lignohabitans 30033898 AWJ20_2032 CDS YJU2 NC_031674.1 188760 189698 R Essential protein required for pre-mRNA splicing; associates transiently with the spliceosomal NTC ('nineteen complex') and acts after Prp2p to promote the first catalytic reaction of splicing; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 17515604]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IDA] [PMID 17515604]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IDA] [PMID 17515604]; Yju2p complement(188760..189698) Sugiyamaella lignohabitans 30033899 AWJ20_2033 CDS TRK2 NC_031674.1 190962 193301 D Component of the Trk1p-Trk2p potassium transport system; contributes to K(+) supply and maintenance of plasma-membrane potential; TRK2 has a paralog, TRK1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence TAS] [PMID 2072919]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015079 - potassium ion transmembrane transporter activity [Evidence IDA,ISS] [PMID 2072919]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0030007 - cellular potassium ion homeostasis [Evidence IDA] [PMID 2072919]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0071805 - potassium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006813 - potassium ion transport [Evidence IEA]; GO_process: GO:0042391 - regulation of membrane potential [Evidence IMP] [PMID 21424545]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Trk2p 190962..193301 Sugiyamaella lignohabitans 30033900 AWJ20_2034 CDS TPO1 NC_031674.1 194218 195855 D Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p 194218..195855 Sugiyamaella lignohabitans 30033901 AWJ20_2035 CDS PBS2 NC_031674.1 197062 199857 D mitogen-activated protein kinase kinase PBS2 197062..199857 Sugiyamaella lignohabitans 30033902 AWJ20_2036 CDS ANR2 NC_031674.1 200119 201759 D hypothetical protein; may have a role in lipid metabolism, based on localization to lipid droplets; predicted to be palmitoylated; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Anr2p 200119..201759 Sugiyamaella lignohabitans 30033903 AWJ20_2037 CDS LHS1 NC_031674.1 201957 204599 R Molecular chaperone of the endoplasmic reticulum lumen; involved in polypeptide translocation and folding; nucleotide exchange factor for the ER lumenal Hsp70 chaperone Kar2p; regulated by the unfolded protein response pathway; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 8654361]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 8887673]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA,IMP] [PMID 19759005]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IDA] [PMID 14704430]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP,IPI] [PMID 10409721]; GO_function: GO:0051082 - unfolded protein binding [Evidence IGI,IMP] [PMID 8654361]; GO_function: GO:0051082 - unfolded protein binding [Evidence IGI,IMP] [PMID 8887673]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 8654361]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 8887673]; GO_process: GO:0006986 - response to unfolded protein [Evidence IGI,IMP] [PMID 8654361]; GO_process: GO:0006986 - response to unfolded protein [Evidence IGI,IMP] [PMID 8887673]; Hsp70 family chaperone LHS1 complement(201957..204599) Sugiyamaella lignohabitans 30033904 AWJ20_2038 CDS URA2 NC_031674.1 206591 213319 D Bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase; catalyzes the first two enzymatic steps in the de novo biosynthesis of pyrimidines; both activities are subject to feedback inhibition by UTP; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11015727]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 11921093]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016597 - amino acid binding [Evidence IEA]; GO_function: GO:0004070 - aspartate carbamoyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004070 - aspartate carbamoyltransferase activity [Evidence IDA] [PMID 10446140]; GO_function: GO:0004070 - aspartate carbamoyltransferase activity [Evidence IMP] [PMID 4550660]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 5776390]; GO_function: GO:0016743 - carboxyl- or carbamoyltransferase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0044205 - 'de novo' UMP biosynthetic process [Evidence IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IDA] [PMID 181668]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0070409 - carbamoyl phosphate biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006543 - glutamine catabolic process [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IDA] [PMID 5651325]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0045984 - negative regulation of pyrimidine nucleobase metabolic process [Evidence IDA] [PMID 5651325]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]; bifunctional carbamoylphosphate synthetase/aspartate transcarbamylase 206591..213319 Sugiyamaella lignohabitans 30033905 AWJ20_2039 CDS AWJ20_2039 NC_031674.1 214221 215399 D uncharacterized protein 214221..215399 Sugiyamaella lignohabitans 30033906 AWJ20_2040 CDS SEC27 NC_031674.1 218687 221182 D Essential beta'-coat protein of the COPI coatomer; involved in ER-to-Golgi and Golgi-to-ER transport; contains WD40 domains that mediate cargo selective interactions; 45% sequence identity to mammalian beta'-COP; GO_component: GO:0030126 - COPI vesicle coat [Evidence IGI,ISS] [PMID 7929113]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 7929113]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP,IPI] [PMID 17101773]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8001155]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA,IEA]; Sec27p 218687..221182 Sugiyamaella lignohabitans 30033908 AWJ20_2041 CDS AWJ20_2041 NC_031674.1 221497 222978 D uncharacterized protein 221497..222978 Sugiyamaella lignohabitans 30033909 AWJ20_2042 CDS AWJ20_2042 NC_031674.1 223075 223743 R uncharacterized protein complement(223075..223743) Sugiyamaella lignohabitans 30033910 AWJ20_2043 CDS AWJ20_2043 NC_031674.1 225405 226148 R uncharacterized protein complement(225405..226148) Sugiyamaella lignohabitans 30033911 AWJ20_2044 CDS HNM1 NC_031674.1 227499 229136 R Plasma membrane transporter for choline, ethanolamine, and carnitine; involved in the uptake of nitrogen mustard and the uptake of glycine betaine during hypersaline stress; co-regulated with phospholipid biosynthetic genes and negatively regulated by choline and myo-inositol; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 2203793]; GO_function: GO:1901235 - (R)-carnitine transmembrane transporter activity [Evidence IMP] [PMID 23755272]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IMP] [PMID 2203793]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_function: GO:0034228 - ethanolamine transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_process: GO:1900749 - (R)-carnitine transport [Evidence IMP] [PMID 23755272]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015871 - choline transport [Evidence IMP] [PMID 2203793]; GO_process: GO:0015871 - choline transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0034229 - ethanolamine transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0031460 - glycine betaine transport [Evidence IMP] [PMID 16487344]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hnm1p complement(227499..229136) Sugiyamaella lignohabitans 30033912 AWJ20_2045 CDS AWJ20_2045 NC_031674.1 230964 231419 D uncharacterized protein 230964..231419 Sugiyamaella lignohabitans 30033913 AWJ20_2046 CDS RTR1 NC_031674.1 234659 235537 D CTD phosphatase; dephosphorylates S5-P in the C-terminal domain of Rpo21p; has a cysteine-rich motif required for function and conserved in eukaryotes; shuttles between the nucleus and cytoplasm; RTR1 has a paralog, RTR2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18408053]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18408053]; GO_function: GO:0008420 - CTD phosphatase activity [Evidence IDA] [PMID 19394294]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA,IMP] [PMID 19394294]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI,IMP,IPI] [PMID 18408053]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rtr1p 234659..235537 Sugiyamaella lignohabitans 30033914 AWJ20_2047 CDS HXT13 NC_031674.1 236924 238288 D hexose transporter HXT13 236924..238288 Sugiyamaella lignohabitans 30033915 AWJ20_2048 CDS SIP5 NC_031674.1 242372 244669 D hypothetical protein; interacts with both the Reg1p/Glc7p phosphatase and the Snf1p kinase; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 10628972]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042149 - cellular response to glucose starvation [Evidence IMP,IPI] [PMID 10628972]; Sip5p join(242372..242725,242918..244669) Sugiyamaella lignohabitans 30033916 AWJ20_2049 CDS HAC1 NC_031674.1 250855 252030 D transcription factor HAC1 250855..252030 Sugiyamaella lignohabitans 30033917 AWJ20_2050 CDS AWJ20_2050 NC_031674.1 254820 256241 D uncharacterized protein 254820..256241 Sugiyamaella lignohabitans 30033919 AWJ20_2051 CDS GLE2 NC_031674.1 256745 257827 D RNA export factor associated with the nuclear pore complex (NPC); associates with NUP116p; required for polyadenylated RNA export but not for protein import; homologous to S. pombe Rae1p and human RAE1; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15210706]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 8970155]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9725905]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 8970155]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:2000728 - regulation of mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 15210706]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20098417]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006810 - transport [Evidence IEA]; RNA export factor GLE2 256745..257827 Sugiyamaella lignohabitans 30033920 AWJ20_2052 CDS IGO2 NC_031674.1 258533 258823 R Protein required for initiation of G0 program; prevents degradation of nutrient-regulated mRNAs via the 5'-3' mRNA decay pathway; phosphorylated by Rim15p; GFP protein localizes to the cytoplasm and nucleus; IGO2 has a paralog, IGO1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0019208 - phosphatase regulator activity [Evidence IMP] [PMID 23861665]; GO_process: GO:0048255 - mRNA stabilization [Evidence IGI] [PMID 20471941]; Igo2p complement(258533..258823) Sugiyamaella lignohabitans 30033921 AWJ20_2053 CDS MRPS16 NC_031674.1 264441 264833 R Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein MRPS16 complement(264441..264833) Sugiyamaella lignohabitans 30033922 AWJ20_2055 CDS DNM1 NC_031674.1 266084 268516 D Dynamin-related GTPase involved in mitochondrial organization; required for mitochondrial fission and morphology; assembles on the cytoplasmic face of mitochondrial tubules at sites at which division will occur; also participates in endocytosis and regulating peroxisome abundance; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 11038182]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 16968746]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 16186251]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042802 - identical protein binding [Evidence IDA] [PMID 16186251]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA] [PMID 16186251]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 18298044]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000266 - mitochondrial fission [Evidence IGI,IMP] [PMID 10559943]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI] [PMID 17336903]; GO_process: GO:0051646 - mitochondrion localization [Evidence IGI] [PMID 23341591]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 9786946]; GO_process: GO:0016559 - peroxisome fission [Evidence IGI] [PMID 18445678]; GO_process: GO:0007031 - peroxisome organization [Evidence IGI,IMP] [PMID 16968746]; GO_process: GO:0051260 - protein homooligomerization [Evidence IDA] [PMID 16186251]; dynamin-related GTPase DNM1 266084..268516 Sugiyamaella lignohabitans 30033924 AWJ20_2056 CDS AIM17 NC_031674.1 268605 269843 R hypothetical protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; null mutant displays reduced frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Aim17p complement(268605..269843) Sugiyamaella lignohabitans 30033925 AWJ20_2057 CDS RTT109 NC_031674.1 271524 272657 R H3 histone acetyltransferase RTT109 complement(271524..272657) Sugiyamaella lignohabitans 30033926 AWJ20_2058 CDS PRE3 NC_031674.1 273377 273655 R Beta 1 subunit of the 20S proteasome; responsible for cleavage after acidic residues in peptides; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 9207060]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 9312134]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 1 complement(273377..273655) Sugiyamaella lignohabitans 30033927 AWJ20_2059 CDS moe1 NC_031674.1 274720 276381 D translation initiation factor eIF3d Moe1 274720..276381 Sugiyamaella lignohabitans 30033928 AWJ20_2060 CDS AWJ20_2060 NC_031674.1 276531 279335 R centrin-binding protein Sfi1 complement(276531..279335) Sugiyamaella lignohabitans 30033930 AWJ20_2061 CDS OST1 NC_031674.1 280181 281587 D Alpha subunit of the oligosaccharyltransferase complex of the ER lumen; complex catalyzes asparagine-linked glycosylation of newly synthesized proteins; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 10358084]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 16297388]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 9405463]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IEA]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IDA] [PMID 9015380]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IDA] [PMID 9015380]; GO_process: GO:0018279 - protein N-linked glycosylation via asparagine [Evidence IPI] [PMID 9988747]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; Ost1p 280181..281587 Sugiyamaella lignohabitans 30033931 AWJ20_2062 CDS AWJ20_2062 NC_031674.1 281858 283507 R uncharacterized protein complement(281858..283507) Sugiyamaella lignohabitans 30033932 AWJ20_2064 CDS FRE2 NC_031674.1 285954 286562 R Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low iron levels but not by low copper levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 9153234]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre2p complement(285954..286562) Sugiyamaella lignohabitans 30033934 AWJ20_2065 CDS AWJ20_2065 NC_031674.1 288477 289481 R uncharacterized protein complement(288477..289481) Sugiyamaella lignohabitans 30033935 AWJ20_2066 CDS AWJ20_2066 NC_031674.1 292168 293631 D uncharacterized protein 292168..293631 Sugiyamaella lignohabitans 30033936 AWJ20_2067 CDS TRX1 NC_031674.1 294890 295204 R Cytoplasmic thioredoxin isoenzyme; part of thioredoxin system which protects cells against oxidative and reductive stress; forms LMA1 complex with Pbi2p; acts as a cofactor for Tsa1p; required for ER-Golgi transport and vacuole inheritance; with Trx2p, facilitates mitochondrial import of small Tims Tim9p, Tim10p, Tim13p by maintaining them in reduced form; abundance increases iunder DNA replication stress; TRX1 has a paralog, TRX2, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8603912]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IPI] [PMID 9657146]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence IDA] [PMID 19362171]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence ISS] [PMID 1988444]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IDA] [PMID 9813082]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0045454 - cell redox homeostasis [Evidence TAS] [PMID 11169096]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence ISS] [PMID 1988444]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006662 - glycerol ether metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0080058 - protein deglutathionylation [Evidence IDA,IGI] [PMID 20074363]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IDA] [PMID 9813082]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA] [PMID 9657146]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 8603912]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 9015301]; thioredoxin TRX1 complement(294890..295204) Sugiyamaella lignohabitans 30033937 AWJ20_2068 CDS AWJ20_2068 NC_031674.1 294927 295127 D uncharacterized protein 294927..295127 Sugiyamaella lignohabitans 30033938 AWJ20_2069 CDS AWJ20_2069 NC_031674.1 296328 296669 D uncharacterized protein 296328..296669 Sugiyamaella lignohabitans 30033939 AWJ20_2070 CDS AWJ20_2070 NC_031674.1 301055 302038 R uncharacterized protein complement(301055..302038) Sugiyamaella lignohabitans 30033941 AWJ20_2071 CDS TRP5 NC_031674.1 303610 305703 D Tryptophan synthase; catalyzes the last step of tryptophan biosynthesis; regulated by the general control system of amino acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004834 - tryptophan synthase activity [Evidence IEA,IEA]; GO_function: GO:0004834 - tryptophan synthase activity [Evidence IDA] [PMID 391563]; GO_function: GO:0004834 - tryptophan synthase activity [Evidence ISO] [PMID 6276387]; GO_function: GO:0004834 - tryptophan synthase activity [Evidence IDA] [PMID 6342605]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 10790693]; GO_process: GO:0006568 - tryptophan metabolic process [Evidence IEA]; tryptophan synthase TRP5 303610..305703 Sugiyamaella lignohabitans 30033942 AWJ20_2072 CDS AWJ20_2072 NC_031674.1 305901 308699 D uncharacterized protein 305901..308699 Sugiyamaella lignohabitans 30033943 AWJ20_2073 CDS CWH41 NC_031674.1 309160 311664 D Processing alpha glucosidase I; ER type II integral membrane N-glycoprotein involved in assembly of cell wall beta 1,6 glucan and asparagine-linked protein glycosylation; also involved in ER protein quality control and sensing of ER stress; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8576053]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004573 - mannosyl-oligosaccharide glucosidase activity [Evidence IEA,IEA]; GO_function: GO:0004573 - mannosyl-oligosaccharide glucosidase activity [Evidence IDA] [PMID 14680956]; GO_function: GO:0004573 - mannosyl-oligosaccharide glucosidase activity [Evidence IMP,ISS] [PMID 9430631]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IMP] [PMID 9430631]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009311 - oligosaccharide metabolic process [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 9363442]; Cwh41p 309160..311664 Sugiyamaella lignohabitans 30033944 AWJ20_2074 CDS RTC2 NC_031674.1 311800 312810 R Putative vacuolar membrane transporter for cationic amino acids; likely contributes to amino acid homeostasis by exporting cationic amino acids from the vacuole; positive regulation by Lys14p suggests that lysine may be the primary substrate; member of the PQ-loop family, with seven transmembrane domains; similar to mammalian PQLC2 vacuolar transporter; RTC2 has a paralog, YPQ1, that arose from the whole genome duplication; GO_component: GO:0071627 - integral component of fungal-type vacuolar membrane [Evidence IDA] [PMID 23169667]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015326 - cationic amino acid transmembrane transporter activity [Evidence IMP,ISA] [PMID 23169667]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0034488 - basic amino acid transmembrane export from vacuole [Evidence IMP,ISA] [PMID 23169667]; GO_process: GO:0006810 - transport [Evidence IEA]; Rtc2p complement(311800..312810) Sugiyamaella lignohabitans 30033945 AWJ20_2075 CDS RPL8B NC_031674.1 314581 315369 D Ribosomal 60S subunit protein L8B; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; L8 binds to Domain I of 25S and 5.8 S rRNAs; mutation results in decreased amounts of free 60S subunits; homologous to mammalian ribosomal protein L7A, no bacterial homolog; RPL8B has a paralog, RPL8A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA,IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0000470 - maturation of LSU-rRNA [Evidence IMP] [PMID 22893726]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; ribosomal 60S subunit protein L8B 314581..315369 Sugiyamaella lignohabitans 30033946 AWJ20_2076 CDS AWJ20_2076 NC_031674.1 315607 317217 D similar to Pantoea sp. aB, conserved hypothetical protein (NCBI: ZP_07377486.1); uncharacterized protein 315607..317217 Sugiyamaella lignohabitans 30033947 AWJ20_2078 CDS RPL2A NC_031674.1 318406 319170 D Ribosomal 60S subunit protein L2A; homologous to mammalian ribosomal protein L2 and bacterial L2; RPL2A has a paralog, RPL2B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L2A 318406..319170 Sugiyamaella lignohabitans 30033949 AWJ20_2079 CDS SMC2 NC_031674.1 319897 323022 D Subunit of the condensin complex; condensin reorganizes chromosomes during both mitosis and meiosis; essential SMC chromosomal ATPase family member that forms a subcomplex with Smc2p that has ATP-hydrolyzing and DNA-binding activity, but other condensin subunits are required for chromatin binding; required for clustering of tRNA genes at the nucleolus; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA,IEA]; GO_component: GO:0000796 - condensin complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IDA] [PMID 10811823]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003680 - AT DNA binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 12719426]; GO_function: GO:0000217 - DNA secondary structure binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16055730]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IEA]; GO_process: GO:0010032 - meiotic chromosome condensation [Evidence IC] [PMID 10811823]; GO_process: GO:0051307 - meiotic chromosome separation [Evidence IC] [PMID 10811823]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IEA]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 10811823]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 10811823]; GO_process: GO:0070550 - rDNA condensation [Evidence IMP] [PMID 10811823]; GO_process: GO:0007130 - synaptonemal complex assembly [Evidence IC] [PMID 10811823]; GO_process: GO:0070058 - tRNA gene clustering [Evidence IMP] [PMID 18708579]; condensin subunit SMC2 319897..323022 Sugiyamaella lignohabitans 30033950 AWJ20_2080 CDS QCR6 NC_031674.1 323724 324818 R Subunit 6 of the ubiquinol cytochrome-c reductase complex; the complex, also known as the cytochrome bc(1) complex or Complex III, is a component of the mitochondrial inner membrane electron transport chain; highly acidic protein; required for maturation of cytochrome c1; may be loosely associated with the complex since it is easily released into the intermembrane space; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 10873857]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA]; GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IMP] [PMID 8288589]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8288589]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IEA]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IMP] [PMID 8288589]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; ubiquinol--cytochrome-c reductase subunit 6 complement(join(323724..324203,324747..324818)) Sugiyamaella lignohabitans 30033952 AWJ20_2081 CDS AWJ20_2081 NC_031674.1 326465 327412 R uncharacterized protein complement(326465..327412) Sugiyamaella lignohabitans 30033953 AWJ20_2082 CDS AWJ20_2082 NC_031674.1 331036 332076 D uncharacterized protein 331036..332076 Sugiyamaella lignohabitans 30033954 AWJ20_2083 CDS AWJ20_2083 NC_031674.1 332385 333455 R uncharacterized protein complement(332385..333455) Sugiyamaella lignohabitans 30033955 AWJ20_2084 CDS FMT1 NC_031674.1 334892 336025 D Methionyl-tRNA formyltransferase; catalyzes the formylation of initiator Met-tRNA in mitochondria; potential Cdc28p substrate; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 5277072]; GO_function: GO:0016742 - hydroxymethyl-, formyl- and related transferase activity [Evidence IEA]; GO_function: GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IMP] [PMID 10781559]; GO_function: GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IDA] [PMID 12549912]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0071951 - conversion of methionyl-tRNA to N-formyl-methionyl-tRNA [Evidence IEA]; GO_process: GO:0071951 - conversion of methionyl-tRNA to N-formyl-methionyl-tRNA [Evidence IMP] [PMID 10781559]; GO_process: GO:0071951 - conversion of methionyl-tRNA to N-formyl-methionyl-tRNA [Evidence IDA] [PMID 12549912]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; Fmt1p 334892..336025 Sugiyamaella lignohabitans 30033956 AWJ20_2085 CDS VPS13 NC_031674.1 336117 338450 R membrane morphogenesis protein VPS13 complement(336117..338450) Sugiyamaella lignohabitans 30033957 AWJ20_2086 CDS VPS13 NC_031674.1 339147 341327 R membrane morphogenesis protein VPS13 complement(339147..341327) Sugiyamaella lignohabitans 30033958 AWJ20_2087 CDS VPS13 NC_031674.1 341788 348480 R membrane morphogenesis protein VPS13 complement(join(341788..341800,341872..345791,348364..348480)) Sugiyamaella lignohabitans 30033959 AWJ20_2088 CDS PIM1 NC_031674.1 347195 350866 D ATP-dependent Lon protease; involved in degradation of misfolded proteins in mitochondria; required for biogenesis and maintenance of mitochondria; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IMP] [PMID 8146662]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IMP] [PMID 8276800]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IBA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA,IEA]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IEA,IEA]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IMP] [PMID 8146662]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IMP] [PMID 8276800]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0070361 - mitochondrial light strand promoter anti-sense binding [Evidence IBA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IBA]; GO_function: GO:0003727 - single-stranded RNA binding [Evidence IBA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA,IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IBA,IEA]; GO_process: GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]; GO_process: GO:0051131 - chaperone-mediated protein complex assembly [Evidence IGI] [PMID 8810243]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IEA,IEA]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 16336126]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IGI,IMP] [PMID 7957078]; GO_process: GO:0007005 - mitochondrion organization [Evidence IBA]; GO_process: GO:0070407 - oxidation-dependent protein catabolic process [Evidence IBA,IEA]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0051260 - protein homooligomerization [Evidence IBA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0090296 - regulation of mitochondrial DNA replication [Evidence IEA]; GO_process: GO:0001666 - response to hypoxia [Evidence IBA]; ATP-dependent Lon protease PIM1 347195..350866 Sugiyamaella lignohabitans 30033960 AWJ20_2089 CDS AWJ20_2089 NC_031674.1 350365 350730 R uncharacterized protein complement(350365..350730) Sugiyamaella lignohabitans 30033961 AWJ20_2090 CDS YIP5 NC_031674.1 351424 352278 D Protein that interacts with Rab GTPases; localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 17178117]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0017137 - Rab GTPase binding [Evidence IPI] [PMID 11943201]; GO_process: GO:0008150 - biological_process [Evidence ND]; Yip5p 351424..352278 Sugiyamaella lignohabitans 30033963 AWJ20_2091 CDS YVC1 NC_031674.1 352506 354461 R Vacuolar cation channel; mediates release of Ca(2+) from the vacuole in response to hyperosmotic shock; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11427713]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11781332]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20035756]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005227 - calcium activated cation channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005262 - calcium channel activity [Evidence IEA]; GO_function: GO:0005262 - calcium channel activity [Evidence IDA] [PMID 11781332]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005267 - potassium channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005272 - sodium channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005244 - voltage-gated ion channel activity [Evidence IDA] [PMID 1700419]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IDA,IMP] [PMID 11427713]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IDA,IMP] [PMID 11781332]; GO_process: GO:0006811 - ion transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Yvc1p complement(352506..354461) Sugiyamaella lignohabitans 30033964 AWJ20_2092 CDS CIR2 NC_031674.1 356207 358228 D Putative ortholog of human ETF-dH; found in a large supramolecular complex with other mitochondrial dehydrogenases; may have a role in oxidative stress response; ETF-dH is also known as electron transfer flavoprotein dehydrogenase; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IPI] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0004174 - electron-transferring-flavoprotein dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cir2p 356207..358228 Sugiyamaella lignohabitans 30033965 AWJ20_2093 CDS NMA1 NC_031674.1 360167 361426 D Nicotinic acid mononucleotide adenylyltransferase; catalyzes the transfer of the adenylyl moiety of ATP to nicotinamide mononucleotide to form NAD; involved in pathways of NAD biosynthesis, including the de novo, NAD(+) salvage, and nicotinamide riboside salvage pathways; homolog of human NMNAT; NMA1 has a paralog, NMA2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]; GO_function: GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IDA] [PMID 10428462]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IDA] [PMID 10428462]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]; nicotinamide-nucleotide adenylyltransferase NMA1 360167..361426 Sugiyamaella lignohabitans 30033966 AWJ20_2094 CDS AWJ20_2094 NC_031674.1 367021 368586 D uncharacterized protein 367021..368586 Sugiyamaella lignohabitans 30033967 AWJ20_2095 CDS PAN2 NC_031674.1 368795 371680 R Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex; complex acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes; GO_component: GO:0031251 - PAN complex [Evidence IDA] [PMID 8816488]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0004535 - poly(A)-specific ribonuclease activity [Evidence IEA]; GO_function: GO:0004535 - poly(A)-specific ribonuclease activity [Evidence IMP] [PMID 8550599]; GO_process: GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic [Evidence IEA]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP,IPI] [PMID 8550599]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IMP,IPI] [PMID 8550599]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0006301 - postreplication repair [Evidence IGI,IPI] [PMID 11953437]; Pan2p complement(368795..371680) Sugiyamaella lignohabitans 30033968 AWJ20_2097 CDS GSH1 NC_031674.1 377609 379693 R Gamma glutamylcysteine synthetase; catalyzes the first step in glutathione (GSH) biosynthesis; expression induced by oxidants, cadmium, and mercury; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IBA]; GO_component: GO:0005622 - intracellular [Evidence IDA] [PMID 2184310]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA,IEA]; GO_function: GO:0004357 - glutamate-cysteine ligase activity [Evidence IDA] [PMID 1687097]; GO_function: GO:0004357 - glutamate-cysteine ligase activity [Evidence IMP] [PMID 2184310]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IDA] [PMID 1687097]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IMP] [PMID 8768524]; GO_process: GO:0046686 - response to cadmium ion [Evidence IDA] [PMID 10921921]; GO_process: GO:0042542 - response to hydrogen peroxide [Evidence IMP] [PMID 7615092]; glutamate--cysteine ligase complement(377609..379693) Sugiyamaella lignohabitans 30033970 AWJ20_2098 CDS CUP9 NC_031674.1 390180 391613 D Homeodomain-containing transcriptional repressor; regulates expression of PTR2, which encodes a major peptide transporter; imported peptides activate ubiquitin-dependent proteolysis, resulting in degradation of Cup9p and de-repression of PTR2 transcription; CUP9 has a paralog, TOS8, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9427760]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9427760]; GO_function: GO:0001103 - RNA polymerase II repressing transcription factor binding [Evidence IPI] [PMID 18708352]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0001133 - sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IC] [PMID 18708352]; GO_function: GO:0001133 - sequence-specific transcription regulatory region DNA binding RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IC] [PMID 9427760]; GO_process: GO:0035955 - negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10850718]; GO_process: GO:0035955 - negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17005992]; GO_process: GO:0035955 - negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 18708352]; GO_process: GO:0035955 - negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9427760]; GO_process: GO:0035952 - negative regulation of oligopeptide transport by negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17005992]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; Cup9p 390180..391613 Sugiyamaella lignohabitans 30033971 AWJ20_2099 CDS CTI6 NC_031674.1 392070 394457 R Component of the Rpd3L histone deacetylase complex; relieves transcriptional repression by binding to the Cyc8p-Tup1p corepressor and recruiting the SAGA complex to the repressed promoter; contains a PHD finger domain; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16314178]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12086626]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0008134 - transcription factor binding [Evidence IDA] [PMID 12086626]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0061188 - negative regulation of chromatin silencing at rDNA [Evidence IMP] [PMID 16286008]; GO_process: GO:0061186 - negative regulation of chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16286008]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IMP] [PMID 12086626]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 19417103]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Cti6p complement(392070..394457) Sugiyamaella lignohabitans 30033972 AWJ20_2101 CDS TCO89 NC_031674.1 395314 397683 R Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p); regulates global H3K56ac; TORC1 complex regulates growth in response to nutrient availability; cooperates with Ssd1p in the maintenance of cellular integrity; deletion strains are hypersensitive to rapamycin; GO_component: GO:0031931 - TORC1 complex [Evidence IPI] [PMID 14736892]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IDA] [PMID 14736892]; GO_component: GO:0000306 - extrinsic component of vacuolar membrane [Evidence IDA] [PMID 14736892]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 17560372]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 14736892]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 14736892]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IGI] [PMID 10931309]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 14736892]; GO_process: GO:0009651 - response to salt stress [Evidence IMP] [PMID 17298473]; Tco89p complement(395314..397683) Sugiyamaella lignohabitans 30033976 AWJ20_2102 CDS VPS45 NC_031674.1 399353 400633 D Protein of the Sec1p/Munc-18 family; essential for vacuolar protein sorting; required for the function of Pep12p and the early endosome/late Golgi SNARE Tlg2p; essential for fusion of Golgi-derived vesicles with the prevacuolar compartment; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 7720726]; GO_component: GO:0031201 - SNARE complex [Evidence IPI] [PMID 10397773]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9624182]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 7720726]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0000149 - SNARE binding [Evidence IPI] [PMID 16769821]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP,IPI] [PMID 11432826]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 10545112]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI] [PMID 9335586]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 7720726]; GO_process: GO:0048210 - Golgi vesicle fusion to target membrane [Evidence IMP] [PMID 9650782]; GO_process: GO:0035543 - positive regulation of SNARE complex assembly [Evidence IMP] [PMID 11432826]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 7628704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IMP] [PMID 7628704]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 1493335]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 9650782]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Vps45p 399353..400633 Sugiyamaella lignohabitans 30033977 AWJ20_2103 CDS CBC2 NC_031674.1 401313 401825 R Small subunit of the heterodimeric cap binding complex with Sto1p; interacts with Npl3p, possibly to package mRNA for export from the nucleus; may have a role in telomere maintenance; contains an RNA-binding motif; GO_component: GO:0000243 - commitment complex [Evidence IDA] [PMID 8682299]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005846 - nuclear cap binding complex [Evidence IEA]; GO_component: GO:0005846 - nuclear cap binding complex [Evidence IDA] [PMID 8811086]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0000339 - RNA cap binding [Evidence IEA]; GO_function: GO:0000339 - RNA cap binding [Evidence IDA,ISS] [PMID 8682299]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0045292 - mRNA cis splicing, via spliceosome [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 8682299]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cbc2p complement(401313..401825) Sugiyamaella lignohabitans 30033978 AWJ20_2104 CDS DJP1 NC_031674.1 404526 406079 D Cytosolic J-domain-containing protein; required for peroxisomal protein import and involved in peroxisome assembly, homologous to E. coli DnaJ; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9679141]; GO_function: GO:0051087 - chaperone binding [Evidence ISS] [PMID 9679141]; GO_process: GO:0016558 - protein import into peroxisome matrix [Evidence IMP] [PMID 9679141]; Djp1p 404526..406079 Sugiyamaella lignohabitans 30033979 AWJ20_2105 CDS AWJ20_2105 NC_031674.1 406313 407005 R uncharacterized protein complement(406313..407005) Sugiyamaella lignohabitans 30033980 AWJ20_2106 CDS AWJ20_2106 NC_031674.1 407804 409573 R Uric acid-xanthine permease (UAPA transporter) complement(407804..409573) Sugiyamaella lignohabitans 30033981 AWJ20_2107 CDS CLG1 NC_031674.1 414602 416371 D Cyclin-like protein that interacts with Pho85p; has sequence similarity to G1 cyclins PCL1 and PCL2; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 9032248]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence ISA] [PMID 8212900]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IPI] [PMID 9032248]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0016239 - positive regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; Clg1p 414602..416371 Sugiyamaella lignohabitans 30033982 AWJ20_2108 CDS AWJ20_2108 NC_031674.1 416740 418065 R Protein with 2-aminoadipate transaminase activity; shares amino acid similarity with the aminotransferases Aro8p and Aro9p; YER152C is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IDA] [PMID 19342587]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; 2-aminoadipate transaminase complement(416740..418065) Sugiyamaella lignohabitans 30033983 AWJ20_2109 CDS KIP3 NC_031674.1 418614 421067 R Kinesin-related antiparallel sliding motor protein involved in mitotic spindle positioning; sliding activity promotes bipolar spindle assembly and maintenance of genome stability; also inhibits spindle elongation and promotes spindle disassembly in late anaphase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 9693366]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IDA] [PMID 9693366]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906145]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906148]; GO_function: GO:0070463 - tubulin-dependent ATPase activity [Evidence IDA] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IMP] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 23851487]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 9813090]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IGI,IMP] [PMID 10525539]; GO_process: GO:0031115 - negative regulation of microtubule polymerization [Evidence IMP] [PMID 24616221]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 9693366]; GO_process: GO:0070462 - plus-end specific microtubule depolymerization [Evidence IDA] [PMID 16906145]; GO_process: GO:0070462 - plus-end specific microtubule depolymerization [Evidence IDA] [PMID 16906148]; GO_process: GO:0032888 - regulation of mitotic spindle elongation [Evidence IMP] [PMID 24616221]; GO_process: GO:0090307 - spindle assembly involved in mitosis [Evidence IMP] [PMID 23851487]; tubulin-dependent ATPase KIP3 complement(418614..421067) Sugiyamaella lignohabitans 30033984 AWJ20_2110 CDS OXA1 NC_031674.1 423686 425777 D Mitochondrial inner membrane insertase; mediates the insertion of both mitochondrial- and nuclear-encoded proteins from the matrix into the inner membrane; also has a role in insertion of carrier proteins into the inner membrane; acts as a voltage-gated ion channel, activated by substrate peptides; interacts with mitochondrial ribosomes; conserved from bacteria to animals; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030061 - mitochondrial crista [Evidence IDA] [PMID 22513091]; GO_component: GO:0097002 - mitochondrial inner boundary membrane [Evidence IDA] [PMID 22513091]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 14657017]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 19783770]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005216 - ion channel activity [Evidence IDA] [PMID 22829595]; GO_function: GO:0032977 - membrane insertase activity [Evidence IMP] [PMID 9285818]; GO_function: GO:0032977 - membrane insertase activity [Evidence IMP] [PMID 9428747]; GO_function: GO:0097177 - mitochondrial ribosome binding [Evidence IDA] [PMID 14657018]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI,IMP] [PMID 18826960]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IMP] [PMID 17344477]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IMP] [PMID 22846909]; GO_process: GO:0051205 - protein insertion into membrane [Evidence IEA]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP] [PMID 17452441]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP] [PMID 9285818]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP] [PMID 9428747]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP,IPI] [PMID 9482871]; Oxa1p join(423686..423807,424616..425777) Sugiyamaella lignohabitans 30033986 AWJ20_2111 CDS LPX1 NC_031674.1 425996 427117 R Peroxisomal matrix-localized lipase; required for normal peroxisome morphology; contains a peroxisomal targeting signal type 1 (PTS1) and a lipase motif; peroxisomal import requires the PTS1 receptor, Pex5p and self-interaction; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance; oleic acid inducible; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 12135984]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016298 - lipase activity [Evidence IDA] [PMID 18199283]; GO_function: GO:0016298 - lipase activity [Evidence ISS] [PMID 9200815]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA] [PMID 24187129]; GO_process: GO:0007031 - peroxisome organization [Evidence IEP] [PMID 12135984]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI] [PMID 24187129]; Lpx1p complement(425996..427117) Sugiyamaella lignohabitans 30033987 AWJ20_2112 CDS GAL83 NC_031674.1 429657 431081 D One of three possible beta-subunits of the Snf1 kinase complex; allows nuclear localization of the Snf1 kinase complex in the presence of a nonfermentable carbon source; contains glycogen-binding domain; GAL83 has a paralog, SIP2, that arose from the whole genome duplication; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IDA] [PMID 12393914]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IPI] [PMID 7813428]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IPI] [PMID 9121458]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17237508]; GO_component: GO:0005641 - nuclear envelope lumen [Evidence IDA] [PMID 17237508]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11331606]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17237508]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IGI] [PMID 10990457]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IMP] [PMID 7813428]; GO_process: GO:0007155 - cell adhesion [Evidence IMP] [PMID 12556493]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 12556493]; GO_process: GO:0006468 - protein phosphorylation [Evidence IGI] [PMID 10990457]; GO_process: GO:0043254 - regulation of protein complex assembly [Evidence IGI] [PMID 9121458]; GO_process: GO:0007165 - signal transduction [Evidence IGI] [PMID 10990457]; Gal83p 429657..431081 Sugiyamaella lignohabitans 30033988 AWJ20_2113 CDS BEM2 NC_031674.1 435444 441317 D Rho GTPase activating protein (RhoGAP); involved in the control of cytoskeleton organization and cellular morphogenesis; required for bud emergence; potential GAP for Rho4p; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 17914457]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17914457]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17914457]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 17914457]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 17914457]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17914457]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 7962098]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 7579704]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IC] [PMID 7579704]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI,IMP] [PMID 17914457]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0043087 - regulation of GTPase activity [Evidence IEA]; GO_process: GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Bem2p 435444..441317 Sugiyamaella lignohabitans 30033989 AWJ20_2114 CDS MDM34 NC_031674.1 442341 443831 D ERMES complex subunit MDM34 442341..443831 Sugiyamaella lignohabitans 30033990 AWJ20_2115 CDS AWJ20_2115 NC_031674.1 444091 445053 R uncharacterized protein complement(444091..445053) Sugiyamaella lignohabitans 30033991 AWJ20_2116 CDS AWJ20_2116 NC_031674.1 445482 448082 R Putative acyltransferase with similarity to Eeb1p and Eht1p; has a minor role in medium-chain fatty acid ethyl ester biosynthesis; may be involved in lipid metabolism and detoxification; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence ISS] [PMID 16361250]; GO_process: GO:0051792 - medium-chain fatty acid biosynthetic process [Evidence IGI] [PMID 16361250]; putative carboxylic ester hydrolase complement(445482..448082) Sugiyamaella lignohabitans 30033992 AWJ20_2117 CDS LSC1 NC_031674.1 450004 451929 D Alpha subunit of succinyl-CoA ligase; succinyl-CoA ligase is a mitochondrial enzyme of the TCA cycle that catalyzes the nucleotide-dependent conversion of succinyl-CoA to succinate; phosphorylated; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9874242]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003878 - ATP citrate synthase activity [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IEA,IEA]; GO_function: GO:0004775 - succinate-CoA ligase (ADP-forming) activity [Evidence IDA,IMP,ISS] [PMID 9874242]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006104 - succinyl-CoA metabolic process [Evidence IDA] [PMID 9874242]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; succinate--CoA ligase (GDP-forming) subunit alpha 450004..451929 Sugiyamaella lignohabitans 30033993 AWJ20_2118 CDS GTR2 NC_031674.1 452244 453203 R Putative GTP binding protein; negatively regulates Ran/Tc4 GTPase cycle; activates transcription; subunit of EGO and GSE complexes; required for sorting of Gap1p; localizes to cytoplasm and to chromatin; homolog of human RagC and RagD; GO_component: GO:0034448 - EGO complex [Evidence IPI] [PMID 15989961]; GO_component: GO:0034448 - EGO complex [Evidence IDA] [PMID 16732272]; GO_component: GO:1990131 - Gtr1-Gtr2 GTPase complex [Evidence IPI] [PMID 10388807]; GO_component: GO:1990131 - Gtr1-Gtr2 GTPase complex [Evidence IPI] [PMID 16143306]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10388807]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11073942]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 15989961]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031902 - late endosome membrane [Evidence IDA] [PMID 16732272]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 18258182]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10388807]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11073942]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISA] [PMID 10388807]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0016237 - microautophagy [Evidence IMP] [PMID 15989961]; GO_process: GO:0032008 - positive regulation of TOR signaling [Evidence IGI,IMP] [PMID 19748353]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 18258182]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Gtr2p complement(452244..453203) Sugiyamaella lignohabitans 30033994 AWJ20_2119 CDS TYW3 NC_031674.1 454004 454867 D tRNA methyltransferase required for synthesis of wybutosine; a modified guanosine found at the 3'-position adjacent to the anticodon of phenylalanine tRNA which supports reading frame maintenance by stabilizing codon-anticodon interactions; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IDA,IMP] [PMID 16642040]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA,IMP] [PMID 16642040]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 16642040]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 17150819]; Tyw3p 454004..454867 Sugiyamaella lignohabitans 30033995 AWJ20_2120 CDS DPS1 NC_031674.1 455207 456886 D Aspartyl-tRNA synthetase, primarily cytoplasmic; homodimeric enzyme that catalyzes the specific aspartylation of tRNA(Asp); class II aminoacyl tRNA synthetase; binding to its own mRNA may confer autoregulation; shares five highly conserved amino acids with human that when mutated cause leukoencephalopathy characterized by hypomyelination with brain stem and spinal cord involvement and leg spasticity (HBSL); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16113655]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16113655]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12888345]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004815 - aspartate-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004815 - aspartate-tRNA ligase activity [Evidence IDA] [PMID 8263943]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006422 - aspartyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006422 - aspartyl-tRNA aminoacylation [Evidence IDA] [PMID 8263943]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; aspartate--tRNA ligase DPS1 455207..456886 Sugiyamaella lignohabitans 30033997 AWJ20_2121 CDS AWJ20_2121 NC_031674.1 460693 461982 D uncharacterized protein 460693..461982 Sugiyamaella lignohabitans 30033998 AWJ20_2122 CDS CDC25 NC_031674.1 462016 464856 D Ras family guanine nucleotide exchange factor CDC25 462016..464856 Sugiyamaella lignohabitans 30033999 AWJ20_2123 CDS AWJ20_2123 NC_031674.1 466522 467007 R uncharacterized protein complement(466522..467007) Sugiyamaella lignohabitans 30034000 AWJ20_2124 CDS CCS1 NC_031674.1 468365 468910 R Copper chaperone for superoxide dismutase Sod1p; involved in oxidative stress protection; Met-X-Cys-X2-Cys motif within the N-terminal portion is involved in insertion of copper into Sod1p under conditions of copper deprivation; required for regulation of yeast copper genes in response to DNA-damaging agents; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9295278]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11500508]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18977757]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0016532 - superoxide dismutase copper chaperone activity [Evidence IGI,IMP,ISS] [PMID 9295278]; GO_function: GO:0008270 - zinc ion binding [Evidence IBA]; GO_process: GO:0015680 - intracellular copper ion transport [Evidence IMP,ISS] [PMID 9295278]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0019430 - removal of superoxide radicals [Evidence IBA]; GO_process: GO:0006801 - superoxide metabolic process [Evidence IEA]; Ccs1p complement(468365..468910) Sugiyamaella lignohabitans 30034001 AWJ20_2125 CDS IMH1 NC_031674.1 470307 472679 D Protein involved in vesicular transport; mediates transport between an endosomal compartment and the Golgi, contains a Golgi-localization (GRIP) domain that interacts with activated Arl1p-GTP to localize Imh1p to the Golgi; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15077113]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9880327]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 16926193]; GO_process: GO:0000042 - protein targeting to Golgi [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 9880327]; Imh1p 470307..472679 Sugiyamaella lignohabitans 30034002 AWJ20_2126 CDS CDA2 NC_031674.1 472748 473860 R Chitin deacetylase; together with Cda1p involved in the biosynthesis ascospore wall component, chitosan; required for proper rigidity of the ascospore wall; GO_component: GO:0005631 - chitosan layer of spore wall [Evidence ISS] [PMID 8940152]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004099 - chitin deacetylase activity [Evidence IEA]; GO_function: GO:0004099 - chitin deacetylase activity [Evidence IDA,ISS] [PMID 8940152]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA,IMP] [PMID 8940152]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; chitin deacetylase CDA2 complement(472748..473860) Sugiyamaella lignohabitans 30034003 AWJ20_2127 CDS ARA2 NC_031674.1 474181 475200 D NAD-dependent arabinose dehydrogenase; involved in biosynthesis of dehydro-D-arabinono-1,4-lactone; similar to plant L-galactose dehydrogenase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0047816 - D-arabinose 1-dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0045290 - D-arabinose 1-dehydrogenase [NAD(P)+] activity [Evidence IDA,IMP] [PMID 17097644]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0070485 - dehydro-D-arabinono-1,4-lactone biosynthetic process [Evidence IMP] [PMID 17097644]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; D-arabinose 1-dehydrogenase (NAD(P)(+)) ARA2 474181..475200 Sugiyamaella lignohabitans 30034004 AWJ20_2128 CDS AWJ20_2128 NC_031674.1 475553 476314 R uncharacterized protein complement(475553..476314) Sugiyamaella lignohabitans 30034005 AWJ20_2131 CDS SRF1 NC_031674.1 479962 481737 D Regulator of phospholipase D (Spo14p); interacts with Spo14p and regulates its catalytic activity; capable of buffering the toxicity of C16:0 platelet activating factor, a lipid that accumulates intraneuronally in Alzheimer's patients; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IMP] [PMID 21347278]; Srf1p 479962..481737 Sugiyamaella lignohabitans 30034009 AWJ20_2132 CDS CDC53 NC_031674.1 483005 484786 D Cullin; structural protein of SCF complexes (which also contain Skp1p, Cdc34p, Hrt1p and an F-box protein) involved in ubiquitination; SCF promotes the G1-S transition by targeting G1 cyclins and the Cln-CDK inhibitor Sic1p for degradation; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 19882662]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346238]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346239]; GO_component: GO:0031461 - cullin-RING ubiquitin ligase complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IPI] [PMID 16421250]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP,IPI] [PMID 9499404]; GO_function: GO:0061630 - ubiquitin protein ligase activity [Evidence IDA] [PMID 9346238]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 10385629]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 9346239]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 8943317]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 7954792]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 9736614]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; cullin CDC53 483005..484786 Sugiyamaella lignohabitans 30034010 AWJ20_2133 CDS SPO71 NC_031674.1 484899 488738 R Meiosis-specific protein required for spore wall formation; localizes to prospore membrane (PSM) and is required for PSM closure during sporulation; mediates PSM size; interacts with Spo1p and Vps13p and recruits Vps13p to the PSM during sporulation; mutants exhibit reduction in PSM PtdIns-phosphate pools; dispensable for both nuclear divisions during meiosis; contains two PH domains; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24036347]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 22611022]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IEP,IMP] [PMID 9784122]; GO_process: GO:1902657 - protein localization to prospore membrane [Evidence IDA] [PMID 24036347]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Spo71p complement(484899..488738) Sugiyamaella lignohabitans 30034011 AWJ20_2134 CDS ATP5 NC_031674.1 489511 490152 R Subunit 5 of the stator stalk of mitochondrial F1F0 ATP synthase; F1F0 ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; homologous to bovine subunit OSCP (oligomycin sensitivity-conferring protein); phosphorylated; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005753 - mitochondrial proton-transporting ATP synthase complex [Evidence IDA] [PMID 10066811]; GO_component: GO:0000274 - mitochondrial proton-transporting ATP synthase, stator stalk [Evidence IMP,ISS] [PMID 2146269]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IMP] [PMID 7866306]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP] [PMID 15254373]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,ISS] [PMID 2146269]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit 5 complement(489511..490152) Sugiyamaella lignohabitans 30034012 AWJ20_2135 CDS RML2 NC_031674.1 490818 492041 D Mitochondrial ribosomal protein of the large subunit (L2); has similarity to E. coli L2 ribosomal protein; mutant allele (fat21) causes inability to utilize oleate, and induce oleic acid oxidation; may interfere with activity of the Adr1p transcription factor; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9445368]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9445368]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 9079633]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein RML2 490818..492041 Sugiyamaella lignohabitans 30034013 AWJ20_2136 CDS ASG1 NC_031674.1 492244 494664 R Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Asg1p complement(492244..494664) Sugiyamaella lignohabitans 30034014 AWJ20_2137 CDS AWJ20_2137 NC_031674.1 499144 500355 D Putative cysteine synthase; localized to the mitochondrial outer membrane; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004124 - cysteine synthase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]; putative cysteine synthase 499144..500355 Sugiyamaella lignohabitans 30034015 AWJ20_2138 CDS AWJ20_2138 NC_031674.1 502421 504133 D uncharacterized protein 502421..504133 Sugiyamaella lignohabitans 30034016 AWJ20_2139 CDS SYF1 NC_031674.1 504214 506610 R Member of the NineTeen Complex (NTC); that contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; null mutant has splicing defect and arrests in G2/M; relocalizes to the cytosol in response to hypoxia; homologs in human and C. elegans; GO_component: GO:0000974 - Prp19 complex [Evidence IDA] [PMID 11842115]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 11842115]; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0071008 - U2-type post-mRNA release spliceosomal complex [Evidence IDA] [PMID 11105756]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 11105756]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 11842115]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IC] [PMID 11105756]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IDA] [PMID 19617314]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Syf1p complement(504214..506610) Sugiyamaella lignohabitans 30034017 AWJ20_2140 CDS APE1 NC_031674.1 507240 508622 D Vacuolar aminopeptidase yscI; zinc metalloproteinase that belongs to the peptidase family M18; often used as a marker protein in studies of autophagy and cytosol to vacuole targeting (CVT) pathway; protein increases in abundance and relative distribution to cytoplasmic foci increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 1400574]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IDA] [PMID 3882418]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence ISS] [PMID 2651436]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence ISS] [PMID 2689224]; Ape1p 507240..508622 Sugiyamaella lignohabitans 30034019 AWJ20_2141 CDS THP1 NC_031674.1 508767 510092 R Nuclear pore-associated protein; component of TREX-2 complex (Sac3p-Thp1p-Sus1p-Cdc31p) involved in transcription elongation and mRNA export from the nucleus; involved in post-transcriptional tethering of active genes to the nuclear periphery and to non-nascent mRNP; contains a PAM domain implicated in protein-protein binding; GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 12206772]; GO_component: GO:0005643 - nuclear pore [Evidence IDA,IGI] [PMID 12411502]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11139493]; GO_component: GO:0070390 - transcription export complex 2 [Evidence IDA] [PMID 15311284]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12702719]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 12702719]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 11452010]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 18614048]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 12411502]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0071033 - nuclear retention of pre-mRNA at the site of transcription [Evidence IMP] [PMID 18003937]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 18003937]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 11139493]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 17537816]; GO_process: GO:0006810 - transport [Evidence IEA]; Thp1p complement(508767..510092) Sugiyamaella lignohabitans 30034020 AWJ20_2142 CDS AWJ20_2142 NC_031674.1 510271 511653 D uncharacterized protein 510271..511653 Sugiyamaella lignohabitans 30034021 AWJ20_2143 CDS AWJ20_2143 NC_031674.1 512040 512807 R uncharacterized protein complement(512040..512807) Sugiyamaella lignohabitans 30034022 AWJ20_2144 CDS SIT4 NC_031674.1 514387 515328 D Type 2A-related serine-threonine phosphatase; functions in the G1/S transition of the mitotic cycle; regulator of COPII coat dephosphorylation; required for ER to Golgi traffic; interacts with Hrr25p kinase; cytoplasmic and nuclear protein that modulates functions mediated by Pkc1p including cell wall and actin cytoskeleton organization; similar to human PP6; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 1848673]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IMP] [PMID 23864707]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15150670]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 1848673]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 15367655]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 12080055]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 18357452]; GO_process: GO:0016311 - dephosphorylation [Evidence IMP] [PMID 15367655]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 12080055]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IMP] [PMID 12080055]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 15843932]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; type 2A-related serine/threonine-protein phosphatase SIT4 514387..515328 Sugiyamaella lignohabitans 30034023 AWJ20_2145 CDS LPX1 NC_031674.1 517358 518506 R Peroxisomal matrix-localized lipase; required for normal peroxisome morphology; contains a peroxisomal targeting signal type 1 (PTS1) and a lipase motif; peroxisomal import requires the PTS1 receptor, Pex5p and self-interaction; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance; oleic acid inducible; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 12135984]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016298 - lipase activity [Evidence IDA] [PMID 18199283]; GO_function: GO:0016298 - lipase activity [Evidence ISS] [PMID 9200815]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA] [PMID 24187129]; GO_process: GO:0007031 - peroxisome organization [Evidence IEP] [PMID 12135984]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI] [PMID 24187129]; Lpx1p complement(517358..518506) Sugiyamaella lignohabitans 30034024 AWJ20_2146 CDS AWJ20_2146 NC_031674.1 519024 519986 R uncharacterized protein complement(519024..519986) Sugiyamaella lignohabitans 30034025 AWJ20_2147 CDS AWJ20_2147 NC_031674.1 521272 522444 R uncharacterized protein complement(521272..522444) Sugiyamaella lignohabitans 30034026 AWJ20_2148 CDS HXT13 NC_031674.1 523091 524659 R hexose transporter HXT13 complement(523091..524659) Sugiyamaella lignohabitans 30034027 AWJ20_2149 CDS GPI12 NC_031674.1 525656 526498 D ER membrane protein involved in the second step of GPI anchor assembly; the second step is the de-N-acetylation of the N-acetylglucosaminylphosphatidylinositol intermediate; functional homolog of human PIG-Lp; GPI stands for glycosylphosphatidylinositol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence ISS] [PMID 10085243]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000225 - N-acetylglucosaminylphosphatidylinositol deacetylase activity [Evidence IEA]; GO_function: GO:0000225 - N-acetylglucosaminylphosphatidylinositol deacetylase activity [Evidence ISS] [PMID 10085243]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence ISS] [PMID 10085243]; Gpi12p 525656..526498 Sugiyamaella lignohabitans 30034028 AWJ20_2150 CDS AWJ20_2150 NC_031674.1 526666 528402 R uncharacterized protein complement(526666..528402) Sugiyamaella lignohabitans 30034030 AWJ20_2151 CDS YEF3 NC_031674.1 528970 532134 R Translational elongation factor EF-3; member of the ABC superfamily; stimulates EF-1 alpha-dependent binding of aminoacyl-tRNA by the ribosome; normally expressed in zinc deficient cells; HEF3 has a paralog, YEF3, that arose from the whole genome duplication; GO_component: GO:0022626 - cytosolic ribosome [Evidence IPI] [PMID 9544245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9544245]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IGI,ISS] [PMID 9544245]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA]; GO_process: GO:0006414 - translational elongation [Evidence IGI] [PMID 9544245]; translation elongation factor EF-3 complement(528970..532134) Sugiyamaella lignohabitans 30034031 AWJ20_2153 CDS RCK2 NC_031674.1 535972 537381 R serine/threonine protein kinase RCK2 complement(535972..537381) Sugiyamaella lignohabitans 30034033 AWJ20_2154 CDS AWJ20_2154 NC_031674.1 537421 538278 R uncharacterized protein complement(537421..538278) Sugiyamaella lignohabitans 30034034 AWJ20_2155 CDS EMP70 NC_031674.1 541873 543564 D Protein with a role in cellular adhesion and filamentous growth; also endosome-to-vacuole sorting; similar to Tmn3p; member of Transmembrane Nine family of proteins with 9 transmembrane segments; EMP70 has a paralog, TMN2, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 8314797]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20681974]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI,IMP] [PMID 20681974]; GO_process: GO:0016197 - endosomal transport [Evidence IMP] [PMID 20526336]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 18178563]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 18178563]; GO_process: GO:0007034 - vacuolar transport [Evidence IGI] [PMID 20526336]; Emp70p 541873..543564 Sugiyamaella lignohabitans 30034035 AWJ20_2156 CDS EMP70 NC_031674.1 544524 546212 D Protein with a role in cellular adhesion and filamentous growth; also endosome-to-vacuole sorting; similar to Tmn3p; member of Transmembrane Nine family of proteins with 9 transmembrane segments; EMP70 has a paralog, TMN2, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 8314797]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20681974]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI,IMP] [PMID 20681974]; GO_process: GO:0016197 - endosomal transport [Evidence IMP] [PMID 20526336]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 18178563]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 18178563]; GO_process: GO:0007034 - vacuolar transport [Evidence IGI] [PMID 20526336]; Emp70p 544524..546212 Sugiyamaella lignohabitans 30034036 AWJ20_2157 CDS KAR3 NC_031674.1 546281 548509 R Minus-end-directed microtubule motor; functions in mitosis and meiosis, localizes to the spindle pole body and localization is dependent on functional Cik1p, required for nuclear fusion during mating; potential Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 2138512]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000922 - spindle pole [Evidence IDA] [PMID 14562095]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 11729143]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 2138512]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 8106549]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 22734002]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0008569 - minus-end-directed microtubule motor activity [Evidence IDA] [PMID 8041770]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 16107877]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IMP] [PMID 2138512]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IDA,IMP] [PMID 11729143]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IGI] [PMID 9201713]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 14742714]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 16380440]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 19386762]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 2138512]; Kar3p complement(546281..548509) Sugiyamaella lignohabitans 30034037 AWJ20_2158 CDS RRP15 NC_031674.1 548971 549747 D Nucleolar protein; constituent of pre-60S ribosomal particles; required for proper processing of the 27S pre-rRNA at the A3 and B1 sites to yield mature 5.8S and 25S rRNAs; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 15769876]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15769876]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15769876]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp15p 548971..549747 Sugiyamaella lignohabitans 30034038 AWJ20_2159 CDS YAH1 NC_031674.1 550014 550577 R Ferredoxin of the mitochondrial matrix; required for formation of cellular iron-sulfur proteins; involved in heme A biosynthesis; homologous to human adrenodoxin; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 10375636]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016653 - oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor [Evidence IGI,IMP] [PMID 11788607]; GO_process: GO:0006784 - heme a biosynthetic process [Evidence IGI,IMP] [PMID 11788607]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 12970193]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 20534343]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 21944752]; Yah1p complement(550014..550577) Sugiyamaella lignohabitans 30034039 AWJ20_2160 CDS STE6 NC_031674.1 553737 556373 R Plasma membrane ATP-binding cassette (ABC) transporter; required for the export of a-factor, catalyzes ATP hydrolysis coupled to a-factor transport; contains 12 transmembrane domains and two ATP binding domains; expressed only in MATa cells; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8045256]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12374868]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 7679674]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 7679674]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 11389139]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 8626301]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0000770 - peptide pheromone export [Evidence IMP] [PMID 2569166]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette alpha-factor transporter STE6 complement(553737..556373) Sugiyamaella lignohabitans 30034041 AWJ20_2161 CDS OPI3 NC_031674.1 558783 559064 D Methylene-fatty-acyl-phospholipid synthase; catalyzes the last two steps in phosphatidylcholine biosynthesis; also known as phospholipid methyltransferase; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 2445736]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008170 - N-methyltransferase activity [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0080101 - phosphatidyl-N-dimethylethanolamine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0080101 - phosphatidyl-N-dimethylethanolamine N-methyltransferase activity [Evidence IDA,IGI] [PMID 2445736]; GO_function: GO:0080101 - phosphatidyl-N-dimethylethanolamine N-methyltransferase activity [Evidence IMP] [PMID 2684666]; GO_function: GO:0000773 - phosphatidyl-N-methylethanolamine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0000773 - phosphatidyl-N-methylethanolamine N-methyltransferase activity [Evidence IDA,IGI] [PMID 2445736]; GO_function: GO:0000773 - phosphatidyl-N-methylethanolamine N-methyltransferase activity [Evidence IMP] [PMID 2684666]; GO_function: GO:0004608 - phosphatidylethanolamine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IMP] [PMID 23000174]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IDA,IGI] [PMID 2445736]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IMP] [PMID 6337128]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0006644 - phospholipid metabolic process [Evidence IEA]; bifunctional phosphatidyl-N-methylethanolamine N-methyltransferase/phosphatidyl-N-dimethylethanolamine N-methyltransferase 558783..559064 Sugiyamaella lignohabitans 30034042 AWJ20_2162 CDS FRE1 NC_031674.1 559225 561030 R Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low copper and iron levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 7814363]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre1p complement(559225..561030) Sugiyamaella lignohabitans 30034043 AWJ20_2163 CDS COG6 NC_031674.1 561745 563682 D Component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IPI] [PMID 11703943]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20065092]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 11703943]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cog6p 561745..563682 Sugiyamaella lignohabitans 30034044 AWJ20_2164 CDS DET1 NC_031674.1 564464 565045 D acid phosphatase DET1 564464..565045 Sugiyamaella lignohabitans 30034045 AWJ20_2165 CDS DPH1 NC_031674.1 565208 566482 R Protein required for synthesis of diphthamide; required along with Dph2p, Kti11p, Jjj3p, and Dph5p; diphthamide is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); may act in a complex with Dph2p and Kti11p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA,IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 15485916]; Dph1p complement(565208..566482) Sugiyamaella lignohabitans 30034046 AWJ20_2166 CDS SHQ1 NC_031674.1 566854 568209 D Chaperone protein; required for the assembly of box H/ACA snoRNPs and thus for pre-rRNA processing; functions as an RNA mimic; forms a complex with Naf1p and interacts with H/ACA snoRNP components Nhp2p and Cbf5p; homology with known Hsp90p cochaperones; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 12228251]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 19426738]; GO_process: GO:0000493 - box H/ACA snoRNP assembly [Evidence IMP,IPI] [PMID 12228251]; Shq1p 566854..568209 Sugiyamaella lignohabitans 30034047 AWJ20_2169 CDS CDC50 NC_031674.1 571177 572403 D Endosomal protein that interacts with phospholipid flippase Drs2p; interaction with Cdc50p is essential for Drs2p catalytic activity; mutations affect cell polarity and polarized growth; similar to Lem3p; CDC50 has a paralog, YNR048W, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0031902 - late endosome membrane [Evidence IDA] [PMID 12589066]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 15090616]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI] [PMID 15090616]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI] [PMID 16195350]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 16195350]; GO_process: GO:0006886 - intracellular protein transport [Evidence IMP] [PMID 16956384]; GO_process: GO:0045332 - phospholipid translocation [Evidence IGI] [PMID 15090616]; aminophospholipid translocase regulatory protein CDC50 571177..572403 Sugiyamaella lignohabitans 30034050 AWJ20_2170 CDS ERG6 NC_031674.1 573306 574433 D Delta(24)-sterol C-methyltransferase; converts zymosterol to fecosterol in the ergosterol biosynthetic pathway by methylating position C-24; localized to lipid particles, the plasma membrane-associated endoplasmic reticulum, and the mitochondrial outer membrane; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11298754]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9450962]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003838 - sterol 24-C-methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003838 - sterol 24-C-methyltransferase activity [Evidence IDA] [PMID 18563465]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 2677674]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 6363386]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; sterol 24-C-methyltransferase 573306..574433 Sugiyamaella lignohabitans 30034052 AWJ20_2171 CDS HXT6 NC_031674.1 575960 577597 D hexose transporter HXT6 575960..577597 Sugiyamaella lignohabitans 30034053 AWJ20_2172 CDS AGC1 NC_031674.1 578598 579479 D Mitochondrial amino acid transporter; acts both as a glutamate uniporter and as an aspartate-glutamate exchanger; involved in nitrogen metabolism and nitrogen compound biosynthesis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015183 - L-aspartate transmembrane transporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0005313 - L-glutamate transmembrane transporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0015297 - antiporter activity [Evidence IDA] [PMID 14622413]; GO_function: GO:0015292 - uniporter activity [Evidence IDA] [PMID 14622413]; GO_process: GO:0015813 - L-glutamate transport [Evidence IDA] [PMID 14622413]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015810 - aspartate transport [Evidence IDA] [PMID 14622413]; GO_process: GO:0044271 - cellular nitrogen compound biosynthetic process [Evidence IMP] [PMID 14622413]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Agc1p 578598..579479 Sugiyamaella lignohabitans 30034054 AWJ20_2173 CDS FAA2 NC_031674.1 579704 581923 R Medium chain fatty acyl-CoA synthetase; activates imported fatty acids; accepts a wide range of fatty acid chain lengths with a preference for medium chains, C9:0-C13:0; localized to the peroxisome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 8670886]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IEA]; GO_function: GO:0004467 - long-chain fatty acid-CoA ligase activity [Evidence IDA] [PMID 8206942]; GO_function: GO:0031956 - medium-chain fatty acid-CoA ligase activity [Evidence IDA] [PMID 8206942]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0031957 - very long-chain fatty acid-CoA ligase activity [Evidence IGI] [PMID 9988704]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0001676 - long-chain fatty acid metabolic process [Evidence IGI,IMP] [PMID 7962057]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; medium-chain fatty acid-CoA ligase FAA2 complement(579704..581923) Sugiyamaella lignohabitans 30034055 AWJ20_2174 CDS NHP6B NC_031674.1 582911 583297 R High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6B has a paralog, NHP6A, that arose from the whole genome duplication; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3169249]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 7721780]; GO_function: GO:0031491 - nucleosome binding [Evidence ISS] [PMID 11432837]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IGI] [PMID 11287614]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IDA] [PMID 17178828]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI] [PMID 14739928]; GO_process: GO:0001195 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase III promoter [Evidence IDA] [PMID 16407207]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI] [PMID 8946917]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Nhp6bp complement(582911..583297) Sugiyamaella lignohabitans 30034056 AWJ20_2175 CDS ENV9 NC_031674.1 583770 584735 R Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p complement(583770..584735) Sugiyamaella lignohabitans 30034057 AWJ20_2176 CDS DIP5 NC_031674.1 585581 587191 R Dicarboxylic amino acid permease; mediates high-affinity and high-capacity transport of L-glutamate and L-aspartate; also a transporter for Gln, Asn, Ser, Ala, and Gly; relocalizes from plasma membrane to vacuole upon DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Dip5p complement(585581..587191) Sugiyamaella lignohabitans 30034058 AWJ20_2177 CDS RPS23B NC_031674.1 588233 588670 D Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit; required for translational accuracy; homologous to mammalian ribosomal protein S23 and bacterial S12; RPS23B has a paralog, RPS23A, that arose from the whole genome duplication; deletion of both RPS23A and RPS23B is lethal; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 16246728]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IGI,IMP] [PMID 8415737]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IGI,IMP] [PMID 8950190]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S23B 588233..588670 Sugiyamaella lignohabitans 30034059 AWJ20_2178 CDS RRP9 NC_031674.1 589164 590843 R Protein involved in pre-rRNA processing; associated with U3 snRNP; component of small ribosomal subunit (SSU) processosome; ortholog of the human U3-55k protein; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 11081632]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 11105764]; GO_process: GO:0000154 - rRNA modification [Evidence TAS] [PMID 10690410]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence TAS] [PMID 10690410]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp9p complement(589164..590843) Sugiyamaella lignohabitans 30034060 AWJ20_2179 CDS AWJ20_2179 NC_031674.1 593497 595758 R uncharacterized protein complement(593497..595758) Sugiyamaella lignohabitans 30034061 AWJ20_2180 CDS ALK2 NC_031674.1 598692 602078 D protein kinase ALK2 598692..602078 Sugiyamaella lignohabitans 30034063 AWJ20_2181 CDS CKB1 NC_031674.1 605132 606229 D Beta regulatory subunit of casein kinase 2 (CK2); a Ser/Thr protein kinase with roles in cell growth and proliferation; CK2, comprised of CKA1, CKA2, CKB1 and CKB2, has many substrates including transcription factors and all RNA polymerases; GO_component: GO:0034456 - UTP-C complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IEA]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IDA] [PMID 8135547]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IEA]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IMP] [PMID 11827175]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IPI] [PMID 8135547]; GO_function: GO:0030291 - protein serine/threonine kinase inhibitor activity [Evidence IDA] [PMID 18265947]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IDA] [PMID 11551505]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 16607517]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16952051]; GO_process: GO:0045859 - regulation of protein kinase activity [Evidence IEA]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IDA] [PMID 11551505]; GO_process: GO:0006359 - regulation of transcription from RNA polymerase III promoter [Evidence IDA] [PMID 11551505]; casein kinase 2 regulatory subunit CKB1 605132..606229 Sugiyamaella lignohabitans 30034064 AWJ20_2182 CDS JAC1 NC_031674.1 606784 607383 R Specialized J-protein that functions in Fe-S cluster biogenesis; functions with Hsp70 in Fe-S cluster biogenesis in mitochondria; involved in iron metabolism; contains a J domain typical to J-type chaperones; localizes to the mitochondrial matrix; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11278728]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051087 - chaperone binding [Evidence IEA]; GO_function: GO:0051087 - chaperone binding [Evidence IMP] [PMID 11278728]; GO_function: GO:0051087 - chaperone binding [Evidence ISS] [PMID 9813017]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 9813017]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 11278728]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0051259 - protein oligomerization [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Jac1p complement(606784..607383) Sugiyamaella lignohabitans 30034065 AWJ20_2183 CDS HXT13 NC_031674.1 609663 611222 R hexose transporter HXT13 complement(609663..611222) Sugiyamaella lignohabitans 30034066 AWJ20_2184 CDS AWJ20_2184 NC_031674.1 615264 616211 D uncharacterized protein 615264..616211 Sugiyamaella lignohabitans 30034067 AWJ20_2185 CDS YHI9 NC_031674.1 616842 617744 R hypothetical protein; null mutant is defective in unfolded protein response; possibly involved in a membrane regulation metabolic pathway; member of the PhzF superfamily, though most likely not involved in phenazine production; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 16582425]; Yhi9p complement(616842..617744) Sugiyamaella lignohabitans 30034068 AWJ20_2186 CDS HIS6 NC_031674.1 618341 619315 D imidazole-4-carboxamide isomerase HIS6 618341..619315 Sugiyamaella lignohabitans 30034069 AWJ20_2187 CDS RPB3 NC_031674.1 619501 620109 R RNA polymerase II third largest subunit B44; part of central core; similar to prokaryotic alpha subunit; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15520468]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001055 - RNA polymerase II activity [Evidence IDA] [PMID 8288647]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 16537912]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 2685562]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase II core subunit RPB3 complement(619501..620109) Sugiyamaella lignohabitans 30034070 AWJ20_2188 CDS AWJ20_2188 NC_031674.1 621866 623555 R uncharacterized protein complement(join(621866..622651,623514..623555)) Sugiyamaella lignohabitans 30034071 AWJ20_2190 CDS NAT3 NC_031674.1 625411 625941 D Catalytic subunit of the NatB N-terminal acetyltransferase; NatB catalyzes acetylation of the amino-terminal methionine residues of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met; GO_component: GO:0031416 - NatB complex [Evidence IDA] [PMID 12783868]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IMP,ISS] [PMID 10545125]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0017196 - N-terminal peptidyl-methionine acetylation [Evidence IMP] [PMID 10545125]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IGI,IMP] [PMID 12808144]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IGI,IMP] [PMID 12808144]; Nat3p 625411..625941 Sugiyamaella lignohabitans 30034074 AWJ20_2191 CDS AWJ20_2191 NC_031674.1 626823 627266 D 60S ribosomal protein L12 626823..627266 Sugiyamaella lignohabitans 30034075 AWJ20_2192 CDS UBA1 NC_031674.1 628197 631256 R Ubiquitin activating enzyme (E1); involved in ubiquitin-mediated protein degradation and essential for viability; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 7629121]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7629121]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008641 - small protein activating enzyme activity [Evidence IEA]; GO_function: GO:0004839 - ubiquitin activating enzyme activity [Evidence IDA] [PMID 1989885]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 1989885]; E1 ubiquitin-activating protein UBA1 complement(628197..631256) Sugiyamaella lignohabitans 30034076 AWJ20_2194 CDS AWJ20_2194 NC_031674.1 635302 636210 R uncharacterized protein complement(join(635302..635914,636185..636210)) Sugiyamaella lignohabitans 30034078 AWJ20_2196 CDS AWJ20_2196 NC_031674.1 638621 639715 D reverse transcriptase 638621..639715 Sugiyamaella lignohabitans 30034080 AWJ20_2197 CDS POL92 NC_031674.1 641223 644366 R allele of CaO19.8194; polyprotein of L1-like non-LTR retrotransposon Zorro 3 complement(641223..644366) Sugiyamaella lignohabitans 30034081 AWJ20_2199 CDS BAT1 NC_031674.1 648850 649974 D Mitochondrial branched-chain amino acid (BCAA) aminotransferase; preferentially involved in BCAA biosynthesis; homolog of murine ECA39; highly expressed during logarithmic phase and repressed during stationary phase; BAT1 has a paralog, BAT2, that arose from the whole genome duplication; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 8798704]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0052656 - L-isoleucine transaminase activity [Evidence IEA]; GO_function: GO:0052654 - L-leucine transaminase activity [Evidence IEA]; GO_function: GO:0052655 - L-valine transaminase activity [Evidence IEA]; GO_function: GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA,IEA]; GO_function: GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IDA] [PMID 8798704]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IDA,IMP] [PMID 8798704]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IMP] [PMID 8702755]; GO_process: GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]; branched-chain-amino-acid transaminase BAT1 648850..649974 Sugiyamaella lignohabitans 30034083 AWJ20_2200 CDS ZTA1 NC_031674.1 650082 651068 R NADPH-dependent quinone reductase; GFP-tagged protein localizes to the cytoplasm and nucleus; has similarity to E. coli quinone oxidoreductase and to human zeta-crystallin; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0032440 - 2-alkenal reductase [NAD(P)] activity [Evidence IDA] [PMID 21276778]; GO_function: GO:0017091 - AU-rich element binding [Evidence IDA] [PMID 17497241]; GO_function: GO:0017091 - AU-rich element binding [Evidence IDA] [PMID 19007762]; GO_function: GO:0003960 - NADPH:quinone reductase activity [Evidence IEA]; GO_function: GO:0003960 - NADPH:quinone reductase activity [Evidence IDA] [PMID 17497241]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 17497241]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Zta1p complement(650082..651068) Sugiyamaella lignohabitans 30034086 AWJ20_2202 CDS AWJ20_2202 NC_031674.1 653395 655200 R uncharacterized protein complement(653395..655200) Sugiyamaella lignohabitans 30034088 AWJ20_2203 CDS AWJ20_2203 NC_031674.1 657616 658770 R uncharacterized protein complement(657616..658770) Sugiyamaella lignohabitans 30034089 AWJ20_2204 CDS JLP1 NC_031674.1 659778 660935 R Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p complement(659778..660935) Sugiyamaella lignohabitans 30034090 AWJ20_2205 CDS AWJ20_2205 NC_031674.1 662044 663009 D similar to several putative epoxide hydrolases; has match to alpha/beta hydrolase fold; allele of CaO19.6709; putative epoxide hydrolase 662044..663009 Sugiyamaella lignohabitans 30034091 AWJ20_2206 CDS UGA4 NC_031674.1 664660 664944 D GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p 664660..664944 Sugiyamaella lignohabitans 30034092 AWJ20_2207 CDS UGA4 NC_031674.1 665026 666414 D GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p 665026..666414 Sugiyamaella lignohabitans 30034093 AWJ20_2208 CDS GLE2 NC_031674.1 666928 668013 D RNA export factor associated with the nuclear pore complex (NPC); associates with NUP116p; required for polyadenylated RNA export but not for protein import; homologous to S. pombe Rae1p and human RAE1; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15210706]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 8970155]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 9725905]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 8970155]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:2000728 - regulation of mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 15210706]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20098417]; GO_process: GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006810 - transport [Evidence IEA]; RNA export factor GLE2 666928..668013 Sugiyamaella lignohabitans 30034094 AWJ20_2209 CDS CSF1 NC_031674.1 668113 675045 R Protein required for fermentation at low temperature; plays a role in the maturation of secretory proteins; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006113 - fermentation [Evidence IMP] [PMID 10781556]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 19433630]; Csf1p complement(668113..675045) Sugiyamaella lignohabitans 30034095 AWJ20_2210 CDS CSF1 NC_031674.1 675671 678307 R Protein required for fermentation at low temperature; plays a role in the maturation of secretory proteins; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006113 - fermentation [Evidence IMP] [PMID 10781556]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 19433630]; Csf1p complement(675671..678307) Sugiyamaella lignohabitans 30034097 AWJ20_2211 CDS SAC7 NC_031674.1 679109 682111 R GTPase activating protein (GAP) for Rho1p; regulator of a Tor2p-mediated, Rho1p GTPase switch that controls organization of the actin cytoskeleton; negative regulator of the RHO1-PKC1-MAPK cell integrity (CWI) and membrane fluidity homeostasis signaling pathways; potential Cdc28p substrate; SAC7 has a paralog, BAG7, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 23878277]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 9038344]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI] [PMID 9038344]; GO_process: GO:0090038 - negative regulation of protein kinase C signaling [Evidence IMP] [PMID 10625705]; GO_process: GO:0090038 - negative regulation of protein kinase C signaling [Evidence IGI] [PMID 11713681]; GO_process: GO:0090038 - negative regulation of protein kinase C signaling [Evidence IMP] [PMID 12207708]; GO_process: GO:0032321 - positive regulation of Rho GTPase activity [Evidence IDA] [PMID 9038344]; GO_process: GO:0032956 - regulation of actin cytoskeleton organization [Evidence IGI] [PMID 2183030]; GO_process: GO:0032956 - regulation of actin cytoskeleton organization [Evidence IGI] [PMID 9038344]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 10625705]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI] [PMID 12949174]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Sac7p complement(679109..682111) Sugiyamaella lignohabitans 30034098 AWJ20_2212 CDS RVS167 NC_031674.1 685524 686900 R Actin-associated protein with roles in endocytosis and exocytosis; interacts with Rvs161p to regulate actin cytoskeleton, endocytosis, and viability following starvation or osmotic stress; recruited to bud tips by Gyl1p and Gyp5p during polarized growth; homolog of mammalian amphiphysin; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10393809]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 16239147]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 10393809]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0008092 - cytoskeletal protein binding [Evidence IPI,ISS] [PMID 10388809]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20610658]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IMP] [PMID 8590801]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0060988 - lipid tube assembly [Evidence IDA] [PMID 20610658]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI,IPI] [PMID 15802519]; amphiphysin complement(685524..686900) Sugiyamaella lignohabitans 30034099 AWJ20_2213 CDS UTP10 NC_031674.1 690120 694215 R Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; mutant has increased aneuploidy tolerance; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 17652137]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17652137]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 17652137]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 15489292]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Utp10p complement(join(690120..690135,690224..694215)) Sugiyamaella lignohabitans 30034100 AWJ20_2214 CDS AWJ20_2214 NC_031674.1 696342 697679 D uncharacterized protein 696342..697679 Sugiyamaella lignohabitans 30034101 AWJ20_2215 CDS ATG11 NC_031674.1 698523 701360 D autophagy protein ATG11 698523..701360 Sugiyamaella lignohabitans 30034102 AWJ20_2216 CDS KES1 NC_031674.1 703797 704744 D One of seven members of the yeast oxysterol binding protein family; involved in negative regulation of Sec14p-dependent Golgi complex secretory functions, peripheral membrane protein that localizes to the Golgi complex; KES1 has a paralog, HES1, that arose from the whole genome duplication; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 11916983]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8978672]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11916983]; GO_function: GO:0008289 - lipid binding [Evidence IDA,IMP] [PMID 20008566]; GO_function: GO:0008142 - oxysterol binding [Evidence ISS] [PMID 11238399]; GO_function: GO:0008142 - oxysterol binding [Evidence IMP,IPI] [PMID 16136145]; GO_function: GO:0070300 - phosphatidic acid binding [Evidence IDA] [PMID 20729555]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IMP,IPI] [PMID 11916983]; GO_function: GO:0070273 - phosphatidylinositol-4-phosphate binding [Evidence IDA] [PMID 20729555]; GO_function: GO:0015248 - sterol transporter activity [Evidence IDA,IMP] [PMID 20008566]; GO_process: GO:0035621 - ER to Golgi ceramide transport [Evidence IMP] [PMID 24213531]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 15173322]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17004323]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IGI] [PMID 17004323]; GO_process: GO:0010922 - positive regulation of phosphatase activity [Evidence IDA] [PMID 21295699]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IGI] [PMID 11916983]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IGI] [PMID 8978672]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; GO_process: GO:0015918 - sterol transport [Evidence IDA,IGI] [PMID 16585271]; GO_process: GO:0015918 - sterol transport [Evidence IDA,IMP] [PMID 20008566]; oxysterol-binding protein KES1 703797..704744 Sugiyamaella lignohabitans 30034103 AWJ20_2217 CDS NHP6B NC_031674.1 708842 709147 D High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6B has a paralog, NHP6A, that arose from the whole genome duplication; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3169249]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 7721780]; GO_function: GO:0031491 - nucleosome binding [Evidence ISS] [PMID 11432837]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IGI] [PMID 11287614]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IDA] [PMID 17178828]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI] [PMID 14739928]; GO_process: GO:0001195 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase III promoter [Evidence IDA] [PMID 16407207]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI] [PMID 8946917]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Nhp6bp 708842..709147 Sugiyamaella lignohabitans 30034104 AWJ20_2218 CDS UBP16 NC_031674.1 709876 712212 R Deubiquitinating enzyme anchored to the outer mitochondrial membrane; probably not important for general mitochondrial functioning, but may perform a more specialized function at mitochondria; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 8982460]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 12914939]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence TAS] [PMID 8982460]; GO_process: GO:0016579 - protein deubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp16p complement(709876..712212) Sugiyamaella lignohabitans 30034105 AWJ20_2219 CDS AWJ20_2219 NC_031674.1 713753 714229 D potential heme/steroid binding protein; similar to A. thaliana F17I14_130; allele of CaO19.4522; putative heme/steroid binding protein 713753..714229 Sugiyamaella lignohabitans 30034106 AWJ20_2220 CDS AWJ20_2220 NC_031674.1 717982 720456 D RNAPII degradation factor (predicted) 717982..720456 Sugiyamaella lignohabitans 30034108 AWJ20_2221 CDS CPA1 NC_031674.1 720792 722135 R Small subunit of carbamoyl phosphate synthetase; carbamoyl phosphate synthetase catalyzes a step in the synthesis of citrulline, an arginine precursor; translationally regulated by an attenuator peptide encoded by YOR302W within the CPA1 mRNA 5'-leader; GO_component: GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IDA] [PMID 206535]; GO_component: GO:0005951 - carbamoyl-phosphate synthase complex [Evidence ISS] [PMID 6086650]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IMP] [PMID 6086650]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 8626695]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IMP] [PMID 9290206]; GO_process: GO:0070409 - carbamoyl phosphate biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006543 - glutamine catabolic process [Evidence IEA]; carbamoyl-phosphate synthase (glutamine-hydrolyzing) CPA1 complement(720792..722135) Sugiyamaella lignohabitans 30034109 AWJ20_2222 CDS DUS4 NC_031674.1 724509 725435 R Dihydrouridine synthase; member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus3p; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence ISS] [PMID 12003496]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IMP] [PMID 14970222]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0002943 - tRNA dihydrouridine synthesis [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence ISS] [PMID 12003496]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 14970222]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Dus4p complement(724509..725435) Sugiyamaella lignohabitans 30034110 AWJ20_2223 CDS AWJ20_2223 NC_031674.1 726285 727235 D uncharacterized protein 726285..727235 Sugiyamaella lignohabitans 30034111 AWJ20_2224 CDS ATG9 NC_031674.1 727652 728827 D autophagy protein ATG9 727652..728827 Sugiyamaella lignohabitans 30034112 AWJ20_2225 CDS NOP14 NC_031674.1 729549 732047 R Nucleolar protein; forms a complex with Noc4p that mediates maturation and nuclear export of 40S ribosomal subunits; also present in the small subunit processome complex, which is required for processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030692 - Noc4p-Nop14p complex [Evidence IPI] [PMID 12446671]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11694595]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 11694595]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop14p complement(729549..732047) Sugiyamaella lignohabitans 30034113 AWJ20_2226 CDS mus7 NC_031674.1 734402 738736 R DNA repair protein Mus7/Mms22 complement(734402..738736) Sugiyamaella lignohabitans 30034114 AWJ20_2227 CDS CLD1 NC_031674.1 741159 742592 D Mitochondrial cardiolipin-specific phospholipase; functions upstream of Taz1p to generate monolyso-cardiolipin; transcription increases upon genotoxic stress; involved in restricting Ty1 transposition; has homology to mammalian CGI-58; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 23637464]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19244244]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004623 - phospholipase A2 activity [Evidence IDA,IMP] [PMID 19244244]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0035965 - cardiolipin acyl-chain remodeling [Evidence IMP] [PMID 19244244]; GO_process: GO:0035965 - cardiolipin acyl-chain remodeling [Evidence IMP] [PMID 23637464]; GO_process: GO:0032048 - cardiolipin metabolic process [Evidence IDA,IGI] [PMID 19244244]; Cld1p 741159..742592 Sugiyamaella lignohabitans 30034115 AWJ20_2228 CDS AWJ20_2228 NC_031674.1 742913 743299 D NADP(+)-dependent serine dehydrogenase and carbonyl reductase; acts on serine, L-allo-threonine, and other 3-hydroxy acids; green fluorescent protein fusion protein localizes to the cytoplasm and nucleus; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 18630881]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_function: GO:0031132 - serine 3-dehydrogenase activity [Evidence IDA] [PMID 12535615]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IC] [PMID 12535615]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; oxidoreductase 742913..743299 Sugiyamaella lignohabitans 30034116 AWJ20_2229 CDS AWJ20_2229 NC_031674.1 743406 743729 D NADP(+)-dependent serine dehydrogenase and carbonyl reductase; acts on serine, L-allo-threonine, and other 3-hydroxy acids; green fluorescent protein fusion protein localizes to the cytoplasm and nucleus; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 18630881]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_function: GO:0031132 - serine 3-dehydrogenase activity [Evidence IDA] [PMID 12535615]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IC] [PMID 12535615]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; oxidoreductase 743406..743729 Sugiyamaella lignohabitans 30034117 AWJ20_2230 CDS AWJ20_2230 NC_031674.1 744276 745268 R uncharacterized protein complement(744276..745268) Sugiyamaella lignohabitans 30034119 AWJ20_2231 CDS FMP41 NC_031674.1 745659 746543 D hypothetical protein; GFP-fusion protein is induced in response to the DNA-damaging agent MMS; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Fmp41p 745659..746543 Sugiyamaella lignohabitans 30034120 AWJ20_2232 CDS AWJ20_2232 NC_031674.1 746887 747297 R uncharacterized protein complement(746887..747297) Sugiyamaella lignohabitans 30034121 AWJ20_2233 CDS ASG1 NC_031674.1 748030 750690 D Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Asg1p 748030..750690 Sugiyamaella lignohabitans 30034122 AWJ20_2234 CDS HOL1 NC_031674.1 750899 752398 R Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p complement(750899..752398) Sugiyamaella lignohabitans 30034123 AWJ20_2235 CDS AWJ20_2235 NC_031674.1 753434 754681 D uncharacterized protein 753434..754681 Sugiyamaella lignohabitans 30034124 AWJ20_2236 CDS CYB2 NC_031674.1 754829 756262 R Cytochrome b2 (L-lactate cytochrome-c oxidoreductase); component of the mitochondrial intermembrane space, required for lactate utilization; expression is repressed by glucose and anaerobic conditions; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 3004948]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IDA] [PMID 3004948]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006089 - lactate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cyb2p complement(754829..756262) Sugiyamaella lignohabitans 30034125 AWJ20_2237 CDS AWJ20_2237 NC_031674.1 761325 762437 D protein MET30 761325..762437 Sugiyamaella lignohabitans 30034126 AWJ20_2238 CDS ANT1 NC_031674.1 762866 763429 R Peroxisomal adenine nucleotide transporter; involved in beta-oxidation of medium-chain fatty acid; required for peroxisome proliferation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 11566870]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0000295 - adenine nucleotide transmembrane transporter activity [Evidence IMP] [PMID 11390660]; GO_function: GO:0000295 - adenine nucleotide transmembrane transporter activity [Evidence IDA] [PMID 11566870]; GO_process: GO:0015867 - ATP transport [Evidence IDA] [PMID 11566870]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IGI,IMP] [PMID 11390660]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IGI,IMP] [PMID 11566870]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IMP] [PMID 11390660]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ant1p complement(762866..763429) Sugiyamaella lignohabitans 30034127 AWJ20_2239 CDS AWJ20_2239 NC_031674.1 763913 764125 R uncharacterized protein complement(763913..764125) Sugiyamaella lignohabitans 30034128 AWJ20_2240 CDS ICL1 NC_031674.1 765230 766144 D Isocitrate lyase; catalyzes the formation of succinate and glyoxylate from isocitrate, a key reaction of the glyoxylate cycle; expression of ICL1 is induced by growth on ethanol and repressed by growth on glucose; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IEA,IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IMP,ISS] [PMID 1551398]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA,IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence TAS] [PMID 11092862]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; isocitrate lyase 1 765230..766144 Sugiyamaella lignohabitans 30034130 AWJ20_2241 CDS AWJ20_2241 NC_031674.1 766804 768255 D uncharacterized protein 766804..768255 Sugiyamaella lignohabitans 30034131 AWJ20_2242 CDS AWJ20_2242 NC_031674.1 768910 770523 D carboxylesterase-lipase family protein 768910..770523 Sugiyamaella lignohabitans 30034132 AWJ20_2243 CDS CLB3 NC_031674.1 770734 771948 R B-type cyclin CLB3 complement(770734..771948) Sugiyamaella lignohabitans 30034133 AWJ20_2244 CDS TNA1 NC_031674.1 782255 783319 D High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p 782255..783319 Sugiyamaella lignohabitans 30034134 AWJ20_2245 CDS AWJ20_2245 NC_031674.1 783493 783963 R uncharacterized protein complement(783493..783963) Sugiyamaella lignohabitans 30034135 AWJ20_2246 CDS TAZ1 NC_031674.1 784705 785826 D Lyso-phosphatidylcholine acyltransferase; required for normal phospholipid content of mitochondrial membranes; major determinant of the final acyl chain composition of the mitochondrial-specific phospholipid cardiolipin; mutations in human ortholog tafazzin cause Barth syndrome, a rare X-linked disease characterized by skeletal and cardiomyopathy and bouts of cyclic neutropenia; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16135531]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 16880272]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16880272]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15304507]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15588229]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0047184 - 1-acylglycerophosphocholine O-acyltransferase activity [Evidence IEA]; GO_function: GO:0047184 - 1-acylglycerophosphocholine O-acyltransferase activity [Evidence IMP] [PMID 15588229]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0035965 - cardiolipin acyl-chain remodeling [Evidence IMP] [PMID 14651618]; GO_process: GO:0032048 - cardiolipin metabolic process [Evidence IMP] [PMID 14651618]; GO_process: GO:0007007 - inner mitochondrial membrane organization [Evidence IMP] [PMID 14651618]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042775 - mitochondrial ATP synthesis coupled electron transport [Evidence IMP] [PMID 15304507]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 14651618]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 15588229]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 16135531]; Taz1p 784705..785826 Sugiyamaella lignohabitans 30034136 AWJ20_2247 CDS HFI1 NC_031674.1 786879 787613 D Adaptor protein required for structural integrity of the SAGA complex; a histone acetyltransferase-coactivator complex that is involved in global regulation of gene expression through acetylation and transcription functions; GO_component: GO:0005671 - Ada2/Gcn5/Ada3 transcription activator complex [Evidence IDA,IPI] [PMID 9154821]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0070461 - SAGA-type complex [Evidence IEA]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IMP] [PMID 10048020]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IMP,IPI] [PMID 9154821]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9154821]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hfi1p 786879..787613 Sugiyamaella lignohabitans 30034137 AWJ20_2248 CDS HFI1 NC_031674.1 787761 788573 D Adaptor protein required for structural integrity of the SAGA complex; a histone acetyltransferase-coactivator complex that is involved in global regulation of gene expression through acetylation and transcription functions; GO_component: GO:0005671 - Ada2/Gcn5/Ada3 transcription activator complex [Evidence IDA,IPI] [PMID 9154821]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0070461 - SAGA-type complex [Evidence IEA]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IMP] [PMID 10048020]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IMP,IPI] [PMID 9154821]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9154821]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hfi1p 787761..788573 Sugiyamaella lignohabitans 30034138 AWJ20_2249 CDS AWJ20_2249 NC_031674.1 788880 789293 R uncharacterized protein complement(788880..789293) Sugiyamaella lignohabitans 30034139 AWJ20_2250 CDS AEP3 NC_031674.1 789627 792329 D Pentatricopeptide repeat-containing protein At1g63130, mitochondrial 789627..792329 Sugiyamaella lignohabitans 30034141 AWJ20_2251 CDS ROX1 NC_031674.1 801844 804561 D Heme-dependent repressor of hypoxic genes; mediates aerobic transcriptional repression of hypoxia induced genes such as COX5b and CYC7; repressor function regulated through decreased promoter occupancy in response to oxidative stress; contains an HMG domain that is responsible for DNA bending activity; involved in the hyperosmotic stress resistance; GO_component: GO:0000790 - nuclear chromatin [Evidence IC] [PMID 10446242]; GO_component: GO:0000790 - nuclear chromatin [Evidence IC] [PMID 10487921]; GO_component: GO:0000790 - nuclear chromatin [Evidence IC] [PMID 7565763]; GO_component: GO:0000790 - nuclear chromatin [Evidence IC] [PMID 8413209]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 10446242]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 7565763]; GO_function: GO:0001078 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription [Evidence IMP] [PMID 10446242]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IMP] [PMID 14665463]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 10446242]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 10487921]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 8413209]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10446242]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10487921]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 16835445]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 2546055]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 2847035]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3062365]; GO_process: GO:0097201 - negative regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IMP] [PMID 21299653]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rox1p 801844..804561 Sugiyamaella lignohabitans 30034142 AWJ20_2252 CDS VTI1 NC_031674.1 805065 805475 R Protein involved in cis-Golgi membrane traffic; v-SNARE that interacts with two t-SNARES, Sed5p and Pep12p; required for multiple vacuolar sorting pathways; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031201 - SNARE complex [Evidence IPI] [PMID 10397773]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 9398683]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 19805279]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 9199167]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 9398683]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 10385523]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11739407]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Vti1p complement(805065..805475) Sugiyamaella lignohabitans 30034143 AWJ20_2253 CDS AWJ20_2253 NC_031674.1 805559 805786 R uncharacterized protein complement(805559..805786) Sugiyamaella lignohabitans 30034144 AWJ20_2254 CDS AWJ20_2254 NC_031674.1 806909 808876 D Peroxisomal biogenesis factor 8 806909..808876 Sugiyamaella lignohabitans 30034145 AWJ20_2255 CDS MMM1 NC_031674.1 808942 810183 R ERMES complex subunit MMM1 complement(808942..810183) Sugiyamaella lignohabitans 30034146 AWJ20_2256 CDS KRI1 NC_031674.1 810952 812676 D Essential nucleolar protein required for 40S ribosome biogenesis; associate with snR30; physically and functionally interacts with Krr1p; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 22180534]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11027267]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11027267]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Kri1p 810952..812676 Sugiyamaella lignohabitans 30034147 AWJ20_2257 CDS ARP4 NC_031674.1 812915 814231 R Nuclear actin-related protein involved in chromatin remodeling; component of chromatin-remodeling enzyme complexes; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10436015]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10911987]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11011149]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10436015]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 10911987]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 16088870]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 10911987]; GO_function: GO:0031493 - nucleosomal histone binding [Evidence IDA] [PMID 10911987]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 12353039]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15610740]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006325 - chromatin organization [Evidence IMP,IPI] [PMID 10436015]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10911987]; GO_process: GO:0051382 - kinetochore assembly [Evidence IMP] [PMID 17452364]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 10911987]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 8598290]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Arp4p complement(812915..814231) Sugiyamaella lignohabitans 30034148 AWJ20_2258 CDS MIC60 NC_031674.1 815365 817166 D Component of the MICOS complex; MICOS (formerly MINOS or MitOS) is a mitochondrial inner membrane complex that extends into the intermembrane space and has a role in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane; Mic60p is also involved in import of intermembrane space (IMS) proteins, probably by positioning Mia40p relative to the TOM complex to receive incoming proteins; ortholog of mammalian mitofilin; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21944719]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21987634]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 22009199]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030061 - mitochondrial crista [Evidence IDA] [PMID 19528297]; GO_component: GO:0044284 - mitochondrial crista junction [Evidence IDA] [PMID 22009199]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 19528297]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 19528297]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 21944719]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 21987634]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 22009199]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP,IPI] [PMID 21944719]; Mic60p join(815365..815371,815470..817166) Sugiyamaella lignohabitans 30034149 AWJ20_2259 CDS PAP2 NC_031674.1 817387 819852 R Non-canonical poly(A) polymerase; involved in nuclear RNA degradation as a component of TRAMP; catalyzes polyadenylation of hypomodified tRNAs, and snoRNA and rRNA precursors; required for mRNA surveillance and maintenance of genome integrity, serving as a link between RNA and DNA metabolism; overlapping but non-redundant functions with Trf5p; relocalizes to cytosol in response to hypoxia; PAP2 has a paralog, TRF5, that arose from the whole genome duplication; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15828860]; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15935758]; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15935759]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16541108]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10066793]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0051575 - 5'-deoxyribose-5-phosphate lyase activity [Evidence IDA,IMP] [PMID 17983848]; GO_function: GO:0034459 - ATP-dependent 3'-5' RNA helicase activity [Evidence IDA] [PMID 22532666]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA] [PMID 12062100]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IMP,ISS] [PMID 15828860]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA] [PMID 15935758]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA,IMP] [PMID 15935759]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA,IMP] [PMID 16260630]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA,IGI] [PMID 16374505]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IGI,IMP] [PMID 16373491]; GO_process: GO:0006284 - base-excision repair [Evidence IGI,IMP] [PMID 17983848]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0071044 - histone mRNA catabolic process [Evidence IGI] [PMID 17179095]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IGI] [PMID 15145828]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IDA,IMP] [PMID 15828860]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IDA] [PMID 15935758]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IGI] [PMID 15935759]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IGI] [PMID 16373491]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IGI] [PMID 16374505]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IMP] [PMID 16431988]; GO_process: GO:0045910 - negative regulation of DNA recombination [Evidence IMP] [PMID 23762389]; GO_process: GO:0071031 - nuclear mRNA surveillance of mRNA 3'-end processing [Evidence IGI] [PMID 17410208]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IGI,IMP] [PMID 15935759]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IMP] [PMID 16973436]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IMP] [PMID 18007593]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IMP] [PMID 18591258]; GO_process: GO:0071040 - nuclear polyadenylation-dependent antisense transcript catabolic process [Evidence IMP] [PMID 18022365]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IGI] [PMID 16373491]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IGI,IMP] [PMID 15935758]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 16431988]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IGI] [PMID 16541108]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 18007593]; GO_process: GO:0071037 - nuclear polyadenylation-dependent snRNA catabolic process [Evidence IMP] [PMID 15935758]; GO_process: GO:0071037 - nuclear polyadenylation-dependent snRNA catabolic process [Evidence IMP] [PMID 16431988]; GO_process: GO:0071036 - nuclear polyadenylation-dependent snoRNA catabolic process [Evidence IGI,IMP] [PMID 15935758]; GO_process: GO:0071036 - nuclear polyadenylation-dependent snoRNA catabolic process [Evidence IGI] [PMID 16373491]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IGI] [PMID 15145828]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15935758]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IMP] [PMID 16431988]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IMP] [PMID 18456844]; GO_process: GO:0071047 - polyadenylation-dependent mRNA catabolic process [Evidence IMP] [PMID 19369424]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IGI] [PMID 16373491]; GO_process: GO:0071050 - snoRNA polyadenylation [Evidence IGI] [PMID 18951092]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 22319136]; non-canonical poly(A) polymerase PAP2 complement(817387..819852) Sugiyamaella lignohabitans 30034150 AWJ20_2260 CDS IKS1 NC_031674.1 821500 823359 D protein kinase IKS1 821500..823359 Sugiyamaella lignohabitans 30034152 AWJ20_2261 CDS VPS21 NC_031674.1 823599 824246 R Endosomal Rab family GTPase; required for endocytic transport and sorting of vacuolar hydrolases; required for endosomal localization of the CORVET complex; required with YPT52 for MVB biogenesis and sorting; involved in autophagy and ionic stress tolerance; geranylgeranylation required for membrane association; protein abundance increases in response to DNA replication stress; mammalian Rab5 homolog; VPS21 has a paralog, YPT53, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0005770 - late endosome [Evidence IMP] [PMID 11872141]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 8163546]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 22748138]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 23612966]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8163546]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 22748138]; GO_process: GO:0036258 - multivesicular body assembly [Evidence IGI] [PMID 22748138]; GO_process: GO:0036010 - protein localization to endosome [Evidence IGI] [PMID 23264632]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 8163546]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 1493335]; Rab family GTPase VPS21 complement(823599..824246) Sugiyamaella lignohabitans 30034153 AWJ20_2262 CDS TAE1 NC_031674.1 826242 826967 R AdoMet-dependent proline methyltransferase; catalyzes the dimethylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues; has a role in protein synthesis; fusion protein localizes to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 20481588]; GO_function: GO:0071885 - N-terminal protein N-methyltransferase activity [Evidence IDA,IMP] [PMID 20481588]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0018016 - N-terminal peptidyl-proline dimethylation [Evidence IDA,IMP] [PMID 20481588]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI,IMP] [PMID 19055778]; GO_process: GO:0032259 - methylation [Evidence IEA]; Tae1p complement(826242..826967) Sugiyamaella lignohabitans 30034154 AWJ20_2263 CDS SEC61 NC_031674.1 829631 830581 D Conserved ER protein translocation channel; essential subunit of Sec61 complex (Sec61p, Sbh1p, and Sss1p); forms channel for SRP-dependent protein import; with Sec63 complex allows SRP-independent protein import into ER; involved in posttranslational soluble protein import into the ER, ERAD of soluble substrates, and misfolded soluble protein export from the ER; GO_component: GO:0005784 - Sec61 translocon complex [Evidence IDA] [PMID 8612571]; GO_component: GO:0005784 - Sec61 translocon complex [Evidence IDA] [PMID 9252322]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IMP] [PMID 1550957]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IDA] [PMID 9252322]; GO_function: GO:0015197 - peptide transporter activity [Evidence IMP] [PMID 10758167]; GO_function: GO:0005048 - signal sequence binding [Evidence IDA] [PMID 12134063]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 19696741]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 24314051]; GO_process: GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 11076036]; GO_process: GO:0044743 - intracellular protein transmembrane import [Evidence IMP] [PMID 24314051]; GO_process: GO:0070843 - misfolded protein transport [Evidence IMP] [PMID 24314051]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 7758110]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IDA] [PMID 9252322]; GO_process: GO:0031204 - posttranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 9843581]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 10635318]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 9303298]; GO_process: GO:0006810 - transport [Evidence IEA]; translocon subunit SEC61 829631..830581 Sugiyamaella lignohabitans 30034155 AWJ20_2264 CDS MAK5 NC_031674.1 831318 833534 D Essential nucleolar protein; putative DEAD-box RNA helicase required for maintenance of M1 dsRNA virus; involved in biogenesis of large (60S) ribosomal subunits; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 13680366]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 7754712]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 13680366]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 13680366]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 13680366]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 7739558]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Mak5p 831318..833534 Sugiyamaella lignohabitans 30034156 AWJ20_2265 CDS SUP45 NC_031674.1 833707 835023 R Polypeptide release factor (eRF1) in translation termination; mutant form acts as a recessive omnipotent suppressor; methylated by Mtq2p-Trm112p in ternary complex eRF1-eRF3-GTP; mutation of methylation site confers resistance to zymocin; has a role in cytokinesis through interaction with Mlc1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23451152]; GO_component: GO:0005829 - cytosol [Evidence IPI] [PMID 1474892]; GO_component: GO:0018444 - translation release factor complex [Evidence IDA] [PMID 7556078]; GO_function: GO:0003747 - translation release factor activity [Evidence IDA] [PMID 20947765]; GO_function: GO:0016149 - translation release factor activity, codon specific [Evidence IEA]; GO_function: GO:0016149 - translation release factor activity, codon specific [Evidence IMP,ISS] [PMID 9182990]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 23109428]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IGI,IMP] [PMID 18724935]; GO_process: GO:0006415 - translational termination [Evidence IDA] [PMID 20947765]; GO_process: GO:0006415 - translational termination [Evidence IMP,ISS] [PMID 9182990]; translation termination factor eRF1 complement(833707..835023) Sugiyamaella lignohabitans 30034157 AWJ20_2266 CDS STE24 NC_031674.1 835905 837179 R Highly conserved zinc metalloprotease; functions in two steps of a-factor maturation, C-terminal CAAX proteolysis and the first step of N-terminal proteolytic processing; contains multiple transmembrane spans; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11581258]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IMP] [PMID 18923140]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA] [PMID 11581258]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IMP,ISS] [PMID 9065405]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0071586 - CAAX-box protein processing [Evidence IMP] [PMID 9065405]; GO_process: GO:0007323 - peptide pheromone maturation [Evidence IDA] [PMID 11581258]; GO_process: GO:0007323 - peptide pheromone maturation [Evidence IMP] [PMID 9065405]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; Ste24p complement(835905..837179) Sugiyamaella lignohabitans 30034158 AWJ20_2267 CDS MUP1 NC_031674.1 838466 840064 R High affinity methionine permease; integral membrane protein with 13 putative membrane-spanning regions; also involved in cysteine uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 8893857]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000102 - L-methionine secondary active transmembrane transporter activity [Evidence IDA] [PMID 8893857]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0042883 - cysteine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0044690 - methionine import [Evidence IGI,IMP] [PMID 8893857]; GO_process: GO:0015821 - methionine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0000101 - sulfur amino acid transport [Evidence IMP] [PMID 8893857]; GO_process: GO:0006810 - transport [Evidence IEA]; Mup1p complement(838466..840064) Sugiyamaella lignohabitans 30034159 AWJ20_2268 CDS AWJ20_2268 NC_031674.1 842283 843428 D uncharacterized protein 842283..843428 Sugiyamaella lignohabitans 30034160 AWJ20_2269 CDS SDS3 NC_031674.1 847646 849001 D Component of the Rpd3L histone deacetylase complex; required for its structural integrity and catalytic activity, involved in transcriptional silencing and required for sporulation; relocalizes to the cytosol in response to hypoxia; cells defective in SDS3 display pleiotropic phenotypes; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16314178]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IMP] [PMID 11024051]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006342 - chromatin silencing [Evidence IGI,IMP] [PMID 11024051]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP,IPI] [PMID 11024051]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP] [PMID 16314178]; GO_process: GO:0061188 - negative regulation of chromatin silencing at rDNA [Evidence IMP] [PMID 16286008]; GO_process: GO:0061186 - negative regulation of chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 19372273]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17210643]; GO_process: GO:0061408 - positive regulation of transcription from RNA polymerase II promoter in response to heat stress [Evidence IMP] [PMID 20398213]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sds3p 847646..849001 Sugiyamaella lignohabitans 30034161 AWJ20_2270 CDS KTR5 NC_031674.1 850608 852578 D Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family; KTR5 has a paralog, KTR7, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence ISS] [PMID 9090056]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 9090056]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IC] [PMID 9090056]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; Ktr5p 850608..852578 Sugiyamaella lignohabitans 30034163 AWJ20_2271 CDS RPN4 NC_031674.1 853112 854551 R stress-regulated transcription factor RPN4 complement(853112..854551) Sugiyamaella lignohabitans 30034164 AWJ20_2272 CDS RAD3 NC_031674.1 857137 859443 D 5' to 3' DNA helicase; involved in nucleotide excision repair and transcription; subunit of RNA polII initiation factor TFIIH and of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPD protein; mutant has aneuploidy tolerance; protein abundance increases in response to DNA replication stress; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 14500720]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IDA] [PMID 8855246]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IDA] [PMID 2827162]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 8132553]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0033683 - nucleotide-excision repair, DNA incision [Evidence IDA] [PMID 8631896]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0045951 - positive regulation of mitotic recombination [Evidence IMP] [PMID 24189665]; GO_process: GO:0000019 - regulation of mitotic recombination [Evidence IMP] [PMID 10713167]; GO_process: GO:0000019 - regulation of mitotic recombination [Evidence IMP] [PMID 9799251]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0010525 - regulation of transposition, RNA-mediated [Evidence IMP] [PMID 10713167]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit RAD3 857137..859443 Sugiyamaella lignohabitans 30034165 AWJ20_2273 CDS AMD2 NC_031674.1 860935 862557 D Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; Amd2p 860935..862557 Sugiyamaella lignohabitans 30034166 AWJ20_2274 CDS HOL1 NC_031674.1 862786 864387 R Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p complement(862786..864387) Sugiyamaella lignohabitans 30034167 AWJ20_2275 CDS AWJ20_2275 NC_031674.1 867187 867699 D uncharacterized protein 867187..867699 Sugiyamaella lignohabitans 30034168 AWJ20_2276 CDS CTF4 NC_031674.1 867921 870398 R chromatin-binding protein CTF4 complement(867921..870398) Sugiyamaella lignohabitans 30034169 AWJ20_2277 CDS AWJ20_2277 NC_031674.1 870960 871739 D uncharacterized protein 870960..871739 Sugiyamaella lignohabitans 30034170 AWJ20_2278 CDS AWJ20_2278 NC_031674.1 871938 873827 R uncharacterized protein complement(871938..873827) Sugiyamaella lignohabitans 30034171 AWJ20_2279 CDS AWJ20_2279 NC_031674.1 875950 877872 R uncharacterized protein complement(875950..877872) Sugiyamaella lignohabitans 30034172 AWJ20_2280 CDS TMT1 NC_031674.1 880201 881082 D Trans-aconitate methyltransferase; cytosolic enzyme that catalyzes the methyl esterification of 3-isopropylmalate, an intermediate of the leucine biosynthetic pathway, and trans-aconitate, which inhibits the citric acid cycle; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11695919]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0046547 - trans-aconitate 3-methyltransferase activity [Evidence IEA]; GO_function: GO:0046547 - trans-aconitate 3-methyltransferase activity [Evidence IDA] [PMID 11695919]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032259 - methylation [Evidence IEA]; Tmt1p 880201..881082 Sugiyamaella lignohabitans 30034174 AWJ20_2281 CDS HST2 NC_031674.1 881240 882298 R Cytoplasmic NAD(+)-dependent protein deacetylase; member of the silencing information regulator 2 (Sir2) family of NAD(+)-dependent protein deacetylases; modulates nucleolar (rDNA) and telomeric silencing; possesses NAD(+)-dependent histone deacetylase activity in vitro; contains a nuclear export signal (NES); function regulated by its nuclear export; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11226170]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17110954]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0070403 - NAD+ binding [Evidence IEA]; GO_function: GO:0017136 - NAD-dependent histone deacetylase activity [Evidence IDA] [PMID 10811920]; GO_function: GO:0017136 - NAD-dependent histone deacetylase activity [Evidence IMP] [PMID 10841563]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 11226170]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 16051752]; GO_process: GO:0001300 - chronological cell aging [Evidence IGI,IMP] [PMID 16051752]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 11226170]; GO_process: GO:0045950 - negative regulation of mitotic recombination [Evidence IGI,IMP] [PMID 16051752]; GO_process: GO:0006476 - protein deacetylation [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; histone deacetylase HST2 complement(881240..882298) Sugiyamaella lignohabitans 30034175 AWJ20_2282 CDS TAE2 NC_031674.1 883327 886815 D Component of the ribosome quality control complex (RQC); RQC (Rqc1p-Rkr1p-Tae2p-Cdc48p-Npl4p-Ufd1p) is a ribosome-bound complex required for the degradation of polypeptides arising from stalled translation involved in protein translation; monitors translation stress and signals this to Hsf1p; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23222640]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23479637]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI,IMP] [PMID 20691087]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 23479637]; GO_process: GO:0006412 - translation [Evidence IEA]; Tae2p 883327..886815 Sugiyamaella lignohabitans 30034176 AWJ20_2283 CDS RET3 NC_031674.1 887005 887598 R Zeta subunit of the coatomer complex (COPI); COPI coats Golgi-derived transport vesicles; involved in retrograde transport between Golgi and ER; GO_component: GO:0030126 - COPI vesicle coat [Evidence IMP,ISS] [PMID 8617224]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8617224]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Ret3p complement(887005..887598) Sugiyamaella lignohabitans 30034177 AWJ20_2284 CDS TAF3 NC_031674.1 888608 889438 D TFIID subunit (47 kDa); involved in promoter binding and RNA polymerase II transcription initiation; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 17660549]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf3p 888608..889438 Sugiyamaella lignohabitans 30034178 AWJ20_2285 CDS LRG1 NC_031674.1 889769 890290 R GTPase-activating protein (GAP); contains Rho1p-specific GAP activity, interacting with activated forms of Rho1p; functions along with Sac7p as a negative regulator of the Pkc1p-mediated cell wall integrity signaling pathway; negative regulator of cell wall 1,3-beta-glucan biosynthesis; required for efficient cell fusion; contains a RhoGAP domain and three Lin-11-Isl1-Mec-3 (LIM) domains; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11447600]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 23613772]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11447600]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11447600]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 15514049]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 23613772]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 15514049]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000755 - cytogamy [Evidence IGI,IMP] [PMID 15514049]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI] [PMID 11447600]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0090038 - negative regulation of protein kinase C signaling [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0032321 - positive regulation of Rho GTPase activity [Evidence IDA] [PMID 15514049]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IGI] [PMID 11447600]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI] [PMID 11447600]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Lrg1p complement(889769..890290) Sugiyamaella lignohabitans 30034179 AWJ20_2286 CDS LRG1 NC_031674.1 890454 894704 R GTPase-activating protein (GAP); contains Rho1p-specific GAP activity, interacting with activated forms of Rho1p; functions along with Sac7p as a negative regulator of the Pkc1p-mediated cell wall integrity signaling pathway; negative regulator of cell wall 1,3-beta-glucan biosynthesis; required for efficient cell fusion; contains a RhoGAP domain and three Lin-11-Isl1-Mec-3 (LIM) domains; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11447600]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 23613772]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11447600]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11447600]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 15514049]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 23613772]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 15514049]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000755 - cytogamy [Evidence IGI,IMP] [PMID 15514049]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI] [PMID 11447600]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0090038 - negative regulation of protein kinase C signaling [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0032321 - positive regulation of Rho GTPase activity [Evidence IDA] [PMID 15514049]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IGI] [PMID 11447600]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI] [PMID 11447600]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 11713681]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Lrg1p complement(890454..894704) Sugiyamaella lignohabitans 30034180 AWJ20_2287 CDS AWJ20_2287 NC_031674.1 897720 900917 D Protein BRE4 897720..900917 Sugiyamaella lignohabitans 30034181 AWJ20_2288 CDS ATG2 NC_031674.1 901341 903587 D Peripheral membrane protein required for autophagic vesicle formation; also required for vesicle formation during pexophagy and the cytoplasm-to-vaucole targeting (Cvt) pathway; involved in Atg9p cycling between the phagophore assembly site and mitochondria; essential for cell cycle progression from G2/M to G1 under nitrogen starvation; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11382760]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11382760]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 11689437]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_component: GO:0034045 - pre-autophagosomal structure membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 11382761]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 11382761]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 23382696]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0030242 - peroxisome degradation [Evidence IDA,IEP,IMP] [PMID 11382760]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg2p 901341..903587 Sugiyamaella lignohabitans 30034182 AWJ20_2289 CDS ATG2 NC_031674.1 903791 906649 D Peripheral membrane protein required for autophagic vesicle formation; also required for vesicle formation during pexophagy and the cytoplasm-to-vaucole targeting (Cvt) pathway; involved in Atg9p cycling between the phagophore assembly site and mitochondria; essential for cell cycle progression from G2/M to G1 under nitrogen starvation; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11382760]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11382760]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 11689437]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_component: GO:0034045 - pre-autophagosomal structure membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 11382761]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 11382761]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 23382696]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0030242 - peroxisome degradation [Evidence IDA,IEP,IMP] [PMID 11382760]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg2p 903791..906649 Sugiyamaella lignohabitans 30034183 AWJ20_2290 CDS GAP1 NC_031674.1 907083 908549 R General amino acid permease; Gap1p senses the presence of amino acid substrates to regulate localization to the plasma membrane when needed; essential for invasive growth; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 12499351]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15039776]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 15039776]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 9199164]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005771 - multivesicular body [Evidence IMP] [PMID 14523026]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15623581]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15707981]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 6759873]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 15707981]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 6759873]; GO_process: GO:0015846 - polyamine transport [Evidence IMP] [PMID 15707981]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; amino acid permease GAP1 complement(907083..908549) Sugiyamaella lignohabitans 30034185 AWJ20_2291 CDS AWJ20_2291 NC_031674.1 909885 911462 D uncharacterized protein 909885..911462 Sugiyamaella lignohabitans 30034186 AWJ20_2292 CDS SOV1 NC_031674.1 911524 913821 R Mitochondrial hypothetical protein; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Sov1p complement(911524..913821) Sugiyamaella lignohabitans 30034187 AWJ20_2293 CDS YCF1 NC_031674.1 914026 918042 R Vacuolar glutathione S-conjugate transporter; member of ATP-binding cassette family; ATPase activity required to support vacuole fusion; forms stable complexes with vacuole fusion machinery; regulates Vam7p recruitment to vacuoles; has role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin, selenodigluthatione, and oxidized glutathione; similar to human cystic fibrosis protein CFTR; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23658021]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8692889]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0015127 - bilirubin transmembrane transporter activity [Evidence IGI,IMP] [PMID 10790694]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 10220408]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12383937]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12755704]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 9217966]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015723 - bilirubin transport [Evidence IGI,IMP] [PMID 10790694]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046686 - response to cadmium ion [Evidence IEA]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 10220408]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 12755704]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 9217966]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 10790694]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 23658021]; ATP-binding cassette glutathione S-conjugate transporter YCF1 complement(914026..918042) Sugiyamaella lignohabitans 30034188 AWJ20_2294 CDS SDT1 NC_031674.1 925526 926143 R Pyrimidine nucleotidase; responsible for production of nicotinamide riboside and nicotinic acid riboside; overexpression suppresses the 6-AU sensitivity of transcription elongation factor S-II, as well as resistance to other pyrimidine derivatives; SDT1 has a paralog, PHM8, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008252 - nucleotidase activity [Evidence IDA] [PMID 11934891]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006206 - pyrimidine nucleobase metabolic process [Evidence IMP] [PMID 11934891]; Sdt1p complement(925526..926143) Sugiyamaella lignohabitans 30034189 AWJ20_2295 CDS IDH2 NC_031674.1 927087 928073 R Subunit of mitochondrial NAD(+)-dependent isocitrate dehydrogenase; complex catalyzes the oxidation of isocitrate to alpha-ketoglutarate in the TCA cycle; phosphorylated; GO_component: GO:0005962 - mitochondrial isocitrate dehydrogenase complex (NAD+) [Evidence IDA] [PMID 16884682]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004449 - isocitrate dehydrogenase (NAD+) activity [Evidence IEA,IEA]; GO_function: GO:0004449 - isocitrate dehydrogenase (NAD+) activity [Evidence IDA] [PMID 16884682]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006102 - isocitrate metabolic process [Evidence IDA] [PMID 16884682]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; isocitrate dehydrogenase (NAD(+)) IDH2 complement(927087..928073) Sugiyamaella lignohabitans 30034190 AWJ20_2296 CDS AWJ20_2296 NC_031674.1 927154 927447 D uncharacterized protein 927154..927447 Sugiyamaella lignohabitans 30034191 AWJ20_2297 CDS SRC1 NC_031674.1 933933 936488 R Inner nuclear membrane protein; highly enriched at telomeres and subtelomeric regions; functions in regulation of subtelomeric genes and is linked to TREX (transcription export) factors; SRC1 produces 2 splice variant proteins with different functions; alternative splicing of SRC1 pre-mRNA is promoted by Hub1p; mutant has aneuploidy tolerance; SEC1 has a paralog, HEH2, that arose from the whole genome duplication; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IDA] [PMID 18762579]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005639 - integral component of nuclear inner membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 16929305]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043007 - maintenance of rDNA [Evidence IMP] [PMID 18997772]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 11754482]; Src1p complement(933933..936488) Sugiyamaella lignohabitans 30034192 AWJ20_2298 CDS AMD1 NC_031674.1 937355 939925 D AMP deaminase; tetrameric enzyme that catalyzes the deamination of AMP to form IMP and ammonia; thought to be involved in regulation of intracellular purine (adenine, guanine, and inosine) nucleotide pools; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003876 - AMP deaminase activity [Evidence IEA,IEA]; GO_function: GO:0003876 - AMP deaminase activity [Evidence IDA,IMP] [PMID 2690949]; GO_function: GO:0019239 - deaminase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006188 - IMP biosynthetic process [Evidence IEA]; GO_process: GO:0032264 - IMP salvage [Evidence IEA]; GO_process: GO:0006178 - guanine salvage [Evidence IGI,IMP] [PMID 19635936]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IEA]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IGI] [PMID 15869715]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IGI] [PMID 18433446]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IGI,IMP] [PMID 19635936]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IMP] [PMID 20087341]; GO_process: GO:0009168 - purine ribonucleoside monophosphate biosynthetic process [Evidence IEA]; AMP deaminase 937355..939925 Sugiyamaella lignohabitans 30034193 AWJ20_2299 CDS TAH18 NC_031674.1 940172 942076 R Conserved NAPDH-dependent diflavin reductase; component of an early step in the cytosolic Fe-S protein assembly (CIA) machinery; transfers electrons from NADPH to the Fe-S cluster of Dre2p; plays a pro-death role under oxidative stress; Tah18p-dependent nitric oxide synthesis confers high-temperature stress tolerance; possible target for development of antifungal drugs; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19194512]; GO_function: GO:0010181 - FMN binding [Evidence IEA,IEA]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0003958 - NADPH-hemoprotein reductase activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]; GO_function: GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IDA] [PMID 20802492]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 20802492]; GO_process: GO:0006809 - nitric oxide biosynthetic process [Evidence IMP] [PMID 23159617]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IDA] [PMID 20802492]; Tah18p complement(940172..942076) Sugiyamaella lignohabitans 30034194 AWJ20_2300 CDS MGE1 NC_031674.1 944999 945778 D N-terminus has a leader sequence with features reminiscent of mitochondrial import signals. Translated as a 28KDa precursor protein which is cleaved to a 21KDa mature form.; Mge1p 944999..945778 Sugiyamaella lignohabitans 30034197 AWJ20_2301 CDS MSF1 NC_031674.1 946050 947468 R Mitochondrial phenylalanyl-tRNA synthetase; active as a monomer, unlike the cytoplasmic subunit which is active as a dimer complexed to a beta subunit dimer; similar to the alpha subunit of E. coli phenylalanyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 3029120]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 16162501]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 1924298]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IMP,ISS] [PMID 3029120]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_process: GO:0070156 - mitochondrial phenylalanyl-tRNA aminoacylation [Evidence IMP] [PMID 3029120]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IDA] [PMID 1924298]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; phenylalanine--tRNA ligase complement(946050..947468) Sugiyamaella lignohabitans 30034198 AWJ20_2302 CDS AWJ20_2302 NC_031674.1 946438 946851 D uncharacterized protein 946438..946851 Sugiyamaella lignohabitans 30034199 AWJ20_2303 CDS MRPL16 NC_031674.1 948033 948749 D Mitochondrial ribosomal protein of the large subunit; homologous to bacterial L16 ribosomal protein; synthetically lethal with hac1 mutant suggesting a role in the maturation of secretory proteins; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 7478995]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 7478995]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 7478995]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 19433630]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL47 948033..948749 Sugiyamaella lignohabitans 30034200 AWJ20_2304 CDS RFC5 NC_031674.1 949020 950087 R Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; GO_component: GO:0031390 - Ctf18 RFC-like complex [Evidence IPI] [PMID 11389843]; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IDA] [PMID 7651383]; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IMP] [PMID 8559655]; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12909721]; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12912927]; GO_component: GO:0031389 - Rad17 RFC-like complex [Evidence IDA] [PMID 12604797]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 12604797]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 8995429]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006272 - leading strand elongation [Evidence IDA] [PMID 1346062]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IPI] [PMID 11389843]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IMP] [PMID 12665596]; replication factor C subunit 5 complement(949020..950087) Sugiyamaella lignohabitans 30034201 AWJ20_2305 CDS STL1 NC_031674.1 950442 950783 R glucose-inactivated glycerol proton symporter STL1 complement(950442..950783) Sugiyamaella lignohabitans 30034202 AWJ20_2306 CDS STL1 NC_031674.1 951331 951828 R glucose-inactivated glycerol proton symporter STL1 complement(951331..951828) Sugiyamaella lignohabitans 30034203 AWJ20_2307 CDS STL1 NC_031674.1 951898 952176 R glucose-inactivated glycerol proton symporter STL1 complement(951898..952176) Sugiyamaella lignohabitans 30034204 AWJ20_2308 CDS SPS19 NC_031674.1 955858 956838 D Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 955858..956838 Sugiyamaella lignohabitans 30034205 AWJ20_2309 CDS AWJ20_2309 NC_031674.1 957086 957586 R uncharacterized protein complement(957086..957586) Sugiyamaella lignohabitans 30034206 AWJ20_2310 CDS DAK1 NC_031674.1 958231 959997 D Dihydroxyacetone kinase; required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IDA] [PMID 12401799]; GO_function: GO:0004371 - glycerone kinase activity [Evidence ISS] [PMID 9038161]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0050354 - triokinase activity [Evidence IEA]; GO_process: GO:0019588 - anaerobic glycerol catabolic process [Evidence IEA]; GO_process: GO:0097237 - cellular response to toxic substance [Evidence IMP] [PMID 12401799]; GO_process: GO:0019563 - glycerol catabolic process [Evidence ISS] [PMID 9038161]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Dak1p 958231..959997 Sugiyamaella lignohabitans 30034208 AWJ20_2311 CDS TPI1 NC_031674.1 960344 961111 D Triose phosphate isomerase, abundant glycolytic enzyme; mRNA half-life is regulated by iron availability; transcription is controlled by activators Reb1p, Gcr1p, and Rap1p through binding sites in the 5' non-coding region; inhibition of Tpi1p activity by PEP (phosphoenolpyruvate) stimulates redox metabolism in respiring cells; E104D mutation in human TPI causes a rare autosomal disease; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004807 - triose-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004807 - triose-phosphate isomerase activity [Evidence IDA] [PMID 236471]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 11329176]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA]; triose-phosphate isomerase TPI1 960344..961111 Sugiyamaella lignohabitans 30034209 AWJ20_2312 CDS AWJ20_2312 NC_031674.1 961621 963468 R uncharacterized protein complement(961621..963468) Sugiyamaella lignohabitans 30034210 AWJ20_2315 CDS SDS22 NC_031674.1 965639 966403 R Regulatory subunit of the type 1 protein phosphatase (PP1) Glc7p; whether it functions as a positive or negative regulator of Glc7p is controversial; involved in the regulation of Glc7p nuclear localization and function; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11801737]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000164 - protein phosphatase type 1 complex [Evidence IDA] [PMID 10775415]; GO_function: GO:0071862 - protein phosphatase type 1 activator activity [Evidence IGI] [PMID 11801737]; GO_function: GO:0071862 - protein phosphatase type 1 activator activity [Evidence IGI] [PMID 18172024]; GO_function: GO:0004865 - protein serine/threonine phosphatase inhibitor activity [Evidence IGI,IMP] [PMID 17142459]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 11801737]; GO_process: GO:0051457 - maintenance of protein location in nucleus [Evidence IMP] [PMID 11801737]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; Sds22p complement(965639..966403) Sugiyamaella lignohabitans 30034213 AWJ20_2316 CDS ACP1 NC_031674.1 969267 969593 R Mitochondrial matrix acyl carrier protein; involved in biosynthesis of octanoate, which is a precursor to lipoic acid; activated by phosphopantetheinylation catalyzed by Ppt2p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0000036 - ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [Evidence ISS] [PMID 8394042]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0009107 - lipoate biosynthetic process [Evidence IMP] [PMID 9187370]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Acp1p complement(969267..969593) Sugiyamaella lignohabitans 30034214 AWJ20_2317 CDS AWJ20_2317 NC_031674.1 971377 973071 R Myosin-Vb complement(971377..973071) Sugiyamaella lignohabitans 30034215 AWJ20_2318 CDS AWJ20_2318 NC_031674.1 973386 975245 R uncharacterized protein complement(973386..975245) Sugiyamaella lignohabitans 30034216 AWJ20_2319 CDS SST2 NC_031674.1 976463 978091 R GTPase-activating protein SST2 complement(976463..978091) Sugiyamaella lignohabitans 30034217 AWJ20_2320 CDS MKK2 NC_031674.1 978777 980540 R putative mitogen-activated protein kinase kinase MKK2 complement(978777..980540) Sugiyamaella lignohabitans 30034219 AWJ20_2321 CDS NAS6 NC_031674.1 984023 984829 D Assembly chaperone for the 19S proteasome regulatory particle base; proteasome-interacting protein involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP); ortholog of human oncoprotein gankyrin, which interacts with the Rb tumor suppressor and CDK4/6; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19446323]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19446323]; GO_component: GO:0005838 - proteasome regulatory particle [Evidence IDA] [PMID 11029046]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI] [PMID 19412159]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446322]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446323]; GO_process: GO:0006508 - proteolysis [Evidence IPI,ISS] [PMID 11029046]; Nas6p 984023..984829 Sugiyamaella lignohabitans 30034220 AWJ20_2322 CDS RPL18A NC_031674.1 985327 985887 R Ribosomal 60S subunit protein L18A; intron of RPL18A pre-mRNA forms stem-loop structures that are a target for Rnt1p cleavage leading to degradation; homologous to mammalian ribosomal protein L18, no bacterial homolog; RPL18A has a paralog, RPL18B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L18A complement(985327..985887) Sugiyamaella lignohabitans 30034221 AWJ20_2323 CDS SMI1 NC_031674.1 988923 990764 R Protein involved in the regulation of cell wall synthesis; proposed to be involved in coordinating cell cycle progression with cell wall integrity; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10206705]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 10206705]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042546 - cell wall biogenesis [Evidence IEA]; GO_process: GO:0032995 - regulation of fungal-type cell wall biogenesis [Evidence IGI,IMP] [PMID 10206705]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IGI] [PMID 11410349]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IMP] [PMID 12823808]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Smi1p complement(988923..990764) Sugiyamaella lignohabitans 30034222 AWJ20_2324 CDS RPS15 NC_031674.1 994160 994438 D Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S15 and bacterial S19; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 15167894]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 16246728]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S15 994160..994438 Sugiyamaella lignohabitans 30034223 AWJ20_2325 CDS MTC6 NC_031674.1 994715 996325 R hypothetical protein; mtc6 is synthetically sick with cdc13-1; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mtc6p complement(994715..996325) Sugiyamaella lignohabitans 30034224 AWJ20_2326 CDS PHB2 NC_031674.1 999246 1000166 D Subunit of the prohibitin complex (Phb1p-Phb2p); prohibitin is a 1.2 MDa ring-shaped inner mitochondrial membrane chaperone that stabilizes newly synthesized proteins; determinant of replicative life span; involved in mitochondrial segregation; prohibitin deficiency induces a mitochondrial unfolded protein response (mtUPR); GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10835343]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9632789]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9259555]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IMP] [PMID 12882345]; GO_process: GO:0045861 - negative regulation of proteolysis [Evidence IMP,IPI] [PMID 10207067]; GO_process: GO:0006457 - protein folding [Evidence IDA,IPI,ISS] [PMID 10835343]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 12882345]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 9259555]; prohibitin subunit PHB2 999246..1000166 Sugiyamaella lignohabitans 30034225 AWJ20_2327 CDS ALT1 NC_031674.1 1003176 1004927 R Alanine transaminase (glutamic pyruvic transaminase); involved in alanine biosynthesis and catabolism; TOR1-independent role in determining chronological lifespan; expression is induced in the presence of alanine; repression is mediated by Nrg1p; ALT1 has a paralog, ALT2, that arose from the whole genome duplication; Alt2p is catalytically inactive; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity [Evidence IMP] [PMID 19396236]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0042853 - L-alanine catabolic process [Evidence IEA]; GO_process: GO:0006523 - alanine biosynthetic process [Evidence IMP] [PMID 19396236]; GO_process: GO:0006524 - alanine catabolic process [Evidence IMP] [PMID 19396236]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 23527786]; alanine transaminase ALT1 complement(1003176..1004927) Sugiyamaella lignohabitans 30034226 AWJ20_2328 CDS FES1 NC_031674.1 1007175 1008038 D Hsp70 (Ssa1p) nucleotide exchange factor; required for the release of misfolded proteins from the Hsp70 system to the Ub-proteasome machinery for destruction; cytosolic homolog of Sil1p, which is the nucleotide exchange factor for BiP (Kar2p) in the endoplasmic reticulum; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12052876]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IPI] [PMID 12052876]; GO_function: GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IDA,IPI] [PMID 12052876]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA,IMP] [PMID 23530227]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 12052876]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; Fes1p 1007175..1008038 Sugiyamaella lignohabitans 30034227 AWJ20_2329 CDS AWJ20_2329 NC_031674.1 1008387 1009376 D uncharacterized protein 1008387..1009376 Sugiyamaella lignohabitans 30034228 AWJ20_2330 CDS AWJ20_2330 NC_031674.1 1011870 1012748 D NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 1011870..1012748 Sugiyamaella lignohabitans 30034230 AWJ20_2331 CDS DAL4 NC_031674.1 1012839 1014503 R Allantoin permease; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 1293888]; GO_function: GO:0005274 - allantoin uptake transmembrane transporter activity [Evidence ISS] [PMID 1293888]; GO_function: GO:0005274 - allantoin uptake transmembrane transporter activity [Evidence IMP] [PMID 385448]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0000256 - allantoin catabolic process [Evidence IMP] [PMID 385448]; GO_process: GO:0015720 - allantoin transport [Evidence IMP] [PMID 3549700]; GO_process: GO:0015720 - allantoin transport [Evidence IMP] [PMID 385448]; GO_process: GO:0015851 - nucleobase transport [Evidence IEA]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Dal4p complement(1012839..1014503) Sugiyamaella lignohabitans 30034231 AWJ20_2332 CDS DAL81 NC_031674.1 1014919 1017123 D Positive regulator of genes in multiple nitrogen degradation pathways; contains DNA binding domain but does not appear to bind the dodecanucleotide sequence present in the promoter region of many genes involved in allantoin catabolism; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 20581295]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0001128 - RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IPI] [PMID 10906145]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 17603098]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 10906145]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7899074]; GO_process: GO:1901717 - positive regulation of gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:1901714 - positive regulation of urea catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Dal81p 1014919..1017123 Sugiyamaella lignohabitans 30034232 AWJ20_2333 CDS AWJ20_2333 NC_031674.1 1017146 1019029 R uncharacterized protein complement(1017146..1019029) Sugiyamaella lignohabitans 30034233 AWJ20_2334 CDS AMD2 NC_031674.1 1019388 1020035 D Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; Amd2p 1019388..1020035 Sugiyamaella lignohabitans 30034234 AWJ20_2335 CDS AMD2 NC_031674.1 1020105 1020995 D Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; Amd2p 1020105..1020995 Sugiyamaella lignohabitans 30034235 AWJ20_2336 CDS PKP2 NC_031674.1 1021833 1023350 D protein kinase PKP2 1021833..1023350 Sugiyamaella lignohabitans 30034236 AWJ20_2337 CDS DUG1 NC_031674.1 1023560 1024861 R Cys-Gly metallo-di-peptidase; forms a complex with Dug2p and Dug3p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17179087]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0016805 - dipeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0070573 - metallodipeptidase activity [Evidence IDA,IMP] [PMID 19346245]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008242 - omega peptidase activity [Evidence IGI] [PMID 17179087]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0034701 - tripeptidase activity [Evidence IEA]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IMP] [PMID 17179087]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; metallodipeptidase complement(1023560..1024861) Sugiyamaella lignohabitans 30034237 AWJ20_2338 CDS CDC33 NC_031674.1 1027100 1029173 D mRNA cap binding protein and translation initiation factor eIF4E; the eIF4E-cap complex is responsible for mediating cap-dependent mRNA translation via interactions with translation initiation factor eIF4G (Tif4631p or Tif4632p); protein abundance increases in response to DNA replication stress; mutants are defective for adhesion and pseudohyphal growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8119957]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0016281 - eukaryotic translation initiation factor 4F complex [Evidence TAS] [PMID 9841679]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8119957]; GO_component: GO:0005840 - ribosome [Evidence TAS] [PMID 9841679]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence ISS] [PMID 3062383]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IDA,IPI] [PMID 15753296]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 2540596]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence ISS] [PMID 3062383]; translation initiation factor eIF4E join(1027100..1027320,1027700..1029173) Sugiyamaella lignohabitans 30034238 AWJ20_2339 CDS CHA4 NC_031674.1 1030694 1033006 D DNA binding transcriptional activator; mediates serine/threonine activation of the catabolic L-serine (L-threonine) deaminase (CHA1); Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 8889513]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA,IPI,ISS] [PMID 8889513]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009063 - cellular amino acid catabolic process [Evidence IGI,IMP] [PMID 8889513]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IMP] [PMID 8889513]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Cha4p 1030694..1033006 Sugiyamaella lignohabitans 30034239 AWJ20_2340 CDS mug73 NC_031674.1 1033238 1034554 R membrane transporter (predicted) complement(1033238..1034554) Sugiyamaella lignohabitans 30034241 AWJ20_2341 CDS AWJ20_2341 NC_031674.1 1038142 1039449 D uncharacterized protein 1038142..1039449 Sugiyamaella lignohabitans 30034242 AWJ20_2342 CDS STT4 NC_031674.1 1039843 1045820 D Phosphatidylinositol-4-kinase; functions in the Pkc1p protein kinase pathway; required for normal vacuole morphology, cell wall integrity, and actin cytoskeleton organization; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12015967]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19075114]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IEA]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IMP] [PMID 8288577]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IDA] [PMID 9346907]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IGI] [PMID 10930462]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9346907]; GO_process: GO:0048015 - phosphatidylinositol-mediated signaling [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol 4-kinase STT4 join(1039843..1040049,1040199..1045820) Sugiyamaella lignohabitans 30034243 AWJ20_2343 CDS SWI5 NC_031674.1 1046114 1047631 R DNA-binding transcription factor SWI5 complement(1046114..1047631) Sugiyamaella lignohabitans 30034244 AWJ20_2344 CDS AWJ20_2344 NC_031674.1 1049244 1049918 R uncharacterized protein complement(1049244..1049918) Sugiyamaella lignohabitans 30034245 AWJ20_2345 CDS KGD2 NC_031674.1 1051479 1052642 D Dihydrolipoyl transsuccinylase; component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes the oxidative decarboxylation of alpha-ketoglutarate to succinyl-CoA in the TCA cycle; phosphorylated; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 11926067]; GO_component: GO:0009353 - mitochondrial oxoglutarate dehydrogenase complex [Evidence IDA] [PMID 2072900]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045252 - oxoglutarate dehydrogenase complex [Evidence IEA]; GO_function: GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence ISA] [PMID 2115121]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0006103 - 2-oxoglutarate metabolic process [Evidence IMP] [PMID 2115121]; GO_process: GO:0033512 - L-lysine catabolic process to acetyl-CoA via saccharopine [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 10869431]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IC] [PMID 2072900]; alpha-ketoglutarate dehydrogenase KGD2 1051479..1052642 Sugiyamaella lignohabitans 30034246 AWJ20_2346 CDS CKI1 NC_031674.1 1052956 1054485 R Choline kinase; catalyzes the first step in phosphatidylcholine synthesis via the CDP-choline (Kennedy pathway); exhibits some ethanolamine kinase activity contributing to phosphatidylethanolamine synthesis via the CDP-ethanolamine pathway; CKI1 has a paralog, EKI1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004103 - choline kinase activity [Evidence IEA]; GO_function: GO:0004103 - choline kinase activity [Evidence IGI,IMP] [PMID 10329685]; GO_function: GO:0004103 - choline kinase activity [Evidence IDA] [PMID 2536698]; GO_function: GO:0004305 - ethanolamine kinase activity [Evidence IGI,IMP] [PMID 10329685]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006657 - CDP-choline pathway [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IGI,IMP] [PMID 10329685]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IGI,IMP] [PMID 10329685]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; bifunctional choline kinase/ethanolamine kinase CKI1 complement(1052956..1054485) Sugiyamaella lignohabitans 30034247 AWJ20_2347 CDS RIM4 NC_031674.1 1061364 1062749 D Putative RNA-binding protein; required for the expression of early and middle sporulation genes; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP,ISS] [PMID 10806425]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEP] [PMID 10806425]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 11713679]; GO_process: GO:0006279 - premeiotic DNA replication [Evidence IMP] [PMID 11713679]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 11713679]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IGI,IMP] [PMID 10806425]; Rim4p 1061364..1062749 Sugiyamaella lignohabitans 30034248 AWJ20_2348 CDS ATG7 NC_031674.1 1064279 1065214 D Autophagy-related protein and dual specificity member of the E1 family; mediates the conjugation of Atg12p with Atg5p and Atg8p with phosphatidylethanolamine which are required steps in autophagosome formation; E1 enzymes are also known as ubiquitin-activating enzymes; involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10233150]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 10233148]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_function: GO:0019778 - Atg12 activating enzyme activity [Evidence IMP] [PMID 10233150]; GO_function: GO:0019779 - Atg8 activating enzyme [Evidence IMP] [PMID 11100732]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11038174]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11100732]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 12965207]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IDA,IMP] [PMID 15277523]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 10233150]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 12965207]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 23382696]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 10233150]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 12965207]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0032446 - protein modification by small protein conjugation [Evidence IMP] [PMID 10233150]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg7p 1064279..1065214 Sugiyamaella lignohabitans 30034249 AWJ20_2349 CDS ATG7 NC_031674.1 1065299 1065733 D Autophagy-related protein and dual specificity member of the E1 family; mediates the conjugation of Atg12p with Atg5p and Atg8p with phosphatidylethanolamine which are required steps in autophagosome formation; E1 enzymes are also known as ubiquitin-activating enzymes; involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10233150]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 10233148]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18497569]; GO_function: GO:0019778 - Atg12 activating enzyme activity [Evidence IMP] [PMID 10233150]; GO_function: GO:0019779 - Atg8 activating enzyme [Evidence IMP] [PMID 11100732]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11038174]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11100732]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 12965207]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IDA,IMP] [PMID 15277523]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 10233150]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 12965207]; GO_process: GO:0006914 - autophagy [Evidence IEA,IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 23382696]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 10233150]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 12965207]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0032446 - protein modification by small protein conjugation [Evidence IMP] [PMID 10233150]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg7p 1065299..1065733 Sugiyamaella lignohabitans 30034250 AWJ20_2350 CDS SRP54 NC_031674.1 1066730 1068301 D Signal recognition particle (SRP) subunit (homolog of mammalian SRP54); contains the signal sequence-binding activity of SRP, interacts with the SRP RNA, and mediates binding of SRP to signal receptor; contains GTPase domain; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0048500 - signal recognition particle [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IDA] [PMID 7925282]; GO_function: GO:0008312 - 7S RNA binding [Evidence IEA]; GO_function: GO:0008312 - 7S RNA binding [Evidence IDA] [PMID 14681587]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISA] [PMID 2187859]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence IPI] [PMID 7925282]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IMP] [PMID 1655273]; GO_process: GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [Evidence ISA] [PMID 2187859]; GO_process: GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [Evidence IC] [PMID 7925282]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0045047 - protein targeting to ER [Evidence IPI] [PMID 7925282]; Srp54p 1066730..1068301 Sugiyamaella lignohabitans 30034252 AWJ20_2351 CDS THR4 NC_031674.1 1068712 1070259 D Threonine synthase; conserved protein that catalyzes formation of threonine from O-phosphohomoserine; expression is regulated by the GCN4-mediated general amino acid control pathway; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0004795 - threonine synthase activity [Evidence IEA]; GO_function: GO:0004795 - threonine synthase activity [Evidence IMP] [PMID 8082795]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IMP] [PMID 8082795]; threonine synthase THR4 1068712..1070259 Sugiyamaella lignohabitans 30034253 AWJ20_2352 CDS YSH1 NC_031674.1 1070528 1072486 R Putative endoribonuclease; subunit of the mRNA cleavage and polyadenylation specificity complex; required for 3' processing, splicing, and transcriptional termination of mRNAs and snoRNAs; protein abundance increases in response to DNA replication stress; YSH1 has a paralog, SYC1, that arose from the whole genome duplication; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 10523662]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IC] [PMID 9099738]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IMP,ISS] [PMID 15037765]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IMP] [PMID 18971324]; GO_process: GO:0006379 - mRNA cleavage [Evidence IMP] [PMID 18971324]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IMP] [PMID 18971324]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0031126 - snoRNA 3'-end processing [Evidence IMP] [PMID 18971324]; GO_process: GO:0034247 - snoRNA splicing [Evidence IMP] [PMID 18971324]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 18971324]; Ysh1p complement(1070528..1072486) Sugiyamaella lignohabitans 30034254 AWJ20_2353 CDS AWJ20_2353 NC_031674.1 1073286 1074342 D recombination protein Irc6 (predicted) join(1073286..1073359,1073469..1074342) Sugiyamaella lignohabitans 30034255 AWJ20_2354 CDS ERJ5 NC_031674.1 1076238 1077074 D Type I membrane protein with a J domain; required to preserve the folding capacity of the endoplasmic reticulum; loss of the non-essential ERJ5 gene leads to a constitutively induced unfolded protein response; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17157937]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 17157937]; Erj5p 1076238..1077074 Sugiyamaella lignohabitans 30034256 AWJ20_2355 CDS SAP190 NC_031674.1 1080036 1081994 R Protein that forms a complex with the Sit4p protein phosphatase; required for Sit4p function; member of a family of similar proteins including Sap4p, Sap155p, and Sap185p; SAP190 has a paralog, SAP185, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 8649382]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI,IMP,IPI] [PMID 8649382]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 15367655]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IMP] [PMID 15367655]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IGI] [PMID 18755837]; Sap190p complement(1080036..1081994) Sugiyamaella lignohabitans 30034257 AWJ20_2356 CDS SAP190 NC_031674.1 1082214 1083530 R Protein that forms a complex with the Sit4p protein phosphatase; required for Sit4p function; member of a family of similar proteins including Sap4p, Sap155p, and Sap185p; SAP190 has a paralog, SAP185, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 8649382]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI,IMP,IPI] [PMID 8649382]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 15367655]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IMP] [PMID 15367655]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IGI] [PMID 18755837]; Sap190p complement(1082214..1083530) Sugiyamaella lignohabitans 30034258 AWJ20_2357 CDS AWJ20_2357 NC_031674.1 1086639 1089113 D uncharacterized protein join(1086639..1086772,1086965..1089113) Sugiyamaella lignohabitans 30034259 AWJ20_2358 CDS FRE2 NC_031674.1 1090623 1091834 D Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low iron levels but not by low copper levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 9153234]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre2p 1090623..1091834 Sugiyamaella lignohabitans 30034260 AWJ20_2359 CDS SEC2 NC_031674.1 1093032 1095101 D guanine nucleotide exchange factor SEC2 1093032..1095101 Sugiyamaella lignohabitans 30034261 AWJ20_2360 CDS POT1 NC_031674.1 1096308 1097564 D 3-ketoacyl-CoA thiolase with broad chain length specificity; cleaves 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA during beta-oxidation of fatty acids; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 7754706]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA,IMP,ISM] [PMID 8125978]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 19470242]; GO_function: GO:0003988 - acetyl-CoA C-acyltransferase activity [Evidence IEA]; GO_function: GO:0003988 - acetyl-CoA C-acyltransferase activity [Evidence IDA] [PMID 7754706]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12819196]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; acetyl-CoA C-acyltransferase 1096308..1097564 Sugiyamaella lignohabitans 30034263 AWJ20_2361 CDS AWJ20_2361 NC_031674.1 1100322 1102295 R catabolite repression protein creC complement(1100322..1102295) Sugiyamaella lignohabitans 30034264 AWJ20_2362 CDS adn3 NC_031674.1 1103117 1105354 R transcription factor (predicted) complement(1103117..1105354) Sugiyamaella lignohabitans 30034265 AWJ20_2363 CDS AWJ20_2363 NC_031674.1 1110395 1112869 D uncharacterized protein 1110395..1112869 Sugiyamaella lignohabitans 30034266 AWJ20_2364 CDS AWJ20_2364 NC_031674.1 1115209 1115835 D uncharacterized protein 1115209..1115835 Sugiyamaella lignohabitans 30034267 AWJ20_2365 CDS VID30 NC_031674.1 1116038 1118752 R Central component of GID Complex, involved in FBPase degradation; interacts strongly with Gid8p to serve as a scaffold for other GID Complex subunits; contains SPRY domain and 3 domains that are also found in Gid8p - LisH, CTLH, and CRA; required for association of Vid vesicles and actin patches in vacuole import and degradation pathway; shifts the balance of nitrogen metabolism toward glutamate production; localizes to the nucleus and the cytoplasm; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 16872538]; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 18508925]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15358789]; GO_process: GO:0006808 - regulation of nitrogen utilization [Evidence IMP] [PMID 11356843]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 8844145]; glucose-induced degradation complex subunit VID30 complement(1116038..1118752) Sugiyamaella lignohabitans 30034268 AWJ20_2366 CDS SPN1 NC_031674.1 1120497 1121939 D Protein involved in RNA polymerase II transcription; is constitutively recruited to the CYC1 promoter and is required for recruitment of chromatin remodeling factors for the expression of CYC1 gene; interacts genetically or physically with RNAP II, TBP, TFIIS, and chromatin remodelling factors; central domain highly conserved throughout eukaryotes; mutations confer an Spt- phenotype; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12524336]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12556496]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 18086892]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 21094070]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 21156811]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 12556496]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IPI] [PMID 12556496]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IPI] [PMID 18086892]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 19034519]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IPI] [PMID 21094070]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 21156811]; GO_process: GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 18086892]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 12524336]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI,IPI] [PMID 12556496]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Spn1p 1120497..1121939 Sugiyamaella lignohabitans 30034269 AWJ20_2367 CDS IES1 NC_031674.1 1124688 1127354 R Subunit of the INO80 chromatin remodeling complex; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0031011 - Ino80 complex [Evidence IDA] [PMID 12887900]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IDA] [PMID 12887900]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ies1p complement(1124688..1127354) Sugiyamaella lignohabitans 30034270 AWJ20_2368 CDS KEX2 NC_031674.1 1127948 1130788 R kexin KEX2 complement(1127948..1130788) Sugiyamaella lignohabitans 30034271 AWJ20_2369 CDS AWJ20_2369 NC_031674.1 1134055 1135047 D uncharacterized protein 1134055..1135047 Sugiyamaella lignohabitans 30034272 AWJ20_2370 CDS AWJ20_2370 NC_031674.1 1136646 1138725 D uncharacterized protein join(1136646..1137050,1137109..1138725) Sugiyamaella lignohabitans 30034274 AWJ20_2371 CDS AWJ20_2371 NC_031674.1 1138783 1139100 D uncharacterized protein 1138783..1139100 Sugiyamaella lignohabitans 30034275 AWJ20_2372 CDS PHO2 NC_031674.1 1141365 1143068 D Homeobox transcription factor; regulatory targets include genes involved in phosphate metabolism; binds cooperatively with Pho4p to the PHO5 promoter; phosphorylation of Pho2p facilitates interaction with Pho4p; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1493793]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 2664469]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IMP] [PMID 3303332]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IGI,IMP] [PMID 7902583]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IGI,IMP] [PMID 9566882]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 2196175]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IGI,IMP] [PMID 3303332]; GO_process: GO:0043388 - positive regulation of DNA binding [Evidence IMP] [PMID 7902583]; GO_process: GO:0043388 - positive regulation of DNA binding [Evidence IDA] [PMID 8355698]; GO_process: GO:0045937 - positive regulation of phosphate metabolic process [Evidence IGI] [PMID 3915785]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 3303332]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 3915785]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 7902583]; GO_process: GO:2000679 - positive regulation of transcription regulatory region DNA binding [Evidence IMP] [PMID 9354395]; GO_process: GO:0009113 - purine nucleobase biosynthetic process [Evidence IDA,IMP] [PMID 1495962]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Pho2p 1141365..1143068 Sugiyamaella lignohabitans 30034276 AWJ20_2373 CDS PTM1 NC_031674.1 1143784 1145673 D hypothetical protein; copurifies with late Golgi vesicles containing the v-SNARE Tlg2p; PTM1 has a paralog, YHL017W, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031901 - early endosome membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Ptm1p 1143784..1145673 Sugiyamaella lignohabitans 30034277 AWJ20_2374 CDS RPL7B NC_031674.1 1145913 1146668 R Ribosomal 60S subunit protein L7B; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2); binds to Domain II of 25S and 5.8S rRNAs; homologous to mammalian ribosomal protein L7 and bacterial L30; RPL7B has a paralog, RPL7A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19466602]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23874617]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 19466602]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 23874617]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 23874617]; GO_process: GO:0000470 - maturation of LSU-rRNA [Evidence IMP] [PMID 22893726]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IDA] [PMID 23945946]; ribosomal 60S subunit protein L7B complement(1145913..1146668) Sugiyamaella lignohabitans 30034278 AWJ20_2375 CDS RFX1 NC_031674.1 1149986 1153516 D Major transcriptional repressor of DNA-damage-regulated genes; recruits repressors Tup1p and Cyc8p to their promoters; involved in DNA damage and replication checkpoint pathway; similar to a family of mammalian DNA binding RFX1-4 proteins; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9741624]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 16835445]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9741624]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16107689]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; Rfx1p 1149986..1153516 Sugiyamaella lignohabitans 30034279 AWJ20_2376 CDS AWJ20_2376 NC_031674.1 1155104 1155835 R uncharacterized protein complement(1155104..1155835) Sugiyamaella lignohabitans 30034280 AWJ20_2377 CDS RRP14 NC_031674.1 1156905 1158342 D Essential protein, constituent of 66S pre-ribosomal particles; interacts with proteins involved in ribosomal biogenesis and cell polarity; member of the SURF-6 family; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 17272295]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11489916]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17804645]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IPI] [PMID 15100437]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 17272295]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 17804645]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 17272295]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp14p join(1156905..1156922,1156993..1158342) Sugiyamaella lignohabitans 30034281 AWJ20_2378 CDS AWJ20_2378 NC_031674.1 1160584 1161783 D uncharacterized protein 1160584..1161783 Sugiyamaella lignohabitans 30034282 AWJ20_2379 CDS GZF3 NC_031674.1 1165136 1168093 D GATA zinc finger protein; negatively regulates nitrogen catabolic gene expression by competing with Gat1p for GATA site binding; function requires a repressive carbon source; dimerizes with Dal80p and binds to Tor1p; GZF3 has a paralog, DAL80, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19380492]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 9171383]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA,IMP] [PMID 19380492]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0051457 - maintenance of protein location in nucleus [Evidence IPI] [PMID 19380492]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9171383]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IGI] [PMID 9106207]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IMP] [PMID 9171383]; GO_process: GO:0090295 - nitrogen catabolite repression of transcription [Evidence IGI,IMP] [PMID 9171427]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Gzf3p 1165136..1168093 Sugiyamaella lignohabitans 30034283 AWJ20_2380 CDS NDE1 NC_031674.1 1168592 1170895 R Mitochondrial external NADH dehydrogenase; type II NAD(P)H:quinone oxidoreductase that catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p provide cytosolic NADH to the mitochondrial respiratory chain; NDE1 has a paralog, NDE2, that arose from the whole genome duplication; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 9696750]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 9733747]; GO_function: GO:0003954 - NADH dehydrogenase activity [Evidence IDA,ISS] [PMID 9696750]; GO_function: GO:0003954 - NADH dehydrogenase activity [Evidence IDA,ISS] [PMID 9733747]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 12032156]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 16436509]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IMP] [PMID 9696750]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IMP] [PMID 9733747]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; NADH-ubiquinone reductase (H(+)-translocating) NDE1 complement(1168592..1170895) Sugiyamaella lignohabitans 30034285 AWJ20_2381 CDS YSC84 NC_031674.1 1172770 1174083 D Actin-binding protein; involved in bundling of actin filaments and endocytosis of actin cortical patches; activity stimulated by Las17p; contains SH3 domain similar to Rvs167p; YSC84 has a paralog, LSB3, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 12388763]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 19158382]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI,IMP] [PMID 19158382]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 12388763]; GO_process: GO:0051017 - actin filament bundle assembly [Evidence IDA] [PMID 19158382]; GO_process: GO:0007015 - actin filament organization [Evidence IPI] [PMID 10512884]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 12388763]; Ysc84p 1172770..1174083 Sugiyamaella lignohabitans 30034286 AWJ20_2382 CDS SPS19 NC_031674.1 1177815 1178699 D Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 1177815..1178699 Sugiyamaella lignohabitans 30034287 AWJ20_2383 CDS AWJ20_2383 NC_031674.1 1180225 1181154 D top hit is XP_006261139.1 originated in Alligator mississippiensis; pirin 1180225..1181154 Sugiyamaella lignohabitans 30034288 AWJ20_2384 CDS AWJ20_2384 NC_031674.1 1183244 1186285 D uncharacterized protein 1183244..1186285 Sugiyamaella lignohabitans 30034289 AWJ20_2385 CDS AWJ20_2385 NC_031674.1 1187232 1188617 R uncharacterized protein complement(1187232..1188617) Sugiyamaella lignohabitans 30034290 AWJ20_2386 CDS NOG2 NC_031674.1 1189187 1190119 D Putative GTPase; associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11707418]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 11707418]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence TAS] [PMID 12362983]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11583615]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP,IPI] [PMID 11707418]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; putative GTPase NOG2 1189187..1190119 Sugiyamaella lignohabitans 30034291 AWJ20_2387 CDS NOG2 NC_031674.1 1190816 1191331 D Putative GTPase; associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11707418]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 11707418]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence TAS] [PMID 12362983]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11583615]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP,IPI] [PMID 11707418]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; putative GTPase NOG2 1190816..1191331 Sugiyamaella lignohabitans 30034292 AWJ20_2388 CDS AWJ20_2388 NC_031674.1 1191529 1192524 R uncharacterized protein complement(1191529..1192524) Sugiyamaella lignohabitans 30034293 AWJ20_2389 CDS MDR1 NC_031674.1 1193722 1196535 D Cytoplasmic GTPase-activating protein; activates Ypt/Rab transport GTPases Ypt6p, Ypt31p and Sec4p; involved in recycling of internalized proteins and regulation of Golgi secretory function; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12807768]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IDA,ISS] [PMID 10559187]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 15574876]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; Mdr1p 1193722..1196535 Sugiyamaella lignohabitans 30034294 AWJ20_2390 CDS VPS28 NC_031674.1 1197361 1198131 R Component of the ESCRT-I complex; complex is involved in ubiquitin-dependent sorting of proteins into the endosome; conserved C-terminal domain interacts with ESCRT-III subunit Vps20p; other members include Stp22p, Srn2p, Vps28p, and Mvb12p; GO_component: GO:0000813 - ESCRT I complex [Evidence IPI] [PMID 11511343]; GO_component: GO:0000813 - ESCRT I complex [Evidence IDA] [PMID 15044434]; GO_component: GO:0000813 - ESCRT I complex [Evidence IPI] [PMID 16615894]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 11511343]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0032403 - protein complex binding [Evidence IDA,IPI] [PMID 17215868]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP,IPI] [PMID 11511343]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 11511343]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-I subunit protein VPS28 complement(1197361..1198131) Sugiyamaella lignohabitans 30034296 AWJ20_2391 CDS POX1 NC_031674.1 1200110 1202251 D Fatty-acyl coenzyme A oxidase; involved in the fatty acid beta-oxidation pathway; localized to the peroxisomal matrix; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 11967269]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA,IEA]; GO_function: GO:0003995 - acyl-CoA dehydrogenase activity [Evidence IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence IEA,IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence ISA] [PMID 2189786]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12819196]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence IEA]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence ISA] [PMID 2189786]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; acyl-CoA oxidase 1200110..1202251 Sugiyamaella lignohabitans 30034297 AWJ20_2392 CDS AWJ20_2392 NC_031674.1 1204625 1205914 D uncharacterized protein 1204625..1205914 Sugiyamaella lignohabitans 30034298 AWJ20_2393 CDS SMM1 NC_031674.1 1214826 1215629 D Dihydrouridine synthase; member of a family of dihydrouridine synthases including Dus1p, Smm1p, Dus3p, and Dus4p; modifies uridine residues at position 20 of cytoplasmic tRNAs; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IDA] [PMID 12003496]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IMP] [PMID 14970222]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0002943 - tRNA dihydrouridine synthesis [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 12003496]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 14970222]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IGI] [PMID 12559567]; Smm1p 1214826..1215629 Sugiyamaella lignohabitans 30034299 AWJ20_2394 CDS XKS1 NC_031674.1 1217874 1219565 R Xylulokinase; converts D-xylulose and ATP to xylulose 5-phosphate and ADP; rate limiting step in fermentation of xylulose; required for xylose fermentation by recombinant S. cerevisiae strains; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0004856 - xylulokinase activity [Evidence IEA]; GO_function: GO:0004856 - xylulokinase activity [Evidence IMP,ISS] [PMID 9595677]; GO_process: GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0005998 - xylulose catabolic process [Evidence IDA] [PMID 10981687]; xylulokinase complement(1217874..1219565) Sugiyamaella lignohabitans 30034300 AWJ20_2395 CDS SPC1 NC_031674.1 1219869 1220156 R Subunit of the signal peptidase complex (SPC); SPC cleaves the signal sequence from proteins targeted to the endoplasmic reticulum (ER); homolog of the SPC12 subunit of mammalian signal peptidase complex; protein abundance increases in response to DNA replication stress; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005787 - signal peptidase complex [Evidence IEA]; GO_component: GO:0005787 - signal peptidase complex [Evidence IDA] [PMID 1846444]; GO_component: GO:0005787 - signal peptidase complex [Evidence IDA] [PMID 8910564]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0045047 - protein targeting to ER [Evidence IGI,IPI] [PMID 8663399]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006465 - signal peptide processing [Evidence IEA]; GO_process: GO:0006465 - signal peptide processing [Evidence IGI,IMP,ISS] [PMID 8663399]; Spc1p complement(1219869..1220156) Sugiyamaella lignohabitans 30034301 AWJ20_2396 CDS MCP2 NC_031674.1 1221178 1222974 R Mitochondrial hypothetical protein involved in lipid homeostasis; integral membrane protein that localizes to the mitochondrial inner membrane; involved in mitochondrial morphology; non-essential gene which interacts genetically with MDM10, and other members of the ERMES complex; transcription is periodic during the metabolic cycle; homologous to human aarF domain containing kinase, ADCK1; GO_component: GO:0032592 - integral component of mitochondrial membrane [Evidence IDA] [PMID 23781023]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 23781023]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0055088 - lipid homeostasis [Evidence IGI] [PMID 23781023]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence IGI,IMP] [PMID 23781023]; Mcp2p complement(1221178..1222974) Sugiyamaella lignohabitans 30034302 AWJ20_2397 CDS RMT2 NC_031674.1 1223668 1224993 D Arginine N5 methyltransferase; methylates ribosomal protein Rpl12 (L12) on Arg67; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17448464]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17448464]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016274 - protein-arginine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0019702 - protein-arginine N5-methyltransferase activity [Evidence IDA] [PMID 11856739]; GO_function: GO:0019702 - protein-arginine N5-methyltransferase activity [Evidence IMP] [PMID 9873020]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0035246 - peptidyl-arginine N-methylation [Evidence IEA]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IDA] [PMID 11856739]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IMP] [PMID 9873020]; Rmt2p 1223668..1224993 Sugiyamaella lignohabitans 30034303 AWJ20_2398 CDS ERG11 NC_031674.1 1225856 1227454 D Lanosterol 14-alpha-demethylase; catalyzes the C-14 demethylation of lanosterol to form 4,4''-dimethyl cholesta-8,14,24-triene-3-beta-ol in the ergosterol biosynthesis pathway; member of the cytochrome P450 family; associated and coordinately regulated with the P450 reductase Ncp1p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15951236]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_function: GO:0008398 - sterol 14-demethylase activity [Evidence IEA]; GO_function: GO:0008398 - sterol 14-demethylase activity [Evidence IDA] [PMID 9087488]; GO_process: GO:0070988 - demethylation [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; sterol 14-demethylase 1225856..1227454 Sugiyamaella lignohabitans 30034304 AWJ20_2399 CDS MNR2 NC_031674.1 1228151 1231531 R Vacuolar membrane protein required for magnesium homeostasis; putative magnesium transporter; has similarity to Alr1p and Alr2p, which mediate influx of Mg2+ and other divalent cations; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19720860]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence ISS] [PMID 9430719]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]; GO_process: GO:0010961 - cellular magnesium ion homeostasis [Evidence IMP] [PMID 19720860]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; putative Mg(2+) transporter MNR2 complement(1228151..1231531) Sugiyamaella lignohabitans 30034305 AWJ20_2400 CDS AWJ20_2400 NC_031674.1 1228659 1228877 D uncharacterized protein 1228659..1228877 Sugiyamaella lignohabitans 30034308 AWJ20_2401 CDS FCP1 NC_031674.1 1234103 1236961 D Carboxy-terminal domain (CTD) phosphatase; essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p); relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11003641]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA,IMP] [PMID 10445027]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 11904169]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA,IMP] [PMID 10445027]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 11904169]; GO_process: GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 16301539]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 10445027]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 12370301]; Fcp1p 1234103..1236961 Sugiyamaella lignohabitans 30034309 AWJ20_2402 CDS PRM15 NC_031674.1 1237917 1239839 D phosphoribomutase PRM15 1237917..1239839 Sugiyamaella lignohabitans 30034310 AWJ20_2403 CDS VAN1 NC_031674.1 1241032 1241889 D Component of the mannan polymerase I; complex contains Van1p and Mnn9p and is involved in the first steps of mannan synthesis; mutants are vanadate-resistant; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 9434768]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 12235155]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IDA,IMP] [PMID 9430634]; GO_process: GO:0040008 - regulation of growth [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Van1p 1241032..1241889 Sugiyamaella lignohabitans 30034311 AWJ20_2408 CDS MPD1 NC_031674.1 1247909 1249009 D Member of the protein disulfide isomerase (PDI) family; interacts with and inhibits the chaperone activity of Cne1p; MPD1 overexpression in a pdi1 null mutant suppresses defects in Pdi1p functions such as carboxypeptidase Y maturation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 16002399]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IGI,IMP,ISS] [PMID 11157982]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IGI,ISS] [PMID 11157982]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0019153 - protein-disulfide reductase (glutathione) activity [Evidence IDA] [PMID 16002399]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0006662 - glycerol ether metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IGI] [PMID 11157982]; protein disulfide isomerase MPD1 1247909..1249009 Sugiyamaella lignohabitans 30034316 AWJ20_2409 CDS RRP36 NC_031674.1 1251514 1252203 D Component of 90S preribosomes; involved in early cleavages of the 35S pre-rRNA and in production of the 40S ribosomal subunit; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 20038530]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 20038530]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000469 - cleavage involved in rRNA processing [Evidence IMP] [PMID 20038530]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 20038530]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp36p 1251514..1252203 Sugiyamaella lignohabitans 30034317 AWJ20_2410 CDS RDL2 NC_031674.1 1252809 1253321 R Protein with rhodanese activity; contains a rhodanese-like domain similar to Rdl1p, Uba4p, Tum1p, and Ych1p; overexpression causes a cell cycle delay; null mutant displays elevated frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IEA]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IDA] [PMID 19864628]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; Rdl2p complement(1252809..1253321) Sugiyamaella lignohabitans 30034319 AWJ20_2411 CDS YBP1 NC_031674.1 1254409 1256739 D Protein involved in cellular response to oxidative stress; required for oxidation of specific cysteine residues of transcription factor Yap1p, resulting in nuclear localization of Yap1p in response to stress; YBP1 has a paralog, YBP2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IDA] [PMID 12743123]; Ybp1p 1254409..1256739 Sugiyamaella lignohabitans 30034320 AWJ20_2412 CDS HPC2 NC_031674.1 1256980 1258521 R Subunit of the HIR complex; HIR is a nucleosome assembly complex involved in regulation of histone gene transcription; mutants display synthetic defects with subunits of FACT, a complex that allows passage of RNA Pol II through nucleosomes; GO_component: GO:0000417 - HIR complex [Evidence IDA,IPI] [PMID 16264190]; GO_component: GO:0000417 - HIR complex [Evidence IDA] [PMID 16303565]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12524332]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 16264190]; GO_function: GO:0031491 - nucleosome binding [Evidence IMP] [PMID 16264190]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16264190]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16303565]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 1406694]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 16449659]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hpc2p complement(1256980..1258521) Sugiyamaella lignohabitans 30034321 AWJ20_2413 CDS GAT1 NC_031674.1 1259199 1261634 R Transcriptional activator of nitrogen catabolite repression genes; contains a GATA-1-type zinc finger DNA-binding motif; activity and localization regulated by nitrogen limitation and Ure2p; different translational starts produce two major and two minor isoforms that are differentially regulated and localized; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10799523]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10799523]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 19380492]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence ISA] [PMID 7568152]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 9106207]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IMP] [PMID 19380492]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IGI] [PMID 7568152]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0090294 - nitrogen catabolite activation of transcription [Evidence IGI,IMP] [PMID 7568152]; GO_process: GO:0090294 - nitrogen catabolite activation of transcription [Evidence IGI,IMP] [PMID 8622686]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 7568152]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Gat1p complement(1259199..1261634) Sugiyamaella lignohabitans 30034322 AWJ20_2414 CDS AWJ20_2414 NC_031674.1 1265764 1267278 D uncharacterized protein 1265764..1267278 Sugiyamaella lignohabitans 30034323 AWJ20_2415 CDS AWJ20_2415 NC_031674.1 1268608 1270092 D uncharacterized protein 1268608..1270092 Sugiyamaella lignohabitans 30034324 AWJ20_2416 CDS QDR2 NC_031674.1 1272725 1274539 D Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; exports copper; has broad substrate specificity and can transport many mono- and divalent cations; transports a variety of drugs and is required for resistance to quinidine, barban, cisplatin, and bleomycin; contributes to potassium homeostasis; expression is regulated by copper; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 15215105]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IMP] [PMID 23106982]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IMP] [PMID 15215105]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IMP] [PMID 15649438]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0060003 - copper ion export [Evidence IMP] [PMID 23106982]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IMP] [PMID 15215105]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IMP] [PMID 15649438]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0010107 - potassium ion import [Evidence IGI,IMP] [PMID 17189489]; GO_process: GO:0006813 - potassium ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Qdr2p 1272725..1274539 Sugiyamaella lignohabitans 30034325 AWJ20_2417 CDS AWJ20_2417 NC_031674.1 1274681 1276531 R uncharacterized protein complement(1274681..1276531) Sugiyamaella lignohabitans 30034326 AWJ20_2418 CDS AWJ20_2418 NC_031674.1 1276801 1280871 R uncharacterized protein complement(1276801..1280871) Sugiyamaella lignohabitans 30034327 AWJ20_2419 CDS AWJ20_2419 NC_031674.1 1283360 1284340 D uncharacterized protein 1283360..1284340 Sugiyamaella lignohabitans 30034328 AWJ20_2420 CDS DIT2 NC_031674.1 1284583 1285950 R N-formyltyrosine oxidase; sporulation-specific microsomal enzyme involved in the production of N,N-bisformyl dityrosine required for spore wall maturation, homologous to cytochrome P-450s; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8183942]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA,IMP] [PMID 8183942]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Dit2p complement(1284583..1285950) Sugiyamaella lignohabitans 30034330 AWJ20_2422 CDS SNQ2 NC_031674.1 1288152 1291880 R Plasma membrane ATP-binding cassette (ABC) transporter; multidrug transporter involved in multidrug resistance and resistance to singlet oxygen species; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008559 - xenobiotic-transporting ATPase activity [Evidence TAS] [PMID 10581358]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042493 - response to drug [Evidence TAS] [PMID 11421285]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette transporter SNQ2 complement(1288152..1291880) Sugiyamaella lignohabitans 30034332 AWJ20_2423 CDS PDR12 NC_031674.1 1292034 1292681 R Plasma membrane ATP-binding cassette (ABC) transporter; weak-acid-inducible multidrug transporter required for weak organic acid resistance; induced by sorbate and benzoate and regulated by War1p; mutants exhibit sorbate hypersensitivity; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9687494]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0005342 - organic acid transmembrane transporter activity [Evidence IDA] [PMID 10419965]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0015849 - organic acid transport [Evidence IDA] [PMID 10419965]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette multidrug transporter PDR12 complement(1292034..1292681) Sugiyamaella lignohabitans 30034333 AWJ20_2424 CDS AWJ20_2424 NC_031674.1 1294391 1295758 R uncharacterized protein complement(1294391..1295758) Sugiyamaella lignohabitans 30034334 AWJ20_2425 CDS TRA1 NC_031674.1 1300606 1306854 D histone acetyltransferase TRA1 1300606..1306854 Sugiyamaella lignohabitans 30034335 AWJ20_2426 CDS TRA1 NC_031674.1 1307070 1311266 D histone acetyltransferase TRA1 1307070..1311266 Sugiyamaella lignohabitans 30034336 AWJ20_2427 CDS TRA1 NC_031674.1 1311555 1311896 D histone acetyltransferase TRA1 1311555..1311896 Sugiyamaella lignohabitans 30034337 AWJ20_2428 CDS DOA4 NC_031674.1 1312853 1316188 R Ubiquitin hydrolase that deubiquitinates ILV cargo proteins; required for recycling ubiquitin from proteasome-bound ubiquitinated intermediates, acts at the late endosome/prevacuolar compartment to recover ubiquitin from ubiquitinated membrane proteins en route to the vacuole; DOA4 has a paralog, UBP5, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 17145966]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000502 - proteasome complex [Evidence IPI] [PMID 10069815]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 19410548]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA,IMP] [PMID 8247125]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 9119204]; GO_process: GO:0010995 - free ubiquitin chain depolymerization [Evidence IDA] [PMID 19410548]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IGI] [PMID 23444383]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006275 - regulation of DNA replication [Evidence IMP] [PMID 8657109]; GO_process: GO:0010992 - ubiquitin homeostasis [Evidence IMP] [PMID 19410548]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17145966]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IMP] [PMID 17376168]; Doa4p complement(1312853..1316188) Sugiyamaella lignohabitans 30034338 AWJ20_2429 CDS LCB2 NC_031674.1 1317256 1319046 R Component of serine palmitoyltransferase; responsible along with Lcb1p for the first committed step in sphingolipid synthesis, which is the condensation of serine with palmitoyl-CoA to form 3-ketosphinganine; GO_component: GO:0035339 - SPOTS complex [Evidence IDA] [PMID 20182505]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0017059 - serine C-palmitoyltransferase complex [Evidence IMP] [PMID 1556076]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0004758 - serine C-palmitoyltransferase activity [Evidence IEA]; GO_function: GO:0004758 - serine C-palmitoyltransferase activity [Evidence IMP] [PMID 1556076]; GO_function: GO:0004758 - serine C-palmitoyltransferase activity [Evidence IGI] [PMID 8058731]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IMP] [PMID 1556076]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA,IEA]; serine C-palmitoyltransferase LCB2 complement(1317256..1319046) Sugiyamaella lignohabitans 30034339 AWJ20_2430 CDS TRL1 NC_031674.1 1321509 1323953 D tRNA ligase; required for tRNA splicing and for both splicing and translation of HAC1 mRNA in the UPR; has phosphodiesterase, polynucleotide kinase, and ligase activities; localized at the inner nuclear envelope and partially to polysomes; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 3312232]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 20844078]; GO_function: GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IDA] [PMID 6297798]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0051730 - GTP-dependent polyribonucleotide 5'-hydroxyl-kinase activity [Evidence IDA] [PMID 8428918]; GO_function: GO:0003972 - RNA ligase (ATP) activity [Evidence IEA,IEA]; GO_function: GO:0003972 - RNA ligase (ATP) activity [Evidence IDA] [PMID 3277966]; GO_function: GO:0003972 - RNA ligase (ATP) activity [Evidence IDA] [PMID 3512545]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0030969 - UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 8898194]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0032056 - positive regulation of translation in response to stress [Evidence IMP,IPI] [PMID 20844078]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IMP] [PMID 1537841]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IDA] [PMID 2207062]; tRNA ligase 1321509..1323953 Sugiyamaella lignohabitans 30034341 AWJ20_2431 CDS ARG3 NC_031674.1 1324199 1325152 R Ornithine carbamoyltransferase; also known as carbamoylphosphate:L-ornithine carbamoyltransferase; catalyzes the biosynthesis of the arginine precursor citrulline; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_function: GO:0016597 - amino acid binding [Evidence IEA]; GO_function: GO:0016743 - carboxyl- or carbamoyltransferase activity [Evidence IEA]; GO_function: GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]; GO_function: GO:0004585 - ornithine carbamoyltransferase activity [Evidence IDA] [PMID 7029528]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IMP] [PMID 2897249]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006591 - ornithine metabolic process [Evidence IEA]; ornithine carbamoyltransferase complement(1324199..1325152) Sugiyamaella lignohabitans 30034342 AWJ20_2432 CDS AWJ20_2432 NC_031674.1 1329038 1332046 D uncharacterized protein 1329038..1332046 Sugiyamaella lignohabitans 30034343 AWJ20_2433 CDS AWJ20_2433 NC_031674.1 1334633 1336444 R uncharacterized protein complement(1334633..1336444) Sugiyamaella lignohabitans 30034344 AWJ20_2434 CDS ZRT1 NC_031674.1 1337925 1339052 R High-affinity zinc transporter of the plasma membrane; responsible for the majority of zinc uptake; transcription is induced under low-zinc conditions by the Zap1p transcription factor; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IMP,ISS] [PMID 8637895]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000006 - high affinity zinc uptake transmembrane transporter activity [Evidence IMP,ISS] [PMID 8637895]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006830 - high-affinity zinc ion transport [Evidence IMP] [PMID 8637895]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0071577 - zinc ion transmembrane transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IEA]; high-affinity Zn(2+) transporter ZRT1 complement(1337925..1339052) Sugiyamaella lignohabitans 30034345 AWJ20_2435 CDS AWJ20_2435 NC_031674.1 1339972 1341039 D mitochondrial inner membrane protein 1339972..1341039 Sugiyamaella lignohabitans 30034346 AWJ20_2436 CDS AWJ20_2436 NC_031674.1 1342444 1343886 R uncharacterized protein complement(1342444..1343886) Sugiyamaella lignohabitans 30034347 AWJ20_2437 CDS AWJ20_2437 NC_031674.1 1344610 1345605 D uncharacterized protein 1344610..1345605 Sugiyamaella lignohabitans 30034348 AWJ20_2438 CDS AWJ20_2438 NC_031674.1 1346137 1347597 D beta-lactamase family protein 1346137..1347597 Sugiyamaella lignohabitans 30034349 AWJ20_2439 CDS AWJ20_2439 NC_031674.1 1347834 1349447 R uncharacterized protein complement(1347834..1349447) Sugiyamaella lignohabitans 30034350 AWJ20_2441 CDS AWJ20_2441 NC_031674.1 1353129 1354343 D uncharacterized protein 1353129..1354343 Sugiyamaella lignohabitans 30034353 AWJ20_2442 CDS AWJ20_2442 NC_031674.1 1354760 1355257 D activating signal cointegrator 1 complex subunit 3 1354760..1355257 Sugiyamaella lignohabitans 30034354 AWJ20_2443 CDS SLH1 NC_031674.1 1355476 1360569 D Putative RNA helicase related to Ski2p; involved in translation inhibition of non-poly(A) mRNAs; required for repressing propagation of dsRNA viruses; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0042788 - polysomal ribosome [Evidence IDA] [PMID 21076151]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence ISS] [PMID 9133744]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI] [PMID 21076151]; GO_process: GO:0051607 - defense response to virus [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IGI,IMP] [PMID 10922069]; GO_process: GO:0006417 - regulation of translation [Evidence IGI,IMP] [PMID 11438647]; Slh1p 1355476..1360569 Sugiyamaella lignohabitans 30034355 AWJ20_2444 CDS IRS4 NC_031674.1 1362015 1364837 D EH domain-containing protein; involved in regulating phosphatidylinositol 4,5-bisphosphate levels and autophagy; Irs4p and Tax4p bind and activate the PtdIns phosphatase Inp51p; Irs4p and Tax4p are involved in localizing Atg17p to the PAS; IRS4 has a paralog, TAX4, that arose from the whole genome duplication; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 18298591]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IGI] [PMID 18298591]; GO_process: GO:0006914 - autophagy [Evidence IGI] [PMID 18298591]; GO_process: GO:0009267 - cellular response to starvation [Evidence IGI] [PMID 18298591]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 10082585]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 15265867]; GO_process: GO:0048017 - inositol lipid-mediated signaling [Evidence IGI] [PMID 15265867]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; Irs4p 1362015..1364837 Sugiyamaella lignohabitans 30034356 AWJ20_2445 CDS AWJ20_2445 NC_031674.1 1365044 1367044 D uncharacterized protein 1365044..1367044 Sugiyamaella lignohabitans 30034357 AWJ20_2446 CDS AWJ20_2446 NC_031674.1 1367279 1367593 R uncharacterized protein complement(1367279..1367593) Sugiyamaella lignohabitans 30034358 AWJ20_2447 CDS AWJ20_2447 NC_031674.1 1379655 1380344 D uncharacterized protein 1379655..1380344 Sugiyamaella lignohabitans 30034359 AWJ20_2448 CDS SPE2 NC_031674.1 1382538 1383812 D S-adenosylmethionine decarboxylase; required for the biosynthesis of spermidine and spermine; cells lacking Spe2p require spermine or spermidine for growth in the presence of oxygen but not when grown anaerobically; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004014 - adenosylmethionine decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004014 - adenosylmethionine decarboxylase activity [Evidence IDA] [PMID 2266128]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0006557 - S-adenosylmethioninamine biosynthetic process [Evidence IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006596 - polyamine biosynthetic process [Evidence IEA]; GO_process: GO:0008295 - spermidine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008295 - spermidine biosynthetic process [Evidence IMP] [PMID 7929015]; GO_process: GO:0006597 - spermine biosynthetic process [Evidence IEA]; GO_process: GO:0006597 - spermine biosynthetic process [Evidence IMP] [PMID 7929015]; adenosylmethionine decarboxylase SPE2 1382538..1383812 Sugiyamaella lignohabitans 30034360 AWJ20_2449 CDS RKR1 NC_031674.1 1384879 1389171 D RING domain E3 ubiquitin ligase; involved in ubiquitin-mediated degradation of non-stop proteins; component of ribosome-bound RQC (ribosome quality control) complex required for degradation of polypeptides arising from stalled translation; degrades products of mRNAs lacking a termination codon regardless of a poly(A) tail; functional connections to chromatin modification; homolog of mouse Listerin, mutations in which reported to cause neurodegeneration; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23479637]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17283062]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 20835226]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 20835226]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 17283062]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IGI] [PMID 17283062]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 17283062]; GO_process: GO:0010498 - proteasomal protein catabolic process [Evidence IGI,IMP] [PMID 24261871]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 17283062]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 20835226]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23479637]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20835226]; ubiquitin-protein ligase RKR1 1384879..1389171 Sugiyamaella lignohabitans 30034361 AWJ20_2450 CDS MRPS28 NC_031674.1 1389433 1390296 D Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9445368]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein MRPS28 1389433..1390296 Sugiyamaella lignohabitans 30034363 AWJ20_2451 CDS MET2 NC_031674.1 1390647 1392146 R L-homoserine-O-acetyltransferase; catalyzes the conversion of homoserine to O-acetyl homoserine which is the first step of the methionine biosynthetic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0004414 - homoserine O-acetyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004414 - homoserine O-acetyltransferase activity [Evidence IDA,IMP] [PMID 3301801]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009092 - homoserine metabolic process [Evidence IDA,IMP] [PMID 3301801]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 6035500]; GO_process: GO:0000096 - sulfur amino acid metabolic process [Evidence IMP] [PMID 1101032]; homoserine O-acetyltransferase complement(1390647..1392146) Sugiyamaella lignohabitans 30034364 AWJ20_2452 CDS MTO1 NC_031674.1 1392417 1394504 R Mitochondrial protein; forms a heterodimer complex with Mss1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; required for respiration in paromomycin-resistant 15S rRNA mutants; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9774408]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070899 - mitochondrial tRNA wobble uridine modification [Evidence IMP] [PMID 15509579]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IEA]; Mto1p complement(1392417..1394504) Sugiyamaella lignohabitans 30034365 AWJ20_2453 CDS SAL1 NC_031674.1 1395456 1397246 D ADP/ATP transporter; member of the Ca2+-binding subfamily of mitochondrial carriers, with two EF-hand motifs; transport activity of either Sal1p or Pet9p is critical for viability; polymorphic in different S. cerevisiae strains; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005471 - ATP:ADP antiporter activity [Evidence IMP] [PMID 18485069]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 15238515]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0015866 - ADP transport [Evidence IMP] [PMID 18485069]; GO_process: GO:0015867 - ATP transport [Evidence IMP] [PMID 18485069]; GO_process: GO:0006839 - mitochondrial transport [Evidence IMP] [PMID 18485069]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ca(2+)-binding ATP:ADP antiporter SAL1 1395456..1397246 Sugiyamaella lignohabitans 30034366 AWJ20_2454 CDS FMP30 NC_031674.1 1397938 1399485 D Protein with a role in maintaining mitochondrial morphology; also involved in maintaining normal cardiolipin levels; mitochondrial inner membrane protein; proposed to be involved in N-acylethanolamine metabolism; related to mammalian N-acylPE-specific phospholipase D; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 21306442]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0070290 - N-acylphosphatidylethanolamine-specific phospholipase D activity [Evidence IEA]; GO_function: GO:0070290 - N-acylphosphatidylethanolamine-specific phospholipase D activity [Evidence ISS] [PMID 15878693]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0070291 - N-acylethanolamine metabolic process [Evidence IMP] [PMID 15878693]; GO_process: GO:0070292 - N-acylphosphatidylethanolamine metabolic process [Evidence IMP] [PMID 15878693]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; Fmp30p 1397938..1399485 Sugiyamaella lignohabitans 30034367 AWJ20_2455 CDS ECM31 NC_031674.1 1400554 1401573 R Ketopantoate hydroxymethyltransferase; required for pantothenic acid biosynthesis, converts 2-oxoisovalerate into 2-dehydropantoate; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IMP,ISS] [PMID 11154694]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(1400554..1401573) Sugiyamaella lignohabitans 30034368 AWJ20_2456 CDS AWJ20_2456 NC_031674.1 1403089 1404405 D Putative acyltransferase with similarity to Eeb1p and Eht1p; has a minor role in medium-chain fatty acid ethyl ester biosynthesis; may be involved in lipid metabolism and detoxification; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence ISS] [PMID 16361250]; GO_process: GO:0051792 - medium-chain fatty acid biosynthetic process [Evidence IGI] [PMID 16361250]; putative carboxylic ester hydrolase 1403089..1404405 Sugiyamaella lignohabitans 30034369 AWJ20_2457 CDS REV7 NC_031674.1 1404839 1405546 D Accessory subunit of DNA polymerase zeta; involved in translesion synthesis during post-replication repair; required for mutagenesis induced by DNA damage; involved in double-strand break repair; forms a complex with Rev3p, Pol31p and Pol32p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16452144]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 16546083]; GO_component: GO:0016035 - zeta DNA polymerase complex [Evidence IDA] [PMID 8658138]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 8658138]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 12514101]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 11313481]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IMP] [PMID 3897795]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IGI] [PMID 9765213]; Rev7p 1404839..1405546 Sugiyamaella lignohabitans 30034370 AWJ20_2458 CDS JLP1 NC_031674.1 1407765 1408904 D Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 1407765..1408904 Sugiyamaella lignohabitans 30034371 AWJ20_2459 CDS HER2 NC_031674.1 1409793 1410911 D Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex; involved in the formation of Q-tRNAQ; required for remodeling of ER caused by Hmg2p overexpression; similar to bacterial GatA glutamyl-tRNA amidotransferase; GO_component: GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]; GO_component: GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IDA] [PMID 19417106]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19417106]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA,IEA]; GO_function: GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA,IEA]; GO_function: GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 19417106]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IGI] [PMID 18667535]; GO_process: GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation [Evidence IEA]; GO_process: GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation [Evidence IDA] [PMID 19417106]; GO_process: GO:0032543 - mitochondrial translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA,IEA]; glutamyl-tRNA(Gln) amidotransferase subunit HER2 1409793..1410911 Sugiyamaella lignohabitans 30034372 AWJ20_2460 CDS YTA7 NC_031674.1 1411102 1412787 R Protein that localizes to chromatin; has a role in regulation of histone gene expression; has a bromodomain-like region that interacts with the N-terminal tail of histone H3, and an ATPase domain; relocalizes to the cytosol in response to hypoxia; potentially phosphorylated by Cdc28p; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0042406 - extrinsic component of endoplasmic reticulum membrane [Evidence IDA] [PMID 19416104]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19416104]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 18493054]; GO_function: GO:0003682 - chromatin binding [Evidence IDA,IMP] [PMID 19581291]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 16079223]; GO_function: GO:0042393 - histone binding [Evidence IDA,IMP] [PMID 19581291]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IMP] [PMID 15824130]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IMP] [PMID 16079223]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IMP] [PMID 19581291]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 18493054]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 19683497]; Yta7p complement(1411102..1412787) Sugiyamaella lignohabitans 30034374 AWJ20_2461 CDS YTA7 NC_031674.1 1412844 1415582 R Protein that localizes to chromatin; has a role in regulation of histone gene expression; has a bromodomain-like region that interacts with the N-terminal tail of histone H3, and an ATPase domain; relocalizes to the cytosol in response to hypoxia; potentially phosphorylated by Cdc28p; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0042406 - extrinsic component of endoplasmic reticulum membrane [Evidence IDA] [PMID 19416104]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19416104]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 18493054]; GO_function: GO:0003682 - chromatin binding [Evidence IDA,IMP] [PMID 19581291]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 16079223]; GO_function: GO:0042393 - histone binding [Evidence IDA,IMP] [PMID 19581291]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IMP] [PMID 15824130]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IMP] [PMID 16079223]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IMP] [PMID 19581291]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 18493054]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 19683497]; Yta7p complement(1412844..1415582) Sugiyamaella lignohabitans 30034375 AWJ20_2462 CDS SRP101 NC_031674.1 1416804 1418765 D Signal recognition particle (SRP) receptor alpha subunit; contain GTPase domains; involved in SRP-dependent protein targeting; interacts with the beta subunit, Srp102p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 9679135]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005785 - signal recognition particle receptor complex [Evidence IPI] [PMID 9679135]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IPI] [PMID 7844142]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0005047 - signal recognition particle binding [Evidence IMP,ISS] [PMID 1327299]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IC,TAS] [PMID 7844142]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 1327299]; GO_process: GO:0006810 - transport [Evidence IEA]; Signal recognition particle receptor subunit alpha 1416804..1418765 Sugiyamaella lignohabitans 30034376 AWJ20_2463 CDS PRY2 NC_031674.1 1419680 1420495 R Sterol binding protein involved in the export of acetylated sterols; secreted glycoprotein and member of the CAP protein superfamily (cysteine-rich secretory proteins (CRISP), antigen 5, and pathogenesis related 1 proteins); sterol export function is redundant with that of PRY1; may be involved in detoxification of hydrophobic compounds; PRY2 has a paralog, PRY1, that arose from the whole genome duplication; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 11935221]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0032934 - sterol binding [Evidence IDA] [PMID 23027975]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0015918 - sterol transport [Evidence IGI,IMP] [PMID 23027975]; GO_process: GO:0006810 - transport [Evidence IEA]; Pry2p complement(1419680..1420495) Sugiyamaella lignohabitans 30034377 AWJ20_2464 CDS YPT1 NC_031674.1 1427284 1428051 R Rab family GTPase; involved in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p); binds to unspliced HAC1 mRNA; regulates unfolded protein response (UPR) by promoting the decay of HAC1 RNA; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 10747087]; GO_component: GO:0005795 - Golgi stack [Evidence IDA] [PMID 12802060]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IDA] [PMID 23129774]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10747087]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 20375281]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 20059749]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 3311726]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 9447979]; GO_function: GO:0000149 - SNARE binding [Evidence IDA,IPI] [PMID 18388317]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0090114 - COPII-coated vesicle budding [Evidence IMP] [PMID 15689495]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20375281]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 15689495]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 2504726]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 7593181]; GO_process: GO:0048194 - Golgi vesicle budding [Evidence IGI] [PMID 18388317]; GO_process: GO:0048211 - Golgi vesicle docking [Evidence IMP] [PMID 9545229]; GO_process: GO:0035494 - SNARE complex disassembly [Evidence IMP] [PMID 9157884]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IMP] [PMID 20059749]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 20059749]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20375281]; GO_process: GO:1990261 - pre-mRNA catabolic process [Evidence IMP] [PMID 22844259]; GO_process: GO:0006461 - protein complex assembly [Evidence IDA] [PMID 8603910]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:1900101 - regulation of endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 22844259]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IGI,IMP] [PMID 18388317]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Rab family GTPase YPT1 complement(1427284..1428051) Sugiyamaella lignohabitans 30034378 AWJ20_2465 CDS GPA2 NC_031674.1 1430198 1431658 D Subunit of the G protein involved in pheromone response; GTP-binding alpha subunit of the heterotrimeric G protein; negatively regulates the mating pathway by sequestering G(beta)gamma and by triggering an adaptive response; activates Vps34p at the endosome; protein abundance increases in response to DNA replication stress; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 16839886]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IBA]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IDA,IPI] [PMID 11394869]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IMP] [PMID 2105453]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8756677]; GO_function: GO:0031683 - G-protein beta/gamma-subunit complex binding [Evidence IBA,IEA]; GO_function: GO:0001664 - G-protein coupled receptor binding [Evidence IBA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11394869]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 1900495]; GO_function: GO:0019001 - guanyl nucleotide binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IBA,IEA,IEA]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 12556475]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 2105453]; GO_process: GO:0007189 - adenylate cyclase-activating G-protein coupled receptor signaling pathway [Evidence IBA,IEA]; GO_process: GO:0031684 - heterotrimeric G-protein complex cycle [Evidence IMP] [PMID 2107073]; GO_process: GO:0048017 - inositol lipid-mediated signaling [Evidence IMP] [PMID 16839886]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IMP] [PMID 19386762]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 19386762]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 3113739]; GO_process: GO:0071701 - regulation of MAPK export from nucleus [Evidence IMP] [PMID 12556475]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA,IEA]; guanine nucleotide-binding protein subunit alpha 1430198..1431658 Sugiyamaella lignohabitans 30034379 AWJ20_2466 CDS SEC7 NC_031674.1 1431905 1433332 R Arf family guanine nucleotide exchange factor SEC7 complement(1431905..1433332) Sugiyamaella lignohabitans 30034380 AWJ20_2467 CDS SEC7 NC_031674.1 1433472 1436852 R Arf family guanine nucleotide exchange factor SEC7 complement(1433472..1436852) Sugiyamaella lignohabitans 30034381 AWJ20_2468 CDS TOK1 NC_031674.1 1438640 1441702 D Outward-rectifier potassium channel of the plasma membrane; has two pore domains in tandem, each of which forms a functional channel permeable to potassium; carboxy tail functions to prevent inner gate closures; target of K1 toxin; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 7651518]; GO_function: GO:0005267 - potassium channel activity [Evidence IEA]; GO_function: GO:0005267 - potassium channel activity [Evidence IDA,IMP,ISS] [PMID 7651518]; GO_function: GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO_function: GO:0005249 - voltage-gated potassium channel activity [Evidence IMP] [PMID 16133265]; GO_process: GO:0030007 - cellular potassium ion homeostasis [Evidence IDA,IMP] [PMID 7651518]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0071805 - potassium ion transmembrane transport [Evidence IEA]; GO_process: GO:0034765 - regulation of ion transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tok1p 1438640..1441702 Sugiyamaella lignohabitans 30034382 AWJ20_2469 CDS SDH2 NC_031674.1 1443073 1443891 R Iron-sulfur protein subunit of succinate dehydrogenase; the complex couples the oxidation of succinate to the transfer of electrons to ubiquinone as part of the TCA cycle and the mitochondrial respiratory chain; other members are Sdh1p, Sdh3p, and Sdh4p; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23509072]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IDA] [PMID 1939170]; GO_component: GO:0005749 - mitochondrial respiratory chain complex II [Evidence IDA] [PMID 9822678]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0051538 - 3 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IEA]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IDA] [PMID 13445213]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IGI,IMP] [PMID 16232921]; GO_process: GO:0045333 - cellular respiration [Evidence IGI,IMP] [PMID 16232921]; GO_process: GO:0006121 - mitochondrial electron transport, succinate to ubiquinone [Evidence TAS] [PMID 9929002]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IMP] [PMID 10224250]; succinate dehydrogenase iron-sulfur protein subunit SDH2 complement(1443073..1443891) Sugiyamaella lignohabitans 30034383 AWJ20_2470 CDS YUH1 NC_031674.1 1449040 1449765 D Ubiquitin C-terminal hydrolase; cleaves ubiquitin-protein fusions to generate monomeric ubiquitin; hydrolyzes the peptide bond at the C-terminus of ubiquitin; also the major processing enzyme for the ubiquitin-like protein Rub1p; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 1429680]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 1429680]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0010992 - ubiquitin homeostasis [Evidence IC] [PMID 1429680]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Yuh1p 1449040..1449765 Sugiyamaella lignohabitans 30034385 AWJ20_2471 CDS THP3 NC_031674.1 1449968 1451440 R Protein that may have a role in transcription elongation; forms a complex with Csn12p that is recruited to transcribed genes; possibly involved in splicing based on pre-mRNA accumulation defect for many intron-containing genes; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0035327 - transcriptionally active chromatin [Evidence IDA] [PMID 21149575]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 19061648]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Thp3p complement(1449968..1451440) Sugiyamaella lignohabitans 30034386 AWJ20_2472 CDS AWJ20_2472 NC_031674.1 1452990 1454114 D L-asparaginase (predicted) 1452990..1454114 Sugiyamaella lignohabitans 30034387 AWJ20_2473 CDS YPK3 NC_031674.1 1455254 1456816 D putative protein kinase YPK3 1455254..1456816 Sugiyamaella lignohabitans 30034388 AWJ20_2474 CDS TFC4 NC_031674.1 1457873 1460890 D transcription factor TFIIIC subunit TFC4 1457873..1460890 Sugiyamaella lignohabitans 30034389 AWJ20_2475 CDS SPE3 NC_031674.1 1461845 1462726 D Spermidine synthase; involved in biosynthesis of spermidine and also in biosynthesis of pantothenic acid; spermidine is required for growth of wild-type cells; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004766 - spermidine synthase activity [Evidence IEA]; GO_function: GO:0004766 - spermidine synthase activity [Evidence IMP,ISS] [PMID 9073064]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006596 - polyamine biosynthetic process [Evidence IEA]; GO_process: GO:0008295 - spermidine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008295 - spermidine biosynthetic process [Evidence IMP] [PMID 9073064]; spermidine synthase 1461845..1462726 Sugiyamaella lignohabitans 30034390 AWJ20_2476 CDS mis18 NC_031674.1 1463381 1463761 D kinetochore protein Mis18 1463381..1463761 Sugiyamaella lignohabitans 30034391 AWJ20_2477 CDS FAF1 NC_031674.1 1464622 1464918 R Protein required for pre-rRNA processing; also required for 40S ribosomal subunit assembly; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15078877]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15178413]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15078877]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15178413]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Faf1p complement(1464622..1464918) Sugiyamaella lignohabitans 30034392 AWJ20_2478 CDS PDA1 NC_031674.1 1466907 1468100 D E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex; catalyzes the direct oxidative decarboxylation of pyruvate to acetyl-CoA; phosphorylated; regulated by glucose; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA] [PMID 2007123]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 7589446]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA,IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IMP] [PMID 11589696]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA] [PMID 7947791]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 24603354]; pyruvate dehydrogenase (acetyl-transferring) subunit E1 alpha 1466907..1468100 Sugiyamaella lignohabitans 30034393 AWJ20_2479 CDS RAS2 NC_031674.1 1472024 1472515 D GTP-binding protein; regulates nitrogen starvation response, sporulation, and filamentous growth; farnesylation and palmitoylation required for activity and localization to plasma membrane; homolog of mammalian Ras proto-oncogenes; RAS2 has a paralog, RAS1, that arose from the whole genome duplication; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 22575457]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 22575457]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23127800]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11914276]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 20162532]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23127800]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 6438624]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 8106517]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0007190 - activation of adenylate cyclase activity [Evidence IDA] [PMID 8106517]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 2558958]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 2981630]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 3891097]; GO_process: GO:0000411 - positive regulation of transcription by galactose [Evidence IMP] [PMID 16292676]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IGI] [PMID 12782684]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 1547504]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 15917658]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 12839995]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 8034612]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Ras family GTPase RAS2 1472024..1472515 Sugiyamaella lignohabitans 30034394 AWJ20_2480 CDS VTC2 NC_031674.1 1474040 1476277 D Subunit of vacuolar transporter chaperone (VTC) complex; involved in membrane trafficking, vacuolar polyphosphate accumulation, microautophagy and non-autophagic vacuolar fusion; VTC2 has a paralog, VTC3, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17079729]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 11823419]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0033254 - vacuolar transporter chaperone complex [Evidence IPI] [PMID 11823419]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016237 - microautophagy [Evidence IDA,IMP] [PMID 17079729]; GO_process: GO:0006797 - polyphosphate metabolic process [Evidence IGI,IMP] [PMID 11102525]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 10480897]; GO_process: GO:0007034 - vacuolar transport [Evidence IDA,IMP] [PMID 17079729]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP,IPI] [PMID 11823419]; Vtc2p 1474040..1476277 Sugiyamaella lignohabitans 30034396 AWJ20_2481 CDS BEM1 NC_031674.1 1477388 1479493 R phosphatidylinositol-3-phosphate-binding protein BEM1 complement(1477388..1479493) Sugiyamaella lignohabitans 30034397 AWJ20_2482 CDS MET22 NC_031674.1 1482168 1483235 D Bisphosphate-3'-nucleotidase; involved in salt tolerance and methionine biogenesis; dephosphorylates 3'-phosphoadenosine-5'-phosphate and 3'-phosphoadenosine-5'-phosphosulfate, intermediates of the sulfate assimilation pathway; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IEA,IEA]; GO_function: GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IDA] [PMID 7809627]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0042538 - hyperosmotic salinity response [Evidence IMP] [PMID 8393782]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 8393782]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0000103 - sulfate assimilation [Evidence IMP] [PMID 8910555]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence IEA]; Met22p 1482168..1483235 Sugiyamaella lignohabitans 30034398 AWJ20_2483 CDS KTR1 NC_031674.1 1495183 1496370 R Alpha-1,2-mannosyltransferase; involved in O- and N-linked protein glycosylation; type II membrane protein; member of the KRE2/MNT1 mannosyltransferase family; relocalizes from vacuole to cytoplasm upon DNA replication stress; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8631921]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IDA] [PMID 9020857]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IMP] [PMID 9182588]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IGI] [PMID 9182588]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IGI] [PMID 9182588]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; alpha-1,2-mannosyltransferase KTR1 complement(1495183..1496370) Sugiyamaella lignohabitans 30034399 AWJ20_2484 CDS ALG6 NC_031674.1 1498471 1500624 D Alpha 1,3 glucosyltransferase; involved in transfer of oligosaccharides from dolichyl pyrophosphate to asparagine residues of proteins during N-linked protein glycosylation; mutations in human ortholog are associated with disease; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IMP] [PMID 8877369]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0042281 - dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity [Evidence IMP] [PMID 10336995]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IMP] [PMID 8877369]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 15794922]; GO_process: GO:0006490 - oligosaccharide-lipid intermediate biosynthetic process [Evidence IMP] [PMID 10336995]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 8877369]; dolichyl-P-Glc:Man(9)GlcNAc(2)-PP-dolichol alpha-1,3-glucosyltransferase 1498471..1500624 Sugiyamaella lignohabitans 30034400 AWJ20_2485 CDS AWJ20_2485 NC_031674.1 1501294 1502202 R Cell wall endo-beta-1,3-glucanase complement(1501294..1502202) Sugiyamaella lignohabitans 30034401 AWJ20_2486 CDS AWJ20_2486 NC_031674.1 1503425 1503946 R Cell wall endo-beta-1,3-glucanase complement(1503425..1503946) Sugiyamaella lignohabitans 30034402 AWJ20_2487 CDS COX18 NC_031674.1 1506338 1507327 D Protein required for membrane insertion of C-terminus of Cox2p; mitochondrial integral inner membrane protein; interacts genetically and physically with Mss2p and Pnt1p; similar to S. cerevisiae Oxa1, N. crassa Oxa2p, and E. coli YidC; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 11950926]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0032977 - membrane insertase activity [Evidence IMP,ISS] [PMID 11950926]; GO_function: GO:0032977 - membrane insertase activity [Evidence IPI] [PMID 17452441]; GO_function: GO:0032977 - membrane insertase activity [Evidence IGI] [PMID 17922846]; GO_process: GO:0051205 - protein insertion into membrane [Evidence IEA]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IGI,IMP] [PMID 11950926]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IPI] [PMID 17452441]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IGI] [PMID 17922846]; Cox18p 1506338..1507327 Sugiyamaella lignohabitans 30034403 AWJ20_2488 CDS AWJ20_2488 NC_031674.1 1508579 1511878 R uncharacterized protein complement(1508579..1511878) Sugiyamaella lignohabitans 30034404 AWJ20_2489 CDS MYO1 NC_031674.1 1512281 1515016 R Type II myosin heavy chain; required for wild-type cytokinesis and cell separation; localizes to the actomyosin ring; binds to myosin light chains Mlc1p and Mlc2p through its IQ1 and IQ2 motifs respectively; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9442111]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9732290]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 9442111]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 9732290]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9732290]; GO_component: GO:0016460 - myosin II complex [Evidence IPI] [PMID 15210731]; GO_component: GO:0016459 - myosin complex [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0000146 - microfilament motor activity [Evidence ISS] [PMID 9519900]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000915 - actomyosin contractile ring assembly [Evidence IMP] [PMID 9732290]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IMP] [PMID 16148042]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IEP] [PMID 9442111]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IEP] [PMID 9732290]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 12589071]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 3322809]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 9732290]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; myosin 1 complement(1512281..1515016) Sugiyamaella lignohabitans 30034405 AWJ20_2490 CDS AWJ20_2490 NC_031674.1 1515055 1515438 R uncharacterized protein complement(1515055..1515438) Sugiyamaella lignohabitans 30034407 AWJ20_2491 CDS THR1 NC_031674.1 1515724 1516782 R Homoserine kinase; conserved protein required for threonine biosynthesis; expression is regulated by the GCN4-mediated general amino acid control pathway; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004413 - homoserine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004413 - homoserine kinase activity [Evidence IDA] [PMID 2165904]; GO_function: GO:0004413 - homoserine kinase activity [Evidence ISS] [PMID 8973190]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009092 - homoserine metabolic process [Evidence IDA] [PMID 2165904]; GO_process: GO:0006549 - isoleucine metabolic process [Evidence TAS] [PMID 8973190]; GO_process: GO:0006555 - methionine metabolic process [Evidence TAS] [PMID 8973190]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IMP] [PMID 17247984]; GO_process: GO:0006566 - threonine metabolic process [Evidence IEA]; homoserine kinase complement(1515724..1516782) Sugiyamaella lignohabitans 30034408 AWJ20_2492 CDS MAS2 NC_031674.1 1517357 1518853 D Larger subunit of the mitochondrial processing protease (MPP); essential processing enzyme that cleaves the N-terminal targeting sequences from mitochondrially imported proteins; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0017087 - mitochondrial processing peptidase complex [Evidence IDA] [PMID 2905264]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IDA] [PMID 2905264]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006627 - protein processing involved in protein targeting to mitochondrion [Evidence IMP] [PMID 3061808]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Mas2p 1517357..1518853 Sugiyamaella lignohabitans 30034409 AWJ20_2493 CDS SEC62 NC_031674.1 1519095 1519925 R Sec63 complex subunit SEC62 complement(1519095..1519925) Sugiyamaella lignohabitans 30034410 AWJ20_2494 CDS FMP41 NC_031674.1 1521589 1522197 D hypothetical protein; GFP-fusion protein is induced in response to the DNA-damaging agent MMS; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Fmp41p 1521589..1522197 Sugiyamaella lignohabitans 30034411 AWJ20_2495 CDS MTC5 NC_031674.1 1522627 1526640 D Subunit of the SEA (Seh1-associated) complex; SEA is a coatomer-related complex that associates dynamically with the vacuole; has N-terminal WD-40 repeats and a C-terminal RING motif; mtc5 is synthetically sick with cdc13-1; relative distribution to vacuolar membrane punctae decreases upon DNA replication stress; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0097042 - extrinsic component of fungal-type vacuolar membrane [Evidence IDA] [PMID 21454883]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mtc5p 1522627..1526640 Sugiyamaella lignohabitans 30034412 AWJ20_2496 CDS TAF1 NC_031674.1 1526854 1529943 D TFIID subunit, involved in RNA pol II transcription initiation; possesses in vitro histone acetyltransferase activity but its role in vivo appears to be minor; involved in promoter binding and G1/S progression; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA] [PMID 11677244]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10817999]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10818000]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 8980232]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0032947 - protein complex scaffold [Evidence IDA,IMP] [PMID 15143185]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 9844639]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 10713163]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12600943]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9288741]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9288742]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf1p 1526854..1529943 Sugiyamaella lignohabitans 30034413 AWJ20_2497 CDS MAK11 NC_031674.1 1530754 1532079 R Protein involved in an early step of 60S ribosomal subunit biogenesis; essential for cell growth and replication of killer M1 dsRNA virus; contains four beta-transducin repeats; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 2826479]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17308036]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17308036]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IGI,IMP,IPI] [PMID 17308036]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 7739558]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Mak11p complement(1530754..1532079) Sugiyamaella lignohabitans 30034414 AWJ20_2498 CDS ARO1 NC_031674.1 1532557 1533159 D Pentafunctional arom protein; catalyzes steps 2 through 6 in the biosynthesis of chorismate, which is a precursor to aromatic amino acids; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0004765 - shikimate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004765 - shikimate kinase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence TAS] [PMID 1943992]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; pentafunctional protein ARO1p 1532557..1533159 Sugiyamaella lignohabitans 30034415 AWJ20_2499 CDS ARO1 NC_031674.1 1533336 1537340 D Pentafunctional arom protein; catalyzes steps 2 through 6 in the biosynthesis of chorismate, which is a precursor to aromatic amino acids; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003856 - 3-dehydroquinate synthase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0004765 - shikimate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004765 - shikimate kinase activity [Evidence IDA] [PMID 6355828]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence TAS] [PMID 1943992]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; pentafunctional protein ARO1p 1533336..1537340 Sugiyamaella lignohabitans 30034416 AWJ20_2500 CDS AWJ20_2500 NC_031674.1 1539419 1540339 D hydrophobic surface binding protein A 1539419..1540339 Sugiyamaella lignohabitans 30034419 AWJ20_2501 CDS SNU114 NC_031674.1 1541244 1544048 D GTPase component of U5 snRNP involved in mRNA splicing via spliceosome; binds directly to U5 snRNA; proposed to be involved in conformational changes of the spliceosome; similarity to ribosomal translocation factor EF-2; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720285]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISS] [PMID 9233818]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IMP,ISS] [PMID 9233818]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 9848662]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IGI] [PMID 15911574]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 9233818]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IMP] [PMID 16540695]; GO_process: GO:0000388 - spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) [Evidence IMP] [PMID 16540695]; U5 snRNP GTPase SNU114 1541244..1544048 Sugiyamaella lignohabitans 30034420 AWJ20_2502 CDS EBP2 NC_031674.1 1544153 1545367 R Required for 25S rRNA maturation and 60S ribosomal subunit assembly; localizes to the nucleolus and in foci along nuclear periphery; constituent of 66S pre-ribosomal particles; cooperates with Rrs1p and Mps3p to mediate telomere clustering by binding Sir4p, but is not involved in telomere tethering; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 21822217]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10849420]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000280 - nuclear division [Evidence IMP] [PMID 15515129]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 10849420]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Ebp2p complement(1544153..1545367) Sugiyamaella lignohabitans 30034421 AWJ20_2503 CDS ERG20 NC_031674.1 1545638 1545982 D Farnesyl pyrophosphate synthetase; has both dimethylallyltranstransferase and geranyltranstransferase activities; catalyzes the formation of C15 farnesyl pyrophosphate units for isoprenoid and sterol biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19416104]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 19416104]; GO_function: GO:0004161 - dimethylallyltranstransferase activity [Evidence IEA]; GO_function: GO:0004161 - dimethylallyltranstransferase activity [Evidence IDA] [PMID 2681213]; GO_function: GO:0004337 - geranyltranstransferase activity [Evidence IEA]; GO_function: GO:0004337 - geranyltranstransferase activity [Evidence IDA] [PMID 2681213]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 1779710]; GO_process: GO:0045337 - farnesyl diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0045337 - farnesyl diphosphate biosynthetic process [Evidence IDA] [PMID 2681213]; GO_process: GO:0033384 - geranyl diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IDA] [PMID 2681213]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; bifunctional (2E,6E)-farnesyl diphosphate synthase/dimethylallyltranstransferase 1545638..1545982 Sugiyamaella lignohabitans 30034422 AWJ20_2504 CDS ERG20 NC_031674.1 1546065 1546757 D Farnesyl pyrophosphate synthetase; has both dimethylallyltranstransferase and geranyltranstransferase activities; catalyzes the formation of C15 farnesyl pyrophosphate units for isoprenoid and sterol biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19416104]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 19416104]; GO_function: GO:0004161 - dimethylallyltranstransferase activity [Evidence IEA]; GO_function: GO:0004161 - dimethylallyltranstransferase activity [Evidence IDA] [PMID 2681213]; GO_function: GO:0004337 - geranyltranstransferase activity [Evidence IEA]; GO_function: GO:0004337 - geranyltranstransferase activity [Evidence IDA] [PMID 2681213]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 1779710]; GO_process: GO:0045337 - farnesyl diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0045337 - farnesyl diphosphate biosynthetic process [Evidence IDA] [PMID 2681213]; GO_process: GO:0033384 - geranyl diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IDA] [PMID 2681213]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; bifunctional (2E,6E)-farnesyl diphosphate synthase/dimethylallyltranstransferase 1546065..1546757 Sugiyamaella lignohabitans 30034423 AWJ20_2505 CDS MDN1 NC_031674.1 1546924 1552992 R Huge dynein-related AAA-type ATPase (midasin); forms extended pre-60S particle with the Rix1 complex (Rix1p-Ipi1p-Ipi3p); acts in removal of ribosomal biogenesis factors at successive steps of pre-60S assembly and export from nucleus; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15528184]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12102729]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 12102729]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 11583615]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 12374754]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 15528184]; AAA family ATPase midasin complement(1546924..1552992) Sugiyamaella lignohabitans 30034424 AWJ20_2506 CDS MDN1 NC_031674.1 1553653 1561960 R Huge dynein-related AAA-type ATPase (midasin); forms extended pre-60S particle with the Rix1 complex (Rix1p-Ipi1p-Ipi3p); acts in removal of ribosomal biogenesis factors at successive steps of pre-60S assembly and export from nucleus; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15528184]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12102729]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 12102729]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12837249]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 11583615]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IPI] [PMID 12374754]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 15528184]; AAA family ATPase midasin complement(join(1553653..1553671,1553934..1561960)) Sugiyamaella lignohabitans 30034425 AWJ20_2507 CDS REX3 NC_031674.1 1564247 1566082 D RNA exonuclease; required for maturation of the RNA component of RNase MRP; functions redundantly with Rnh70p and Rex2p in processing of U5 snRNA and RNase P RNA; member of RNase D family of exonucleases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008408 - 3'-5' exonuclease activity [Evidence ISS] [PMID 9396823]; GO_function: GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IMP] [PMID 10716935]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IGI] [PMID 10716935]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 10716935]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IMP] [PMID 10716935]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Rex3p 1564247..1566082 Sugiyamaella lignohabitans 30034426 AWJ20_2509 CDS GRE2 NC_031674.1 1570621 1571655 D 3-methylbutanal reductase and NADPH-dependent methylglyoxal reductase; stress induced (osmotic, ionic, oxidative, heat shock and heavy metals); regulated by the HOG pathway; restores resistance to glycolaldehyde by coupling reduction of glycolaldehyde to ethylene glycol and oxidation of NADPH to NADP+; protein abundance increases in response to DNA replication stress; methylglyoxal reductase (NADPH-dependent) is also known as D-lactaldehyde dehydrogenase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12206772]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12206772]; GO_function: GO:0046568 - 3-methylbutanol:NAD(P) oxidoreductase activity [Evidence IEA]; GO_function: GO:0046568 - 3-methylbutanol:NAD(P) oxidoreductase activity [Evidence IMP] [PMID 16999827]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0043892 - methylglyoxal reductase (NADPH-dependent) activity [Evidence IEA]; GO_function: GO:0043892 - methylglyoxal reductase (NADPH-dependent) activity [Evidence IDA] [PMID 12722185]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0008204 - ergosterol metabolic process [Evidence IGI,IMP] [PMID 16598690]; GO_process: GO:0030447 - filamentous growth [Evidence IMP] [PMID 16999827]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; methylglyoxal reductase (NADPH-dependent) GRE2 1570621..1571655 Sugiyamaella lignohabitans 30034428 AWJ20_2510 CDS AFI1 NC_031674.1 1573923 1576328 D Arf3p polarization-specific docking factor; required for the polarized distribution of the ADP-ribosylation factor, Arf3p; participates in polarity development and maintenance of a normal haploid budding pattern; interacts with Cnm7p; GO_component: GO:0005938 - cell cortex [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 18397879]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 14515169]; GO_component: GO:0005634 - nucleus [Evidence IGI] [PMID 18397879]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP] [PMID 14515169]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 18397879]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI,IMP] [PMID 18397879]; GO_process: GO:0008105 - asymmetric protein localization [Evidence IMP] [PMID 18397879]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 18397879]; Afi1p 1573923..1576328 Sugiyamaella lignohabitans 30034430 AWJ20_2511 CDS SEE1 NC_031674.1 1577883 1578599 D Efm4p 1577883..1578599 Sugiyamaella lignohabitans 30034431 AWJ20_2512 CDS YRB2 NC_031674.1 1578884 1580509 R hypothetical protein; involved in nuclear processes of the Ran-GTPase cycle; involved in nuclear protein export; contains Ran Binding Domain and FxFG repeats; interacts with Srm1p, GTP-Gsp1p, Rna1p and Crm1p; relocalizes to the cytosol in response to hypoxia; not essential for viability; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9121474]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9395535]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0046907 - intracellular transport [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 9636166]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 17904525]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IMP] [PMID 12082158]; GO_process: GO:0006810 - transport [Evidence IEA]; Yrb2p complement(1578884..1580509) Sugiyamaella lignohabitans 30034432 AWJ20_2513 CDS KAR3 NC_031674.1 1583496 1585196 D Minus-end-directed microtubule motor; functions in mitosis and meiosis, localizes to the spindle pole body and localization is dependent on functional Cik1p, required for nuclear fusion during mating; potential Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 2138512]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000922 - spindle pole [Evidence IDA] [PMID 14562095]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 11729143]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 2138512]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 8106549]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 22734002]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0008569 - minus-end-directed microtubule motor activity [Evidence IDA] [PMID 8041770]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 16107877]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IMP] [PMID 2138512]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IDA,IMP] [PMID 11729143]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IGI] [PMID 9201713]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 14742714]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 16380440]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 19386762]; GO_process: GO:0000743 - nuclear migration involved in conjugation with cellular fusion [Evidence IMP] [PMID 2138512]; Kar3p 1583496..1585196 Sugiyamaella lignohabitans 30034433 AWJ20_2514 CDS AWJ20_2514 NC_031674.1 1585703 1585966 R uncharacterized protein complement(1585703..1585966) Sugiyamaella lignohabitans 30034434 AWJ20_2515 CDS AWJ20_2515 NC_031674.1 1587045 1587971 D uncharacterized protein 1587045..1587971 Sugiyamaella lignohabitans 30034435 AWJ20_2516 CDS ZPR1 NC_031674.1 1588882 1590405 R Essential protein with two zinc fingers; present in the nucleus of growing cells but relocates to the cytoplasm in starved cells via a process mediated by Cpr1p; binds to translation elongation factor eEF-1 (Tef1p); relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9852145]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852145]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 17704259]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009267 - cellular response to starvation [Evidence IMP] [PMID 12242280]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IMP] [PMID 9852145]; Zpr1p complement(1588882..1590405) Sugiyamaella lignohabitans 30034436 AWJ20_2517 CDS MGA2 NC_031674.1 1595750 1598167 R ER membrane protein involved in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting; MGA2 has a paralog, SPT23, that arose from the whole genome duplication; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISM] [PMID 11007476]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19061897]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070417 - cellular response to cold [Evidence IMP] [PMID 11855848]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 11063674]; GO_process: GO:0048255 - mRNA stabilization [Evidence IMP] [PMID 15220333]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11557770]; GO_process: GO:0061399 - positive regulation of transcription from RNA polymerase II promoter in response to cobalt ion [Evidence IMP] [PMID 11509659]; GO_process: GO:0061419 - positive regulation of transcription from RNA polymerase II promoter in response to hypoxia [Evidence IMP] [PMID 11509659]; GO_process: GO:0036083 - positive regulation of unsaturated fatty acid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 9927444]; Mga2p complement(1595750..1598167) Sugiyamaella lignohabitans 30034437 AWJ20_2518 CDS MGA2 NC_031674.1 1598350 1600251 R ER membrane protein involved in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting; MGA2 has a paralog, SPT23, that arose from the whole genome duplication; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISM] [PMID 11007476]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19061897]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070417 - cellular response to cold [Evidence IMP] [PMID 11855848]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 11063674]; GO_process: GO:0048255 - mRNA stabilization [Evidence IMP] [PMID 15220333]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11557770]; GO_process: GO:0061399 - positive regulation of transcription from RNA polymerase II promoter in response to cobalt ion [Evidence IMP] [PMID 11509659]; GO_process: GO:0061419 - positive regulation of transcription from RNA polymerase II promoter in response to hypoxia [Evidence IMP] [PMID 11509659]; GO_process: GO:0036083 - positive regulation of unsaturated fatty acid biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 9927444]; Mga2p complement(1598350..1600251) Sugiyamaella lignohabitans 30034438 AWJ20_2520 CDS REV1 NC_031674.1 1602669 1606022 D Deoxycytidyl transferase; involved in repair of abasic sites and adducted guanines in damaged DNA by translesion synthesis (TLS); forms a complex with the subunits of DNA polymerase zeta, Rev3p and Rev7p; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16452144]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 16546083]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005657 - replication fork [Evidence IPI] [PMID 17517887]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 8751446]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0017125 - deoxycytidyl transferase activity [Evidence IDA] [PMID 8751446]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IMP] [PMID 10540291]; GO_process: GO:0070987 - error-free translesion synthesis [Evidence IDA] [PMID 8751446]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IMP] [PMID 17248528]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IDA] [PMID 8751446]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IGI] [PMID 9765213]; Rev1p 1602669..1606022 Sugiyamaella lignohabitans 30034441 AWJ20_2521 CDS CDC19 NC_031674.1 1606623 1607990 R Pyruvate kinase; functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration; regulated via allosteric activation by fructose bisphosphate; CDC19 has a paralog, PYK2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14718557]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0030955 - potassium ion binding [Evidence IEA]; GO_function: GO:0004743 - pyruvate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004743 - pyruvate kinase activity [Evidence IDA] [PMID 12063246]; GO_function: GO:0004743 - pyruvate kinase activity [Evidence IMP] [PMID 323230]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 323230]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IMP] [PMID 323230]; pyruvate kinase CDC19 complement(1606623..1607990) Sugiyamaella lignohabitans 30034442 AWJ20_2522 CDS AWJ20_2522 NC_031674.1 1612718 1613635 R uricase complement(1612718..1613635) Sugiyamaella lignohabitans 30034443 AWJ20_2523 CDS LEU5 NC_031674.1 1615734 1617047 D Mitochondrial carrier protein; involved in the accumulation of CoA in the mitochondrial matrix; homolog of human Graves disease protein; does not encode an isozyme of Leu4p, as first hypothesized; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11158296]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015228 - coenzyme A transmembrane transporter activity [Evidence IMP] [PMID 11158296]; GO_process: GO:0015880 - coenzyme A transport [Evidence IMP] [PMID 11158296]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Leu5p 1615734..1617047 Sugiyamaella lignohabitans 30034444 AWJ20_2524 CDS TCD2 NC_031674.1 1617338 1618687 R tRNA threonylcarbamoyladenosine dehydratase; required for the ct6A tRNA base modification, where an adenosine at position 37 is modified to form a cyclized active ester with an oxazolone ring; localized to the mitochondrial outer membrane; TCD2 has a paralog, TCD1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0061503 - tRNA threonylcarbamoyladenosine dehydratase [Evidence IMP] [PMID 23242255]; GO_process: GO:0061504 - cyclic threonylcarbamoyladenosine biosynthetic process [Evidence IMP] [PMID 23242255]; Tcd2p complement(1617338..1618687) Sugiyamaella lignohabitans 30034445 AWJ20_2525 CDS AWJ20_2525 NC_031674.1 1619905 1621110 R uncharacterized protein complement(1619905..1621110) Sugiyamaella lignohabitans 30034446 AWJ20_2526 CDS PIN3 NC_031674.1 1634704 1635279 R Negative regulator of actin nucleation-promoting factor activity; interacts with Las17p, a homolog of human Wiskott-Aldrich Syndrome protein (WASP), via an N-terminal SH3 domain, and along with LSB1 cooperatively inhibits the nucleation of actin filaments; induces the appearance of the [PIN+] prion when overproduced; PIN3 has a paralog, LSB1, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 23577202]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23577202]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034316 - negative regulation of Arp2/3 complex-mediated actin nucleation [Evidence IDA,IPI] [PMID 23577202]; Pin3p complement(1634704..1635279) Sugiyamaella lignohabitans 30034447 AWJ20_2527 CDS SWD2 NC_031674.1 1636407 1637432 R Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex; required for Set1C stability and optimal activity; COMPASS methylates histone H3 on lys 4 and is involved in telomeric silencing; subunit of CPF (cleavage and polyadenylation factor), a complex involved in RNAP II transcription termination; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11687631]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11742990]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11752412]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA] [PMID 11742990]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA] [PMID 11805083]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11742990]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11752412]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11805083]; GO_process: GO:0034729 - histone H3-K79 methylation [Evidence IMP] [PMID 18083099]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 15146080]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0031126 - snoRNA 3'-end processing [Evidence IMP] [PMID 15146080]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 15146080]; GO_process: GO:0030847 - termination of RNA polymerase II transcription, exosome-dependent [Evidence IPI] [PMID 12819204]; GO_process: GO:0030846 - termination of RNA polymerase II transcription, poly(A)-coupled [Evidence IPI] [PMID 12819204]; Swd2p complement(1636407..1637432) Sugiyamaella lignohabitans 30034448 AWJ20_2528 CDS BUD17 NC_031674.1 1639552 1640559 R Putative pyridoxal kinase; a key enzyme in vitamin B6 metabolism; involved in bud-site selection; diploid mutants display a random rather than a bipolar budding pattern; similarity to yeast BUD16 and human pyridoxal kinase (PDXK); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008478 - pyridoxal kinase activity [Evidence IEA,IEA]; GO_function: GO:0008478 - pyridoxal kinase activity [Evidence ISA] [PMID 9099727]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 11452010]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009443 - pyridoxal 5'-phosphate salvage [Evidence IEA]; GO_process: GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IC] [PMID 9099727]; putative pyridoxal kinase BUD17 complement(1639552..1640559) Sugiyamaella lignohabitans 30034449 AWJ20_2529 CDS YDJ1 NC_031674.1 1641325 1642293 D Type I HSP40 co-chaperone; involved in regulation of HSP90 and HSP70 functions; critical for determining cell size at Start as a function of growth rate; involved in protein translocation across membranes; member of the DnaJ family; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 1869583]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8144572]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 1869583]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 1400408]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 15342786]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 9774392]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 10567418]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 15342786]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9674429]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 1473150]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IMP] [PMID 1729605]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; type I HSP40 co-chaperone YDJ1 1641325..1642293 Sugiyamaella lignohabitans 30034450 AWJ20_2530 CDS AWJ20_2530 NC_031674.1 1643356 1643802 R uncharacterized protein complement(1643356..1643802) Sugiyamaella lignohabitans 30034452 AWJ20_2531 CDS EMP70 NC_031674.1 1646230 1648248 R Protein with a role in cellular adhesion and filamentous growth; also endosome-to-vacuole sorting; similar to Tmn3p; member of Transmembrane Nine family of proteins with 9 transmembrane segments; EMP70 has a paralog, TMN2, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 8314797]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20681974]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI,IMP] [PMID 20681974]; GO_process: GO:0016197 - endosomal transport [Evidence IMP] [PMID 20526336]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 18178563]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 18178563]; GO_process: GO:0007034 - vacuolar transport [Evidence IGI] [PMID 20526336]; Emp70p complement(1646230..1648248) Sugiyamaella lignohabitans 30034453 AWJ20_2532 CDS AWJ20_2532 NC_031674.1 1648945 1649895 R NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein complement(1648945..1649895) Sugiyamaella lignohabitans 30034454 AWJ20_2533 CDS UGO1 NC_031674.1 1650639 1653394 R Outer membrane component of the mitochondrial fusion machinery; binds directly to Fzo1p and Mgm1p and thus links these two GTPases during mitochondrial fusion; involved in fusion of both the outer and inner membranes; facilitates dimerization of Fzo1p during fusion; import into the outer membrane is mediated by Tom70p and Mim1p; has similarity to carrier proteins but is not likely to function as a transmembrane transporter; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 19237599]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IGI,IMP] [PMID 11257114]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IMP,IPI] [PMID 12808034]; Ugo1p complement(join(1650639..1651459,1652209..1653394)) Sugiyamaella lignohabitans 30034455 AWJ20_2534 CDS NCA2 NC_031674.1 1658703 1660709 R Protein that regulates expression of Fo-F1 ATP synthase subunits; involved in the regulation of mitochondrial expression of subunits 6 (Atp6p) and 8 (Atp8p) of the Fo-F1 ATP synthase; functions with Nca3p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 7723016]; GO_process: GO:0016071 - mRNA metabolic process [Evidence IMP] [PMID 7723016]; Nca2p complement(1658703..1660709) Sugiyamaella lignohabitans 30034456 AWJ20_2535 CDS NCE102 NC_031674.1 1663348 1663866 D hypothetical protein; contains transmembrane domains; involved in secretion of proteins that lack classical secretory signal sequences; component of the detergent-insoluble glycolipid-enriched complexes (DIGs); NCE102 has a paralog, FHN1, that arose from the whole genome duplication; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 19064668]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 8655575]; GO_component: GO:0070250 - mating projection membrane [Evidence IDA] [PMID 19064668]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19064668]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070941 - eisosome assembly [Evidence IMP] [PMID 19564405]; GO_process: GO:0090002 - establishment of protein localization to plasma membrane [Evidence IMP] [PMID 20581291]; GO_process: GO:0001933 - negative regulation of protein phosphorylation [Evidence IMP] [PMID 19564405]; GO_process: GO:0007009 - plasma membrane organization [Evidence IMP] [PMID 19564405]; GO_process: GO:0009306 - protein secretion [Evidence IGI,IMP] [PMID 8655575]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nce102p 1663348..1663866 Sugiyamaella lignohabitans 30034457 AWJ20_2536 CDS AWJ20_2536 NC_031674.1 1666900 1672092 R uncharacterized protein complement(join(1666900..1668694,1670203..1670234,1671013..1672092)) Sugiyamaella lignohabitans 30034458 AWJ20_2539 CDS APM3 NC_031674.1 1677053 1678393 R Mu3-like subunit of the clathrin associated protein complex (AP-3); functions in transport of alkaline phosphatase to the vacuole via the alternate pathway; GO_component: GO:0030123 - AP-3 adaptor complex [Evidence IDA] [PMID 9250663]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 9335339]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 17895371]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Apm3p complement(1677053..1678393) Sugiyamaella lignohabitans 30034461 AWJ20_2540 CDS RPA190 NC_031674.1 1678948 1683672 R RNA polymerase I largest subunit A190; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15520468]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 3054507]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IGI] [PMID 2023944]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IMP] [PMID 3054507]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase I core subunit RPA190 complement(1678948..1683672) Sugiyamaella lignohabitans 30034463 AWJ20_2541 CDS PMT1 NC_031674.1 1684744 1687542 D dolichyl-phosphate-mannose-protein mannosyltransferase PMT1 1684744..1687542 Sugiyamaella lignohabitans 30034464 AWJ20_2542 CDS VPS9 NC_031674.1 1687662 1690196 R guanine nucleotide exchange factor VPS9 complement(1687662..1690196) Sugiyamaella lignohabitans 30034465 AWJ20_2543 CDS AWJ20_2543 NC_031674.1 1693961 1695076 D uncharacterized protein 1693961..1695076 Sugiyamaella lignohabitans 30034466 AWJ20_2544 CDS AWJ20_2544 NC_031674.1 1695311 1697794 R uncharacterized protein complement(1695311..1697794) Sugiyamaella lignohabitans 30034467 AWJ20_2545 CDS FLR1 NC_031674.1 1699336 1700847 R Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs; expression induced in cells treated with the mycotoxin patulin; relocalizes from nucleus to plasma membrane upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10903515]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015244 - fluconazole transporter activity [Evidence ISS] [PMID 9235926]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI,IMP] [PMID 10572257]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI] [PMID 9235926]; GO_process: GO:0015893 - drug transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9235926]; GO_process: GO:0006810 - transport [Evidence IEA]; Flr1p complement(1699336..1700847) Sugiyamaella lignohabitans 30034468 AWJ20_2546 CDS PDC2 NC_031674.1 1704080 1706479 D Transcription factor for thiamine-regulated genes; required for expression of the two isoforms of pyruvate decarboxylase (PDC1 and PDC5) along with thiamine biosynthetic genes; binds a DNA sequence in the PDC5 promoter; mutant fails to grow on 2% glucose and thus is scored as inviable under standard conditions; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 22404710]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 22404710]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:2001172 - positive regulation of glucose catabolic process to ethanol [Evidence IMP] [PMID 8264540]; GO_process: GO:0090180 - positive regulation of thiamine biosynthetic process [Evidence IGI,IMP] [PMID 16850348]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19013460]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8264540]; Pdc2p 1704080..1706479 Sugiyamaella lignohabitans 30034469 AWJ20_2547 CDS NUP57 NC_031674.1 1710523 1711719 D FG-nucleoporin NUP57 1710523..1711719 Sugiyamaella lignohabitans 30034470 AWJ20_2548 CDS PRE10 NC_031674.1 1713568 1713879 D Alpha 7 subunit of the 20S proteasome; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 9087403]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 7 1713568..1713879 Sugiyamaella lignohabitans 30034471 AWJ20_2549 CDS HIS4 NC_031674.1 1715065 1717728 R Multifunctional enzyme containing phosphoribosyl-ATP pyrophosphatase; phosphoribosyl-AMP cyclohydrolase, and histidinol dehydrogenase activities; catalyzes the second, third, ninth and tenth steps in histidine biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004399 - histidinol dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004399 - histidinol dehydrogenase activity [Evidence IDA] [PMID 379004]; GO_function: GO:0004399 - histidinol dehydrogenase activity [Evidence IMP] [PMID 5919326]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IDA] [PMID 379004]; GO_function: GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IMP] [PMID 5919326]; GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IDA] [PMID 379004]; GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IMP] [PMID 5919326]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IMP] [PMID 14190241]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IMP] [PMID 5919326]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; trifunctional histidinol dehydrogenase/phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase complement(1715065..1717728) Sugiyamaella lignohabitans 30034472 AWJ20_2550 CDS AWJ20_2550 NC_031674.1 1715834 1716067 D uncharacterized protein 1715834..1716067 Sugiyamaella lignohabitans 30034474 AWJ20_2551 CDS AWJ20_2551 NC_031674.1 1718748 1721588 R uncharacterized protein complement(1718748..1721588) Sugiyamaella lignohabitans 30034475 AWJ20_2552 CDS GLO1 NC_031674.1 1724671 1725708 R Monomeric glyoxalase I; catalyzes the detoxification of methylglyoxal (a by-product of glycolysis) via condensation with glutathione to produce S-D-lactoylglutathione; expression regulated by methylglyoxal levels and osmotic stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004462 - lactoylglutathione lyase activity [Evidence IEA,IEA]; GO_function: GO:0004462 - lactoylglutathione lyase activity [Evidence IGI] [PMID 8824231]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_process: GO:0006749 - glutathione metabolic process [Evidence IGI] [PMID 8824231]; GO_process: GO:0019243 - methylglyoxal catabolic process to D-lactate [Evidence IDA] [PMID 8824231]; lactoylglutathione lyase GLO1 complement(1724671..1725708) Sugiyamaella lignohabitans 30034476 AWJ20_2553 CDS MCA1 NC_031674.1 1732247 1733503 R Ca2+-dependent cysteine protease; may cleave specific substrates during the stress response; regulates apoptosis upon H2O2 treatment; required for clearance of insoluble protein aggregates during normal growth; implicated in cell cycle dynamics and lifespan extension; undergoes autocatalytic processing; similar to mammalian metacaspases, but exists as a monomer due to an extra pair of anti-parallel beta-strands that block potential dimerization; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 24855027]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12062425]; GO_function: GO:0004198 - calcium-dependent cysteine-type endopeptidase activity [Evidence IDA,IMP] [PMID 22761449]; GO_function: GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IDA] [PMID 11983181]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 16170310]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 16301538]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 20624963]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Ca(2+)-dependent cysteine protease MCA1 complement(1732247..1733503) Sugiyamaella lignohabitans 30034477 AWJ20_2554 CDS TIF4631 NC_031674.1 1734417 1737725 D Translation initiation factor eIF4G; subunit of the mRNA cap-binding protein complex (eIF4F) that also contains eIF4E (Cdc33p); interacts with Pab1p and with eIF4A (Tif1p); also has a role in biogenesis of the large ribosomal subunit; TIF4631 has a paralog, TIF4632, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21925384]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23222640]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0016281 - eukaryotic translation initiation factor 4F complex [Evidence IGI,IMP,ISS] [PMID 8336723]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12810920]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence TAS] [PMID 9841679]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0034063 - stress granule assembly [Evidence IMP] [PMID 18981231]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IMP] [PMID 12810920]; Tif4631p 1734417..1737725 Sugiyamaella lignohabitans 30034478 AWJ20_2555 CDS RPT6 NC_031674.1 1740781 1743707 D ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; bound by ubiquitin-protein ligases Ubr1p and Ufd4p; localized mainly to the nucleus throughout the cell cycle; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10419517]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 9287326]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0019904 - protein domain specific binding [Evidence IDA] [PMID 7870180]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 20855529]; GO_process: GO:0043433 - negative regulation of sequence-specific DNA binding transcription factor activity [Evidence IMP] [PMID 17167105]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IGI] [PMID 11410533]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IGI] [PMID 16269334]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 19843524]; GO_process: GO:0051091 - positive regulation of sequence-specific DNA binding transcription factor activity [Evidence IMP] [PMID 16269334]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 11389845]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 10688918]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; proteasome regulatory particle base subunit RPT6 join(1740781..1741927,1743211..1743707) Sugiyamaella lignohabitans 30034479 AWJ20_2556 CDS YNG2 NC_031674.1 1742936 1743892 R histone acetyltransferase YNG2 complement(1742936..1743892) Sugiyamaella lignohabitans 30034480 AWJ20_2557 CDS AWJ20_2557 NC_031674.1 1744521 1746839 R uncharacterized protein complement(1744521..1746839) Sugiyamaella lignohabitans 30034481 AWJ20_2558 CDS PEP7 NC_031674.1 1747971 1750505 D Adaptor protein involved in vesicle-mediated vacuolar protein sorting; multivalent adaptor protein; facilitates vesicle-mediated vacuolar protein sorting by ensuring high-fidelity vesicle docking and fusion, which are essential for targeting of vesicles to the endosome; required for vacuole inheritance; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9168472]; GO_component: GO:0010009 - cytoplasmic side of endosome membrane [Evidence IDA] [PMID 9168472]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 9702203]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IMP] [PMID 9168472]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI] [PMID 9335586]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IGI,IPI] [PMID 10021387]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 1493335]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IMP] [PMID 9168472]; GO_process: GO:0006906 - vesicle fusion [Evidence IMP] [PMID 9168472]; Pep7p 1747971..1750505 Sugiyamaella lignohabitans 30034482 AWJ20_2559 CDS HEM15 NC_031674.1 1751991 1753004 R Ferrochelatase; a mitochondrial inner membrane protein, catalyzes the insertion of ferrous iron into protoporphyrin IX, the eighth and final step in the heme biosynthetic pathway; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 7629135]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004325 - ferrochelatase activity [Evidence IEA,IEA]; GO_function: GO:0004325 - ferrochelatase activity [Evidence IDA] [PMID 1304908]; GO_function: GO:0004325 - ferrochelatase activity [Evidence IMP] [PMID 2185242]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 7035824]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]; ferrochelatase HEM15 complement(1751991..1753004) Sugiyamaella lignohabitans 30034483 AWJ20_2560 CDS ALE1 NC_031674.1 1754427 1755818 D Broad-specificity lysophospholipid acyltransferase; part of MBOAT family of membrane-bound O-acyltransferases; key component of Lands cycle; may have role in fatty acid exchange at sn-2 position of mature glycerophospholipids; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17890783]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity [Evidence IEA]; GO_function: GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity [Evidence IGI,IMP] [PMID 17675291]; GO_function: GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity [Evidence IMP] [PMID 17726007]; GO_function: GO:0047184 - 1-acylglycerophosphocholine O-acyltransferase activity [Evidence IEA]; GO_function: GO:0047184 - 1-acylglycerophosphocholine O-acyltransferase activity [Evidence IMP] [PMID 17726007]; GO_function: GO:0047184 - 1-acylglycerophosphocholine O-acyltransferase activity [Evidence IMP] [PMID 17951629]; GO_function: GO:0008374 - O-acyltransferase activity [Evidence IDA,IMP] [PMID 17890783]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0046474 - glycerophospholipid biosynthetic process [Evidence IGI,IMP] [PMID 17675291]; GO_process: GO:0046474 - glycerophospholipid biosynthetic process [Evidence IMP] [PMID 17726007]; GO_process: GO:0046474 - glycerophospholipid biosynthetic process [Evidence IMP] [PMID 17890783]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; Ale1p 1754427..1755818 Sugiyamaella lignohabitans 30034485 AWJ20_2561 CDS AKR1 NC_031674.1 1756019 1758292 R Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats; AKR1 has a paralog, AKR2, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 16647879]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031901 - early endosome membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 15632165]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 12370247]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016409 - palmitoyltransferase activity [Evidence IDA] [PMID 12370247]; GO_function: GO:0019706 - protein-cysteine S-palmitoyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0018345 - protein palmitoylation [Evidence IDA] [PMID 12370247]; GO_process: GO:0018345 - protein palmitoylation [Evidence IDA,IMP] [PMID 16227572]; GO_process: GO:0018345 - protein palmitoylation [Evidence IMP] [PMID 16751107]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 16227572]; GO_process: GO:0030100 - regulation of endocytosis [Evidence IMP] [PMID 10866691]; GO_process: GO:0010969 - regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IGI] [PMID 8524293]; Akr1p complement(1756019..1758292) Sugiyamaella lignohabitans 30034486 AWJ20_2562 CDS AWJ20_2562 NC_031674.1 1759401 1761209 R Putative transcription factor sre2 complement(1759401..1761209) Sugiyamaella lignohabitans 30034487 AWJ20_2563 CDS AWJ20_2563 NC_031674.1 1765986 1766345 D uncharacterized protein 1765986..1766345 Sugiyamaella lignohabitans 30034488 AWJ20_2564 CDS AWJ20_2564 NC_031674.1 1770237 1770728 D Putative pyridoxal 5'-phosphate synthase; transcriptionally activated by Yrm1p along with genes involved in multidrug resistance; YPR172W has a paralog, YLR456W, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]; pyridoxal 5'-phosphate synthase 1770237..1770728 Sugiyamaella lignohabitans 30034489 AWJ20_2565 CDS PSF2 NC_031674.1 1771040 1771543 R Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IPI] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12768207]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16103218]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IGI] [PMID 12730134]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12768207]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; Psf2p complement(1771040..1771543) Sugiyamaella lignohabitans 30034490 AWJ20_2566 CDS ARG2 NC_031674.1 1772970 1774337 D Acetylglutamate synthase (glutamate N-acetyltransferase); mitochondrial enzyme that catalyzes the first step in the biosynthesis of the arginine precursor ornithine; forms a complex with Arg5,6p; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 205532]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_function: GO:0004042 - acetyl-CoA:L-glutamate N-acetyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004042 - acetyl-CoA:L-glutamate N-acetyltransferase activity [Evidence IDA,IMP] [PMID 11553611]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence TAS] [PMID 11553611]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006592 - ornithine biosynthetic process [Evidence IMP] [PMID 11553611]; acetyl-CoA:L-glutamate N-acetyltransferase 1772970..1774337 Sugiyamaella lignohabitans 30034491 AWJ20_2567 CDS VPS4 NC_031674.1 1774859 1776016 R AAA-ATPase involved in multivesicular body (MVB) protein sorting; ATP-bound Vps4p localizes to endosomes and catalyzes ESCRT-III disassembly and membrane release; ATPase activity is activated by Vta1p; regulates cellular sterol metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 9606181]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 16601096]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA,IMP] [PMID 9606181]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 16505166]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 9155008]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 9606181]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA] [PMID 18266866]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IMP] [PMID 19234443]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 9211789]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP,IPI] [PMID 9606181]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP] [PMID 16505166]; GO_process: GO:0051260 - protein homooligomerization [Evidence IDA] [PMID 9606181]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0016125 - sterol metabolic process [Evidence IGI,IMP] [PMID 16096648]; GO_process: GO:0006810 - transport [Evidence IEA]; AAA family ATPase VPS4 complement(1774859..1776016) Sugiyamaella lignohabitans 30034492 AWJ20_2568 CDS AWJ20_2568 NC_031674.1 1775481 1775816 D uncharacterized protein 1775481..1775816 Sugiyamaella lignohabitans 30034493 AWJ20_2569 CDS AWJ20_2569 NC_031674.1 1776995 1777567 R uncharacterized protein complement(1776995..1777567) Sugiyamaella lignohabitans 30034494 AWJ20_2570 CDS AWJ20_2570 NC_031674.1 1780143 1781909 R Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein complement(1780143..1781909) Sugiyamaella lignohabitans 30034496 AWJ20_2572 CDS EXO70 NC_031674.1 1784134 1785975 D Subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis prior to SNARE-mediated fusion; PtdIns[4,5]P2-binding protein that localizes to exocytic sites in an actin-independent manner, targeting and anchoring the exocyst with Sec3p; involved in exocyst assembly; direct downstream effector of Rho3p and Cdc42p; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 18946089]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 10207081]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17717527]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 18946089]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000145 - exocyst [Evidence IEA]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 18195105]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17717527]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0017049 - GTP-Rho binding [Evidence IPI] [PMID 10207081]; GO_function: GO:0017049 - GTP-Rho binding [Evidence IDA] [PMID 10588647]; GO_function: GO:0017049 - GTP-Rho binding [Evidence IPI] [PMID 19955214]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IDA] [PMID 17717527]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IMP] [PMID 17339375]; GO_process: GO:0007266 - Rho protein signal transduction [Evidence IDA,IGI,IPI] [PMID 19955214]; GO_process: GO:0001927 - exocyst assembly [Evidence IMP] [PMID 15583030]; GO_process: GO:0001927 - exocyst assembly [Evidence IMP] [PMID 18946089]; GO_process: GO:0051601 - exocyst localization [Evidence IGI] [PMID 17717527]; GO_process: GO:0051601 - exocyst localization [Evidence IGI] [PMID 18946089]; GO_process: GO:0006887 - exocytosis [Evidence IEA,IEA]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 15583030]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 17339375]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17717527]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Exo70p 1784134..1785975 Sugiyamaella lignohabitans 30034498 AWJ20_2574 CDS MNN11 NC_031674.1 1789722 1791206 D Subunit of a Golgi mannosyltransferase complex; this complex also contains Anp1p, Mnn9p, Mnn10p, and Hoc1p, and mediates elongation of the polysaccharide mannan backbone; has homology to Mnn10p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10635561]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006486 - protein glycosylation [Evidence IDA,IMP] [PMID 10635561]; Mnn11p 1789722..1791206 Sugiyamaella lignohabitans 30034500 AWJ20_2575 CDS SSN3 NC_031674.1 1794555 1796477 R cyclin-dependent serine/threonine protein kinase SSN3 complement(1794555..1796477) Sugiyamaella lignohabitans 30034501 AWJ20_2576 CDS AWJ20_2576 NC_031674.1 1798566 1800029 D uncharacterized protein 1798566..1800029 Sugiyamaella lignohabitans 30034502 AWJ20_2577 CDS UGA4 NC_031674.1 1800278 1801870 R GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p complement(1800278..1801870) Sugiyamaella lignohabitans 30034503 AWJ20_2578 CDS AWJ20_2578 NC_031674.1 1804923 1806038 D uncharacterized protein 1804923..1806038 Sugiyamaella lignohabitans 30034504 AWJ20_2579 CDS BUD32 NC_031674.1 1807163 1807957 R serine/threonine protein kinase BUD32 complement(1807163..1807957) Sugiyamaella lignohabitans 30034505 AWJ20_2580 CDS CTS1 NC_031674.1 1810618 1812111 D Endochitinase; required for cell separation after mitosis; transcriptional activation during the G1 phase of the cell cycle is mediated by transcription factor Ace2p; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11747810]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 19129178]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 1918080]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11747810]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 1918080]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11914276]; GO_function: GO:0008061 - chitin binding [Evidence IEA]; GO_function: GO:0004568 - chitinase activity [Evidence IEA,IEA]; GO_function: GO:0008843 - endochitinase activity [Evidence IDA] [PMID 6799506]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IC] [PMID 3033651]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 1918080]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; Cts1p 1810618..1812111 Sugiyamaella lignohabitans 30034507 AWJ20_2581 CDS NNT1 NC_031674.1 1812193 1812972 R S-adenosylmethionine-dependent methyltransferase; has a role in rDNA silencing and in lifespan determination; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA] [PMID 21858014]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0008112 - nicotinamide N-methyltransferase activity [Evidence IEA]; GO_function: GO:0008112 - nicotinamide N-methyltransferase activity [Evidence ISS] [PMID 12736687]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 12736687]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006769 - nicotinamide metabolic process [Evidence ISS] [PMID 12736687]; GO_process: GO:0006769 - nicotinamide metabolic process [Evidence IGI] [PMID 14724176]; Nnt1p complement(1812193..1812972) Sugiyamaella lignohabitans 30034508 AWJ20_2582 CDS COQ2 NC_031674.1 1813566 1814735 D Para hydroxybenzoate polyprenyl transferase; catalyzes the second step in ubiquinone (coenzyme Q) biosynthesis; human COQ2, mutations in which are implicated in an increased risk of mutiple-system atrophy, is able to complement a yeast coq2 null mutant; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0032592 - integral component of mitochondrial membrane [Evidence IDA] [PMID 359053]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10469659]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 1740455]; GO_function: GO:0002083 - 4-hydroxybenzoate decaprenyltransferase activity [Evidence IEA]; GO_function: GO:0047293 - 4-hydroxybenzoate nonaprenyltransferase activity [Evidence IEA]; GO_function: GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity [Evidence IMP] [PMID 1740455]; GO_function: GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity [Evidence IGI] [PMID 7765507]; GO_function: GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity [Evidence ISS] [PMID 8155731]; GO_function: GO:0004659 - prenyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IGI] [PMID 15548532]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 1740455]; 4-hydroxybenzoate octaprenyltransferase 1813566..1814735 Sugiyamaella lignohabitans 30034509 AWJ20_2583 CDS JIP5 NC_031674.1 1815009 1815692 R Protein required for biogenesis of the large ribosomal subunit; required for biogenesis of the large ribosomal subunit; interacts with proteins involved in RNA processing, ribosome biogenesis, ubiquitination and demethylation; similar to WDR55, a human WD repeat protein; essential gene; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 19806183]; Jip5p complement(1815009..1815692) Sugiyamaella lignohabitans 30034510 AWJ20_2584 CDS AWJ20_2584 NC_031674.1 1816731 1817330 R uncharacterized protein complement(1816731..1817330) Sugiyamaella lignohabitans 30034511 AWJ20_2585 CDS TPO1 NC_031674.1 1818139 1819827 R Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p complement(1818139..1819827) Sugiyamaella lignohabitans 30034512 AWJ20_2586 CDS TAF4 NC_031674.1 1820409 1821365 R TFIID subunit (48 kDa); involved in RNA polymerase II transcription initiation; potential Cdc28p substrate; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA,IPI] [PMID 12501245]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf4p complement(1820409..1821365) Sugiyamaella lignohabitans 30034513 AWJ20_2587 CDS RCL1 NC_031674.1 1822861 1823445 D Endonuclease that cleaves pre-rRNA at site A2 for 18S rRNA biogenesis; subunit of U3-containing 90S preribosome processome complex involved in small ribosomal subunit assembly; stimulates Bms1p GTPase and U3 binding activity; similar to RNA cyclase-like proteins but no cyclase activity detected; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10790377]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003963 - RNA-3'-phosphate cyclase activity [Evidence ISS] [PMID 10790377]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 21849504]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 16307926]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10790377]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10790377]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10790377]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Rcl1p 1822861..1823445 Sugiyamaella lignohabitans 30034514 AWJ20_2588 CDS MVP1 NC_031674.1 1823929 1825791 R Protein required for sorting proteins to the vacuole; Mvp1p and Vps1p act in concert to promote membrane traffic to the vacuole; participates in transcription initiation and/or early elongation of specific genes; interacts with 'foot domain' of RNA polymerase II; deletion results in abnormal CTD-Ser5 phosphorylation of RNA polymerase II at specific promoter regions; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 7862158]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21954159]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 7862158]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mvp1p complement(1823929..1825791) Sugiyamaella lignohabitans 30034515 AWJ20_2589 CDS RPN7 NC_031674.1 1829369 1830607 R Essential non-ATPase regulatory subunit of the 26S proteasome; similar to another S. cerevisiae regulatory subunit, Rpn5p, as well as to mammalian proteasome subunits; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19446323]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 15102831]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 8982460]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 9697412]; proteasome regulatory particle lid subunit RPN7 complement(1829369..1830607) Sugiyamaella lignohabitans 30034516 AWJ20_2590 CDS HXK2 NC_031674.1 1833762 1835171 D Hexokinase isoenzyme 2; catalyzes phosphorylation of glucose in the cytosol; predominant hexokinase during growth on glucose; functions in the nucleus to repress expression of HXK1 and GLK1 and to induce expression of its own gene; antiapoptotic; phosphorylation/dephosphorylation at serine-14 by protein kinase Snf1p and protein phosphatase Glc7p-Reg1p regulates nucleocytoplasmic shuttling of Hxk2p; HXK2 has a paralog, HXK1, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11311123]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9563516]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11311123]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9563516]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004396 - hexokinase activity [Evidence IEA,IEA]; GO_function: GO:0004396 - hexokinase activity [Evidence IDA] [PMID 12611889]; GO_function: GO:0004396 - hexokinase activity [Evidence IDA] [PMID 332086]; GO_function: GO:0004396 - hexokinase activity [Evidence IMP] [PMID 6341351]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA,IEA]; GO_process: GO:0032445 - fructose import [Evidence IGI] [PMID 6300872]; GO_process: GO:0006000 - fructose metabolic process [Evidence IMP] [PMID 6300872]; GO_process: GO:0046323 - glucose import [Evidence IGI] [PMID 6300872]; GO_process: GO:0006006 - glucose metabolic process [Evidence IMP] [PMID 6300872]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IDA] [PMID 332086]; GO_process: GO:0006096 - glycolytic process [Evidence IDA,IMP] [PMID 8917466]; GO_process: GO:0019318 - hexose metabolic process [Evidence IEA]; GO_process: GO:0006013 - mannose metabolic process [Evidence IDA] [PMID 332086]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0046015 - regulation of transcription by glucose [Evidence IDA] [PMID 11311123]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 15722108]; hexokinase 2 1833762..1835171 Sugiyamaella lignohabitans 30034518 AWJ20_2591 CDS RTG2 NC_031674.1 1835934 1837820 R Sensor of mitochondrial dysfunction; regulates the subcellular location of Rtg1p and Rtg3p, transcriptional activators of the retrograde (RTG) and TOR pathways; Rtg2p is inhibited by the phosphorylated form of Mks1p; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10848632]; GO_component: GO:0035327 - transcriptionally active chromatin [Evidence IDA] [PMID 12446794]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IDA,IGI,IMP] [PMID 7493987]; GO_process: GO:0035753 - maintenance of DNA trinucleotide repeats [Evidence IMP] [PMID 12399373]; GO_process: GO:0031930 - mitochondria-nucleus signaling pathway [Evidence IMP] [PMID 7493987]; GO_process: GO:0031930 - mitochondria-nucleus signaling pathway [Evidence IMP] [PMID 8422683]; GO_process: GO:1900008 - negative regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging [Evidence IMP] [PMID 15020466]; GO_process: GO:0001079 - nitrogen catabolite regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11687605]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA,IGI,IMP] [PMID 7493987]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8422683]; GO_process: GO:0042991 - transcription factor import into nucleus [Evidence IMP] [PMID 10848632]; GO_process: GO:0042991 - transcription factor import into nucleus [Evidence IMP] [PMID 11076970]; Rtg2p complement(1835934..1837820) Sugiyamaella lignohabitans 30034519 AWJ20_2592 CDS GAP1 NC_031674.1 1842980 1844725 D General amino acid permease; Gap1p senses the presence of amino acid substrates to regulate localization to the plasma membrane when needed; essential for invasive growth; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 12499351]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15039776]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 15039776]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 9199164]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005771 - multivesicular body [Evidence IMP] [PMID 14523026]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15623581]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15707981]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 6759873]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 15707981]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 6759873]; GO_process: GO:0015846 - polyamine transport [Evidence IMP] [PMID 15707981]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; amino acid permease GAP1 1842980..1844725 Sugiyamaella lignohabitans 30034520 AWJ20_2593 CDS SNF3 NC_031674.1 1845843 1846916 R Plasma membrane low glucose sensor, regulates glucose transport; contains 12 predicted transmembrane segments and a long C-terminal tail required for induction of hexose transporters; also senses fructose and mannose; SNF3 has a paralog, RGT2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2406560]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0005536 - glucose binding [Evidence TAS] [PMID 10477308]; GO_function: GO:0005355 - glucose transmembrane transporter activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0004872 - receptor activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0051594 - detection of glucose [Evidence IGI,IMP] [PMID 8901598]; GO_process: GO:0015755 - fructose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IGI] [PMID 9564039]; GO_process: GO:0015761 - mannose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 18616605]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 10477308]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Snf3p complement(1845843..1846916) Sugiyamaella lignohabitans 30034521 AWJ20_2594 CDS LEU4 NC_031674.1 1850835 1852565 R Alpha-isopropylmalate synthase (2-isopropylmalate synthase); the main isozyme responsible for the first step in the leucine biosynthesis pathway; LEU4 has a paralog, LEU9, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 3275644]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 3275644]; GO_function: GO:0003852 - 2-isopropylmalate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003852 - 2-isopropylmalate synthase activity [Evidence IDA] [PMID 3275644]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0046912 - transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IGI] [PMID 10790691]; 2-isopropylmalate synthase LEU4 complement(1850835..1852565) Sugiyamaella lignohabitans 30034522 AWJ20_2595 CDS YAF9 NC_031674.1 1853843 1854148 R Subunit of NuA4 histone H4 acetyltransferase and SWR1 complexes; may function to antagonize silencing near telomeres; interacts directly with Swc4p; has homology to human leukemogenic protein AF9; contains a YEATS domain; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI,IPI] [PMID 14690608]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 15485911]; GO_process: GO:0043486 - histone exchange [Evidence IMP] [PMID 16299513]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Yaf9p complement(1853843..1854148) Sugiyamaella lignohabitans 30034523 AWJ20_2596 CDS RER1 NC_031674.1 1855719 1856294 D Protein involved in retention of membrane proteins; including Sec12p, in the ER; localized to Golgi; functions as a retrieval receptor in returning membrane proteins to the ER; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA,IMP] [PMID 11238450]; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 22761830]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; GO_process: GO:0006621 - protein retention in ER lumen [Evidence IMP] [PMID 8707815]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IDA,IMP] [PMID 11238450]; Rer1p 1855719..1856294 Sugiyamaella lignohabitans 30034524 AWJ20_2597 CDS ARL1 NC_031674.1 1860879 1861172 D Soluble GTPase with a role in regulation of membrane traffic; regulates potassium influx; role in membrane organization at trans-Golgi network; G protein of the Ras superfamily, similar to ADP-ribosylation factor; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15077113]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15564045]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15975906]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 15975906]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 23345439]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA,ISS] [PMID 9388248]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 16926193]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12210899]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI,IMP] [PMID 11840166]; Arf family GTPase ARL1 1860879..1861172 Sugiyamaella lignohabitans 30034525 AWJ20_2598 CDS CTA1 NC_031674.1 1867915 1869411 D Catalase A; breaks down hydrogen peroxide in the peroxisomal matrix formed by acyl-CoA oxidase (Pox1p) during fatty acid beta-oxidation; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 14998369]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 1986244]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0004096 - catalase activity [Evidence IEA,IEA]; GO_function: GO:0004096 - catalase activity [Evidence IGI,IMP] [PMID 3897793]; GO_function: GO:0004096 - catalase activity [Evidence IDA] [PMID 9931255]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_process: GO:0001315 - age-dependent response to reactive oxygen species [Evidence IGI,IMP] [PMID 10705040]; GO_process: GO:0042744 - hydrogen peroxide catabolic process [Evidence IEA]; GO_process: GO:0042744 - hydrogen peroxide catabolic process [Evidence IGI,IMP] [PMID 3897793]; GO_process: GO:0042744 - hydrogen peroxide catabolic process [Evidence IDA] [PMID 9931255]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006979 - response to oxidative stress [Evidence IEA]; GO_process: GO:0000302 - response to reactive oxygen species [Evidence IMP] [PMID 15893481]; catalase A 1867915..1869411 Sugiyamaella lignohabitans 30034526 AWJ20_2599 CDS AWJ20_2599 NC_031674.1 1874015 1874824 D XP_964639|NADPH dehydrogenase [Neurospora crassa OR74A]; NADPH dehydrogenase 1874015..1874824 Sugiyamaella lignohabitans 30034527 AWJ20_2600 CDS RPS1A NC_031674.1 1875995 1876768 D Ribosomal protein 10 (rp10) of the small (40S) subunit; homologous to mammalian ribosomal protein S3A, no bacterial homolog; RPS1A has a paralog, RPS1B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 16246728]; GO_process: GO:0006412 - translation [Evidence IEA,IEA]; ribosomal 40S subunit protein S1A 1875995..1876768 Sugiyamaella lignohabitans 30034530 AWJ20_2601 CDS MVD1 NC_031674.1 1878022 1879206 D Mevalonate pyrophosphate decarboxylase; essential enzyme involved in the biosynthesis of isoprenoids and sterols, including ergosterol; acts as a homodimer; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004163 - diphosphomevalonate decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004163 - diphosphomevalonate decarboxylase activity [Evidence IDA,IMP] [PMID 15169949]; GO_function: GO:0004163 - diphosphomevalonate decarboxylase activity [Evidence IMP] [PMID 1779710]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IMP] [PMID 9244250]; diphosphomevalonate decarboxylase MVD1 1878022..1879206 Sugiyamaella lignohabitans 30034531 AWJ20_2602 CDS PMA1 NC_031674.1 1882605 1885559 R Plasma membrane H+-ATPase; pumps protons out of the cell; major regulator of cytoplasmic pH and plasma membrane potential; P2-type ATPase; Hsp30p plays a role in Pma1p regulation; interactions with Std1p appear to propagate [GAR+]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 10716729]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 15536122]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11739806]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IEA]; GO_function: GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IDA] [PMID 17912695]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:1902906 - proteasome storage granule assembly [Evidence IMP] [PMID 23690178]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IDA] [PMID 8396147]; GO_process: GO:0006885 - regulation of pH [Evidence IEP] [PMID 8929277]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 8396147]; GO_process: GO:0006810 - transport [Evidence IEA]; H(+)-exporting P2-type ATPase PMA1 complement(1882605..1885559) Sugiyamaella lignohabitans 30034532 AWJ20_2603 CDS REE1 NC_031674.1 1895554 1896153 R Cytoplasmic protein involved in the regulation of enolase (ENO1); mRNA expression is induced by calcium shortage, copper deficiency (via Mac1p) and the presence of galactose (via Gal4p); mRNA expression is also regulated by the cell cycle; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Ree1p complement(1895554..1896153) Sugiyamaella lignohabitans 30034533 AWJ20_2604 CDS LEO1 NC_031674.1 1897136 1898434 D Component of the Paf1 complex; which associates with RNA polymerase II and is involved in histone methylation; plays a role in regulating Ty1 transposition; involved in transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11884586]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11927560]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643076]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 20732871]; GO_function: GO:1990269 - RNA polymerase II C-terminal domain phosphoserine binding [Evidence IDA] [PMID 22796944]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 11927560]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 23109428]; GO_process: GO:0006325 - chromatin organization [Evidence IMP] [PMID 20732871]; GO_process: GO:0080182 - histone H3-K4 trimethylation [Evidence IMP] [PMID 20732871]; GO_process: GO:2001209 - positive regulation of transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 20299458]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 14710186]; GO_process: GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination [Evidence IDA] [PMID 19531475]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0090262 - regulation of transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 21737840]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 11927560]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Leo1p 1897136..1898434 Sugiyamaella lignohabitans 30034534 AWJ20_2605 CDS EFG1 NC_031674.1 1898670 1899212 R Essential protein required for maturation of 18S rRNA; null mutant is sensitive to hydroxyurea and is delayed in recovering from alpha-factor arrest; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0000321 - re-entry into mitotic cell cycle after pheromone arrest [Evidence IMP] [PMID 16510898]; Efg1p complement(1898670..1899212) Sugiyamaella lignohabitans 30034535 AWJ20_2606 CDS TDH3 NC_031674.1 1906201 1907214 R Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 3; involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell wall; GAPDH-derived antimicrobial peptides secreted by S. cerevisiae are active against a wide variety of wine-related yeasts and bateria; TDH3 has a paralog, TDH2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11158358]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11158358]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IPI] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [Evidence IEA]; GO_function: GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [Evidence IDA] [PMID 3905788]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17726063]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEP] [PMID 3905788]; GO_process: GO:0006006 - glucose metabolic process [Evidence IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEP] [PMID 3905788]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0072593 - reactive oxygen species metabolic process [Evidence IMP] [PMID 17726063]; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) TDH3 complement(1906201..1907214) Sugiyamaella lignohabitans 30034536 AWJ20_2607 CDS IAH1 NC_031674.1 1914851 1917625 D Isoamyl acetate-hydrolyzing esterase; required in balance with alcohol acetyltransferase to maintain optimal amounts of isoamyl acetate, which is particularly important in sake brewing; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IDA] [PMID 10855721]; GO_process: GO:0006083 - acetate metabolic process [Evidence IDA] [PMID 10855721]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; Iah1p join(1914851..1915534,1917257..1917305,1917600..1917625) Sugiyamaella lignohabitans 30034537 AWJ20_2608 CDS AWJ20_2608 NC_031674.1 1915867 1916343 R uncharacterized protein complement(1915867..1916343) Sugiyamaella lignohabitans 30034538 AWJ20_2609 CDS AWJ20_2609 NC_031674.1 1917652 1919679 D Putative glycosidase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YIR007W is a non-essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; hydrolase 1917652..1919679 Sugiyamaella lignohabitans 30034539 AWJ20_2610 CDS TAF7 NC_031674.1 1920579 1922225 R TFIID subunit (67 kDa); involved in RNA polymerase II transcription initiation; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf7p complement(1920579..1922225) Sugiyamaella lignohabitans 30034541 AWJ20_2611 CDS MTF1 NC_031674.1 1922881 1923771 D Mitochondrial RNA polymerase specificity factor; has structural similarity to S-adenosylmethionine-dependent methyltransferases and functional similarity to bacterial sigma-factors; Mtf1p interacts with and stabilizes the Rpo41p-promoter complex, enhancing DNA bending and melting to facilitate pre-initiation open complex formation; GO_component: GO:0034245 - mitochondrial DNA-directed RNA polymerase complex [Evidence IDA] [PMID 7929382]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 12270918]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 12270918]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0034246 - mitochondrial RNA polymerase binding promoter specificity activity [Evidence IDA] [PMID 20008320]; GO_function: GO:0034246 - mitochondrial RNA polymerase binding promoter specificity activity [Evidence IDA,IPI] [PMID 7929382]; GO_function: GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]; GO_function: GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IEA]; GO_process: GO:0000154 - rRNA modification [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006391 - transcription initiation from mitochondrial promoter [Evidence IDA] [PMID 19920143]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Mtf1p 1922881..1923771 Sugiyamaella lignohabitans 30034542 AWJ20_2612 CDS CHA4 NC_031674.1 1924897 1927785 D DNA binding transcriptional activator; mediates serine/threonine activation of the catabolic L-serine (L-threonine) deaminase (CHA1); Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 8889513]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA,IPI,ISS] [PMID 8889513]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009063 - cellular amino acid catabolic process [Evidence IGI,IMP] [PMID 8889513]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IMP] [PMID 8889513]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Cha4p 1924897..1927785 Sugiyamaella lignohabitans 30034543 AWJ20_2613 CDS SEC12 NC_031674.1 1928175 1930184 D Sar family guanine nucleotide exchange factor SEC12 join(1928175..1928402,1928514..1930184) Sugiyamaella lignohabitans 30034544 AWJ20_2614 CDS MRN1 NC_031674.1 1937161 1939482 D RNA-binding protein that may be involved in translational regulation; binds specific categories of mRNAs, including those that contain upstream open reading frames (uORFs) and internal ribosome entry sites (IRES); interacts genetically with chromatin remodelers and splicing factors, linking chromatin state, splicing and as a result mRNA maturation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23028530]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23222640]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23028530]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI] [PMID 23028530]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI] [PMID 23028530]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; Mrn1p 1937161..1939482 Sugiyamaella lignohabitans 30034545 AWJ20_2615 CDS AWJ20_2615 NC_031674.1 1941550 1942323 R uncharacterized protein complement(1941550..1942323) Sugiyamaella lignohabitans 30034546 AWJ20_2616 CDS AWJ20_2616 NC_031674.1 1943342 1945117 D uncharacterized protein 1943342..1945117 Sugiyamaella lignohabitans 30034547 AWJ20_2617 CDS AWJ20_2617 NC_031674.1 1946979 1948760 R uncharacterized protein complement(1946979..1948760) Sugiyamaella lignohabitans 30034548 AWJ20_2618 CDS SIN4 NC_031674.1 1949984 1952191 D Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; contributes to both postive and negative transcriptional regulation; dispensible for basal transcription; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA] [PMID 20308326]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12482986]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16452140]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12558798]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sin4p 1949984..1952191 Sugiyamaella lignohabitans 30034549 AWJ20_2619 CDS AWJ20_2619 NC_031674.1 1952232 1953812 R uncharacterized protein complement(1952232..1953812) Sugiyamaella lignohabitans 30034550 AWJ20_2620 CDS CSL4 NC_031674.1 1954033 1954860 R Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain an S1 RNA binding domain; has similarity to human hCsl4p (EXOSC1); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11027292]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA,IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11027292]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10465791]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15935758]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IGI,IMP] [PMID 11027292]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IGI,IMP] [PMID 19060898]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 11910110]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Csl4p complement(1954033..1954860) Sugiyamaella lignohabitans 30034552 AWJ20_2621 CDS TPO1 NC_031674.1 1955156 1956742 R Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p complement(1955156..1956742) Sugiyamaella lignohabitans 30034553 AWJ20_2622 CDS BNI4 NC_031674.1 1958919 1961714 R Targeting subunit for Glc7p protein phosphatase; localized to the bud neck, required for localization of chitin synthase III to the bud neck via interaction with the chitin synthase III regulatory subunit Skt5p; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15282802]; GO_component: GO:0032174 - cellular bud neck septin collar [Evidence IDA] [PMID 15901837]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15901837]; GO_component: GO:0005940 - septin ring [Evidence IDA] [PMID 15901837]; GO_component: GO:0005940 - septin ring [Evidence IDA,IPI] [PMID 9314530]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12529424]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 9314530]; GO_process: GO:0008105 - asymmetric protein localization [Evidence IDA,IMP] [PMID 12529424]; GO_process: GO:0000917 - barrier septum assembly [Evidence IGI] [PMID 15470103]; GO_process: GO:0006031 - chitin biosynthetic process [Evidence IGI,IMP] [PMID 15470103]; Bni4p complement(1958919..1961714) Sugiyamaella lignohabitans 30034554 AWJ20_2623 CDS AWJ20_2623 NC_031674.1 1970231 1971010 D uncharacterized protein 1970231..1971010 Sugiyamaella lignohabitans 30034555 AWJ20_2624 CDS CCM1 NC_031674.1 1971430 1973766 D Mitochondrial 15S rRNA-binding protein; required for intron removal of COB and COX1 pre-mRNAs; has separable roles in stabilizing mitochondrial 15S rRNA and in maturation of the COB and COX1 mRNAs; contains pentatricopeptide repeat (PPR) motifs; mutant is respiratory deficient and has defective plasma membrane electron transport; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 20124025]; GO_function: GO:0019843 - rRNA binding [Evidence IDA] [PMID 20124025]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IMP] [PMID 19562342]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000963 - mitochondrial RNA processing [Evidence IMP] [PMID 19562342]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 19751518]; GO_process: GO:0016072 - rRNA metabolic process [Evidence IMP] [PMID 20124025]; Ccm1p 1971430..1973766 Sugiyamaella lignohabitans 30034556 AWJ20_2625 CDS AWJ20_2625 NC_031674.1 1974632 1976728 R uncharacterized protein complement(1974632..1976728) Sugiyamaella lignohabitans 30034557 AWJ20_2626 CDS PET100 NC_031674.1 1985640 1985879 R Chaperone that facilitates the assembly of cytochrome c oxidase; integral to the mitochondrial inner membrane; interacts with a subcomplex of subunits VII, VIIa, and VIII (Cox7p, Cox9p, and Cox8p) but not with the holoenzyme; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 15507444]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11498004]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 11498004]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8702496]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IMP] [PMID 11498004]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IMP] [PMID 15507444]; Pet100p complement(1985640..1985879) Sugiyamaella lignohabitans 30034558 AWJ20_2627 CDS ACS2 NC_031674.1 1986410 1987942 R Acetyl-coA synthetase isoform; along with Acs1p, acetyl-coA synthetase isoform is the nuclear source of acetyl-coA for histone acetylation; mutants affect global transcription; required for growth on glucose; expressed under anaerobic conditions; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16857587]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9711835]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 19618123]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16857587]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19618123]; GO_function: GO:0016208 - AMP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003987 - acetate-CoA ligase activity [Evidence IEA,IEA]; GO_function: GO:0003987 - acetate-CoA ligase activity [Evidence IDA] [PMID 8910545]; GO_function: GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IDA] [PMID 18305111]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006085 - acetyl-CoA biosynthetic process [Evidence IDA] [PMID 8910545]; GO_process: GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 16857587]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 19618123]; acetate--CoA ligase ACS2 complement(1986410..1987942) Sugiyamaella lignohabitans 30034559 AWJ20_2628 CDS SEF1 NC_031674.1 1989988 1993503 R Putative transcription factor; has homolog in Kluyveromyces lactis; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Sef1p complement(1989988..1993503) Sugiyamaella lignohabitans 30034560 AWJ20_2629 CDS RPN8 NC_031674.1 2000405 2001448 D Essential non-ATPase regulatory subunit of the 26S proteasome; has similarity to the human p40 proteasomal subunit and to another S. cerevisiae regulatory subunit, Rpn11p; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 8982460]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 9697412]; proteasome regulatory particle lid subunit RPN8 2000405..2001448 Sugiyamaella lignohabitans 30034561 AWJ20_2631 CDS NOP6 NC_031674.1 2002193 2002993 D rRNA-binding protein required for 40S ribosomal subunit biogenesis; contains an RNA recognition motif (RRM); hydrophilin essential to overcome the stress of the desiccation-rehydration process; NOP6 may be a fungal-specific gene as no homologs have been yet identified in higher eukaryotes; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 21282979]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17425675]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IDA] [PMID 21282979]; GO_function: GO:0030515 - snoRNA binding [Evidence IDA] [PMID 21893585]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IGI] [PMID 17425675]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop6p 2002193..2002993 Sugiyamaella lignohabitans 30034564 AWJ20_2632 CDS CDC42 NC_031674.1 2003247 2003825 R Small rho-like GTPase; essential for establishment and maintenance of cell polarity; plays a role late in cell fusion via activation of key cell fusion regulator Fus2p; mutants have defects in the organization of actin and septins; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12455994]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12455994]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8167411]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12455994]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 12455994]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 8167411]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 8167411]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IDA] [PMID 12455994]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12455994]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8167411]; GO_component: GO:0005940 - septin ring [Evidence IDA] [PMID 23906065]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11591390]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IMP] [PMID 10066831]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence IMP] [PMID 10066831]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 22323294]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 23468594]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 10066831]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IGI,IMP] [PMID 11003652]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IMP] [PMID 11595741]; GO_process: GO:0045921 - positive regulation of exocytosis [Evidence IGI,IPI] [PMID 19955214]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 10066831]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence IMP] [PMID 12234925]; GO_process: GO:0060178 - regulation of exocyst localization [Evidence IMP] [PMID 11595741]; GO_process: GO:0031384 - regulation of initiation of mating projection growth [Evidence IMP] [PMID 14734532]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 11598008]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0031106 - septin ring organization [Evidence IMP] [PMID 14517318]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Rho family GTPase CDC42 complement(2003247..2003825) Sugiyamaella lignohabitans 30034565 AWJ20_2633 CDS GPN2 NC_031674.1 2005414 2006484 D Putative GTPase with a role in biogenesis of RNA pol II and polIII; may be involved in assembly of RNA polymerases II and III and in their transport into the nucleus; contains a Gly-Pro-Asn motif in the G domain; similar to Npa3p and Gpn3p; highly conserved across species and homologous to human gene GPN2/ATPBD1B; required for establishment of sister chromatid cohesion; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISA] [PMID 23267056]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0044376 - RNA polymerase II complex localization to nucleus [Evidence IMP] [PMID 23267056]; GO_process: GO:1990022 - RNA polymerase III complex localization to nucleus [Evidence IMP] [PMID 23267056]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IMP] [PMID 18439903]; Gpn2p 2005414..2006484 Sugiyamaella lignohabitans 30034566 AWJ20_2634 CDS AWJ20_2634 NC_031674.1 2007651 2010308 D uncharacterized protein 2007651..2010308 Sugiyamaella lignohabitans 30034567 AWJ20_2635 CDS AHP1 NC_031674.1 2012482 2013000 R Thiol-specific peroxiredoxin; reduces hydroperoxides to protect against oxidative damage; function in vivo requires covalent conjugation to Urm1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10681558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP,ISS] [PMID 10681558]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 10681558]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0010038 - response to metal ion [Evidence IMP] [PMID 12270680]; Ahp1p complement(2012482..2013000) Sugiyamaella lignohabitans 30034568 AWJ20_2636 CDS AWJ20_2636 NC_031674.1 2012675 2012896 D uncharacterized protein 2012675..2012896 Sugiyamaella lignohabitans 30034569 AWJ20_2637 CDS AWJ20_2637 NC_031674.1 2014800 2015207 D uncharacterized protein 2014800..2015207 Sugiyamaella lignohabitans 30034570 AWJ20_2638 CDS LAA1 NC_031674.1 2016012 2021243 D AP-1 accessory protein; colocalizes with clathrin to the late-Golgi apparatus; involved in TGN-endosome transport; physically interacts with AP-1; similar to the mammalian p200; may interact with ribosomes; YJL207C is a non-essential gene; GO_component: GO:0030121 - AP-1 adaptor complex [Evidence IPI] [PMID 16687571]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 16687571]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IGI,IMP] [PMID 16687571]; GO_process: GO:0006810 - transport [Evidence IEA]; Laa1p 2016012..2021243 Sugiyamaella lignohabitans 30034571 AWJ20_2639 CDS NUC1 NC_031674.1 2021871 2022812 D Major mitochondrial nuclease; has RNAse and DNA endo- and exonucleolytic activities; roles in mitochondrial recombination, apoptosis and maintenance of polyploidy; involved in fragmentation of genomic DNA during PND (programmed nuclear destruction); encodes ortholog of mammalian endoG; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 17244531]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 3286639]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17244531]; GO_function: GO:0004520 - endodeoxyribonuclease activity [Evidence IDA] [PMID 3286639]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004529 - exodeoxyribonuclease activity [Evidence IDA] [PMID 3286639]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0004540 - ribonuclease activity [Evidence IDA] [PMID 3286639]; GO_process: GO:0006308 - DNA catabolic process [Evidence IDA] [PMID 3286639]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 8087883]; GO_process: GO:0006401 - RNA catabolic process [Evidence IDA] [PMID 3286639]; GO_process: GO:0006309 - apoptotic DNA fragmentation [Evidence IMP] [PMID 22727375]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17244531]; Nuc1p 2021871..2022812 Sugiyamaella lignohabitans 30034572 AWJ20_2640 CDS AWJ20_2640 NC_031674.1 2030584 2032523 R uncharacterized protein complement(join(2030584..2031256,2031704..2032313,2032505..2032523)) Sugiyamaella lignohabitans 30034574 AWJ20_2641 CDS AWJ20_2641 NC_031674.1 2032699 2034986 R uncharacterized protein complement(join(2032699..2033240,2033643..2034029,2034432..2034776,2034968..2034986)) Sugiyamaella lignohabitans 30034575 AWJ20_2642 CDS AWJ20_2642 NC_031674.1 2036119 2037875 R uncharacterized protein complement(join(2036119..2036666,2037671..2037875)) Sugiyamaella lignohabitans 30034576 AWJ20_2643 CDS AWJ20_2643 NC_031674.1 2037592 2042493 D cell surface glycoprotein (predicted) 2037592..2042493 Sugiyamaella lignohabitans 30034577 AWJ20_2644 CDS AWJ20_2644 NC_031674.1 2038026 2040554 R uncharacterized protein complement(2038026..2040554) Sugiyamaella lignohabitans 30034578 AWJ20_2645 CDS FMO1 NC_031674.1 2042568 2043650 R Flavin-containing monooxygenase; localized to the cytoplasmic face of the ER membrane; catalyzes oxidation of biological thiols to maintain the ER redox buffer ratio for correct folding of disulfide-bonded proteins; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10077572]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IEA]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IDA] [PMID 10600176]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 10077572]; Fmo1p complement(2042568..2043650) Sugiyamaella lignohabitans 30034579 AWJ20_2646 CDS AWJ20_2646 NC_031674.1 2045443 2046510 R putative agrin-like complement(2045443..2046510) Sugiyamaella lignohabitans 30034580 AWJ20_2647 CDS AWJ20_2647 NC_031674.1 2049885 2050544 R uncharacterized protein complement(2049885..2050544) Sugiyamaella lignohabitans 30034581 AWJ20_2648 CDS AWJ20_2648 NC_031674.1 2050907 2051509 R uncharacterized protein complement(2050907..2051509) Sugiyamaella lignohabitans 30034582 AWJ20_2649 CDS RAD5 NC_031674.1 2052887 2056456 R DNA helicase/Ubiquitin ligase; involved in error-free branch of DNA damage tolerance (DDT) pathway; proposed to promote replication fork regression during postreplication repair by template switching; stimulates synthesis of free and PCNA-bound polyubiquitin chains by Ubc13p-Mms2p; required for error-prone translesion synthesis; forms nuclear foci upon DNA replication stress; associates with native telomeres, cooperates with homologous recombination in senescent cells; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IDA] [PMID 24393774]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10880451]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 17936713]; GO_function: GO:0000403 - Y-form DNA binding [Evidence IDA] [PMID 17936713]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 17936713]; GO_function: GO:0009378 - four-way junction helicase activity [Evidence IDA] [PMID 17936713]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI,IMP] [PMID 16224103]; GO_process: GO:0042276 - error-prone translesion synthesis [Evidence IMP] [PMID 23142547]; GO_process: GO:0010994 - free ubiquitin chain polymerization [Evidence IDA] [PMID 19706603]; GO_process: GO:0006301 - postreplication repair [Evidence IDA] [PMID 17936713]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA] [PMID 19706603]; DNA helicase RAD5 complement(2052887..2056456) Sugiyamaella lignohabitans 30034583 AWJ20_2650 CDS HKR1 NC_031674.1 2062074 2078750 D Mucin family member that functions as an osmosensor in the HOG pathway; functions in the Sho1p-mediated HOG pathway with Msb2p; proposed to be a negative regulator of filamentous growth; mutant displays defects in beta-1,3 glucan synthesis and bud site selection; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,ISS] [PMID 8550469]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 17627274]; GO_function: GO:0005034 - osmosensor activity [Evidence IGI] [PMID 17627274]; GO_process: GO:0006075 - (1->3)-beta-D-glucan biosynthetic process [Evidence IMP] [PMID 8550469]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 8550469]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 8550469]; GO_process: GO:0006972 - hyperosmotic response [Evidence IGI] [PMID 17627274]; GO_process: GO:0007232 - osmosensory signaling pathway via Sho1 osmosensor [Evidence IGI,IPI] [PMID 17627274]; Hkr1p join(2062074..2068395,2068462..2078750) Sugiyamaella lignohabitans 30034585 AWJ20_2651 CDS AWJ20_2651 NC_031674.1 2064521 2065806 R uncharacterized protein complement(join(2064521..2065533,2065764..2065806)) Sugiyamaella lignohabitans 30034586 AWJ20_2652 CDS AWJ20_2652 NC_031674.1 2066051 2067382 R Disintegrin and metalloproteinase domain-containing protein 30 complement(join(2066051..2067297,2067352..2067382)) Sugiyamaella lignohabitans 30034587 AWJ20_2653 CDS AWJ20_2653 NC_031674.1 2068859 2070313 R Disintegrin and metalloproteinase domain-containing protein 30 complement(2068859..2070313) Sugiyamaella lignohabitans 30034588 AWJ20_2654 CDS pan1 NC_031674.1 2070806 2072462 R actin cortical patch component, with EF hand and WH2 motif Panl (predicted) complement(join(2070806..2072079,2072444..2072462)) Sugiyamaella lignohabitans 30034589 AWJ20_2655 CDS pan1 NC_031674.1 2074703 2078694 R actin cortical patch component, with EF hand and WH2 motif Panl (predicted) complement(join(2074703..2078043,2078170..2078584,2078662..2078694)) Sugiyamaella lignohabitans 30034590 AWJ20_2656 CDS GTB1 NC_031674.1 2079975 2081653 D Glucosidase II beta subunit, forms a complex with alpha subunit Rot2p; involved in removal of two glucose residues from N-linked glycans during glycoprotein biogenesis in the ER; relocalizes from ER to cytoplasm upon DNA replication stress; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 22842922]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 16373354]; GO_component: GO:0017177 - glucosidase II complex [Evidence IPI] [PMID 16373354]; GO_function: GO:0004558 - alpha-glucosidase activity [Evidence IMP] [PMID 16373354]; GO_function: GO:0004558 - alpha-glucosidase activity [Evidence IMP] [PMID 19542522]; GO_process: GO:0006491 - N-glycan processing [Evidence IEA]; GO_process: GO:0000271 - polysaccharide biosynthetic process [Evidence IMP] [PMID 16373354]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 16373354]; Gtb1p join(2079975..2080062,2080128..2081653) Sugiyamaella lignohabitans 30034591 AWJ20_2657 CDS AWJ20_2657 NC_031674.1 2082043 2083230 D uncharacterized protein 2082043..2083230 Sugiyamaella lignohabitans 30034592 AWJ20_2658 CDS PRP2 NC_031674.1 2083310 2086603 R RNA-dependent DExD/H-box ATPase; required for activation of spliceosome before first transesterification step in RNA splicing; implicated in rearranging and proofreading snRNA structure in catalytic activation of spliceosome; ortholog of human protein DHX16; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA,IMP] [PMID 2251118]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA,IMP] [PMID 8112302]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA,IMP] [PMID 8430102]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 1534753]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IDA] [PMID 8943336]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0034247 - snoRNA splicing [Evidence IMP] [PMID 24442613]; DEAH-box RNA-dependent ATPase PRP2 complement(2083310..2086603) Sugiyamaella lignohabitans 30034593 AWJ20_2659 CDS RPN5 NC_031674.1 2087228 2088352 D Subunit of the CSN and 26S proteasome lid complexes; similar to mammalian p55 subunit and to another S. cerevisiae regulatory subunit, Rpn7p; Rpn5p is an essential protein; the COP9 signalosome is also known as the CSN; GO_component: GO:0008180 - COP9 signalosome [Evidence IDA] [PMID 21289098]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IDA] [PMID 21289098]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0010388 - cullin deneddylation [Evidence IMP] [PMID 21289098]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 8982460]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence TAS] [PMID 9697412]; proteasome regulatory particle lid subunit RPN5 2087228..2088352 Sugiyamaella lignohabitans 30034594 AWJ20_2660 CDS OYE3 NC_031674.1 2089548 2090657 R Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN); homologous to Oye2p with different ligand binding and catalytic properties; has potential roles in oxidative stress response and programmed cell death; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IDA,ISS] [PMID 7836424]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0018548 - pentaerythritol trinitrate reductase activity [Evidence IEA]; GO_function: GO:0052690 - trichloro-p-hydroquinone reductive dehalogenase activity [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17897954]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Oye3p complement(2089548..2090657) Sugiyamaella lignohabitans 30034596 AWJ20_2661 CDS AWJ20_2661 NC_031674.1 2091310 2092068 D uncharacterized protein 2091310..2092068 Sugiyamaella lignohabitans 30034597 AWJ20_2662 CDS UTP4 NC_031674.1 2092517 2094700 D Subunit of U3-containing 90S preribosome and SSU processome complexes; involved in production of 18S rRNA and assembly of small ribosomal subunit; member of t-Utp subcomplex involved with transcription of 35S rRNA transcript; Small Subunit processome is also known as SSU processome; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Utp4p 2092517..2094700 Sugiyamaella lignohabitans 30034598 AWJ20_2663 CDS RPC82 NC_031674.1 2095101 2096969 R RNA polymerase III subunit C82; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 1406632]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rpc82p complement(2095101..2096969) Sugiyamaella lignohabitans 30034599 AWJ20_2664 CDS ATG13 NC_031674.1 2099213 2101870 D serine/threonine protein kinase regulatory subunit ATG13 2099213..2101870 Sugiyamaella lignohabitans 30034600 AWJ20_2665 CDS TPO3 NC_031674.1 2103001 2103705 R Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; specific for spermine; localizes to the plasma membrane; TPO3 has a paralog, TPO2, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo3p complement(2103001..2103705) Sugiyamaella lignohabitans 30034601 AWJ20_2666 CDS LSB5 NC_031674.1 2106907 2108007 D hypothetical protein; binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome protein involved in actin patch assembly and actin polymerization; may mediate disassembly of the Pan1 complex from the endocytic coat; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 15651983]; GO_component: GO:0005938 - cell cortex [Evidence IEA]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 12388763]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 15651983]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 18298676]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18298676]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI] [PMID 12388763]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 12388763]; GO_process: GO:0007015 - actin filament organization [Evidence IPI] [PMID 10512884]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 12388763]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; Lsb5p 2106907..2108007 Sugiyamaella lignohabitans 30034602 AWJ20_2667 CDS RPB2 NC_031674.1 2109200 2112631 R RNA polymerase II second largest subunit B150; part of central core; similar to bacterial beta subunit; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001055 - RNA polymerase II activity [Evidence IDA] [PMID 8288647]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0032549 - ribonucleoside binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 2406558]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase II core subunit RPB2 complement(2109200..2112631) Sugiyamaella lignohabitans 30034603 AWJ20_2668 CDS CSE1 NC_031674.1 2116068 2118698 D Nuclear envelope protein that mediates the nuclear export of Srp1p; Srp1p (importin alpha) is a homolog of metazoan CAS protein; required for accurate chromosome segregation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 9857050]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008262 - importin-alpha export receptor activity [Evidence IGI,IPI,ISS] [PMID 9857050]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IGI,IPI] [PMID 9857050]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cse1p 2116068..2118698 Sugiyamaella lignohabitans 30034604 AWJ20_2669 CDS CMS1 NC_031674.1 2119086 2119436 R Putative subunit of the 90S preribosome processome complex; overexpression rescues supressor mutant of mcm10; null mutant is viable; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Cms1p complement(2119086..2119436) Sugiyamaella lignohabitans 30034605 AWJ20_2670 CDS UTP18 NC_031674.1 2119955 2121712 R Small-subunit processome protein involved in pre-18S rRNA maturation; part of a subunit of the 90S preribosomal particle capable of interacting directly with the 5' ETS of the 35S pre-rRNA; contains WD40 repeats; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp18p complement(2119955..2121712) Sugiyamaella lignohabitans 30034607 AWJ20_2671 CDS ICE2 NC_031674.1 2127015 2128733 R Integral ER membrane protein with type-III transmembrane domains; required for maintenance of ER zinc homeostasis; necessary for efficient targeting of Trm1p tRNA methyltransferase to inner nuclear membrane; mutations cause defects in cortical ER morphology in both the mother and daughter cells; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 15585575]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 15585575]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0097038 - perinuclear endoplasmic reticulum [Evidence IDA] [PMID 15585575]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006882 - cellular zinc ion homeostasis [Evidence IMP] [PMID 22685415]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IMP] [PMID 15585575]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IGI,IMP] [PMID 17984322]; GO_process: GO:0036228 - protein targeting to nuclear inner membrane [Evidence IMP] [PMID 15911569]; GO_process: GO:0000921 - septin ring assembly [Evidence IGI,IMP] [PMID 17984322]; Ice2p complement(2127015..2128733) Sugiyamaella lignohabitans 30034608 AWJ20_2672 CDS UTP25 NC_031674.1 2129542 2131719 D Nucleolar protein; required for 35S pre-RNA processing and 40S ribosomal subunit biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 20528918]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 20528918]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IPI] [PMID 20528918]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 20884785]; GO_function: GO:0034511 - U3 snoRNA binding [Evidence IDA] [PMID 20528918]; GO_function: GO:0019843 - rRNA binding [Evidence IDA] [PMID 20528918]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 20528918]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 20884785]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP,IPI] [PMID 19806183]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 20528918]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 20884785]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp25p 2129542..2131719 Sugiyamaella lignohabitans 30034609 AWJ20_2673 CDS LAP2 NC_031674.1 2132025 2133929 D Leucyl aminopeptidase yscIV with epoxide hydrolase activity; metalloenzyme containing one zinc atom; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; also known as leukotriene A4 hydrolase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IDA] [PMID 10574934]; GO_function: GO:0004301 - epoxide hydrolase activity [Evidence IDA] [PMID 10574934]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004463 - leukotriene-A4 hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004463 - leukotriene-A4 hydrolase activity [Evidence ISS] [PMID 10341423]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IMP] [PMID 10341423]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IDA] [PMID 10574934]; GO_process: GO:0019370 - leukotriene biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0030163 - protein catabolic process [Evidence IDA] [PMID 10574934]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Lap2p 2132025..2133929 Sugiyamaella lignohabitans 30034610 AWJ20_2674 CDS AWJ20_2674 NC_031674.1 2134282 2135694 R ubiquitin protease cofactor (predicted) complement(2134282..2135694) Sugiyamaella lignohabitans 30034611 AWJ20_2675 CDS ADE4 NC_031674.1 2138438 2140249 D Phosphoribosylpyrophosphate amidotransferase (PRPPAT); catalyzes first step of the 'de novo' purine nucleotide biosynthetic pathway; also known as amidophosphoribosyltransferase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004044 - amidophosphoribosyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004044 - amidophosphoribosyltransferase activity [Evidence IDA,IMP] [PMID 11689683]; GO_function: GO:0004044 - amidophosphoribosyltransferase activity [Evidence IMP] [PMID 6376509]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IMP] [PMID 11689683]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009116 - nucleoside metabolic process [Evidence IEA]; GO_process: GO:0009113 - purine nucleobase biosynthetic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; amidophosphoribosyltransferase 2138438..2140249 Sugiyamaella lignohabitans 30034612 AWJ20_2676 CDS MIH1 NC_031674.1 2147167 2149374 D putative tyrosine protein phosphatase MIH1 2147167..2149374 Sugiyamaella lignohabitans 30034613 AWJ20_2677 CDS AWJ20_2677 NC_031674.1 2149829 2150656 R uncharacterized protein complement(2149829..2150656) Sugiyamaella lignohabitans 30034614 AWJ20_2678 CDS UTP13 NC_031674.1 2151074 2153467 R Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp13p complement(2151074..2153467) Sugiyamaella lignohabitans 30034615 AWJ20_2679 CDS ERG2 NC_031674.1 2155979 2156458 D C-8 sterol isomerase; catalyzes the isomerization of the delta-8 double bond to the delta-7 position at an intermediate step in ergosterol biosynthesis; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IC] [PMID 18459942]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000247 - C-8 sterol isomerase activity [Evidence IMP] [PMID 18459942]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 18459942]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; C-8 sterol isomerase ERG2 2155979..2156458 Sugiyamaella lignohabitans 30034616 AWJ20_2680 CDS SPT7 NC_031674.1 2157231 2161178 D Subunit of the SAGA transcriptional regulatory complex; involved in proper assembly of the complex; also present as a C-terminally truncated form in the SLIK/SALSA transcriptional regulatory complex; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9224714]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 12101232]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 9858534]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 7713415]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 12101232]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 9858534]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; SAGA histone acetyltransferase complex subunit SPT7 join(2157231..2158128,2158324..2161178) Sugiyamaella lignohabitans 30034618 AWJ20_2681 CDS AWJ20_2681 NC_031674.1 2160461 2161123 R uncharacterized protein complement(2160461..2161123) Sugiyamaella lignohabitans 30034619 AWJ20_2682 CDS YOS9 NC_031674.1 2161464 2163350 R ER quality-control lectin; integral subunit of the HRD ligase; participates in efficient ER retention of misfolded proteins by recognizing them and delivering them to Hrd1p; binds to glycans with terminal alpha-1,6 linked mannose on misfolded N-glycosylated proteins and participates in targeting proteins to ERAD; member of the OS-9 protein family; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IPI] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 16168371]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0034099 - luminal surveillance complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0070492 - oligosaccharide binding [Evidence IDA] [PMID 19111666]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16168370]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16168371]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16168372]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 22298424]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 22298424]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 24292014]; Yos9p complement(2161464..2163350) Sugiyamaella lignohabitans 30034620 AWJ20_2683 CDS MRPL35 NC_031674.1 2163951 2165135 D Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; mitochondrial 54S ribosomal protein YmL35 2163951..2165135 Sugiyamaella lignohabitans 30034621 AWJ20_2684 CDS AWJ20_2684 NC_031674.1 2167056 2167634 D uncharacterized protein 2167056..2167634 Sugiyamaella lignohabitans 30034622 AWJ20_2685 CDS AWJ20_2685 NC_031674.1 2169500 2170405 D uncharacterized protein 2169500..2170405 Sugiyamaella lignohabitans 30034623 AWJ20_2686 CDS SEC18 NC_031674.1 2170625 2172964 R AAA ATPase and SNARE disassembly chaperone; required for vesicular transport between ER and Golgi, the 'priming' step in homotypic vacuole fusion, autophagy, and protein secretion; releases Sec17p from SNAP complexes; has similarity to mammalian N-ethylmaleimide-sensitive factor (NSF); GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 23613772]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 10387016]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 2071670]; GO_process: GO:0048211 - Golgi vesicle docking [Evidence IDA] [PMID 9382859]; GO_process: GO:0035494 - SNARE complex disassembly [Evidence IDA] [PMID 18650938]; GO_process: GO:0035494 - SNARE complex disassembly [Evidence IDA] [PMID 9425154]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 11694599]; GO_process: GO:0048219 - inter-Golgi cisterna vesicle-mediated transport [Evidence IMP] [PMID 10637300]; GO_process: GO:0048219 - inter-Golgi cisterna vesicle-mediated transport [Evidence IMP] [PMID 2071670]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA] [PMID 8670830]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA] [PMID 9685264]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IDA] [PMID 9382859]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; AAA family ATPase SEC18 complement(2170625..2172964) Sugiyamaella lignohabitans 30034624 AWJ20_2687 CDS AWJ20_2687 NC_031674.1 2176038 2179262 R uncharacterized protein complement(2176038..2179262) Sugiyamaella lignohabitans 30034625 AWJ20_2688 CDS AWJ20_2688 NC_031674.1 2181535 2181960 D Fungal Genetics Stock Center 13762; NADH:ubiquinone oxidoreductase 18.4kD subunit 2181535..2181960 Sugiyamaella lignohabitans 30034626 AWJ20_2689 CDS AWJ20_2689 NC_031674.1 2182686 2183363 D uncharacterized protein 2182686..2183363 Sugiyamaella lignohabitans 30034627 AWJ20_2690 CDS AWJ20_2690 NC_031674.1 2190059 2194309 R uncharacterized protein complement(2190059..2194309) Sugiyamaella lignohabitans 30034629 AWJ20_2691 CDS AWJ20_2691 NC_031674.1 2195827 2196789 D uncharacterized protein 2195827..2196789 Sugiyamaella lignohabitans 30034630 AWJ20_2692 CDS COX4 NC_031674.1 2197933 2198433 D Subunit IV of cytochrome c oxidase; the terminal member of the mitochondrial inner membrane electron transport chain; precursor N-terminal 25 residues are cleaved during mitochondrial import; phosphorylated; spermidine enhances translation; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005751 - mitochondrial respiratory chain complex IV [Evidence IPI] [PMID 1331058]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IEA,IEA]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IDA] [PMID 1331058]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IDA] [PMID 7851399]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 17215247]; GO_process: GO:0009060 - aerobic respiration [Evidence IPI] [PMID 163235]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0006123 - mitochondrial electron transport, cytochrome c to oxygen [Evidence IDA] [PMID 1331058]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006119 - oxidative phosphorylation [Evidence IEA]; cytochrome c oxidase subunit IV 2197933..2198433 Sugiyamaella lignohabitans 30034631 AWJ20_2693 CDS RPS26B NC_031674.1 2199899 2200261 D Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S26, no bacterial homolog; RPS26B has a paralog, RPS26A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IGI] [PMID 16246728]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S26B 2199899..2200261 Sugiyamaella lignohabitans 30034632 AWJ20_2694 CDS RSC2 NC_031674.1 2204301 2206655 R Component of the RSC chromatin remodeling complex; required for expression of mid-late sporulation-specific genes; involved in telomere maintenance; RSC2 has a paralog, RSC1, that arose from the whole genome duplication; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 12183366]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI] [PMID 14729968]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 16024655]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IPI] [PMID 15870268]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006276 - plasmid maintenance [Evidence IMP] [PMID 12024034]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IMP] [PMID 14729968]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rsc2p complement(2204301..2206655) Sugiyamaella lignohabitans 30034633 AWJ20_2695 CDS SCW4 NC_031674.1 2207222 2208403 R Cell wall protein with similarity to glucanases; scw4 scw10 double mutants exhibit defects in mating; SCW4 has a paralog, SCW10, that arose from the whole genome duplication; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 19129178]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 9748433]; GO_component: GO:0005773 - vacuole [Evidence IDA] [PMID 23222640]; GO_function: GO:0015926 - glucosidase activity [Evidence ISS] [PMID 9748433]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IGI] [PMID 9748433]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Scw4p complement(2207222..2208403) Sugiyamaella lignohabitans 30034634 AWJ20_2696 CDS LYS9 NC_031674.1 2216417 2217448 D Saccharopine dehydrogenase (NADP+, L-glutamate-forming); catalyzes the formation of saccharopine from alpha-aminoadipate 6-semialdehyde, the seventh step in lysine biosynthesis pathway; exhibits genetic and physical interactions with TRM112; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004755 - saccharopine dehydrogenase (NADP+, L-glutamate-forming) activity [Evidence IEA]; GO_function: GO:0004755 - saccharopine dehydrogenase (NADP+, L-glutamate-forming) activity [Evidence IDA] [PMID 18416559]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IMP] [PMID 6429126]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; saccharopine dehydrogenase (NADP+, L-glutamate-forming) 2216417..2217448 Sugiyamaella lignohabitans 30034635 AWJ20_2697 CDS AWJ20_2697 NC_031674.1 2217747 2218358 R Pre-mRNA-splicing factor 38A complement(2217747..2218358) Sugiyamaella lignohabitans 30034636 AWJ20_2698 CDS AWJ20_2698 NC_031674.1 2225861 2226976 D uncharacterized protein 2225861..2226976 Sugiyamaella lignohabitans 30034637 AWJ20_2699 CDS UTR2 NC_031674.1 2229484 2230920 D Chitin transglycosylase; functions in the transfer of chitin to beta(1-6) and beta(1-3) glucans in the cell wall; similar to and functionally redundant with Crh1; glycosylphosphatidylinositol (GPI)-anchored protein localized to bud neck; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA,IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 12045225]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IGI,IMP] [PMID 18694928]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IDA] [PMID 23919454]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006037 - cell wall chitin metabolic process [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0071555 - cell wall organization [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 18694928]; Utr2p 2229484..2230920 Sugiyamaella lignohabitans 30034638 AWJ20_2700 CDS KIN4 NC_031674.1 2235521 2238304 D putative serine/threonine protein kinase KIN4 2235521..2238304 Sugiyamaella lignohabitans 30034641 AWJ20_2701 CDS PFF1 NC_031674.1 2239053 2242052 D Multi-spanning vacuolar membrane protease; glycosylated transmembrane protein bearing homology to the M28 family of metalloproteases; has a lumenal-facing protease domain; proposed role in vacuole physiology; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23679341]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Pff1p 2239053..2242052 Sugiyamaella lignohabitans 30034642 AWJ20_2702 CDS AWJ20_2702 NC_031674.1 2242089 2242769 R uncharacterized protein complement(2242089..2242769) Sugiyamaella lignohabitans 30034643 AWJ20_2703 CDS HSP42 NC_031674.1 2243038 2243835 R Small heat shock protein (sHSP) with chaperone activity; forms barrel-shaped oligomers that suppress unfolded protein aggregation; involved in cytoskeleton reorganization after heat shock; protein abundance increases and forms cytoplasmic foci in response to DNA replication stress; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IPI] [PMID 8576246]; GO_function: GO:0051082 - unfolded protein binding [Evidence ISS] [PMID 8576246]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IGI,IMP] [PMID 9199338]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp42p complement(2243038..2243835) Sugiyamaella lignohabitans 30034644 AWJ20_2704 CDS HEM12 NC_031674.1 2244424 2245230 R Uroporphyrinogen decarboxylase; catalyzes the fifth step in the heme biosynthetic pathway; localizes to both the cytoplasm and nucleus; a hem12 mutant has phenotypes similar to patients with porphyria cutanea tarda; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IDA] [PMID 2180703]; GO_function: GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IMP] [PMID 7035824]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 14559249]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 1471989]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 7035824]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; uroporphyrinogen decarboxylase HEM12 complement(2244424..2245230) Sugiyamaella lignohabitans 30034645 AWJ20_2705 CDS AML1 NC_031674.1 2246172 2246765 R hypothetical protein; similar to methyltransferase family members; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; required for replication of Brome mosaic virus in S. cerevisiae; expresses a circular RNA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence ISS] [PMID 15225602]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; Aml1p complement(2246172..2246765) Sugiyamaella lignohabitans 30034646 AWJ20_2706 CDS PKP1 NC_031674.1 2250014 2250352 R protein kinase PKP1 complement(2250014..2250352) Sugiyamaella lignohabitans 30034647 AWJ20_2707 CDS PAM16 NC_031674.1 2252335 2252691 R Subunit of the import motor (PAM complex); the PAM complex is a component of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); forms a 1:1 subcomplex with Pam18p and inhibits its cochaperone activity; contains a J-like domain; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IDA] [PMID 14981506]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 14981506]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 14981507]; GO_function: GO:0019904 - protein domain specific binding [Evidence IDA] [PMID 16105940]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP,IPI] [PMID 14981506]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP,IPI] [PMID 14981507]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pam16p complement(2252335..2252691) Sugiyamaella lignohabitans 30034648 AWJ20_2708 CDS SET3 NC_031674.1 2254886 2258131 D histone-binding protein SET3 2254886..2258131 Sugiyamaella lignohabitans 30034649 AWJ20_2709 CDS AWJ20_2709 NC_031674.1 2260980 2262635 D uncharacterized protein 2260980..2262635 Sugiyamaella lignohabitans 30034650 AWJ20_2710 CDS TSR4 NC_031674.1 2263137 2264135 D Cytoplasmic protein required for correct processing of 20S pre-rRNA; protein required for processing of the 20S pre-rRNA at site D to generate mature 18S rRNA; essential gene in S288C background but not in CEN.PK2; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IMP] [PMID 19806183]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Tsr4p 2263137..2264135 Sugiyamaella lignohabitans 30034652 AWJ20_2711 CDS IFM1 NC_031674.1 2264294 2266870 R Mitochondrial translation initiation factor 2; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 1935960]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 12729623]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 12729623]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 15935987]; GO_function: GO:0003743 - translation initiation factor activity [Evidence ISA] [PMID 1935960]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 1935960]; GO_process: GO:0070124 - mitochondrial translational initiation [Evidence IC] [PMID 15935987]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence ISA] [PMID 1935960]; translation initiation factor 2 complement(2264294..2266870) Sugiyamaella lignohabitans 30034653 AWJ20_2712 CDS UGA4 NC_031674.1 2269312 2271042 D GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p 2269312..2271042 Sugiyamaella lignohabitans 30034654 AWJ20_2713 CDS DBF4 NC_031674.1 2271297 2273318 R protein serine/threonine kinase activating protein DBF4 complement(2271297..2273318) Sugiyamaella lignohabitans 30034655 AWJ20_2714 CDS PST2 NC_031674.1 2274164 2274775 R Protein with similarity to a family of flavodoxin-like proteins; induced by oxidative stress in a Yap1p dependent manner; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress; PST2 has a paralog, RFS1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19064668]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Pst2p complement(2274164..2274775) Sugiyamaella lignohabitans 30034656 AWJ20_2715 CDS YFH7 NC_031674.1 2277733 2278674 D Putative kinase with similarity to the PRK/URK/PANK kinase subfamily; the PRK/URK/PANK subfamily of P-loop kinases is also known as phosphoribulokinase/uridine kinase/bacterial pantothenate kinase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 18004758]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence ISS] [PMID 18004758]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence ISS] [PMID 18004758]; Yfh7p 2277733..2278674 Sugiyamaella lignohabitans 30034657 AWJ20_2716 CDS AWJ20_2716 NC_031674.1 2279564 2279887 R uncharacterized protein complement(2279564..2279887) Sugiyamaella lignohabitans 30034658 AWJ20_2717 CDS AIM45 NC_031674.1 2281030 2282052 D Putative ortholog of mammalian ETF-alpha; interacts with frataxin, Yfh1p; null mutant displays elevated frequency of mitochondrial genome loss; may have a role in oxidative stress response; ETF-alpha is an electron transfer flavoprotein complex subunit; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Aim45p 2281030..2282052 Sugiyamaella lignohabitans 30034659 AWJ20_2718 CDS ARG8 NC_031674.1 2282469 2283743 D Acetylornithine aminotransferase; catalyzes the fourth step in the biosynthesis of the arginine precursor ornithine; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 205532]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003992 - N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity [Evidence IEA]; GO_function: GO:0003992 - N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity [Evidence IDA] [PMID 2199330]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence TAS] [PMID 12603335]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006592 - ornithine biosynthetic process [Evidence TAS] [PMID 205532]; acetylornithine transaminase 2282469..2283743 Sugiyamaella lignohabitans 30034660 AWJ20_2719 CDS AWJ20_2719 NC_031674.1 2284068 2284568 R uncharacterized protein complement(2284068..2284568) Sugiyamaella lignohabitans 30034661 AWJ20_2720 CDS GDE1 NC_031674.1 2287211 2290492 D Glycerophosphocholine (GroPCho) phosphodiesterase; hydrolyzes GroPCho to choline and glycerolphosphate, for use as a phosphate source and as a precursor for phosphocholine synthesis; may interact with ribosomes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0047389 - glycerophosphocholine phosphodiesterase activity [Evidence IMP,ISS] [PMID 16141200]; GO_function: GO:0008889 - glycerophosphodiester phosphodiesterase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA]; GO_process: GO:0046475 - glycerophospholipid catabolic process [Evidence IMP,ISS] [PMID 16141200]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; Gde1p 2287211..2290492 Sugiyamaella lignohabitans 30034663 AWJ20_2721 CDS vip1 NC_031674.1 2290708 2291499 R RNA-binding protein Vip1 complement(2290708..2291499) Sugiyamaella lignohabitans 30034664 AWJ20_2722 CDS PMS1 NC_031674.1 2292396 2295029 D ATP-binding protein required for mismatch repair; required for both mitosis and meiosis; functions as a heterodimer with Mlh1p; binds double- and single-stranded DNA via its N-terminal domain, similar to E. coli MutL; GO_component: GO:0032389 - MutLalpha complex [Evidence IEA]; GO_component: GO:0032389 - MutLalpha complex [Evidence IPI] [PMID 10570173]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 10938116]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 11717305]; GO_function: GO:0032135 - DNA insertion or deletion binding [Evidence IDA] [PMID 9368761]; GO_function: GO:0032139 - dinucleotide insertion or deletion binding [Evidence IDA] [PMID 9368761]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 11575920]; GO_function: GO:0000404 - heteroduplex DNA loop binding [Evidence IDA] [PMID 9368761]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 11575920]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 16702432]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 2685551]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IBA]; Pms1p 2292396..2295029 Sugiyamaella lignohabitans 30034665 AWJ20_2723 CDS RFC2 NC_031674.1 2295128 2296129 R Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; GO_component: GO:0031390 - Ctf18 RFC-like complex [Evidence IPI] [PMID 11389843]; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IDA] [PMID 8202350]; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12912927]; GO_component: GO:0031389 - Rad17 RFC-like complex [Evidence IDA] [PMID 12604797]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23613772]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 12604797]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 8995429]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0017076 - purine nucleotide binding [Evidence ISS] [PMID 7651383]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IMP] [PMID 9671499]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006272 - leading strand elongation [Evidence IDA] [PMID 1346062]; GO_process: GO:0006298 - mismatch repair [Evidence TAS] [PMID 10072354]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IPI] [PMID 11389843]; replication factor C subunit 2 complement(2295128..2296129) Sugiyamaella lignohabitans 30034666 AWJ20_2724 CDS LSG1 NC_031674.1 2297177 2299162 D Putative GTPase involved in 60S ribosomal subunit biogenesis; required for the release of Nmd3p from 60S subunits in the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12773575]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 12773575]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 16209721]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 10669874]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 10669874]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 20670889]; GO_process: GO:0000054 - ribosomal subunit export from nucleus [Evidence IMP,IPI] [PMID 12773575]; GO_process: GO:0006810 - transport [Evidence IEA]; putative GTPase LSG1 2297177..2299162 Sugiyamaella lignohabitans 30034667 AWJ20_2725 CDS USE1 NC_031674.1 2299532 2300143 D Essential SNARE protein localized to the ER; involved in retrograde traffic from the Golgi to the ER; forms a complex with the SNAREs Sec22p, Sec20p and Ufe1p; GO_component: GO:0031201 - SNARE complex [Evidence IDA,ISM] [PMID 12853481]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0071458 - integral component of cytoplasmic side of endoplasmic reticulum membrane [Evidence IDA] [PMID 12893879]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence ISA] [PMID 12853481]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 12853481]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 12893879]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048279 - vesicle fusion with endoplasmic reticulum [Evidence IC] [PMID 12853481]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Use1p 2299532..2300143 Sugiyamaella lignohabitans 30034668 AWJ20_2726 CDS CAT8 NC_031674.1 2300475 2303342 R DNA-binding transcription factor CAT8 complement(2300475..2303342) Sugiyamaella lignohabitans 30034669 AWJ20_2727 CDS AWJ20_2727 NC_031674.1 2306622 2307161 R Condensin complex subunit 3 complement(2306622..2307161) Sugiyamaella lignohabitans 30034670 AWJ20_2728 CDS YCG1 NC_031674.1 2307296 2309251 R Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation and chromatin binding of the condensin complex; required for clustering of tRNA genes at the nucleolus; required for replication slow zone (RSZ) breakage following Mec1p inactivation; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000796 - condensin complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IGI,ISS] [PMID 10749931]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IDA] [PMID 10811823]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IGI] [PMID 11864994]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence IEA]; GO_process: GO:0010032 - meiotic chromosome condensation [Evidence IMP] [PMID 14662740]; GO_process: GO:0051307 - meiotic chromosome separation [Evidence IMP] [PMID 14662740]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IEA]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IGI] [PMID 10749931]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 11864994]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 11864994]; GO_process: GO:0070550 - rDNA condensation [Evidence IMP] [PMID 18708580]; GO_process: GO:0007130 - synaptonemal complex assembly [Evidence IMP] [PMID 14662740]; GO_process: GO:0070058 - tRNA gene clustering [Evidence IMP] [PMID 18708579]; Ycg1p complement(2307296..2309251) Sugiyamaella lignohabitans 30034671 AWJ20_2729 CDS QCR2 NC_031674.1 2309725 2310987 D Subunit 2 of ubiquinol cytochrome-c reductase (Complex III); Complex III is a component of the mitochondrial inner membrane electron transport chain; phosphorylated; transcription is regulated by Hap1p, Hap2p/Hap3p, and heme; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030061 - mitochondrial crista [Evidence IDA] [PMID 19019989]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 10873857]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IMP] [PMID 3028797]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 3028797]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IDA] [PMID 3028797]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; ubiquinol--cytochrome-c reductase subunit 2 2309725..2310987 Sugiyamaella lignohabitans 30034672 AWJ20_2730 CDS SKI3 NC_031674.1 2311208 2315035 R Ski complex component and TPR protein; mediates 3'-5' RNA degradation by the cytoplasmic exosome; null mutants have superkiller phenotype of increased viral dsRNAs and are synthetic lethal with mutations in 5'-3' mRNA decay; mutations in the human ortholog, TTC37, causes Syndromic diarrhea/Trichohepatoenteric (SD/THE) syndrome; GO_component: GO:0055087 - Ski complex [Evidence IDA] [PMID 10744028]; GO_component: GO:0055087 - Ski complex [Evidence IDA,IPI] [PMID 18042677]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051607 - defense response to virus [Evidence IEA]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 10611222]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 9482746]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 11910110]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 17660569]; SKI complex subunit tetratricopeptide repeat protein SKI3 complement(2311208..2315035) Sugiyamaella lignohabitans 30034674 AWJ20_2731 CDS AWJ20_2731 NC_031674.1 2317626 2318966 D Fungal Genetics Stock Center 13768; peroxisomal biogenesis factor 2 2317626..2318966 Sugiyamaella lignohabitans 30034675 AWJ20_2732 CDS CDC9 NC_031674.1 2319154 2320662 R DNA ligase found in the nucleus and mitochondria; an essential enzyme that joins Okazaki fragments during DNA replication; also acts in ribonucleotide excision repair, base excision repair, and recombination; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IMP] [PMID 10531002]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10531002]; GO_component: GO:0005657 - replication fork [Evidence NAS] [PMID 9759502]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IEA,IEA]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IDA] [PMID 1445910]; GO_function: GO:0003910 - DNA ligase (ATP) activity [Evidence IDA] [PMID 6347688]; GO_function: GO:0003909 - DNA ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006266 - DNA ligation [Evidence IDA,IMP] [PMID 9759502]; GO_process: GO:0051103 - DNA ligation involved in DNA repair [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 9230305]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006284 - base-excision repair [Evidence IMP] [PMID 10052932]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006273 - lagging strand elongation [Evidence IDA,IMP] [PMID 9759502]; GO_process: GO:0035753 - maintenance of DNA trinucleotide repeats [Evidence IMP] [PMID 16079237]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IMP] [PMID 6749599]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 10052932]; DNA ligase (ATP) CDC9 complement(2319154..2320662) Sugiyamaella lignohabitans 30034676 AWJ20_2733 CDS VHS1 NC_031674.1 2326367 2327899 D putative serine/threonine protein kinase VHS1 2326367..2327899 Sugiyamaella lignohabitans 30034677 AWJ20_2734 CDS CDC14 NC_031674.1 2330615 2332042 R Protein phosphatase required for mitotic exit; required for rDNA segregation; located in nucleolus until liberated by the FEAR and Mitotic Exit Network in anaphase, enabling it to effect a decrease in CDK/B-cyclin activity and mitotic exit; required for meiosis I spindle disassembly; released from nucleolus upon entry into anaphase I of meiosis, resequestered in metaphase II, then released again upon entry into anaphase II; maintained in nucleolus by Cdc55p in early meiosis; GO_component: GO:0030869 - RENT complex [Evidence IDA] [PMID 10219244]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12062061]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 12062061]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA] [PMID 24319056]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA] [PMID 9295359]; GO_function: GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0008138 - protein tyrosine/serine/threonine phosphatase activity [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0051304 - chromosome separation [Evidence IMP] [PMID 16769819]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0051229 - meiotic spindle disassembly [Evidence IMP] [PMID 12737806]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IMP] [PMID 6749599]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0035335 - peptidyl-tyrosine dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 20923974]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 9295359]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence IGI,IPI] [PMID 10219244]; phosphoprotein phosphatase CDC14 complement(2330615..2332042) Sugiyamaella lignohabitans 30034678 AWJ20_2735 CDS FAT1 NC_031674.1 2334990 2336894 D Very long chain fatty acyl-CoA synthetase and fatty acid transporter; activates imported fatty acids with a preference for very long lengths (C20-C26); has a separate function in the transport of long chain fatty acids; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9988704]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031235 - intrinsic component of the cytoplasmic side of the plasma membrane [Evidence IDA] [PMID 17679730]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IMP] [PMID 9660783]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0005324 - long-chain fatty acid transporter activity [Evidence IMP] [PMID 9079682]; GO_function: GO:0031957 - very long-chain fatty acid-CoA ligase activity [Evidence IMP] [PMID 9660783]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0015909 - long-chain fatty acid transport [Evidence IMP] [PMID 10880966]; GO_process: GO:0015909 - long-chain fatty acid transport [Evidence IGI,IMP] [PMID 12601005]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0000038 - very long-chain fatty acid metabolic process [Evidence IMP] [PMID 9660783]; GO_process: GO:0000038 - very long-chain fatty acid metabolic process [Evidence IMP] [PMID 9988704]; long-chain fatty acid transporter FAT1 2334990..2336894 Sugiyamaella lignohabitans 30034679 AWJ20_2736 CDS LEU2 NC_031674.1 2337096 2338190 R Beta-isopropylmalate dehydrogenase (IMDH); catalyzes the third step in the leucine biosynthesis pathway; can additionally catalyze the conversion of beta-ethylmalate into alpha-ketovalerate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 4355481]; GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IDA] [PMID 3071718]; GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IMP] [PMID 6297759]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IMP] [PMID 23642236]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IMP] [PMID 6297759]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; 3-isopropylmalate dehydrogenase complement(2337096..2338190) Sugiyamaella lignohabitans 30034680 AWJ20_2737 CDS STM2 NC_031674.1 2339511 2340299 D Uncharacterized protein C16G5.07c 2339511..2340299 Sugiyamaella lignohabitans 30034681 AWJ20_2738 CDS AWJ20_2738 NC_031674.1 2340582 2341199 D uncharacterized protein 2340582..2341199 Sugiyamaella lignohabitans 30034682 AWJ20_2740 CDS DIT2 NC_031674.1 2342530 2344101 R N-formyltyrosine oxidase; sporulation-specific microsomal enzyme involved in the production of N,N-bisformyl dityrosine required for spore wall maturation, homologous to cytochrome P-450s; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8183942]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA,IMP] [PMID 8183942]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Dit2p complement(2342530..2344101) Sugiyamaella lignohabitans 30034685 AWJ20_2741 CDS SCP160 NC_031674.1 2347745 2351572 D Essential RNA-binding G protein effector of mating response pathway; mainly associated with nuclear envelope and ER, interacts in mRNA-dependent manner with translating ribosomes via multiple KH domains, similar to vertebrate vigilins; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23222640]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 11278502]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 8533468]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 11278502]; GO_function: GO:0001965 - G-protein alpha-subunit binding [Evidence IPI] [PMID 14536090]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 11278502]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16632467]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI,IMP] [PMID 16632467]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 8533468]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence IPI] [PMID 11278502]; GO_process: GO:0045141 - meiotic telomere clustering [Evidence IMP] [PMID 16632467]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IGI] [PMID 14536090]; Scp160p 2347745..2351572 Sugiyamaella lignohabitans 30034686 AWJ20_2742 CDS FCY22 NC_031674.1 2351914 2353398 R Putative purine-cytosine permease; very similar to Fcy2p but cannot substitute for its function; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISA] [PMID 16845689]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IMP] [PMID 16845689]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015856 - cytosine transport [Evidence IMP] [PMID 16845689]; GO_process: GO:0015851 - nucleobase transport [Evidence IEA]; GO_process: GO:0072530 - purine-containing compound transmembrane transport [Evidence ISA] [PMID 16845689]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Fcy22p complement(2351914..2353398) Sugiyamaella lignohabitans 30034687 AWJ20_2743 CDS LYS4 NC_031674.1 2354065 2356092 D Homoaconitase; catalyzes the conversion of homocitrate to homoisocitrate, which is a step in the lysine biosynthesis pathway; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0004409 - homoaconitate hydratase activity [Evidence IEA,IEA]; GO_function: GO:0004409 - homoaconitate hydratase activity [Evidence ISA] [PMID 9268014]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IMP] [PMID 2507177]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; homoaconitate hydratase LYS4 2354065..2356092 Sugiyamaella lignohabitans 30034688 AWJ20_2744 CDS SEF1 NC_031674.1 2356645 2358462 D Putative transcription factor; has homolog in Kluyveromyces lactis; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Sef1p 2356645..2358462 Sugiyamaella lignohabitans 30034689 AWJ20_2745 CDS LST8 NC_031674.1 2358866 2359795 D Protein required for the transport of Gap1p; required for the transport of amino acid permease Gap1p from the Golgi to the cell surface; component of the TOR signaling pathway; associates with both Tor1p and Tor2p; contains a WD-repeat; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 12719473]; GO_component: GO:0031931 - TORC1 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0010008 - endosome membrane [Evidence IDA] [PMID 12719473]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IDA] [PMID 12631735]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12631735]; GO_function: GO:0030295 - protein kinase activator activity [Evidence IMP] [PMID 16002396]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 12719473]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 12408816]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 12719473]; GO_process: GO:0031930 - mitochondria-nucleus signaling pathway [Evidence IMP] [PMID 11742997]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 12408816]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 12719473]; GO_process: GO:0006810 - transport [Evidence IMP] [PMID 9409822]; TOR complex subunit LST8 2358866..2359795 Sugiyamaella lignohabitans 30034690 AWJ20_2746 CDS NMD2 NC_031674.1 2360185 2363758 D Protein involved in the nonsense-mediated mRNA decay (NMD) pathway; interacts with Nam7p and Upf3p; involved in telomere maintenance; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16043493]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 9268361]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 23390378]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI] [PMID 12881429]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 15388879]; Nmd2p join(2360185..2360193,2360267..2363758) Sugiyamaella lignohabitans 30034691 AWJ20_2747 CDS PTC7 NC_031674.1 2363876 2365222 R Type 2C serine/threonine protein phosphatase (PP2C); alternatively spliced to create two mRNA isoforms; protein from spliced form localizes to the mitochondria while the one from the unspliced form is localized to the nuclear envelope; activates coenzyme Q6 biosynthesis by dephosphorylation of demethoxy-Q6 hydroxylase Coq7p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11327310]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 18180296]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19564484]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 19564484]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA] [PMID 23940037]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 12220683]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 23940037]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 23940037]; type 2C protein phosphatase PTC7 complement(2363876..2365222) Sugiyamaella lignohabitans 30034692 AWJ20_2748 CDS AWJ20_2748 NC_031674.1 2366475 2367641 D D-amino acid oxidase (predicted) 2366475..2367641 Sugiyamaella lignohabitans 30034693 AWJ20_2749 CDS AWJ20_2749 NC_031674.1 2368984 2369415 D uncharacterized protein 2368984..2369415 Sugiyamaella lignohabitans 30034694 AWJ20_2750 CDS OPT2 NC_031674.1 2369976 2371688 D Oligopeptide transporter; member of the OPT family, with potential orthologs in S. pombe and C. albicans; also plays a role in formation of mature vacuoles; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IC] [PMID 9643541]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 19767828]; Opt2p 2369976..2371688 Sugiyamaella lignohabitans 30034696 AWJ20_2751 CDS UFD1 NC_031674.1 2371768 2373867 R Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase; polyubiquitin binding protein that assists in the dislocation of misfolded, ERAD substrates that are subsequently delivered to the proteasome for degradation; involved in regulated destruction of ER membrane proteins such as HMG-CoA reductase (Hmg1/2p) and cytoplasmic proteins (Fbp1p); involved in mobilizing membrane bound transaction factors by regulated Ub/proteasome-dependent processing (RUP); GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11598205]; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11733065]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11733065]; GO_function: GO:0031593 - polyubiquitin binding [Evidence IDA] [PMID 16004872]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 16004872]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11740563]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11813000]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11739805]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18812321]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11598205]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11733065]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20206597]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11740563]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11813000]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; polyubiquitin-binding protein UFD1 complement(2371768..2373867) Sugiyamaella lignohabitans 30034697 AWJ20_2752 CDS GAL4 NC_031674.1 2374172 2376319 R galactose-responsive transcription factor GAL4 complement(2374172..2376319) Sugiyamaella lignohabitans 30034698 AWJ20_2753 CDS AWJ20_2753 NC_031674.1 2376640 2377320 R uncharacterized protein complement(2376640..2377320) Sugiyamaella lignohabitans 30034699 AWJ20_2755 CDS AWJ20_2755 NC_031674.1 2378117 2379250 R uncharacterized protein complement(2378117..2379250) Sugiyamaella lignohabitans 30034701 AWJ20_2756 CDS MNN2 NC_031674.1 2380716 2382374 D Alpha-1,2-mannosyltransferase; responsible for addition of the first alpha-1,2-linked mannose to form the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 9756928]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IMP] [PMID 9756928]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 9756928]; Mnn2p 2380716..2382374 Sugiyamaella lignohabitans 30034702 AWJ20_2757 CDS AWJ20_2757 NC_031674.1 2383307 2383831 D uncharacterized protein 2383307..2383831 Sugiyamaella lignohabitans 30034703 AWJ20_2758 CDS SOR1 NC_031674.1 2383891 2384982 R Sorbitol dehydrogenase; expression is induced in the presence of sorbitol or xylose; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003939 - L-iditol 2-dehydrogenase activity [Evidence IEA]; GO_function: GO:0003939 - L-iditol 2-dehydrogenase activity [Evidence IDA,ISS] [PMID 8125328]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0019318 - hexose metabolic process [Evidence IEP] [PMID 8125328]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; L-iditol 2-dehydrogenase SOR1 complement(2383891..2384982) Sugiyamaella lignohabitans 30034704 AWJ20_2759 CDS AWJ20_2759 NC_031674.1 2386297 2386914 R uncharacterized protein complement(2386297..2386914) Sugiyamaella lignohabitans 30034705 AWJ20_2760 CDS AWJ20_2760 NC_031674.1 2388536 2389951 R homogentisate 1,2-dioxygenase complement(join(2388536..2389820,2389884..2389951)) Sugiyamaella lignohabitans 30034707 AWJ20_2761 CDS AWJ20_2761 NC_031674.1 2390675 2392258 R uncharacterized protein complement(2390675..2392258) Sugiyamaella lignohabitans 30034708 AWJ20_2762 CDS FOX2 NC_031674.1 2392758 2393516 R 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase; multifunctional enzyme of the peroxisomal fatty acid beta-oxidation pathway; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence ISM] [PMID 1551874]; GO_function: GO:0003857 - 3-hydroxyacyl-CoA dehydrogenase activity [Evidence IDA] [PMID 1551874]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004300 - enoyl-CoA hydratase activity [Evidence IDA] [PMID 1551874]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 10497229]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 1551874]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; bifunctional hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase FOX2 complement(2392758..2393516) Sugiyamaella lignohabitans 30034709 AWJ20_2763 CDS HOL1 NC_031674.1 2394657 2396282 D Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p 2394657..2396282 Sugiyamaella lignohabitans 30034710 AWJ20_2764 CDS AWJ20_2764 NC_031674.1 2396662 2397963 D Fungal Genetics Stock Center 12727; fumarylacetoacetase 2396662..2397963 Sugiyamaella lignohabitans 30034711 AWJ20_2765 CDS RIO1 NC_031674.1 2401314 2402453 D protein kinase RIO1 2401314..2402453 Sugiyamaella lignohabitans 30034712 AWJ20_2766 CDS RTC5 NC_031674.1 2402502 2403968 R hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; null mutation suppresses cdc13-1 temperature sensitivity; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Rtc5p complement(2402502..2403968) Sugiyamaella lignohabitans 30034713 AWJ20_2767 CDS VMS1 NC_031674.1 2407427 2409313 D Component of a Cdc48p-complex involved in protein quality control; exhibits cytosolic and ER-membrane localization, with Cdc48p, during normal growth, and contributes to ER-associated degradation (ERAD) of specific substrates at a step after their ubiquitination; forms a mitochondrially-associated complex with Cdc48p and Npl4p under oxidative stress that is required for ubiquitin-mediated mitochondria-associated protein degradation (MAD); conserved in C. elegans and humans; GO_component: GO:0036266 - Cdc48p-Npl4p-Vms1p AAA ATPase complex [Evidence IDA] [PMID 21070972]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 21070972]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 21148305]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 21070972]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21148305]; GO_process: GO:0072671 - mitochondria-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21070972]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 22718752]; Vms1p 2407427..2409313 Sugiyamaella lignohabitans 30034714 AWJ20_2768 CDS RDH54 NC_031674.1 2409411 2412110 R DNA-dependent ATPase; DNA recombination/repair translocase, supercoils DNA and promotes DNA strand opening; stimulates strand exchange by modifying dsDNA topology; involved in recombinational repair of DNA double-strand breaks (DSBs) during mitosis and meiosis; phosphorylated in Mec1p-, Rad53p-dependent way in response to one DSB; contributes to remodelling of nucleosomes; proposed to be involved in crossover interference; interacts with Dmc1p; stimulates Dmc1p and Rad51p; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 16831867]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 10970884]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 10970884]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IMP] [PMID 16831867]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA,IMP] [PMID 16831867]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IDA,IMP] [PMID 16831867]; GO_process: GO:0032392 - DNA geometric change [Evidence IDA] [PMID 10970884]; GO_process: GO:0032392 - DNA geometric change [Evidence IDA,IMP] [PMID 16831867]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 16831867]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 16831867]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0030491 - heteroduplex formation [Evidence IDA] [PMID 10970884]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0045144 - meiotic sister chromatid segregation [Evidence IMP] [PMID 16230461]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IGI,IMP] [PMID 9409819]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IGI,IMP] [PMID 9409820]; DNA-dependent ATPase RDH54 complement(2409411..2412110) Sugiyamaella lignohabitans 30034715 AWJ20_2769 CDS RTA1 NC_031674.1 2412387 2413268 R Protein involved in 7-aminocholesterol resistance; has seven potential membrane-spanning regions; expression is induced under both low-heme and low-oxygen conditions; member of the fungal lipid-translocating exporter (LTE) family of protein; RTA1 has a paralog, YLR046C, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12524434]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 8660468]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22129104]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Rta1p complement(2412387..2413268) Sugiyamaella lignohabitans 30034716 AWJ20_2770 CDS ECM22 NC_031674.1 2413620 2414819 D Sterol regulatory element binding protein; regulates transcription of sterol biosynthetic genes; contains Zn[2]-Cys[6] binuclear cluster; relocates from intracellular membranes to perinuclear foci on sterol depletion; ECM22 has a paralog, UPC2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 18675371]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 11533229]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 18675371]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 11533229]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 11533229]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 16055745]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0035961 - positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11533229]; GO_process: GO:0035961 - positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16055745]; GO_process: GO:0035969 - positive regulation of sterol import by positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 11208779]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ecm22p 2413620..2414819 Sugiyamaella lignohabitans 30034718 AWJ20_2771 CDS DSE4 NC_031674.1 2415002 2417857 R Daughter cell-specific secreted protein with similarity to glucanases; degrades cell wall from the daughter side causing daughter to separate from mother; GO_component: GO:0030428 - cell septum [Evidence IDA] [PMID 12455695]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0005576 - extracellular region [Evidence ISS] [PMID 11747810]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11935221]; GO_function: GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity [Evidence IGI] [PMID 12455695]; GO_function: GO:0052861 - glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group [Evidence IEA,IEA]; GO_function: GO:0052862 - glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_process: GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IEP,ISS] [PMID 11747810]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 16328626]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Dse4p complement(2415002..2417857) Sugiyamaella lignohabitans 30034719 AWJ20_2772 CDS TBF1 NC_031674.1 2418866 2421550 R Telobox-containing general regulatory factor; binds TTAGGG repeats within subtelomeric anti-silencing regions (STARs), blocking silent chromatin propagation; binds majority of snoRNA gene promoters, required for full snoRNA expression; caps DSB flanked by long T2AG3 repeats and blocks checkpoint activation; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0000784 - nuclear chromosome, telomeric region [Evidence IDA] [PMID 20513435]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 20513435]; GO_function: GO:0000982 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity [Evidence IDA] [PMID 20513435]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0043035 - chromatin insulator sequence binding [Evidence IDA] [PMID 11258704]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IEA]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IDA] [PMID 20513435]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IDA] [PMID 11258704]; GO_process: GO:0032211 - negative regulation of telomere maintenance via telomerase [Evidence IGI] [PMID 16467854]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001015 - snoRNA transcription from an RNA polymerase II promoter [Evidence IDA,IMP] [PMID 20513435]; GO_process: GO:0010833 - telomere maintenance via telomere lengthening [Evidence IDA] [PMID 17917674]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Tbf1p complement(2418866..2421550) Sugiyamaella lignohabitans 30034720 AWJ20_2773 CDS BIO2 NC_031674.1 2422447 2423646 D Biotin synthase; catalyzes the conversion of dethiobiotin to biotin, which is the last step of the biotin biosynthesis pathway; complements E. coli bioB mutant; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0004076 - biotin synthase activity [Evidence IEA,IEA]; GO_function: GO:0004076 - biotin synthase activity [Evidence IMP] [PMID 10525840]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009102 - biotin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009102 - biotin biosynthetic process [Evidence IMP] [PMID 10525840]; biotin synthase 2422447..2423646 Sugiyamaella lignohabitans 30034721 AWJ20_2774 CDS AWJ20_2774 NC_031674.1 2423733 2425586 R uncharacterized protein complement(2423733..2425586) Sugiyamaella lignohabitans 30034722 AWJ20_2775 CDS YPS3 NC_031674.1 2427309 2428481 R Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p complement(2427309..2428481) Sugiyamaella lignohabitans 30034723 AWJ20_2776 CDS YPS1 NC_031674.1 2429551 2430717 R Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; YPS1 has a paralog, MKC7, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA] [PMID 8389368]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0016485 - protein processing [Evidence IDA] [PMID 8626758]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps1p complement(2429551..2430717) Sugiyamaella lignohabitans 30034724 AWJ20_2779 CDS PCM1 NC_031674.1 2435308 2436918 D Essential N-acetylglucosamine-phosphate mutase; converts GlcNAc-6-P to GlcNAc-1-P, which is a precursor for the biosynthesis of chitin and for the formation of N-glycosylated mannoproteins and glycosylphosphatidylinositol anchors; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IBA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016868 - intramolecular transferase activity, phosphotransferases [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004610 - phosphoacetylglucosamine mutase activity [Evidence IEA,IEA]; GO_function: GO:0004610 - phosphoacetylglucosamine mutase activity [Evidence IMP,ISS] [PMID 8174553]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IBA]; GO_process: GO:0006048 - UDP-N-acetylglucosamine biosynthetic process [Evidence IBA,IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IMP] [PMID 8174553]; GO_process: GO:0019255 - glucose 1-phosphate metabolic process [Evidence IBA]; phosphoacetylglucosamine mutase PCM1 2435308..2436918 Sugiyamaella lignohabitans 30034727 AWJ20_2780 CDS AWJ20_2780 NC_031674.1 2438651 2439277 D uncharacterized protein 2438651..2439277 Sugiyamaella lignohabitans 30034729 AWJ20_2781 CDS spc25 NC_031674.1 2439346 2440077 R kinetochore protein Spc25 complement(2439346..2440077) Sugiyamaella lignohabitans 30034730 AWJ20_2782 CDS KEL3 NC_031674.1 2440492 2442396 D Cytoplasmic hypothetical protein; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Kel3p 2440492..2442396 Sugiyamaella lignohabitans 30034731 AWJ20_2783 CDS AWJ20_2783 NC_031674.1 2443919 2444317 R uncharacterized protein complement(2443919..2444317) Sugiyamaella lignohabitans 30034732 AWJ20_2784 CDS AWJ20_2784 NC_031674.1 2444476 2445726 R uncharacterized protein complement(2444476..2445726) Sugiyamaella lignohabitans 30034733 AWJ20_2785 CDS MET3 NC_031674.1 2448403 2450121 D ATP sulfurylase; catalyzes the primary step of intracellular sulfate activation, essential for assimilatory reduction of sulfate to sulfide, involved in methionine metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IDA] [PMID 10092498]; GO_function: GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IMP] [PMID 197388]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA]; GO_process: GO:0070814 - hydrogen sulfide biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0000103 - sulfate assimilation [Evidence IEA,IEA]; GO_process: GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IMP] [PMID 197388]; GO_process: GO:0000096 - sulfur amino acid metabolic process [Evidence IEA]; GO_process: GO:0000096 - sulfur amino acid metabolic process [Evidence IMP] [PMID 1101032]; sulfate adenylyltransferase 2448403..2450121 Sugiyamaella lignohabitans 30034734 AWJ20_2786 CDS AWJ20_2786 NC_031674.1 2450322 2451620 R Max-like protein X complement(2450322..2451620) Sugiyamaella lignohabitans 30034735 AWJ20_2787 CDS CDC20 NC_031674.1 2453889 2455475 D ubiquitin-protein transferase activating protein CDC20 2453889..2455475 Sugiyamaella lignohabitans 30034736 AWJ20_2788 CDS PTC1 NC_031674.1 2455669 2456817 R Type 2C protein phosphatase (PP2C); dephosphorylates Hog1p, inactivating osmosensing MAPK cascade; involved in Fus3p activation during pheromone response; deletion affects precursor tRNA splicing, mitochondrial inheritance, and sporulation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11113180]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11113180]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 10580002]; GO_process: GO:0000173 - inactivation of MAPK activity involved in osmosensory signaling pathway [Evidence IDA,IGI,IMP] [PMID 11113180]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IMP] [PMID 9529388]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 20400943]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 10580002]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 11113180]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IMP] [PMID 8196609]; type 2C protein phosphatase PTC1 complement(2455669..2456817) Sugiyamaella lignohabitans 30034737 AWJ20_2789 CDS SNF4 NC_031674.1 2459689 2460750 R Activating gamma subunit of the AMP-activated Snf1p kinase complex; additional subunits of the complex are Snf1p and a Sip1p/Sip2p/Gal83p family member; activates glucose-repressed genes, represses glucose-induced genes; role in sporulation, and peroxisome biogenesis; protein abundance increases in response to DNA replication stress; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IDA] [PMID 12393914]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IDA,IPI] [PMID 2481228]; GO_component: GO:0031588 - AMP-activated protein kinase complex [Evidence IPI] [PMID 9121458]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17237508]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 2481228]; GO_component: GO:0005641 - nuclear envelope lumen [Evidence IDA] [PMID 17237508]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17237508]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 2481228]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562756]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IMP] [PMID 11486005]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IGI,IMP] [PMID 2557546]; GO_function: GO:0004679 - AMP-activated protein kinase activity [Evidence IMP] [PMID 7913470]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043539 - protein serine/threonine kinase activator activity [Evidence IMP] [PMID 11486005]; GO_function: GO:0043539 - protein serine/threonine kinase activator activity [Evidence IGI,IMP] [PMID 2557546]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IMP] [PMID 1355328]; GO_process: GO:0045722 - positive regulation of gluconeogenesis [Evidence IMP,IPI] [PMID 2481228]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 11486005]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 2557546]; GO_process: GO:0006468 - protein phosphorylation [Evidence IGI,IMP] [PMID 7913470]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 2557546]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 10921902]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; AMP-activated serine/threonine-protein kinase regulatory subunit SNF4 complement(2459689..2460750) Sugiyamaella lignohabitans 30034738 AWJ20_2790 CDS PDI1 NC_031674.1 2462028 2463578 D Protein disulfide isomerase; multifunctional protein of ER lumen, essential for formation of disulfide bonds in secretory and cell-surface proteins, unscrambles non-native disulfide bonds; key regulator of Ero1p; forms complex with Mnl1p that has exomannosidase activity, processing unfolded protein-bound Man8GlcNAc2 oligosaccharides to Man7GlcNAc2, promoting degradation in unfolded protein response; PDI1 has a paralog, EUG1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 1761554]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 16002399]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IMP] [PMID 11157982]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IDA] [PMID 16413482]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16002399]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0006662 - glycerol ether metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 11157982]; protein disulfide isomerase PDI1 2462028..2463578 Sugiyamaella lignohabitans 30034740 AWJ20_2791 CDS GRH1 NC_031674.1 2463797 2465227 R Acetylated cis-Golgi protein, involved in ER to Golgi transport; homolog of human GRASP65; forms a complex with the coiled-coil protein Bug1p; mutants are compromised for the fusion of ER-derived vesicles with Golgi membranes; protein abundance increases in response to DNA replication stress; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 17261844]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 17261844]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA,IMP] [PMID 17261844]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10417390]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 17261844]; GO_process: GO:0007030 - Golgi organization [Evidence ISS] [PMID 10417390]; GO_process: GO:0009306 - protein secretion [Evidence IMP] [PMID 20156967]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Grh1p complement(2463797..2465227) Sugiyamaella lignohabitans 30034741 AWJ20_2792 CDS AWJ20_2792 NC_031674.1 2471696 2473804 D uncharacterized protein 2471696..2473804 Sugiyamaella lignohabitans 30034742 AWJ20_2793 CDS SWC5 NC_031674.1 2473963 2474793 R Component of the SWR1 complex; complex exchanges histone variant H2AZ (Htz1p) for chromatin-bound histone H2A; protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 14645854]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI,IPI] [PMID 14690608]; GO_process: GO:0043486 - histone exchange [Evidence IMP] [PMID 16299513]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Swc5p complement(2473963..2474793) Sugiyamaella lignohabitans 30034743 AWJ20_2794 CDS POL5 NC_031674.1 2476627 2479710 R DNA Polymerase phi; has sequence similarity to the human MybBP1A and weak sequence similarity to B-type DNA polymerases, not required for chromosomal DNA replication; required for the synthesis of rRNA; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12093911]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA,ISS] [PMID 12093911]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 12093911]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 12093911]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Pol5p complement(2476627..2479710) Sugiyamaella lignohabitans 30034744 AWJ20_2795 CDS MDL2 NC_031674.1 2481921 2484341 D Mitochondrial inner membrane half-type ABC transporter; required for respiratory growth at high temperature; localizes to vacuole membrane in response to H2O2; similar to human TAP1 and TAP2 implicated in bare lymphocyte syndrome and Wegener-like granulomatosis; GO_component: GO:0016021 - integral component of membrane [Evidence IBA,IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11251115]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IRD]; GO_component: GO:0005774 - vacuolar membrane [Evidence IDA] [PMID 23509072]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0015421 - oligopeptide-transporting ATPase activity [Evidence IBA]; GO_function: GO:0015421 - oligopeptide-transporting ATPase activity [Evidence ISA] [PMID 11251115]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IDA] [PMID 23509072]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090374 - oligopeptide export from mitochondrion [Evidence ISA] [PMID 11251115]; GO_process: GO:0006857 - oligopeptide transport [Evidence ISA] [PMID 11251115]; GO_process: GO:0055085 - transmembrane transport [Evidence IBA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette permease MDL2 2481921..2484341 Sugiyamaella lignohabitans 30034745 AWJ20_2796 CDS AWJ20_2796 NC_031674.1 2484461 2485522 R uncharacterized protein complement(2484461..2485522) Sugiyamaella lignohabitans 30034746 AWJ20_2797 CDS MET2 NC_031674.1 2486106 2487551 D L-homoserine-O-acetyltransferase; catalyzes the conversion of homoserine to O-acetyl homoserine which is the first step of the methionine biosynthetic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0004414 - homoserine O-acetyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004414 - homoserine O-acetyltransferase activity [Evidence IDA,IMP] [PMID 3301801]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009092 - homoserine metabolic process [Evidence IDA,IMP] [PMID 3301801]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 6035500]; GO_process: GO:0000096 - sulfur amino acid metabolic process [Evidence IMP] [PMID 1101032]; homoserine O-acetyltransferase 2486106..2487551 Sugiyamaella lignohabitans 30034747 AWJ20_2798 CDS AWJ20_2798 NC_031674.1 2489039 2491744 D uncharacterized protein 2489039..2491744 Sugiyamaella lignohabitans 30034748 AWJ20_2799 CDS DIM1 NC_031674.1 2492626 2493639 D Essential 18S rRNA dimethylase (dimethyladenosine transferase); responsible for conserved m6(2)Am6(2)A dimethylation in 3'-terminal loop of 18S rRNA, part of 90S and 40S pre-particles in nucleolus, involved in pre-ribosomal RNA processing; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IC] [PMID 8064863]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0052909 - 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))- dimethyltransferase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO_function: GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]; GO_function: GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence ISS] [PMID 8064863]; GO_function: GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8064863]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IEA,IEA]; GO_process: GO:0000154 - rRNA modification [Evidence IEA]; GO_process: GO:0000154 - rRNA modification [Evidence IMP] [PMID 8064863]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Dim1p 2492626..2493639 Sugiyamaella lignohabitans 30034749 AWJ20_2800 CDS ATG26 NC_031674.1 2493818 2497213 R UDP-glucose:sterol glucosyltransferase; conserved enzyme involved in synthesis of sterol glucoside membrane lipids; in contrast to ATG26 from P. pastoris, S. cerevisiae ATG26 is not involved in autophagy; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016906 - sterol 3-beta-glucosyltransferase activity [Evidence IEA]; GO_function: GO:0016906 - sterol 3-beta-glucosyltransferase activity [Evidence IDA] [PMID 10224056]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0032120 - ascospore-type prospore membrane assembly [Evidence IGI] [PMID 18756268]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0030259 - lipid glycosylation [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; GO_process: GO:0016125 - sterol metabolic process [Evidence IMP] [PMID 10224056]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg26p complement(2493818..2497213) Sugiyamaella lignohabitans 30034752 AWJ20_2801 CDS PEP12 NC_031674.1 2501805 2502560 R SNAP receptor PEP12 complement(2501805..2502560) Sugiyamaella lignohabitans 30034753 AWJ20_2802 CDS TFC3 NC_031674.1 2503976 2508106 D transcription factor TFIIIC subunit TFC3 2503976..2508106 Sugiyamaella lignohabitans 30034754 AWJ20_2803 CDS AWJ20_2803 NC_031674.1 2508583 2509971 D uncharacterized protein 2508583..2509971 Sugiyamaella lignohabitans 30034755 AWJ20_2804 CDS AWJ20_2804 NC_031674.1 2510885 2511436 D uncharacterized protein 2510885..2511436 Sugiyamaella lignohabitans 30034756 AWJ20_2805 CDS ERG26 NC_031674.1 2513977 2515047 D C-3 sterol dehydrogenase; catalyzes the second of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11279045]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 12119386]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003854 - 3-beta-hydroxy-delta5-steroid dehydrogenase activity [Evidence IEA]; GO_function: GO:0000252 - C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity [Evidence IDA] [PMID 9811880]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0047012 - sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 9811880]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) 2513977..2515047 Sugiyamaella lignohabitans 30034757 AWJ20_2806 CDS MED8 NC_031674.1 2518058 2518678 D Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 12054864]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_function: GO:0001106 - RNA polymerase II transcription corepressor activity [Evidence IPI] [PMID 16528100]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA] [PMID 16964259]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 18381891]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15705057]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 18381891]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Med8p 2518058..2518678 Sugiyamaella lignohabitans 30034758 AWJ20_2807 CDS FCF2 NC_031674.1 2518885 2519757 R Nucleolar protein involved in the early steps of 35S rRNA processing; interacts with Faf1p; member of a transcriptionally co-regulated set of genes called the RRB regulon; essential gene; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Fcf2p complement(2518885..2519757) Sugiyamaella lignohabitans 30034759 AWJ20_2808 CDS PRI2 NC_031674.1 2520047 2521441 R Subunit of DNA primase; DNA primase is required for DNA synthesis and double-strand break repair; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 22593576]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 3888995]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:1990077 - primosome complex [Evidence IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003896 - DNA primase activity [Evidence IEA]; GO_function: GO:0003896 - DNA primase activity [Evidence IDA] [PMID 3061469]; GO_function: GO:0003896 - DNA primase activity [Evidence IDA] [PMID 3888995]; GO_function: GO:0003896 - DNA primase activity [Evidence IGI,IMP] [PMID 8436268]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 20404922]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 2023935]; GO_process: GO:0006270 - DNA replication initiation [Evidence IC] [PMID 3888995]; GO_process: GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA,IEA]; GO_process: GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IDA] [PMID 2644256]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 10025407]; GO_process: GO:0006273 - lagging strand elongation [Evidence IC] [PMID 3888995]; DNA primase subunit PRI2 complement(2520047..2521441) Sugiyamaella lignohabitans 30034760 AWJ20_2809 CDS HAP5 NC_031674.1 2522522 2523514 D Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex; complex is heme-activated and glucose repressed; complex is a transcriptional activator and global regulator of respiratory gene expression; required for assembly and DNA binding activity of the complex; GO_component: GO:0016602 - CCAAT-binding factor complex [Evidence IEA]; GO_component: GO:0016602 - CCAAT-binding factor complex [Evidence IDA,IPI] [PMID 7828851]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 15343339]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 7828851]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence ISA] [PMID 16215174]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IC] [PMID 7828851]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12614847]; GO_process: GO:0043457 - regulation of cellular respiration [Evidence IGI] [PMID 7828851]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hap5p 2522522..2523514 Sugiyamaella lignohabitans 30034761 AWJ20_2810 CDS DIC1 NC_031674.1 2525069 2525908 D Mitochondrial dicarboxylate carrier; integral membrane protein, catalyzes a dicarboxylate-phosphate exchange across the inner mitochondrial membrane, transports cytoplasmic dicarboxylates into the mitochondrial matrix; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005740 - mitochondrial envelope [Evidence IDA] [PMID 15591051]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0005310 - dicarboxylic acid transmembrane transporter activity [Evidence IDA] [PMID 9020177]; GO_function: GO:0005310 - dicarboxylic acid transmembrane transporter activity [Evidence IDA] [PMID 9559855]; GO_process: GO:0006835 - dicarboxylic acid transport [Evidence IDA] [PMID 9020177]; GO_process: GO:0006835 - dicarboxylic acid transport [Evidence IDA] [PMID 9559855]; GO_process: GO:0006817 - phosphate ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Dic1p 2525069..2525908 Sugiyamaella lignohabitans 30034763 AWJ20_2811 CDS TOR1 NC_031674.1 2527846 2533908 R PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that controls growth in response to nutrients by regulating translation, transcription, ribosome biogenesis, nutrient transport and autophagy; involved in meiosis; TOR1 has a paralog, TOR2, that arose from the whole genome duplication; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 12719473]; GO_component: GO:0031931 - TORC1 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16900101]; GO_component: GO:0010008 - endosome membrane [Evidence IDA] [PMID 12719473]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IDA] [PMID 12631735]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12719473]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16900101]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10973982]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0008144 - drug binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12631735]; GO_function: GO:0004672 - protein kinase activity [Evidence IMP] [PMID 10329624]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 12719473]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 8186460]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 17698581]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 14736892]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 9096347]; GO_process: GO:0031930 - mitochondria-nucleus signaling pathway [Evidence IMP] [PMID 11997479]; GO_process: GO:0010507 - negative regulation of autophagy [Evidence IGI] [PMID 9461583]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 8741837]; GO_process: GO:0001558 - regulation of cell growth [Evidence TAS] [PMID 11057898]; GO_process: GO:0001558 - regulation of cell growth [Evidence IMP] [PMID 12171921]; GO_process: GO:0090153 - regulation of sphingolipid biosynthetic process [Evidence IMP] [PMID 23363605]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP] [PMID 10198052]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 8741837]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IMP] [PMID 16900101]; GO_process: GO:0006413 - translational initiation [Evidence IMP] [PMID 8741837]; phosphatidylinositol kinase-related protein kinase TOR1 complement(2527846..2533908) Sugiyamaella lignohabitans 30034764 AWJ20_2812 CDS TOR2 NC_031674.1 2533995 2534660 R PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that regulates growth in response to nutrients and TORC2, a complex that regulates cell-cycle dependent polarization of the actin cytoskeleton; involved in meiosis; TOR2 has a paralog, TOR1, that arose from the whole genome duplication; GO_component: GO:0031931 - TORC1 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18723607]; GO_component: GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane [Evidence IDA] [PMID 12631735]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8846782]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10973982]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0004430 - 1-phosphatidylinositol 4-kinase activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0008144 - drug binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12631735]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 16055732]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 12719473]; GO_process: GO:0031929 - TOR signaling [Evidence IMP] [PMID 8186460]; GO_process: GO:0030037 - actin filament reorganization involved in cell cycle [Evidence TAS] [PMID 9038344]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IMP] [PMID 9475724]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 12408816]; GO_process: GO:0010507 - negative regulation of autophagy [Evidence IGI] [PMID 9461583]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:2001108 - positive regulation of Rho guanyl-nucleotide exchange factor activity [Evidence IGI,IMP] [PMID 9038344]; GO_process: GO:0035025 - positive regulation of Rho protein signal transduction [Evidence IGI,IMP] [PMID 9038344]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 14593073]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0051726 - regulation of cell cycle [Evidence TAS] [PMID 9475724]; GO_process: GO:0001558 - regulation of cell growth [Evidence TAS] [PMID 11057898]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP] [PMID 10198052]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 8186460]; phosphatidylinositol kinase-related protein kinase TOR2 complement(2533995..2534660) Sugiyamaella lignohabitans 30034765 AWJ20_2813 CDS TMA23 NC_031674.1 2536594 2537388 D Nucleolar protein implicated in ribosome biogenesis; deletion extends chronological lifespan; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17425675]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IGI] [PMID 17425675]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Tma23p 2536594..2537388 Sugiyamaella lignohabitans 30034766 AWJ20_2814 CDS SUP35 NC_031674.1 2539249 2541492 D Translation termination factor eRF3; has a role in mRNA deadenylation and decay; altered protein conformation creates the [PSI(+)] prion that alters translational fidelity and results in a nonsense suppressor phenotype; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23451152]; GO_component: GO:0018444 - translation release factor complex [Evidence IDA] [PMID 7556078]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003747 - translation release factor activity [Evidence IEA]; GO_function: GO:0003747 - translation release factor activity [Evidence IDA] [PMID 20947765]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IMP,IPI] [PMID 12923185]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IDA] [PMID 20947765]; translation termination factor GTPase eRF3 2539249..2541492 Sugiyamaella lignohabitans 30034767 AWJ20_2815 CDS RHO1 NC_031674.1 2541949 2542545 R GTP-binding protein of the rho subfamily of Ras-like proteins; involved in establishment of cell polarity; regulates protein kinase C (Pkc1p) and the cell wall synthesizing enzyme 1,3-beta-glucan synthase (Fks1p and Gsc2p); GO_component: GO:0000148 - 1,3-beta-D-glucan synthase complex [Evidence IDA] [PMID 8602515]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 1918143]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8195291]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8195291]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 8195291]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12660244]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 15596542]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11591390]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 7962098]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 15596542]; GO_process: GO:0031532 - actin cytoskeleton reorganization [Evidence IGI,IPI] [PMID 8947028]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI,IMP] [PMID 8195291]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 14593073]; GO_process: GO:0090037 - positive regulation of protein kinase C signaling [Evidence IDA,IMP] [PMID 8621575]; GO_process: GO:0090037 - positive regulation of protein kinase C signaling [Evidence IGI,IPI] [PMID 8846785]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 17302939]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IMP] [PMID 8602514]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IDA,IMP] [PMID 8602515]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IDA,IMP] [PMID 8662910]; GO_process: GO:0060178 - regulation of exocyst localization [Evidence IMP] [PMID 11283608]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IMP] [PMID 8621575]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 10893184]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 11598008]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IDA] [PMID 8621575]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IGI] [PMID 8846785]; Rho family GTPase RHO1 complement(2541949..2542545) Sugiyamaella lignohabitans 30034768 AWJ20_2816 CDS SLM2 NC_031674.1 2545686 2547560 D Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm1p; acts downstream of Mss4p in a pathway regulating actin cytoskeleton organization in response to stress; phosphorylated by the TORC2 complex; SLM2 has a paralog, SLM1, that arose from the whole genome duplication; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 15689497]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15372071]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15689497]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence TAS] [PMID 15372071]; GO_process: GO:0031929 - TOR signaling [Evidence IPI] [PMID 15689497]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 15372071]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 15689497]; GO_process: GO:0051017 - actin filament bundle assembly [Evidence IGI] [PMID 15689497]; GO_process: GO:0070941 - eisosome assembly [Evidence IGI] [PMID 21451250]; GO_process: GO:0016197 - endosomal transport [Evidence IGI] [PMID 21451250]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IPI] [PMID 15689497]; GO_process: GO:0001558 - regulation of cell growth [Evidence IGI,IPI] [PMID 15689497]; Slm2p 2545686..2547560 Sugiyamaella lignohabitans 30034769 AWJ20_2817 CDS AWJ20_2817 NC_031674.1 2547754 2549088 R uncharacterized protein complement(2547754..2549088) Sugiyamaella lignohabitans 30034770 AWJ20_2818 CDS AWJ20_2818 NC_031674.1 2549629 2549922 R acid phosphatase (predicted) complement(2549629..2549922) Sugiyamaella lignohabitans 30034771 AWJ20_2819 CDS BUD4 NC_031674.1 2550464 2552644 R Anillin-like protein involved in bud-site selection; required for the axial budding pattern; localizes with septins to the bud neck in mitosis and may constitute an axial landmark for the next round of budding; required for the formation and disassembly of the double septin ring structure, and generally for septin organization; in vivo substrate of Cdc28p/Clb2p; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 22553209]; GO_function: GO:0005525 - GTP binding [Evidence IDA,IMP] [PMID 22553209]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 22553209]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IMP] [PMID 22553209]; Bud4p complement(2550464..2552644) Sugiyamaella lignohabitans 30034772 AWJ20_2820 CDS AWJ20_2820 NC_031674.1 2554212 2555909 D uncharacterized protein 2554212..2555909 Sugiyamaella lignohabitans 30034774 AWJ20_2821 CDS AWJ20_2821 NC_031674.1 2556170 2556478 R secretory pathway protein Pga2 (predicted) complement(2556170..2556478) Sugiyamaella lignohabitans 30034775 AWJ20_2822 CDS AWJ20_2822 NC_031674.1 2556964 2558037 R uncharacterized protein complement(2556964..2558037) Sugiyamaella lignohabitans 30034776 AWJ20_2823 CDS YMC2 NC_031674.1 2559113 2559739 D Putative mitochondrial inner membrane transporter; proposed role in oleate metabolism and glutamate biosynthesis; member of the mitochondrial carrier (MCF) family; YMC2 has a paralog, YMC1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16140254]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005342 - organic acid transmembrane transporter activity [Evidence IGI,ISS] [PMID 16140254]; GO_process: GO:0006839 - mitochondrial transport [Evidence IGI] [PMID 16140254]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI,ISS] [PMID 16140254]; GO_process: GO:0006810 - transport [Evidence IEA]; Ymc2p 2559113..2559739 Sugiyamaella lignohabitans 30034777 AWJ20_2824 CDS AWJ20_2824 NC_031674.1 2559954 2560406 R uncharacterized protein complement(2559954..2560406) Sugiyamaella lignohabitans 30034778 AWJ20_2825 CDS YIA6 NC_031674.1 2561741 2562640 D Mitochondrial NAD+ transporter; involved in the transport of NAD+ into the mitochondria (see also YEA6); member of the mitochondrial carrier subfamily; disputed role as a pyruvate transporter; has putative mouse and human orthologs; YIA6 has a paralog, YEA6, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16291748]; GO_function: GO:0051724 - NAD transporter activity [Evidence IDA,IGI,IMP] [PMID 16291748]; GO_function: GO:0005477 - pyruvate secondary active transmembrane transporter activity [Evidence IMP] [PMID 12887330]; GO_function: GO:0005477 - pyruvate secondary active transmembrane transporter activity [Evidence IDA] [PMID 16291748]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 10930523]; GO_process: GO:0035352 - NAD transmembrane transport [Evidence IDA,IGI,IMP] [PMID 16291748]; GO_process: GO:0006850 - mitochondrial pyruvate transport [Evidence IMP] [PMID 12887330]; GO_process: GO:0006850 - mitochondrial pyruvate transport [Evidence IDA] [PMID 16291748]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 10930523]; Yia6p 2561741..2562640 Sugiyamaella lignohabitans 30034779 AWJ20_2826 CDS GPI14 NC_031674.1 2562843 2564390 R Glycosylphosphatidylinositol-alpha 1,4 mannosyltransferase I; involved in GPI anchor biosynthesis, requires Pbn1p for function; homolog of mammalian PIG-M; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence ISS] [PMID 11226175]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 11226175]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence ISS] [PMID 11226175]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 16134120]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 16134120]; Gpi14p complement(2562843..2564390) Sugiyamaella lignohabitans 30034780 AWJ20_2827 CDS ISC1 NC_031674.1 2565301 2566599 D Inositol phosphosphingolipid phospholipase C; mitochondrial membrane localized; hydrolyzes complex sphingolipids to produce ceramide; activates genes required for non-fermentable carbon source metabolism during the diauxic shift; activated by phosphatidylserine, cardiolipin, and phosphatidylglycerol; mediates Na+ and Li+ halotolerance; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14699160]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 17880915]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14699160]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0052712 - inositol phosphosphingolipid phospholipase activity [Evidence IDA] [PMID 11006294]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0046513 - ceramide biosynthetic process [Evidence IMP] [PMID 17880915]; GO_process: GO:0046513 - ceramide biosynthetic process [Evidence IMP] [PMID 23620586]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0009651 - response to salt stress [Evidence IMP] [PMID 12180980]; GO_process: GO:0030149 - sphingolipid catabolic process [Evidence IDA] [PMID 11006294]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA,IEA]; inositol phosphosphingolipid phospholipase 2565301..2566599 Sugiyamaella lignohabitans 30034781 AWJ20_2828 CDS AWJ20_2828 NC_031674.1 2568217 2572221 D uncharacterized protein 2568217..2572221 Sugiyamaella lignohabitans 30034782 AWJ20_2829 CDS UFD1 NC_031674.1 2572801 2573940 D Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase; polyubiquitin binding protein that assists in the dislocation of misfolded, ERAD substrates that are subsequently delivered to the proteasome for degradation; involved in regulated destruction of ER membrane proteins such as HMG-CoA reductase (Hmg1/2p) and cytoplasmic proteins (Fbp1p); involved in mobilizing membrane bound transaction factors by regulated Ub/proteasome-dependent processing (RUP); GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11598205]; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11733065]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11733065]; GO_function: GO:0031593 - polyubiquitin binding [Evidence IDA] [PMID 16004872]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 16004872]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11740563]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11813000]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11739805]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18812321]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11598205]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11733065]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20206597]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11740563]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11813000]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; polyubiquitin-binding protein UFD1 2572801..2573940 Sugiyamaella lignohabitans 30034783 AWJ20_2830 CDS AWJ20_2830 NC_031674.1 2574047 2574586 R uncharacterized protein complement(2574047..2574586) Sugiyamaella lignohabitans 30034785 AWJ20_2831 CDS AWJ20_2831 NC_031674.1 2574907 2576916 R uncharacterized protein complement(2574907..2576916) Sugiyamaella lignohabitans 30034786 AWJ20_2832 CDS ATG15 NC_031674.1 2578387 2580345 D triglyceride lipase ATG15 2578387..2580345 Sugiyamaella lignohabitans 30034787 AWJ20_2833 CDS DUG2 NC_031674.1 2580679 2583387 D Component of glutamine amidotransferase (GATase II); forms a complex with Dug3p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17179087]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016805 - dipeptidase activity [Evidence IEA]; GO_function: GO:0003840 - gamma-glutamyltransferase activity [Evidence IDA,IMP] [PMID 22277648]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008242 - omega peptidase activity [Evidence IGI] [PMID 17179087]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IGI] [PMID 17179087]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IMP] [PMID 17179087]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IDA,IMP] [PMID 22277648]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; glutamine amidotransferase subunit DUG2 2580679..2583387 Sugiyamaella lignohabitans 30034788 AWJ20_2834 CDS AWJ20_2834 NC_031674.1 2585005 2585889 D Pc12g03400 2585005..2585889 Sugiyamaella lignohabitans 30034789 AWJ20_2835 CDS AWJ20_2835 NC_031674.1 2586382 2587062 D uncharacterized protein 2586382..2587062 Sugiyamaella lignohabitans 30034790 AWJ20_2836 CDS SHE4 NC_031674.1 2591383 2593704 D Protein containing a UCS (UNC-45/CRO1/SHE4) domain; binds to myosin motor domains to regulate myosin function; involved in endocytosis, polarization of the actin cytoskeleton, and asymmetric mRNA localization; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8625407]; GO_function: GO:0017022 - myosin binding [Evidence IDA] [PMID 12725728]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence TAS] [PMID 10792032]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence IMP] [PMID 11553699]; GO_process: GO:0007533 - mating type switching [Evidence IMP] [PMID 8625407]; She4p 2591383..2593704 Sugiyamaella lignohabitans 30034791 AWJ20_2837 CDS AWJ20_2837 NC_031674.1 2593780 2594652 R aldolase, putative class II aldolase/adducin domain protein, putative complement(2593780..2594652) Sugiyamaella lignohabitans 30034792 AWJ20_2838 CDS CEM1 NC_031674.1 2595225 2596493 D Mitochondrial beta-keto-acyl synthase; possible role in fatty acid synthesis; required for mitochondrial respiration; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence ISA] [PMID 15668256]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence ISA] [PMID 15668256]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; fatty acid synthase CEM1 2595225..2596493 Sugiyamaella lignohabitans 30034793 AWJ20_2840 CDS YOX1 NC_031674.1 2599632 2600585 R Homeobox transcriptional repressor; binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycle-regulated; potential Cdc28p substrate; relocalizes from nucleus to cytoplasm upon DNA replication stress; YOX1 has a paralog, YHP1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12464632]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA,IMP] [PMID 12464633]; GO_function: GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding [Evidence IDA] [PMID 20385087]; GO_function: GO:0001191 - RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription [Evidence IPI] [PMID 12464633]; GO_function: GO:0001191 - RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription [Evidence IMP,IPI] [PMID 20385087]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0071930 - negative regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 12464633]; GO_process: GO:0071930 - negative regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 17314407]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Yox1p complement(2599632..2600585) Sugiyamaella lignohabitans 30034796 AWJ20_2841 CDS RCR2 NC_031674.1 2602156 2602749 D Vacuolar protein; presumably functions within the endosomal-vacuolar trafficking pathway, affecting events that determine whether plasma membrane proteins are degraded or routed to the plasma membrane; RCR2 has a paralog, RCR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17287526]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 15590673]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031982 - vesicle [Evidence IDA] [PMID 17287526]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 17287526]; Rcr2p 2602156..2602749 Sugiyamaella lignohabitans 30034797 AWJ20_2842 CDS NCL1 NC_031674.1 2604032 2606197 R S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase; methylates cytosine to m5C at several positions in tRNAs and intron-containing pre-tRNAs; increases proportion of tRNALeu(CAA) with m5C at wobble position in response to hydrogen peroxide, causing selective translation of mRNA from genes enriched in TTG codon; loss of NCL1 confers hypersensitivity to oxidative stress; similar to Nop2p and human proliferation associated nucleolar protein p120; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9767141]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016428 - tRNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO_function: GO:0016428 - tRNA (cytosine-5-)-methyltransferase activity [Evidence IDA] [PMID 10445884]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 17567576]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IMP] [PMID 22760636]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 10445884]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0002127 - wobble base cytosine methylation [Evidence IMP] [PMID 22760636]; Ncl1p complement(2604032..2606197) Sugiyamaella lignohabitans 30034798 AWJ20_2843 CDS PNO1 NC_031674.1 2606948 2607724 D Essential nucleolar protein required for pre-18S rRNA processing; interacts with Dim1p, an 18S rRNA dimethyltransferase, and also with Nob1p, which is involved in proteasome biogenesis; contains a KH domain; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10923024]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12502737]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA,IPI] [PMID 12502737]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12736301]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12736301]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP,IPI] [PMID 12502737]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Pno1p 2606948..2607724 Sugiyamaella lignohabitans 30034799 AWJ20_2844 CDS CDC73 NC_031674.1 2607938 2609224 R Component of the Paf1p complex; binds to and modulates the activity of RNA polymerases I and II; required for expression of certain genes, modification of some histones, and telomere maintenance; involved in transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay; protein abundance increases in response to DNA replication stress; human homologue, parafibromin, is a tumour suppressor linked to breast, renal and gastric cancers; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11884586]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 11927560]; GO_component: GO:0016593 - Cdc73/Paf1 complex [Evidence IPI] [PMID 9032243]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643076]; GO_component: GO:0035327 - transcriptionally active chromatin [Evidence IDA] [PMID 11983171]; GO_function: GO:1990269 - RNA polymerase II C-terminal domain phosphoserine binding [Evidence IDA] [PMID 22796944]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 11884586]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 9032243]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IPI] [PMID 11927560]; GO_function: GO:0001089 - TFIIF-class binding transcription factor activity [Evidence IMP,IPI] [PMID 9032243]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11983171]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 15149594]; GO_process: GO:0045910 - negative regulation of DNA recombination [Evidence IMP] [PMID 9891041]; GO_process: GO:2001255 - positive regulation of histone H3-K36 trimethylation [Evidence IMP] [PMID 17948059]; GO_process: GO:2001165 - positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues [Evidence IMP] [PMID 18469135]; GO_process: GO:2001209 - positive regulation of transcription elongation from RNA polymerase I promoter [Evidence IDA] [PMID 20299458]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 14710186]; GO_process: GO:0034402 - recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex [Evidence IMP] [PMID 18469135]; GO_process: GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination [Evidence IDA] [PMID 19531475]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0090262 - regulation of transcription-coupled nucleotide-excision repair [Evidence IGI] [PMID 21737840]; GO_process: GO:0006362 - transcription elongation from RNA polymerase I promoter [Evidence IMP] [PMID 19164765]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 11927560]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Cdc73p complement(2607938..2609224) Sugiyamaella lignohabitans 30034800 AWJ20_2845 CDS YPT52 NC_031674.1 2609823 2610470 R Endosomal Rab family GTPase; required for vacuolar protein sorting, endocytosis and multivesicular body (MVB) biogenesis and sorting; required for localization of the CORVET complex to endosomes; involved in autophagy and ionic stress tolerance; similar to Vps21p and Ypt53p; mammalian Rab5 homolog; protein abundance increases in response to DNA replication stress; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005770 - late endosome [Evidence IMP] [PMID 11872141]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 8163546]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 22748138]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI] [PMID 23612966]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8163546]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 22748138]; GO_process: GO:0036258 - multivesicular body assembly [Evidence IGI] [PMID 22748138]; GO_process: GO:0036010 - protein localization to endosome [Evidence IGI] [PMID 23264632]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 8163546]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Rab family GTPase YPT52 complement(2609823..2610470) Sugiyamaella lignohabitans 30034801 AWJ20_2846 CDS AWJ20_2846 NC_031674.1 2612894 2615122 D uncharacterized protein 2612894..2615122 Sugiyamaella lignohabitans 30034802 AWJ20_2847 CDS MST1 NC_031674.1 2615225 2616793 D Mitochondrial threonyl-tRNA synthetase; aminoacylates both the canonical threonine tRNA tT(UGU)Q1 and the unusual threonine tRNA tT(UAG)Q2 in vitro; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 2999113]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence IDA] [PMID 21321019]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence IMP,ISA] [PMID 2999113]; GO_process: GO:0070159 - mitochondrial threonyl-tRNA aminoacylation [Evidence IDA] [PMID 21321019]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; threonine--tRNA ligase MST1 2615225..2616793 Sugiyamaella lignohabitans 30034803 AWJ20_2848 CDS ATG17 NC_031674.1 2617063 2618511 R protein kinase regulatory subunit ATG17 complement(2617063..2618511) Sugiyamaella lignohabitans 30034804 AWJ20_2849 CDS ELG1 NC_031674.1 2619905 2622874 D Subunit of an alternative replication factor C complex; important for DNA replication and genome integrity; suppresses spontaneous DNA damage; involved in homologous recombination-mediated repair and telomere homeostasis; required for PCNA (Pol30p) unloading during DNA replication; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12909721]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 18482875]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12912927]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 17170004]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 19430531]; GO_process: GO:0045910 - negative regulation of DNA recombination [Evidence NAS] [PMID 11779788]; GO_process: GO:0010526 - negative regulation of transposition, RNA-mediated [Evidence IMP] [PMID 11779788]; GO_process: GO:0000723 - telomere maintenance [Evidence TAS] [PMID 13678589]; Elg1p 2619905..2622874 Sugiyamaella lignohabitans 30034805 AWJ20_2850 CDS SPT3 NC_031674.1 2623026 2623625 R Subunit of the SAGA and SAGA-like transcriptional regulatory complexes; interacts with Spt15p to activate transcription of some RNA polymerase II-dependent genes, also functions to inhibit transcription at some promoters; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9224714]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IDA] [PMID 11485989]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IMP] [PMID 9858534]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IDA] [PMID 12072450]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IDA] [PMID 12072450]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12370284]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; transcriptional regulator SPT3 complement(2623026..2623625) Sugiyamaella lignohabitans 30034807 AWJ20_2851 CDS AWJ20_2851 NC_031674.1 2624301 2626889 D RNA-binding splicing factor 2624301..2626889 Sugiyamaella lignohabitans 30034808 AWJ20_2852 CDS MIA40 NC_031674.1 2627160 2627906 R Mitochondrial oxidoreductase; involved in mitochondrial intermembrane space import; component of MIA pathway which mediates import and oxidative folding of substrates including small proteins containing twin cysteine motifs; acts in concert with Erv1p, which oxidizes the cysteine residues of Mia40p to comprise a disulfide relay system that catalyzes import; also mediates folding of Atp23p via a chaperone-like activity; forms a dimer that binds iron-sulfur cluster in vitro; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 15364952]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 15620710]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 15359280]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14690591]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IDA] [PMID 23834247]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IMP] [PMID 22990235]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 22990235]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP] [PMID 15359280]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP] [PMID 15364952]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IPI] [PMID 15989955]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IMP] [PMID 17336303]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mia40p complement(2627160..2627906) Sugiyamaella lignohabitans 30034809 AWJ20_2853 CDS THI80 NC_031674.1 2628848 2629384 D Thiamine pyrophosphokinase; phosphorylates thiamine to produce the coenzyme thiamine pyrophosphate (thiamine diphosphate); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004788 - thiamine diphosphokinase activity [Evidence IEA,IEA]; GO_function: GO:0004788 - thiamine diphosphokinase activity [Evidence IDA] [PMID 18652651]; GO_function: GO:0004788 - thiamine diphosphokinase activity [Evidence IDA,IMP] [PMID 8394343]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009229 - thiamine diphosphate biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009229 - thiamine diphosphate biosynthetic process [Evidence IMP] [PMID 8394343]; GO_process: GO:0009229 - thiamine diphosphate biosynthetic process [Evidence TAS] [PMID 9655908]; thiamine diphosphokinase 2628848..2629384 Sugiyamaella lignohabitans 30034810 AWJ20_2855 CDS SEN34 NC_031674.1 2630084 2631268 R tRNA splicing endonuclease subunit SEN34 complement(2630084..2631268) Sugiyamaella lignohabitans 30034812 AWJ20_2856 CDS AWJ20_2856 NC_031674.1 2631501 2632130 R uncharacterized protein complement(2631501..2632130) Sugiyamaella lignohabitans 30034813 AWJ20_2857 CDS RPL4A NC_031674.1 2632981 2634078 R Ribosomal 60S subunit protein L4A; N-terminally acetylated; homologous to mammalian ribosomal protein L4 and bacterial L4; RPL4A has a paralog, RPL4B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L4A complement(2632981..2634078) Sugiyamaella lignohabitans 30034814 AWJ20_2858 CDS GLC3 NC_031674.1 2635430 2637511 D Glycogen branching enzyme, involved in glycogen accumulation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IEA,IEA]; GO_function: GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IGI,IMP] [PMID 1729600]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0043169 - cation binding [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IMP] [PMID 1729600]; 1,4-alpha-glucan branching enzyme 2635430..2637511 Sugiyamaella lignohabitans 30034815 AWJ20_2859 CDS FUM1 NC_031674.1 2637687 2639168 R Fumarase; converts fumaric acid to L-malic acid in the TCA cycle; cytosolic and mitochondrial distribution determined by the N-terminal targeting sequence, protein conformation, and status of glyoxylate shunt; phosphorylated in mitochondria; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11585823]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 11585823]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045239 - tricarboxylic acid cycle enzyme complex [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004333 - fumarate hydratase activity [Evidence IEA,IEA]; GO_function: GO:0004333 - fumarate hydratase activity [Evidence IDA] [PMID 3040736]; GO_function: GO:0016829 - lyase activity [Evidence IEA,IEA]; GO_process: GO:0006106 - fumarate metabolic process [Evidence IEA]; GO_process: GO:0006106 - fumarate metabolic process [Evidence IMP] [PMID 1587456]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IMP] [PMID 1587456]; fumarase FUM1 complement(2637687..2639168) Sugiyamaella lignohabitans 30034816 AWJ20_2860 CDS RRP7 NC_031674.1 2639783 2640553 R Essential protein involved in rRNA processing and ribosome biogenesis; protein abundance increases in response to DNA replication stress; GO_component: GO:0032545 - CURI complex [Evidence IDA] [PMID 17452446]; GO_component: GO:0034456 - UTP-C complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IGI,IMP] [PMID 9271380]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IGI,IMP] [PMID 9271380]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp7p complement(2639783..2640553) Sugiyamaella lignohabitans 30034818 AWJ20_2861 CDS RKM1 NC_031674.1 2640771 2642318 D SET-domain lysine-N-methyltransferase; catalyzes the formation of dimethyllysine residues on the large ribsomal subunit proteins L23a (Rpl23Ap and Rpl23Bp) and L18 (Rps18Ap and Rps18Bp); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016279 - protein-lysine N-methyltransferase activity [Evidence IDA,IMP] [PMID 16096273]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0018027 - peptidyl-lysine dimethylation [Evidence IDA,IMP] [PMID 16096273]; Rkm1p 2640771..2642318 Sugiyamaella lignohabitans 30034819 AWJ20_2862 CDS AWJ20_2862 NC_031674.1 2643145 2643660 D N-acetyltransferase (predicted) 2643145..2643660 Sugiyamaella lignohabitans 30034820 AWJ20_2863 CDS TYW1 NC_031674.1 2646215 2648395 D Iron-sulfur protein required for synthesis of Wybutosine modified tRNA; Wybutosine is a modified guanosine found at the 3'-position adjacent to the anticodon of phenylalanine tRNA which supports reading frame maintenance by stabilizing codon-anticodon interactions; induction by Yap5p in response to iron provides protection from high iron toxicity; overexpression results in increased cellular iron; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 16162496]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 16642040]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 17150819]; Tyw1p 2646215..2648395 Sugiyamaella lignohabitans 30034821 AWJ20_2864 CDS AWJ20_2864 NC_031674.1 2648605 2650059 D uncharacterized protein 2648605..2650059 Sugiyamaella lignohabitans 30034822 AWJ20_2865 CDS ALG2 NC_031674.1 2650400 2651764 D Mannosyltransferase in the N-linked glycosylation pathway; catalyzes two consecutive steps in the N-linked glycosylation pathway; alg2 mutants exhibit temperature-sensitive growth and abnormal accumulation of the lipid-linked oligosaccharide Man2GlcNAc2-PP-Dol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IC] [PMID 16878994]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004378 - GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity [Evidence IEA]; GO_function: GO:0004378 - GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity [Evidence IDA] [PMID 16878994]; GO_function: GO:0033164 - glycolipid 6-alpha-mannosyltransferase activity [Evidence IDA] [PMID 16878994]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006490 - oligosaccharide-lipid intermediate biosynthetic process [Evidence IDA] [PMID 16878994]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GDP-Man:Man(1)GlcNAc(2)-PP-dolichol alpha-1,3-mannosyltransferase 2650400..2651764 Sugiyamaella lignohabitans 30034823 AWJ20_2866 CDS SGF73 NC_031674.1 2651909 2653291 R SAGA complex subunit; has a role in anchoring the deubiquitination module into SAGA and SLIK complexes; involved in preinitiation complex assembly at promoters; relocalizes to the cytosol in response to hypoxia; human ortholog ataxin-7 is associated with spinocerebellar ataxia diseases; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; GO_component: GO:0071819 - DUBm complex [Evidence IDA] [PMID 20395473]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 12052880]; GO_component: GO:0000124 - SAGA complex [Evidence IPI] [PMID 15932941]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 17090597]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IPI] [PMID 15932941]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 18488019]; GO_function: GO:0008047 - enzyme activator activity [Evidence IMP] [PMID 20434206]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 15932941]; GO_function: GO:0005198 - structural molecule activity [Evidence IGI,IMP] [PMID 15932941]; GO_process: GO:0016568 - chromatin modification [Evidence IMP] [PMID 15932941]; GO_process: GO:0016568 - chromatin modification [Evidence IMP] [PMID 17090597]; GO_process: GO:0016573 - histone acetylation [Evidence IPI] [PMID 12052880]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 15932941]; GO_process: GO:0016578 - histone deubiquitination [Evidence IMP] [PMID 19226466]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 18488019]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 17090597]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 19226466]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sgf73p complement(2651909..2653291) Sugiyamaella lignohabitans 30034824 AWJ20_2867 CDS CAF16 NC_031674.1 2654524 2655063 D Part of evolutionarily-conserved CCR4-NOT regulatory complex; contains single ABC-type ATPase domain but no transmembrane domain; interacts with several subunits of Mediator; GO_component: GO:0030014 - CCR4-NOT complex [Evidence IDA] [PMID 11113136]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 10581358]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP,IPI] [PMID 11113136]; putative ATP-binding cassette family ATPase CAF16 2654524..2655063 Sugiyamaella lignohabitans 30034825 AWJ20_2868 CDS ERG3 NC_031674.1 2656315 2657508 D C-5 sterol desaturase; glycoprotein that catalyzes the introduction of a C-5(6) double bond into episterol, a precursor in ergosterol biosynthesis; mutants are viable, but cannot grow on non-fermentable carbon sources; substrate of the HRD ubiquitin ligase; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 21737688]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000248 - C-5 sterol desaturase activity [Evidence IDA] [PMID 34600]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 1864507]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; C-5 sterol desaturase 2656315..2657508 Sugiyamaella lignohabitans 30034826 AWJ20_2869 CDS AWJ20_2869 NC_031674.1 2658585 2659685 R uncharacterized protein complement(2658585..2659685) Sugiyamaella lignohabitans 30034827 AWJ20_2870 CDS UFD4 NC_031674.1 2660669 2664526 R Ubiquitin-protein ligase (E3); interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 10688918]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IBA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence TAS] [PMID 8982460]; GO_process: GO:0010994 - free ubiquitin chain polymerization [Evidence IMP] [PMID 22497224]; GO_process: GO:0006513 - protein monoubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0000209 - protein polyubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IBA]; putative ubiquitin-protein ligase UFD4 complement(2660669..2664526) Sugiyamaella lignohabitans 30034829 AWJ20_2871 CDS UFD4 NC_031674.1 2664827 2665891 R Ubiquitin-protein ligase (E3); interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 10688918]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IBA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence TAS] [PMID 8982460]; GO_process: GO:0010994 - free ubiquitin chain polymerization [Evidence IMP] [PMID 22497224]; GO_process: GO:0006513 - protein monoubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0000209 - protein polyubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IBA]; putative ubiquitin-protein ligase UFD4 complement(2664827..2665891) Sugiyamaella lignohabitans 30034830 AWJ20_2872 CDS TEA1 NC_031674.1 2668224 2669114 R Ty1 enhancer activator involved in Ty enhancer-mediated transcription; required for full levels of Ty enhancer-mediated transcription; C6 zinc cluster DNA-binding protein; GO_component: GO:0051285 - cell cortex of cell tip [Evidence IDA] [PMID 23673619]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IGI,IPI] [PMID 8524314]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 8524314]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IGI,IPI] [PMID 8524314]; Tea1p complement(2668224..2669114) Sugiyamaella lignohabitans 30034831 AWJ20_2873 CDS MCH5 NC_031674.1 2670151 2670933 D Plasma membrane riboflavin transporter; facilitates the uptake of vitamin B2; required for FAD-dependent processes; sequence similarity to mammalian monocarboxylate permeases, however mutants are not deficient in monocarboxylate transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16204239]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0032217 - riboflavin transporter activity [Evidence IGI] [PMID 16204239]; GO_process: GO:0032218 - riboflavin transport [Evidence IGI] [PMID 16204239]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mch5p 2670151..2670933 Sugiyamaella lignohabitans 30034832 AWJ20_2874 CDS RIO2 NC_031674.1 2671452 2672654 D protein kinase RIO2 2671452..2672654 Sugiyamaella lignohabitans 30034833 AWJ20_2875 CDS AWJ20_2875 NC_031674.1 2672930 2673322 D uncharacterized protein 2672930..2673322 Sugiyamaella lignohabitans 30034834 AWJ20_2876 CDS AWJ20_2876 NC_031674.1 2674300 2674806 R uncharacterized protein complement(2674300..2674806) Sugiyamaella lignohabitans 30034835 AWJ20_2877 CDS NHA1 NC_031674.1 2676271 2678898 D Na+/H+ antiporter; involved in sodium and potassium efflux through the plasma membrane; required for alkali cation tolerance at acidic pH; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 17176761]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19254924]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15950597]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9802016]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015491 - cation:cation antiporter activity [Evidence ISS] [PMID 8654575]; GO_function: GO:0015491 - cation:cation antiporter activity [Evidence IMP] [PMID 9802016]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IEA]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IDA] [PMID 15950597]; GO_function: GO:0015299 - solute:proton antiporter activity [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0030004 - cellular monovalent inorganic cation homeostasis [Evidence IMP] [PMID 9802016]; GO_process: GO:0030007 - cellular potassium ion homeostasis [Evidence IMP] [PMID 16402204]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 16402204]; GO_process: GO:0035725 - sodium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006814 - sodium ion transport [Evidence IEA,IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nha1p 2676271..2678898 Sugiyamaella lignohabitans 30034836 AWJ20_2878 CDS DIP2 NC_031674.1 2679126 2681966 R Nucleolar protein; specifically associated with the U3 snoRNA, part of the large ribonucleoprotein complex known as the small subunit (SSU) processome, required for 18S rRNA biogenesis, part of the active pre-rRNA processing complex; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Dip2p complement(2679126..2681966) Sugiyamaella lignohabitans 30034837 AWJ20_2879 CDS AWJ20_2879 NC_031674.1 2680399 2680779 D L3118 2680399..2680779 Sugiyamaella lignohabitans 30034838 AWJ20_2880 CDS ARC40 NC_031674.1 2684641 2685741 R Subunit of the ARP2/3 complex; ARP2/3 is required for the motility and integrity of cortical actin patches; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA] [PMID 10377407]; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA] [PMID 15485833]; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 10377407]; GO_process: GO:0045010 - actin nucleation [Evidence IDA] [PMID 15485833]; GO_process: GO:0030833 - regulation of actin filament polymerization [Evidence IEA]; Arc40p complement(2684641..2685741) Sugiyamaella lignohabitans 30034840 AWJ20_2881 CDS ADE13 NC_031674.1 2686676 2688124 D Adenylosuccinate lyase; catalyzes two steps in the 'de novo' purine nucleotide biosynthetic pathway; expression is repressed by adenine and activated by Bas1p and Pho2p; mutations in human ortholog ADSL cause adenylosuccinase deficiency; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0070626 - (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate AMP-lyase (fumarate-forming) activity [Evidence IEA]; GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA,IEA]; GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IMP] [PMID 5807803]; GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IMP] [PMID 7896125]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0044208 - 'de novo' AMP biosynthetic process [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IMP] [PMID 5807803]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IGI] [PMID 7896125]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 5807803]; GO_process: GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]; adenylosuccinase ADE13 2686676..2688124 Sugiyamaella lignohabitans 30034841 AWJ20_2882 CDS MED7 NC_031674.1 2688346 2689284 R Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16452140]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16452140]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Med7p complement(2688346..2689284) Sugiyamaella lignohabitans 30034842 AWJ20_2883 CDS AWJ20_2883 NC_031674.1 2692676 2693362 R uncharacterized protein complement(2692676..2693362) Sugiyamaella lignohabitans 30034843 AWJ20_2884 CDS ARP3 NC_031674.1 2700160 2701137 D Essential component of the Arp2/3 complex; Arp2/3 is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IEA]; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA] [PMID 10377407]; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA,IMP] [PMID 15657399]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0034314 - Arp2/3 complex-mediated actin nucleation [Evidence IEA]; GO_process: GO:0034314 - Arp2/3 complex-mediated actin nucleation [Evidence IMP] [PMID 16862144]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 10377407]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence TAS] [PMID 11248049]; GO_process: GO:0030833 - regulation of actin filament polymerization [Evidence IEA]; actin-related protein 3 2700160..2701137 Sugiyamaella lignohabitans 30034844 AWJ20_2885 CDS IMG2 NC_031674.1 2701356 2701838 R Mitochondrial ribosomal protein of the large subunit; conserved in metazoa, with similarity to human mitochondrial ribosomal protein MRPL49; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein IMG2 complement(2701356..2701838) Sugiyamaella lignohabitans 30034845 AWJ20_2886 CDS DPL1 NC_031674.1 2703375 2704814 D Dihydrosphingosine phosphate lyase; regulates intracellular levels of sphingolipid long-chain base phosphates (LCBPs), degrades phosphorylated long chain bases, prefers C16 dihydrosphingosine-l-phosphate as a substrate; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 18487605]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0097038 - perinuclear endoplasmic reticulum [Evidence IDA] [PMID 18487605]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008117 - sphinganine-1-phosphate aldolase activity [Evidence IEA]; GO_function: GO:0008117 - sphinganine-1-phosphate aldolase activity [Evidence IDA] [PMID 9334171]; GO_process: GO:0019722 - calcium-mediated signaling [Evidence IMP] [PMID 11278643]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0009267 - cellular response to starvation [Evidence IMP] [PMID 10329480]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IGI,IMP] [PMID 9334171]; sphinganine-1-phosphate aldolase DPL1 2703375..2704814 Sugiyamaella lignohabitans 30034846 AWJ20_2887 CDS AWJ20_2887 NC_031674.1 2705699 2707375 D uncharacterized protein 2705699..2707375 Sugiyamaella lignohabitans 30034847 AWJ20_2888 CDS BOP3 NC_031674.1 2709688 2712066 D hypothetical protein; potential Cdc28p substrate; overproduction confers resistance to methylmercury; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0071406 - cellular response to methylmercury [Evidence IGI,IMP] [PMID 15796894]; Bop3p 2709688..2712066 Sugiyamaella lignohabitans 30034848 AWJ20_2889 CDS FRE8 NC_031674.1 2712230 2713363 R Protein with sequence similarity to iron/copper reductases; involved in iron homeostasis; deletion mutant has iron deficiency/accumulation growth defects; expression increased in the absence of copper-responsive transcription factor Mac1p; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 10341420]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016722 - oxidoreductase activity, oxidizing metal ions [Evidence ISS] [PMID 10341420]; GO_function: GO:0016722 - oxidoreductase activity, oxidizing metal ions [Evidence IMP] [PMID 14534306]; GO_process: GO:0006875 - cellular metal ion homeostasis [Evidence IMP] [PMID 14534306]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Fre8p complement(2712230..2713363) Sugiyamaella lignohabitans 30034849 AWJ20_2890 CDS ISN1 NC_031674.1 2717483 2718058 D Inosine 5'-monophosphate (IMP)-specific 5'-nucleotidase; catalyzes the breakdown of IMP to inosine; responsible for production of nicotinamide riboside and nicotinic acid riboside; expression positively regulated by nicotinic acid and glucose availability; does not show similarity to known 5'-nucleotidases from other organisms; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0050483 - IMP 5'-nucleotidase activity [Evidence IDA] [PMID 12735798]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0006190 - inosine salvage [Evidence IMP] [PMID 12735798]; GO_process: GO:0071590 - nicotinamide riboside biosynthetic process [Evidence IGI,IMP] [PMID 19846558]; GO_process: GO:0071592 - nicotinic acid riboside biosynthetic process [Evidence IGI,IMP] [PMID 19846558]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IEA,IEA]; IMP 5'-nucleotidase 2717483..2718058 Sugiyamaella lignohabitans 30034851 AWJ20_2891 CDS CSM3 NC_031674.1 2718207 2719151 R Replication fork associated factor; required for stable replication fork pausing; component of the DNA replication checkpoint pathway; required for accurate chromosome segregation during meiosis; forms nuclear foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI,IMP] [PMID 16219777]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IGI] [PMID 14764870]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA,IEA]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 19730685]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IMP] [PMID 18321795]; GO_process: GO:0045132 - meiotic chromosome segregation [Evidence IMP] [PMID 11470404]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 14742714]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 17483413]; GO_process: GO:0008156 - negative regulation of DNA replication [Evidence IEA]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 16103218]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 16418273]; GO_process: GO:0048478 - replication fork protection [Evidence IEA]; GO_process: GO:0048478 - replication fork protection [Evidence IMP] [PMID 16418273]; Csm3p complement(2718207..2719151) Sugiyamaella lignohabitans 30034852 AWJ20_2892 CDS PPE1 NC_031674.1 2719378 2720622 D Protein with carboxyl methyl esterase activity; may have a role in demethylation of the phosphoprotein phosphatase catalytic subunit; also identified as a small subunit mitochondrial ribosomal protein; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_function: GO:0052689 - carboxylic ester hydrolase activity [Evidence IEA]; GO_function: GO:0052689 - carboxylic ester hydrolase activity [Evidence IMP] [PMID 11060018]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0006464 - cellular protein modification process [Evidence IGI] [PMID 11060018]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006482 - protein demethylation [Evidence IEA]; carboxylesterase-mitochondrial 37S ribosomal protein YmS2 2719378..2720622 Sugiyamaella lignohabitans 30034853 AWJ20_2893 CDS QNS1 NC_031674.1 2720866 2723028 R Glutamine-dependent NAD(+) synthetase; essential for the formation of NAD(+) from nicotinic acid adenine dinucleotide; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12898714]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12898714]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA,IEA]; GO_function: GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence ISS] [PMID 11380987]; GO_function: GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IDA,IMP] [PMID 12771147]; GO_function: GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IDA,IMP] [PMID 12898714]; GO_function: GO:0004359 - glutaminase activity [Evidence IDA,IMP] [PMID 12771147]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IDA,IMP] [PMID 12771147]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IDA,IMP] [PMID 12898714]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; glutamine-dependent NAD(+) synthetase complement(2720866..2723028) Sugiyamaella lignohabitans 30034854 AWJ20_2894 CDS PRO1 NC_031674.1 2723690 2724901 D Gamma-glutamyl kinase; catalyzes the first step in proline biosynthesis; PRO1 has a paralog, YHR033W, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004349 - glutamate 5-kinase activity [Evidence IEA,IEA]; GO_function: GO:0004349 - glutamate 5-kinase activity [Evidence IDA] [PMID 12513997]; GO_function: GO:0004349 - glutamate 5-kinase activity [Evidence ISS] [PMID 1350780]; GO_function: GO:0004349 - glutamate 5-kinase activity [Evidence IGI,IMP] [PMID 2824433]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0055129 - L-proline biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IDA] [PMID 12513997]; glutamate 5-kinase 2723690..2724901 Sugiyamaella lignohabitans 30034855 AWJ20_2895 CDS NCS2 NC_031674.1 2725081 2726298 R Protein required for uridine thiolation of Lys(UUU) and Glu(UUC) tRNAs; required for the thiolation of uridine at the wobble position of Lys(UUU) and Glu(UUC) tRNAs; has a role in urmylation and in invasive and pseudohyphal growth; inhibits replication of Brome mosaic virus in S. cerevisiae; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18664566]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 14551258]; GO_process: GO:0032447 - protein urmylation [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IMP] [PMID 14551258]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 14551258]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0034227 - tRNA thio-modification [Evidence IEA,IEA]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 17018299]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 18664566]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 18755837]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19145231]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19151091]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IEA,IEA]; Ncs2p complement(2725081..2726298) Sugiyamaella lignohabitans 30034856 AWJ20_2896 CDS PIH1 NC_031674.1 2726546 2727511 R Component of the conserved R2TP complex (Rvb1-Rvb2-Tah1-Pih1); R2TP complex interacts with Hsp90 (Hsp82p and Hsc82p) to mediate assembly large protein complexes such as box C/D snoRNPs and RNA polymerase II; GO_component: GO:0097255 - R2TP complex [Evidence IDA] [PMID 15766533]; GO_component: GO:0097255 - R2TP complex [Evidence IPI] [PMID 18268103]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005732 - small nucleolar ribonucleoprotein complex [Evidence IPI] [PMID 15670595]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000492 - box C/D snoRNP assembly [Evidence IMP] [PMID 18268103]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IGI,IMP,IPI] [PMID 15766533]; GO_process: GO:0006364 - rRNA processing [Evidence IGI,IMP,IPI] [PMID 15670595]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; Pih1p complement(2726546..2727511) Sugiyamaella lignohabitans 30034857 AWJ20_2897 CDS AWJ20_2897 NC_031674.1 2728125 2728577 D uncharacterized protein 2728125..2728577 Sugiyamaella lignohabitans 30034858 AWJ20_2898 CDS CPR1 NC_031674.1 2728639 2730582 R Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A; N-terminally propionylated in vivo; protein abundance increases in response to DNA replication stress; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000118 - histone deacetylase complex [Evidence IPI] [PMID 15643056]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643056]; GO_function: GO:0016018 - cyclosporin A binding [Evidence IMP] [PMID 7515500]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0042277 - peptide binding [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 2687115]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 15643056]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IMP] [PMID 11641409]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IMP] [PMID 12242280]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0045836 - positive regulation of meiosis [Evidence IGI,IMP] [PMID 15643056]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; peptidylprolyl isomerase CPR1 complement(2728639..2730582) Sugiyamaella lignohabitans 30034859 AWJ20_2899 CDS AWJ20_2899 NC_031674.1 2731402 2732190 D uncharacterized protein 2731402..2732190 Sugiyamaella lignohabitans 30034860 AWJ20_2900 CDS TOS3 NC_031674.1 2732269 2734554 R serine/threonine protein kinase TOS3 complement(2732269..2734554) Sugiyamaella lignohabitans 30034863 AWJ20_2901 CDS MDH1 NC_031674.1 2735817 2736824 R Mitochondrial malate dehydrogenase; catalyzes interconversion of malate and oxaloacetate; involved in the tricarboxylic acid (TCA) cycle; phosphorylated; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 9774331]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 10777592]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_function: GO:0030060 - L-malate dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0030060 - L-malate dehydrogenase activity [Evidence IMP] [PMID 10777592]; GO_function: GO:0030060 - L-malate dehydrogenase activity [Evidence IDA] [PMID 1898005]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016615 - malate dehydrogenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 3312168]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 18381895]; GO_process: GO:0006108 - malate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 18381895]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IMP] [PMID 3312168]; malate dehydrogenase MDH1 complement(2735817..2736824) Sugiyamaella lignohabitans 30034864 AWJ20_2902 CDS AWJ20_2902 NC_031674.1 2736442 2736687 D uncharacterized protein 2736442..2736687 Sugiyamaella lignohabitans 30034865 AWJ20_2903 CDS AWJ20_2903 NC_031674.1 2740707 2742203 R uncharacterized protein complement(2740707..2742203) Sugiyamaella lignohabitans 30034866 AWJ20_2904 CDS AWJ20_2904 NC_031674.1 2742982 2744490 R uncharacterized protein complement(2742982..2744490) Sugiyamaella lignohabitans 30034867 AWJ20_2905 CDS CCC2 NC_031674.1 2744911 2747919 R Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0012510 - trans-Golgi network transport vesicle membrane [Evidence IDA] [PMID 9325307]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IDA] [PMID 15078884]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IMP] [PMID 7708696]; GO_function: GO:0005507 - copper ion binding [Evidence IEA]; GO_function: GO:0005507 - copper ion binding [Evidence IDA] [PMID 17961510]; GO_function: GO:0043682 - copper-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 7708696]; GO_process: GO:0060003 - copper ion export [Evidence IMP] [PMID 7708696]; GO_process: GO:0006825 - copper ion transport [Evidence IEA,IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 7708696]; GO_process: GO:0006810 - transport [Evidence IEA]; Cu(2+)-transporting P-type ATPase CCC2 complement(2744911..2747919) Sugiyamaella lignohabitans 30034868 AWJ20_2906 CDS VAC8 NC_031674.1 2748871 2750556 R Phosphorylated and palmitoylated vacuolar membrane protein; interacts with Atg13p, required for the cytoplasm-to-vacuole targeting (Cvt) pathway; interacts with Nvj1p to form nucleus-vacuole junctions; GO_component: GO:0071563 - Myo2p-Vac17p-Vac8p transport complex [Evidence IDA,IPI] [PMID 12529432]; GO_component: GO:0071563 - Myo2p-Vac17p-Vac8p transport complex [Evidence IPI] [PMID 12594460]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 16301533]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9490720]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9664035]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9739084]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0071561 - nucleus-vacuole junction [Evidence IDA,IPI] [PMID 10888680]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0043495 - protein anchor [Evidence IMP,IPI] [PMID 10888680]; GO_function: GO:0043495 - protein anchor [Evidence IMP,IPI] [PMID 12594460]; GO_process: GO:0071255 - CVT vesicle assembly [Evidence IMP] [PMID 10837477]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 15901835]; GO_process: GO:0071562 - nucleus-vacuole junction assembly [Evidence IMP] [PMID 10888680]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 12529432]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 11441010]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 16301533]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 16301533]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 8885233]; protein anchor VAC8 complement(2748871..2750556) Sugiyamaella lignohabitans 30034869 AWJ20_2907 CDS EDC3 NC_031674.1 2754890 2756626 R Non-essential conserved protein with a role in mRNA decapping; specifically affects the function of the decapping enzyme Dcp1p; mediates decay of the RPS28B mRNA via binding to both Rps28Bp (or Rps28Ap) and the RPS28B mRNA; mediates decay of the YRA1 mRNA by a different, translation-independent mechanism; localizes to cytoplasmic mRNA processing bodies; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23706738]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 15020463]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23706738]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 24492965]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IMP] [PMID 17984320]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IGI,IMP] [PMID 18981231]; GO_process: GO:0031087 - deadenylation-independent decapping of nuclear-transcribed mRNA [Evidence IMP] [PMID 15225544]; GO_process: GO:1900153 - positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IMP] [PMID 24492965]; Edc3p complement(2754890..2756626) Sugiyamaella lignohabitans 30034870 AWJ20_2908 CDS AWJ20_2908 NC_031674.1 2757442 2759508 R uncharacterized protein complement(2757442..2759508) Sugiyamaella lignohabitans 30034871 AWJ20_2909 CDS AWJ20_2909 NC_031674.1 2768751 2769980 D uncharacterized protein 2768751..2769980 Sugiyamaella lignohabitans 30034872 AWJ20_2910 CDS YPS3 NC_031674.1 2770452 2771756 D Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 2770452..2771756 Sugiyamaella lignohabitans 30034874 AWJ20_2911 CDS CHK1 NC_031674.1 2771850 2773145 R serine/threonine protein kinase CHK1 complement(2771850..2773145) Sugiyamaella lignohabitans 30034875 AWJ20_2912 CDS AWJ20_2912 NC_031674.1 2773675 2775024 R uncharacterized protein complement(2773675..2775024) Sugiyamaella lignohabitans 30034876 AWJ20_2913 CDS PDA1 NC_031674.1 2776052 2777512 R E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex; catalyzes the direct oxidative decarboxylation of pyruvate to acetyl-CoA; phosphorylated; regulated by glucose; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA] [PMID 2007123]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 7589446]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA,IEA]; GO_function: GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IMP] [PMID 11589696]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA] [PMID 7947791]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 24603354]; pyruvate dehydrogenase (acetyl-transferring) subunit E1 alpha complement(2776052..2777512) Sugiyamaella lignohabitans 30034877 AWJ20_2914 CDS PAH1 NC_031674.1 2781619 2783778 D Mg2+-dependent phosphatidate (PA) phosphatase; dephosphorylates PA to yield diacylglycerol; responsible for de novo lipid synthesis and formation of lipid droplets; phosphorylation by Pho80p-Pho85p decreases catalytic activity and alters Pah1p localization and abundance; phosphorylation by protein kinase A decreases catalytic efficiency; dephosphorylation by Nem1p-Spo7p anchors Pah1p to the membrane increasing substrate catalysis; homologous to mammalian lipins 1 and 2; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16467296]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 16467296]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IDA] [PMID 20876142]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IDA] [PMID 22121197]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008195 - phosphatidate phosphatase activity [Evidence IEA]; GO_function: GO:0008195 - phosphatidate phosphatase activity [Evidence IDA,IMP] [PMID 16467296]; GO_function: GO:0044212 - transcription regulatory region DNA binding [Evidence IDA] [PMID 15889145]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8437575]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0034389 - lipid particle organization [Evidence IMP] [PMID 21422231]; GO_process: GO:0034389 - lipid particle organization [Evidence IGI] [PMID 21829381]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 16467296]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 17971454]; GO_process: GO:0006276 - plasmid maintenance [Evidence IMP] [PMID 8437575]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0019432 - triglyceride biosynthetic process [Evidence IGI,IMP] [PMID 24196957]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 22121197]; phosphatidate phosphatase PAH1 2781619..2783778 Sugiyamaella lignohabitans 30034878 AWJ20_2916 CDS PRP39 NC_031674.1 2784654 2786297 D U1 snRNP protein involved in splicing; contains multiple tetriatricopeptide repeats; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 8196608]; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0000243 - commitment complex [Evidence IGI] [PMID 8196608]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0030627 - pre-mRNA 5'-splice site binding [Evidence IGI] [PMID 8196608]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000395 - mRNA 5'-splice site recognition [Evidence IGI] [PMID 8196608]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Prp39p 2784654..2786297 Sugiyamaella lignohabitans 30034880 AWJ20_2917 CDS SCY1 NC_031674.1 2787315 2789639 D Putative kinase; suppressor of GTPase mutant, similar to bovine rhodopsin kinase; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; Scy1p 2787315..2789639 Sugiyamaella lignohabitans 30034881 AWJ20_2918 CDS VMA13 NC_031674.1 2789823 2791241 R Subunit H of the V1 peripheral membrane domain of V-ATPase; part of the electrogenic proton pump found throughout the endomembrane system; serves as an activator or a structural stabilizer of the V-ATPase; the V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase) has eight subunits; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23708375]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 9442887]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 10224039]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 9442887]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; H(+)-transporting V1 sector ATPase subunit H complement(join(2789823..2791118,2791194..2791241)) Sugiyamaella lignohabitans 30034882 AWJ20_2919 CDS PTR2 NC_031674.1 2795839 2797593 D Integral membrane peptide transporter; mediates transport of di- and tri-peptides; conserved protein that contains 12 transmembrane domains; PTR2 expression is regulated by the N-end rule pathway via repression by Cup9p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IDA] [PMID 16096264]; GO_function: GO:0015197 - peptide transporter activity [Evidence IMP] [PMID 8264579]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0042937 - tripeptide transporter activity [Evidence IDA] [PMID 16096264]; GO_process: GO:0042938 - dipeptide transport [Evidence IDA] [PMID 16096264]; GO_process: GO:0006857 - oligopeptide transport [Evidence IEA]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015833 - peptide transport [Evidence IMP] [PMID 8264579]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IDA] [PMID 16096264]; Ptr2p 2795839..2797593 Sugiyamaella lignohabitans 30034883 AWJ20_2920 CDS AWJ20_2920 NC_031674.1 2796826 2797149 R uncharacterized protein complement(2796826..2797149) Sugiyamaella lignohabitans 30034885 AWJ20_2921 CDS LOC1 NC_031674.1 2797947 2798513 R Nuclear protein involved in asymmetric localization of ASH1 mRNA; binds double-stranded RNA in vitro; constituent of 66S pre-ribosomal particles; required at post-transcriptional step for efficient retrotransposition; absence results in decreased Ty1 Gag:GFP protein levels; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16871394]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IPI] [PMID 11309412]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16871394]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16871394]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16871394]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence IMP] [PMID 11309412]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Loc1p complement(2797947..2798513) Sugiyamaella lignohabitans 30034886 AWJ20_2922 CDS AWJ20_2922 NC_031674.1 2799157 2799639 D Phosphatase with a broad substrate specificity; has some similarity to GPM1/YKL152C, a phosphoglycerate mutase; YOR283W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IDA] [PMID 19753119]; GO_function: GO:0016791 - phosphatase activity [Evidence IDA] [PMID 20427268]; GO_process: GO:0016311 - dephosphorylation [Evidence IDA] [PMID 19753119]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; phosphoglycerate mutase 2799157..2799639 Sugiyamaella lignohabitans 30034887 AWJ20_2923 CDS RAD23 NC_031674.1 2802199 2803158 D Protein with ubiquitin-like N terminus; subunit of Nuclear Excision Repair Factor 2 (NEF2) with Rad4p that binds damaged DNA; enhances protein deglycosylation activity of Png1p; also involved, with Rad4p, in ubiquitylated protein turnover; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000111 - nucleotide-excision repair factor 2 complex [Evidence IDA] [PMID 7768886]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IPI] [PMID 15117949]; GO_component: GO:0000502 - proteasome complex [Evidence IMP] [PMID 15242647]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9813069]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9837874]; GO_function: GO:0000224 - peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity [Evidence IDA] [PMID 20016784]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 15121879]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 11323716]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15167887]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 19889839]; GO_process: GO:0006517 - protein deglycosylation [Evidence IDA] [PMID 20016784]; Rad23p 2802199..2803158 Sugiyamaella lignohabitans 30034888 AWJ20_2924 CDS AWJ20_2924 NC_031674.1 2803300 2803941 R uncharacterized protein complement(2803300..2803941) Sugiyamaella lignohabitans 30034889 AWJ20_2925 CDS SYO1 NC_031674.1 2804542 2806548 R Transport adaptor or symportin; facilitates synchronized nuclear coimport of the two 5S-rRNA binding proteins Rpl5p and Rpl11p; required for biogenesis of the large ribosomal subunit; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006606 - protein import into nucleus [Evidence IGI] [PMID 23118189]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Syo1p complement(2804542..2806548) Sugiyamaella lignohabitans 30034890 AWJ20_2926 CDS TRM11 NC_031674.1 2806727 2808055 R Catalytic subunit of adoMet-dependent tRNA methyltransferase complex; required for the methylation of the guanosine nucleotide at position 10 (m2G10) in tRNAs; contains a THUMP domain and a methyltransferase domain; another complex member is Trm112p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15899842]; GO_component: GO:0043528 - tRNA (m2G10) methyltransferase complex [Evidence IPI] [PMID 15899842]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 15899842]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS] [PMID 12872006]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS] [PMID 15899842]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0004809 - tRNA (guanine-N2-)-methyltransferase activity [Evidence IDA,IMP] [PMID 15899842]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA,IMP] [PMID 15899842]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm11p complement(2806727..2808055) Sugiyamaella lignohabitans 30034891 AWJ20_2927 CDS HRP1 NC_031674.1 2809243 2810427 D Subunit of cleavage factor I; cleavage factor I is a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9334319]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 11344258]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15572678]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9334319]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9334319]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15703440]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 17684230]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IMP] [PMID 9334319]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA]; Hrp1p 2809243..2810427 Sugiyamaella lignohabitans 30034892 AWJ20_2928 CDS ZRT3 NC_031674.1 2811468 2812877 D Vacuolar membrane zinc transporter; transports zinc from storage in the vacuole to the cytoplasm when needed; transcription is induced under conditions of zinc deficiency; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 10856230]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IMP] [PMID 10856230]; GO_process: GO:0006882 - cellular zinc ion homeostasis [Evidence IMP] [PMID 10856230]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IMP] [PMID 10856230]; Zn(2+) transporter ZRT3 2811468..2812877 Sugiyamaella lignohabitans 30034893 AWJ20_2929 CDS SMF1 NC_031674.1 2813035 2814702 R Divalent metal ion transporter; broad specificity for di-valent and tri-valent metals; post-translationally regulated by levels of metal ions; member of the Nramp family of metal transport proteins; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8643535]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IDA] [PMID 10574989]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0015295 - solute:proton symporter activity [Evidence IDA] [PMID 10574989]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015691 - cadmium ion transport [Evidence IGI] [PMID 9115231]; GO_process: GO:0006876 - cellular cadmium ion homeostasis [Evidence IGI] [PMID 9115231]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IGI] [PMID 9115231]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IMP] [PMID 8643535]; GO_process: GO:0006825 - copper ion transport [Evidence IGI] [PMID 9115231]; GO_process: GO:0006826 - iron ion transport [Evidence IGI] [PMID 10930410]; GO_process: GO:0006828 - manganese ion transport [Evidence IMP] [PMID 8643535]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; divalent metal ion transporter SMF1 complement(2813035..2814702) Sugiyamaella lignohabitans 30034894 AWJ20_2930 CDS ASF1 NC_031674.1 2815852 2816837 R Nucleosome assembly factor; involved in chromatin assembly and disassembly, anti-silencing protein that causes derepression of silent loci when overexpressed; plays a role in regulating Ty1 transposition; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11404324]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0042393 - histone binding [Evidence IMP] [PMID 15840725]; GO_process: GO:0006335 - DNA replication-dependent nucleosome assembly [Evidence IDA] [PMID 11412995]; GO_process: GO:0006336 - DNA replication-independent nucleosome assembly [Evidence IDA] [PMID 16303565]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 15840725]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 15840725]; GO_process: GO:0033523 - histone H2B ubiquitination [Evidence IMP] [PMID 24824343]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 16627621]; GO_process: GO:0043486 - histone exchange [Evidence IMP] [PMID 17679090]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IMP] [PMID 16678113]; GO_process: GO:0035066 - positive regulation of histone acetylation [Evidence IDA,IMP] [PMID 17272722]; GO_process: GO:0035066 - positive regulation of histone acetylation [Evidence IMP] [PMID 17679090]; GO_process: GO:0035066 - positive regulation of histone acetylation [Evidence IMP,IPI] [PMID 17690098]; GO_process: GO:0035066 - positive regulation of histone acetylation [Evidence IDA,IGI,IMP] [PMID 18458063]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 22308335]; GO_process: GO:0043618 - regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IMP] [PMID 19620280]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; nucleosome assembly factor ASF1 complement(join(2815852..2816204,2816627..2816837)) Sugiyamaella lignohabitans 30034896 AWJ20_2931 CDS ITR1 NC_031674.1 2818807 2820654 D Myo-inositol transporter; member of the sugar transporter superfamily; expression is repressed by inositol and choline via Opi1p and derepressed via Ino2p and Ino4p; relative distribution to the vacuole increases upon DNA replication stress; ITR1 has a paralog, ITR2, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 2040626]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16233524]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0005365 - myo-inositol transmembrane transporter activity [Evidence IMP,ISS] [PMID 2040626]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015798 - myo-inositol transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 24603354]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; myo-inositol transporter ITR1 2818807..2820654 Sugiyamaella lignohabitans 30034897 AWJ20_2932 CDS SPO14 NC_031674.1 2821574 2826457 D Phospholipase D; catalyzes the hydrolysis of phosphatidylcholine, producing choline and phosphatidic acid; involved in Sec14p-independent secretion; required for meiosis and spore formation; differently regulated in secretion and meiosis; participates in transcription initiation and/or early elongation of specific genes; interacts with 'foot domain' of RNA polymerase II; deletion results in abnormal CTD-Ser5 phosphorylation of RNA polymerase II at specific promoter regions; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 10848624]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21954159]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 9693364]; GO_function: GO:0070290 - N-acylphosphatidylethanolamine-specific phospholipase D activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_function: GO:0004630 - phospholipase D activity [Evidence IEA]; GO_function: GO:0004630 - phospholipase D activity [Evidence IDA] [PMID 11514437]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IMP] [PMID 16554438]; GO_process: GO:0000753 - cell morphogenesis involved in conjugation with cellular fusion [Evidence IMP] [PMID 12702348]; GO_process: GO:0000753 - cell morphogenesis involved in conjugation with cellular fusion [Evidence IGI] [PMID 18036176]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 10848624]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 11514437]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006644 - phospholipid metabolic process [Evidence IDA,IMP] [PMID 8576189]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; phospholipase D 2821574..2826457 Sugiyamaella lignohabitans 30034898 AWJ20_2933 CDS PPZ1 NC_031674.1 2828685 2830736 R Serine/threonine protein phosphatase Z, isoform of Ppz2p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance; PPZ1 has a paralog, PPZ2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0019897 - extrinsic component of plasma membrane [Evidence IDA] [PMID 16166647]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8824289]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004724 - magnesium-dependent protein serine/threonine phosphatase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 7615085]; GO_process: GO:0034613 - cellular protein localization [Evidence IMP] [PMID 21237705]; GO_process: GO:0006883 - cellular sodium ion homeostasis [Evidence IGI,IMP] [PMID 7768897]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 21237705]; Ppz1p complement(2828685..2830736) Sugiyamaella lignohabitans 30034899 AWJ20_2934 CDS CDC45 NC_031674.1 2831431 2833476 R DNA replication initiation factor; recruited to MCM pre-RC complexes at replication origins; promotes release of MCM from Mcm10p, recruits elongation machinery; binds tightly to ssDNA, which disrupts interaction with the MCM helicase and stalls it during replication stress; mutants in human homolog may cause velocardiofacial and DiGeorge syndromes; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16103218]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8901577]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 12019222]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 15494305]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9554851]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA,IMP] [PMID 23382391]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI,IMP] [PMID 2044962]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IPI] [PMID 9335335]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16980387]; Cdc45p complement(2831431..2833476) Sugiyamaella lignohabitans 30034900 AWJ20_2935 CDS AWJ20_2935 NC_031674.1 2835052 2836026 D uncharacterized protein 2835052..2836026 Sugiyamaella lignohabitans 30034901 AWJ20_2936 CDS FRE1 NC_031674.1 2842192 2843106 R Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low copper and iron levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 7814363]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre1p complement(2842192..2843106) Sugiyamaella lignohabitans 30034902 AWJ20_2937 CDS FRE5 NC_031674.1 2844620 2845570 R Putative ferric reductase with similarity to Fre2p; expression induced by low iron levels; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence ISA] [PMID 9726978]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre5p complement(2844620..2845570) Sugiyamaella lignohabitans 30034903 AWJ20_2938 CDS BUD4 NC_031674.1 2847617 2848651 R Anillin-like protein involved in bud-site selection; required for the axial budding pattern; localizes with septins to the bud neck in mitosis and may constitute an axial landmark for the next round of budding; required for the formation and disassembly of the double septin ring structure, and generally for septin organization; in vivo substrate of Cdc28p/Clb2p; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 22553209]; GO_function: GO:0005525 - GTP binding [Evidence IDA,IMP] [PMID 22553209]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 22553209]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IMP] [PMID 22553209]; Bud4p complement(2847617..2848651) Sugiyamaella lignohabitans 30034904 AWJ20_2939 CDS ACO2 NC_031674.1 2854398 2856521 D Putative mitochondrial aconitase isozyme; similarity to Aco1p, an aconitase required for the TCA cycle; expression induced during growth on glucose, by amino acid starvation via Gcn4p, and repressed on ethanol; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0003994 - aconitate hydratase activity [Evidence IEA]; GO_function: GO:0003994 - aconitate hydratase activity [Evidence ISS] [PMID 10592175]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; aconitate hydratase ACO2 2854398..2856521 Sugiyamaella lignohabitans 30034905 AWJ20_2940 CDS CDC25 NC_031674.1 2856633 2860274 R Ras family guanine nucleotide exchange factor CDC25 complement(2856633..2860274) Sugiyamaella lignohabitans 30034907 AWJ20_2941 CDS JLP1 NC_031674.1 2862787 2863974 R Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p complement(2862787..2863974) Sugiyamaella lignohabitans 30034908 AWJ20_2942 CDS AWJ20_2942 NC_031674.1 2864351 2865949 R C6 finger domain protein complement(2864351..2865949) Sugiyamaella lignohabitans 30034909 AWJ20_2943 CDS AWJ20_2943 NC_031674.1 2866973 2868979 D copper-containing amine oxidase 2866973..2868979 Sugiyamaella lignohabitans 30034910 AWJ20_2944 CDS SAY1 NC_031674.1 2869014 2870000 R Sterol deacetylase; component of the sterol acetylation/deacetylation cycle along with Atf2p; active both in the endoplasmic reticulum (ER) and in lipid droplets; integral membrane protein with active site in the ER lumen; green fluorescent protein (GFP)-fusion protein localizes to the ER; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 24868093]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 18034159]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 18034159]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0034084 - steryl deacetylase activity [Evidence IDA,IMP] [PMID 18034159]; GO_process: GO:0009636 - response to toxic substance [Evidence IMP] [PMID 18034159]; GO_process: GO:0034210 - sterol deacetylation [Evidence IMP] [PMID 18034159]; GO_process: GO:0016125 - sterol metabolic process [Evidence IMP] [PMID 18034159]; Say1p complement(2869014..2870000) Sugiyamaella lignohabitans 30034911 AWJ20_2945 CDS AWJ20_2945 NC_031674.1 2870752 2872350 D uncharacterized protein 2870752..2872350 Sugiyamaella lignohabitans 30034912 AWJ20_2946 CDS PYD3 NC_031674.1 2872577 2873833 D similar to S.kluyveri pyd3 (AAK60518) beta-alanine synthase involved in pyrimidine catabolism; allele of CaO19.8949; putative beta-alanine synthase 2872577..2873833 Sugiyamaella lignohabitans 30034913 AWJ20_2947 CDS STB5 NC_031674.1 2873856 2875625 R Transcription factor; involved in regulating multidrug resistance and oxidative stress response; forms a heterodimer with Pdr1p; contains a Zn(II)2Cys6 zinc finger domain that interacts with a pleiotropic drug resistance element in vitro; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11943786]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA,IGI,IMP,IPI,ISS] [PMID 11943786]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0043619 - regulation of transcription from RNA polymerase II promoter in response to oxidative stress [Evidence IMP] [PMID 16914749]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0009410 - response to xenobiotic stimulus [Evidence IMP] [PMID 11943786]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IDA] [PMID 11943786]; Stb5p complement(2873856..2875625) Sugiyamaella lignohabitans 30034914 AWJ20_2948 CDS AWJ20_2948 NC_031674.1 2876018 2877655 R uncharacterized protein complement(2876018..2877655) Sugiyamaella lignohabitans 30034915 AWJ20_2949 CDS AWJ20_2949 NC_031674.1 2878843 2881092 D uncharacterized protein 2878843..2881092 Sugiyamaella lignohabitans 30034916 AWJ20_2950 CDS AWJ20_2950 NC_031674.1 2881200 2882501 R uncharacterized protein complement(2881200..2882501) Sugiyamaella lignohabitans 30034918 AWJ20_2951 CDS CDC37 NC_031674.1 2882902 2884266 D Essential Hsp90p co-chaperone; necessary for passage through the START phase of the cell cycle; stabilizes protein kinase nascent chains and participates along with Hsp90p in their folding; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 9242486]; GO_process: GO:0000161 - MAPK cascade involved in osmosensory signaling pathway [Evidence IMP,IPI] [PMID 17220467]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0050821 - protein stabilization [Evidence IMP] [PMID 17242065]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 7753858]; GO_process: GO:0032872 - regulation of stress-activated MAPK cascade [Evidence IMP,IPI] [PMID 17220467]; GO_process: GO:0030474 - spindle pole body duplication [Evidence IGI,IMP] [PMID 9060463]; Cdc37p 2882902..2884266 Sugiyamaella lignohabitans 30034919 AWJ20_2952 CDS GRS1 NC_031674.1 2884654 2886630 D Cytoplasmic and mitochondrial glycyl-tRNA synthase; ligates glycine to the cognate anticodon-bearing tRNA; transcription termination factor that may interact with the 3'-end of pre-mRNA to promote 3'-end formation; GRS1 has a paralog, GRS2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 10874035]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 10874035]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004820 - glycine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004820 - glycine-tRNA ligase activity [Evidence IMP,ISS] [PMID 10874035]; GO_function: GO:0004820 - glycine-tRNA ligase activity [Evidence IDA] [PMID 21877692]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IMP] [PMID 10224248]; GO_process: GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006426 - glycyl-tRNA aminoacylation [Evidence IMP,ISS] [PMID 10874035]; GO_process: GO:0070150 - mitochondrial glycyl-tRNA aminoacylation [Evidence IMP] [PMID 10874035]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; glycine--tRNA ligase 2884654..2886630 Sugiyamaella lignohabitans 30034920 AWJ20_2953 CDS MUD1 NC_031674.1 2887422 2888021 R U1 snRNP A protein; homolog of human U1-A; involved in nuclear mRNA splicing; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IGI,ISS] [PMID 8449403]; GO_function: GO:0030619 - U1 snRNA binding [Evidence IPI] [PMID 8849781]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0017069 - snRNA binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI] [PMID 8449403]; Mud1p complement(2887422..2888021) Sugiyamaella lignohabitans 30034921 AWJ20_2954 CDS HLJ1 NC_031674.1 2888614 2889240 D Chaperone protein dnaJ 2888614..2889240 Sugiyamaella lignohabitans 30034922 AWJ20_2955 CDS PTH2 NC_031674.1 2889633 2890028 D One of two mitochondrially-localized peptidyl-tRNA hydrolases; negatively regulates the ubiquitin-proteasome pathway via interactions with ubiquitin-like ubiquitin-associated proteins; dispensable for cell growth; see also PTH1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 12475929]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IGI] [PMID 12475929]; GO_function: GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IDA] [PMID 12799450]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; GO_process: GO:0032435 - negative regulation of proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA,IMP] [PMID 17082762]; Pth2p 2889633..2890028 Sugiyamaella lignohabitans 30034923 AWJ20_2956 CDS AWJ20_2956 NC_031674.1 2890150 2892816 R uncharacterized protein complement(2890150..2892816) Sugiyamaella lignohabitans 30034924 AWJ20_2957 CDS ERG5 NC_031674.1 2893300 2894577 R C-22 sterol desaturase; a cytochrome P450 enzyme that catalyzes the formation of the C-22(23) double bond in the sterol side chain in ergosterol biosynthesis; may be a target of azole antifungal drugs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0000249 - C-22 sterol desaturase activity [Evidence IDA] [PMID 8543054]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 8543054]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 8635732]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; C-22 sterol desaturase complement(2893300..2894577) Sugiyamaella lignohabitans 30034925 AWJ20_2958 CDS ANP1 NC_031674.1 2896996 2898279 R Subunit of the alpha-1,6 mannosyltransferase complex; type II membrane protein; has a role in retention of glycosyltransferases in the Golgi; involved in osmotic sensitivity and resistance to aminonitrophenyl propanediol; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000137 - Golgi cis cisterna [Evidence IDA] [PMID 9430634]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 9434768]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IDA,IMP] [PMID 9430634]; Anp1p complement(2896996..2898279) Sugiyamaella lignohabitans 30034926 AWJ20_2959 CDS RPN14 NC_031674.1 2899279 2900490 D Assembly chaperone for the 19S proteasome regulatory particle base; proteasome-interacting protein involved in the assembly of the base subcomplex of the 19S proteasome regulatory particle (RP); null mutants accumulate ubiquitinated Gcn4p and display decreased 26S proteasome stability; interacts with Rpt5p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19446323]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19446323]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI] [PMID 19412159]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI] [PMID 19446322]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446323]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17499717]; Rpn14p 2899279..2900490 Sugiyamaella lignohabitans 30034927 AWJ20_2960 CDS VMA2 NC_031674.1 2900600 2902530 R Subunit B of V1 peripheral membrane domain of vacuolar H+-ATPase; an electrogenic proton pump found throughout the endomembrane system; contains nucleotide binding sites; also detected in the cytoplasm; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 18048916]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0033180 - proton-transporting V-type ATPase, V1 domain [Evidence IEA]; GO_component: GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence IDA] [PMID 2478556]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence IDA] [PMID 2857169]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IMP] [PMID 2141385]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0046034 - ATP metabolic process [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IMP] [PMID 10991947]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:1902906 - proteasome storage granule assembly [Evidence IMP] [PMID 23690178]; GO_process: GO:0015992 - proton transport [Evidence IEA,IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 2141385]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IMP] [PMID 18048916]; GO_process: GO:0007035 - vacuolar acidification [Evidence IMP] [PMID 2141385]; H(+)-transporting V1 sector ATPase subunit B complement(join(2900600..2902116,2902488..2902530)) Sugiyamaella lignohabitans 30034929 AWJ20_2961 CDS AWJ20_2961 NC_031674.1 2902932 2904947 R uncharacterized protein complement(2902932..2904947) Sugiyamaella lignohabitans 30034930 AWJ20_2962 CDS RHB1 NC_031674.1 2905406 2905960 R Putative Rheb-related GTPase; involved in regulating canavanine resistance and arginine uptake; member of the Ras superfamily of G-proteins; GO_component: GO:0019897 - extrinsic component of plasma membrane [Evidence IGI] [PMID 10753927]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 10753927]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0015809 - arginine transport [Evidence IGI,IMP] [PMID 10753927]; GO_process: GO:0015819 - lysine transport [Evidence IMP] [PMID 10753927]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IMP] [PMID 17101785]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; putative GTPase RHB1 complement(2905406..2905960) Sugiyamaella lignohabitans 30034931 AWJ20_2963 CDS ACH1 NC_031674.1 2909332 2910897 D Protein with CoA transferase activity; particularly for CoASH transfer from succinyl-CoA to acetate; has minor acetyl-CoA-hydrolase activity; phosphorylated; required for acetate utilization and for diploid pseudohyphal growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11746603]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 12606555]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008775 - acetate CoA-transferase activity [Evidence IDA] [PMID 19298859]; GO_function: GO:0003986 - acetyl-CoA hydrolase activity [Evidence IEA]; GO_function: GO:0003986 - acetyl-CoA hydrolase activity [Evidence IDA] [PMID 12606555]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0006083 - acetate metabolic process [Evidence IMP] [PMID 8841387]; GO_process: GO:0006084 - acetyl-CoA metabolic process [Evidence IEA]; Ach1p 2909332..2910897 Sugiyamaella lignohabitans 30034932 AWJ20_2964 CDS AWJ20_2964 NC_031674.1 2910938 2911894 R uncharacterized protein complement(2910938..2911894) Sugiyamaella lignohabitans 30034933 AWJ20_2965 CDS URK1 NC_031674.1 2913487 2913807 D Uridine/cytidine kinase; component of the pyrimidine ribonucleotide salvage pathway that converts uridine into UMP and cytidine into CMP; involved in the pyrimidine deoxyribonucleotide salvage pathway, converting deoxycytidine into dCMP; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0004849 - uridine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004849 - uridine kinase activity [Evidence IMP] [PMID 10501935]; GO_process: GO:0044211 - CTP salvage [Evidence IEA]; GO_process: GO:0044206 - UMP salvage [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0008655 - pyrimidine-containing compound salvage [Evidence IGI,IMP] [PMID 11872485]; uridine kinase URK1 2913487..2913807 Sugiyamaella lignohabitans 30034934 AWJ20_2966 CDS AWJ20_2966 NC_031674.1 2914388 2915056 D uncharacterized protein 2914388..2915056 Sugiyamaella lignohabitans 30034935 AWJ20_2967 CDS PHO91 NC_031674.1 2915974 2918526 R Low-affinity vacuolar phosphate transporter; exports phosphate from the vacuolar lumen to the cytosol; regulates phosphate and polyphosphate metabolism; acts upstream of Pho81p in regulation of the PHO pathway; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 17804816]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015169 - glycerol-3-phosphate transmembrane transporter activity [Evidence IGI,IMP] [PMID 20133652]; GO_function: GO:0005315 - inorganic phosphate transmembrane transporter activity [Evidence IGI] [PMID 11779791]; GO_function: GO:0005315 - inorganic phosphate transmembrane transporter activity [Evidence IMP] [PMID 12581367]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015794 - glycerol-3-phosphate transport [Evidence IGI,IMP] [PMID 20133652]; GO_process: GO:0006817 - phosphate ion transport [Evidence IEA]; GO_process: GO:0006817 - phosphate ion transport [Evidence IGI] [PMID 11779791]; GO_process: GO:0006797 - polyphosphate metabolic process [Evidence IMP] [PMID 17804816]; GO_process: GO:2000185 - regulation of phosphate transmembrane transport [Evidence IGI] [PMID 12821119]; GO_process: GO:0006814 - sodium ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pho91p complement(2915974..2918526) Sugiyamaella lignohabitans 30034936 AWJ20_2968 CDS AWJ20_2968 NC_031674.1 2916221 2916544 D uncharacterized protein 2916221..2916544 Sugiyamaella lignohabitans 30034937 AWJ20_2969 CDS AWJ20_2969 NC_031674.1 2917094 2917462 D uncharacterized protein 2917094..2917462 Sugiyamaella lignohabitans 30034938 AWJ20_2970 CDS TPS3 NC_031674.1 2921315 2924077 D Regulatory subunit of trehalose-6-phosphate synthase/phosphatase; involved in synthesis of storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway; TPS3 has a paralog, TSL1, that arose from the whole genome duplication; GO_component: GO:0005946 - alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) [Evidence IGI,IMP,IPI] [PMID 9837904]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0003825 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity [Evidence IMP,ISS] [PMID 9837904]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IMP,ISS] [PMID 9837904]; GO_function: GO:0004805 - trehalose-phosphatase activity [Evidence IGI] [PMID 9837904]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IEA]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IGI,IMP,IPI] [PMID 9837904]; Tps3p 2921315..2924077 Sugiyamaella lignohabitans 30034940 AWJ20_2971 CDS AWJ20_2971 NC_031674.1 2927716 2928543 R C-terminal domain kinase I (CTDK-I) gamma subunit (predicted) complement(2927716..2928543) Sugiyamaella lignohabitans 30034941 AWJ20_2972 CDS TIF11 NC_031674.1 2928940 2929404 D Translation initiation factor eIF1A; essential protein that forms a complex with Sui1p (eIF1) and the 40S ribosomal subunit and scans for the start codon; C-terminus associates with Fun12p (eIF5B); N terminus interacts with eIF2 and eIF3; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IDA] [PMID 16380131]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IDA] [PMID 17242201]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003725 - double-stranded RNA binding [Evidence IDA] [PMID 17673174]; GO_function: GO:0043024 - ribosomal small subunit binding [Evidence IDA] [PMID 17434125]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 12008673]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 10982835]; GO_process: GO:0001732 - formation of translation initiation complex [Evidence IMP] [PMID 16461768]; GO_process: GO:0001732 - formation of translation initiation complex [Evidence IGI] [PMID 17242201]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IMP] [PMID 12514125]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 15664195]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IMP] [PMID 15838098]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 17434125]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; Tif11p 2928940..2929404 Sugiyamaella lignohabitans 30034942 AWJ20_2973 CDS SLX1 NC_031674.1 2934110 2934871 D Endonuclease involved in DNA recombination and repair; subunit of a complex, with Slx4p, that hydrolyzes 5' branches from duplex DNA in response to stalled or converging replication forks; function overlaps with that of Sgs1p-Top3p; GO_component: GO:0033557 - Slx1-Slx4 complex [Evidence IEA,IEA]; GO_component: GO:0033557 - Slx1-Slx4 complex [Evidence IPI] [PMID 12832395]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 12832395]; GO_function: GO:0017108 - 5'-flap endonuclease activity [Evidence IEA,IEA]; GO_function: GO:0017108 - 5'-flap endonuclease activity [Evidence IDA] [PMID 12832395]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IGI] [PMID 12832395]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Slx1p 2934110..2934871 Sugiyamaella lignohabitans 30034943 AWJ20_2974 CDS AWJ20_2974 NC_031674.1 2935023 2936225 R uncharacterized protein complement(2935023..2936225) Sugiyamaella lignohabitans 30034944 AWJ20_2975 CDS ROT2 NC_031674.1 2937134 2940013 R Glucosidase II catalytic subunit; required for normal cell wall synthesis; mutations in rot2 suppress tor2 mutations, and are synthetically lethal with rot1 mutations; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence ISS] [PMID 8910335]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 16373354]; GO_component: GO:0017177 - glucosidase II complex [Evidence IPI] [PMID 16373354]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0033919 - glucan 1,3-alpha-glucosidase activity [Evidence IEA]; GO_function: GO:0033919 - glucan 1,3-alpha-glucosidase activity [Evidence IMP] [PMID 16373354]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IMP] [PMID 9430631]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; glucan 1,3-alpha-glucosidase ROT2 complement(2937134..2940013) Sugiyamaella lignohabitans 30034945 AWJ20_2976 CDS OPT2 NC_031674.1 2941719 2944265 D Oligopeptide transporter; member of the OPT family, with potential orthologs in S. pombe and C. albicans; also plays a role in formation of mature vacuoles; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IC] [PMID 9643541]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 19767828]; Opt2p 2941719..2944265 Sugiyamaella lignohabitans 30034946 AWJ20_2977 CDS TSC10 NC_031674.1 2944698 2945660 D 3-ketosphinganine reductase; catalyzes the second step in phytosphingosine synthesis; essential for growth in the absence of exogenous dihydrosphingosine or phytosphingosine; localized to lipid droplets; member of short chain dehydrogenase/reductase protein family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_function: GO:0047560 - 3-dehydrosphinganine reductase activity [Evidence IEA]; GO_function: GO:0047560 - 3-dehydrosphinganine reductase activity [Evidence IDA] [PMID 9804843]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006666 - 3-keto-sphinganine metabolic process [Evidence IDA] [PMID 9804843]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IDA,IMP,ISS] [PMID 9804843]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA,IEA]; 3-dehydrosphinganine reductase 2944698..2945660 Sugiyamaella lignohabitans 30034947 AWJ20_2978 CDS MRPL8 NC_031674.1 2946345 2946968 D Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 2183197]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL8 2946345..2946968 Sugiyamaella lignohabitans 30034948 AWJ20_2979 CDS TRM732 NC_031674.1 2947568 2951869 D Interacts with Trm7p for 2'-O-methylation of C32 of substrate tRNAs; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; non-essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm732p 2947568..2951869 Sugiyamaella lignohabitans 30034949 AWJ20_2980 CDS AWJ20_2980 NC_031674.1 2951952 2953331 R eukaryotic translation initiation factor 3 subunit 6 complement(2951952..2953331) Sugiyamaella lignohabitans 30034951 AWJ20_2981 CDS DYN1 NC_031674.1 2955281 2956075 R Cytoplasmic heavy chain dynein; microtubule motor protein; member of the AAA+ protein family, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p; motility along microtubules inhibited by She1p; GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 16580990]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 15642746]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005868 - cytoplasmic dynein complex [Evidence IPI] [PMID 9658168]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 12566428]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 15965467]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0030286 - dynein complex [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 16580990]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IDA] [PMID 16873064]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0040001 - establishment of mitotic spindle localization [Evidence IMP] [PMID 21633107]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IGI,IMP] [PMID 9201714]; dynein heavy chain complement(2955281..2956075) Sugiyamaella lignohabitans 30034952 AWJ20_2982 CDS DYN1 NC_031674.1 2956372 2959422 R Cytoplasmic heavy chain dynein; microtubule motor protein; member of the AAA+ protein family, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p; motility along microtubules inhibited by She1p; GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 16580990]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 15642746]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005868 - cytoplasmic dynein complex [Evidence IPI] [PMID 9658168]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 12566428]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 15965467]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0030286 - dynein complex [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 16580990]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IDA] [PMID 16873064]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0040001 - establishment of mitotic spindle localization [Evidence IMP] [PMID 21633107]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IGI,IMP] [PMID 9201714]; dynein heavy chain complement(2956372..2959422) Sugiyamaella lignohabitans 30034953 AWJ20_2983 CDS DYN1 NC_031674.1 2959478 2961640 R Cytoplasmic heavy chain dynein; microtubule motor protein; member of the AAA+ protein family, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p; motility along microtubules inhibited by She1p; GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 16580990]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 15642746]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005868 - cytoplasmic dynein complex [Evidence IPI] [PMID 9658168]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 12566428]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 15965467]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0030286 - dynein complex [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 16580990]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IDA] [PMID 16873064]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0040001 - establishment of mitotic spindle localization [Evidence IMP] [PMID 21633107]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IGI,IMP] [PMID 9201714]; dynein heavy chain complement(2959478..2961640) Sugiyamaella lignohabitans 30034954 AWJ20_2984 CDS DYN1 NC_031674.1 2962595 2966602 R Cytoplasmic heavy chain dynein; microtubule motor protein; member of the AAA+ protein family, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p; motility along microtubules inhibited by She1p; GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 16580990]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 15642746]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005868 - cytoplasmic dynein complex [Evidence IPI] [PMID 9658168]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 12566428]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 15965467]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0030286 - dynein complex [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 16580990]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IDA] [PMID 16873064]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0040001 - establishment of mitotic spindle localization [Evidence IMP] [PMID 21633107]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IGI,IMP] [PMID 9201714]; dynein heavy chain complement(2962595..2966602) Sugiyamaella lignohabitans 30034955 AWJ20_2985 CDS DYN1 NC_031674.1 2966746 2968479 R Cytoplasmic heavy chain dynein; microtubule motor protein; member of the AAA+ protein family, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p; motility along microtubules inhibited by She1p; GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 16580990]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 15642746]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005868 - cytoplasmic dynein complex [Evidence IPI] [PMID 9658168]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 12566428]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 15965467]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0030286 - dynein complex [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 16580990]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IDA] [PMID 16873064]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0040001 - establishment of mitotic spindle localization [Evidence IMP] [PMID 21633107]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0000741 - karyogamy [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IGI,IMP] [PMID 9201714]; dynein heavy chain complement(2966746..2968479) Sugiyamaella lignohabitans 30034956 AWJ20_2986 CDS AWJ20_2986 NC_031674.1 2970246 2971265 R uncharacterized protein complement(2970246..2971265) Sugiyamaella lignohabitans 30034957 AWJ20_2987 CDS SAF1 NC_031674.1 2972204 2973478 D F-Box protein involved in proteasome-dependent degradation of Aah1p; involved in proteasome-dependent degradation of Aah1p during entry of cells into quiescence; interacts with Skp1; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 11283612]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IMP,IPI,ISS] [PMID 17517885]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 19882662]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP,ISS] [PMID 17517885]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16677311]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP,ISS] [PMID 17517885]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; SCF ubiquitin ligase complex subunit SAF1 2972204..2973478 Sugiyamaella lignohabitans 30034958 AWJ20_2988 CDS SEC5 NC_031674.1 2974420 2977425 R Essential 107kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane prior to SNARE-mediated fusion; involved in assembly of the exocyst complex; required with Sec3p for ER inheritance where it promotes anchoring of the cortical ER at the bud tip; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11595741]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11595741]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17717527]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11595741]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 7026045]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IMP] [PMID 15583030]; GO_process: GO:0001927 - exocyst assembly [Evidence IMP] [PMID 15583030]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 15583030]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 6996832]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Sec5p complement(2974420..2977425) Sugiyamaella lignohabitans 30034959 AWJ20_2989 CDS PEP3 NC_031674.1 2978780 2981899 D tethering complex subunit PEP3 2978780..2981899 Sugiyamaella lignohabitans 30034960 AWJ20_2990 CDS AWJ20_2990 NC_031674.1 2983684 2984886 D uncharacterized protein 2983684..2984886 Sugiyamaella lignohabitans 30034962 AWJ20_2991 CDS AWJ20_2991 NC_031674.1 2985404 2985805 D Acyl-protein thioesterase responsible for depalmitoylation of Gpa1p; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and nucleus and is induced in response to the DNA-damaging agent MMS; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0008474 - palmitoyl-(protein) hydrolase activity [Evidence IDA,IMP,ISS] [PMID 12080046]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0035601 - protein deacylation [Evidence IDA,IMP] [PMID 12080046]; palmitoyl-(protein) hydrolase 2985404..2985805 Sugiyamaella lignohabitans 30034963 AWJ20_2992 CDS SEN54 NC_031674.1 2987754 2988950 D Subunit of the tRNA splicing endonuclease; tRNA splicing endonuclease is composed of Sen2p, Sen15p, Sen34p, and Sen54p; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA,IMP] [PMID 12925762]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000214 - tRNA-intron endonuclease complex [Evidence IDA] [PMID 9200603]; GO_function: GO:0000213 - tRNA-intron endonuclease activity [Evidence IDA] [PMID 9200603]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0000379 - tRNA-type intron splice site recognition and cleavage [Evidence IDA] [PMID 9200603]; Sen54p 2987754..2988950 Sugiyamaella lignohabitans 30034964 AWJ20_2993 CDS BRO1 NC_031674.1 2989023 2991728 R Cytoplasmic class E vacuolar protein sorting (VPS) factor; coordinates deubiquitination in the multivesicular body (MVB) pathway by recruiting Doa4p to endosomes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12668726]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12668726]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15935782]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 17446860]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IGI,IMP] [PMID 23444383]; GO_process: GO:0016579 - protein deubiquitination [Evidence IGI,IPI] [PMID 15326198]; GO_process: GO:0043328 - protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IMP] [PMID 14523026]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007584 - response to nutrient [Evidence IMP] [PMID 8649366]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12062418]; GO_process: GO:0007034 - vacuolar transport [Evidence IMP] [PMID 12668726]; Bro1p complement(2989023..2991728) Sugiyamaella lignohabitans 30034965 AWJ20_2994 CDS RMD5 NC_031674.1 2992883 2993689 D Component of GID Complex that confers ubiquitin ligase (U3) activity; necessary for polyubiquitination and degradation of the gluconeogenic enzyme fructose-1,6-bisphosphatase; forms dimer with Fyv10p that is then recruited to GID Complex by Gid8p; also required for sporulation; conserved protein that has a degenerate RING finger domain; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 12686616]; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 16872538]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12686616]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 18508925]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; ubiquitin-protein ligase RMD5 2992883..2993689 Sugiyamaella lignohabitans 30034966 AWJ20_2995 CDS ELC1 NC_031674.1 2993912 2994277 R Elongin C, conserved among eukaryotes; forms a complex with Cul3p that polyubiquitylates monoubiquitylated RNA polymerase II to trigger its proteolysis; plays a role in global genomic repair; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IPI] [PMID 16675952]; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IMP] [PMID 17296727]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0070449 - elongin complex [Evidence IPI] [PMID 10430890]; GO_component: GO:0070449 - elongin complex [Evidence IPI] [PMID 10753924]; GO_component: GO:0000113 - nucleotide-excision repair factor 4 complex [Evidence IDA] [PMID 15226437]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16675952]; GO_process: GO:0070911 - global genome nucleotide-excision repair [Evidence IMP] [PMID 18817898]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 16675952]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16705154]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; elongin C complement(2993912..2994277) Sugiyamaella lignohabitans 30034967 AWJ20_2996 CDS VPS16 NC_031674.1 2994461 2997058 D tethering complex subunit VPS16 2994461..2997058 Sugiyamaella lignohabitans 30034968 AWJ20_2997 CDS CHL4 NC_031674.1 2997169 2997945 R Outer kinetochore protein required for chromosome stability; involved in new kinetochore assembly and sister chromatid cohesion; peripheral component of the Ctf19 kinetochore complex that interacts with Ctf19p, Ctf3p, Iml3p and Mif2p; required for the spindle assembly checkpoint; orthologous to human centromere constitutive-associated network (CCAN) subunit CENP-N and fission yeast mis15; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0000942 - condensed nuclear chromosome outer kinetochore [Evidence IDA] [PMID 12589047]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 12589047]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP] [PMID 12642611]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0034508 - centromere complex assembly [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 8243998]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 9339342]; GO_process: GO:0034089 - establishment of meiotic sister chromatid cohesion [Evidence IMP] [PMID 19730685]; GO_process: GO:0034087 - establishment of mitotic sister chromatid cohesion [Evidence IMP] [PMID 19730685]; GO_process: GO:0051382 - kinetochore assembly [Evidence IMP] [PMID 12642611]; GO_process: GO:0034090 - maintenance of meiotic sister chromatid cohesion [Evidence IMP] [PMID 14752166]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0071459 - protein localization to chromosome, centromeric region [Evidence IMP] [PMID 16357219]; GO_process: GO:0071173 - spindle assembly checkpoint [Evidence IMP] [PMID 22426531]; Chl4p complement(2997169..2997945) Sugiyamaella lignohabitans 30034969 AWJ20_2998 CDS NOP4 NC_031674.1 2999172 3001187 D Nucleolar protein; essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; contains four RNA recognition motifs (RRMs); GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9312154]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8039505]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 8039505]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop4p 2999172..3001187 Sugiyamaella lignohabitans 30034970 AWJ20_2999 CDS TRM44 NC_031674.1 3001322 3003025 R tRNA(Ser) Um(44) 2'-O-methyltransferase; involved in maintaining levels of the tRNA-Ser species tS(CGA) and tS(UGA); conserved among metazoans and fungi but there does not appear to be a homolog in plants; TRM44 is a non-essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016300 - tRNA (uracil) methyltransferase activity [Evidence IDA,IMP] [PMID 18025252]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA,IMP] [PMID 18025252]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm44p complement(3001322..3003025) Sugiyamaella lignohabitans 30034971 AWJ20_3000 CDS PHO85 NC_031674.1 3003613 3004356 D Cyclin-dependent kinase; has ten cyclin partners; involved in regulating the cellular response to nutrient levels and environmental conditions and progression through the cell cycle; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 16611745]; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 7973730]; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 7973731]; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 8108735]; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 9584169]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9853758]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 12407105]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 19823668]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 7973730]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 7973731]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 8108735]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 9584169]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI,IMP] [PMID 16964260]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 12077337]; GO_process: GO:0050849 - negative regulation of calcium-mediated signaling [Evidence IGI] [PMID 16455487]; GO_process: GO:0045719 - negative regulation of glycogen biosynthetic process [Evidence IMP] [PMID 9584169]; GO_process: GO:0016242 - negative regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0045936 - negative regulation of phosphate metabolic process [Evidence IGI] [PMID 3915785]; GO_process: GO:0043433 - negative regulation of sequence-specific DNA binding transcription factor activity [Evidence IGI] [PMID 12101234]; GO_process: GO:0043433 - negative regulation of sequence-specific DNA binding transcription factor activity [Evidence IMP] [PMID 16455487]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 3915785]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0016239 - positive regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 19823668]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 7973731]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 8108735]; GO_process: GO:0032878 - regulation of establishment or maintenance of cell polarity [Evidence IGI] [PMID 17853895]; GO_process: GO:0032880 - regulation of protein localization [Evidence IDA] [PMID 8539622]; GO_process: GO:0031647 - regulation of protein stability [Evidence IMP] [PMID 16508019]; GO_process: GO:0031647 - regulation of protein stability [Evidence IGI] [PMID 16611745]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 15738404]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 19823668]; cyclin-dependent serine/threonine-protein kinase PHO85 3003613..3004356 Sugiyamaella lignohabitans 30034975 AWJ20_3001 CDS SEC3 NC_031674.1 3005632 3009741 D Subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to sites of exocytosis prior to SNARE-mediated fusion; PtdIns[4,5]P2-binding protein that localizes to exocytic sites in a Rho1p-dependent, actin-independent manner, targeting and anchoring the exocyst to the plasma membrane with Exo70p; direct GTP Rho1p effector; required for ER inheritance; relocalizes away from bud neck upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11595741]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9491896]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11595741]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17717527]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 9491896]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11595741]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9491896]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9491896]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0017049 - GTP-Rho binding [Evidence IDA] [PMID 11283608]; GO_function: GO:0017049 - GTP-Rho binding [Evidence IPI] [PMID 11595741]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IDA] [PMID 18195105]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 7026045]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IMP] [PMID 12960429]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IGI,IMP] [PMID 15583030]; GO_process: GO:0001927 - exocyst assembly [Evidence IMP] [PMID 15583030]; GO_process: GO:0051601 - exocyst localization [Evidence IGI] [PMID 17717527]; GO_process: GO:0051601 - exocyst localization [Evidence IGI] [PMID 18946089]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 12913108]; GO_process: GO:0006887 - exocytosis [Evidence IDA] [PMID 15772160]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17717527]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 6996832]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Sec3p 3005632..3009741 Sugiyamaella lignohabitans 30034976 AWJ20_3002 CDS SUA7 NC_031674.1 3009932 3010978 R Transcription factor TFIIB; a general transcription factor required for transcription initiation and start site selection by RNA polymerase II; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15888545]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IDA,IPI] [PMID 7935466]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IEA]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA,IPI] [PMID 15888545]; GO_function: GO:0001129 - TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly [Evidence IDA,IMP] [PMID 10464320]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IDA,IMP] [PMID 10464320]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA,IMP] [PMID 10464320]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 9887099]; GO_process: GO:2000679 - positive regulation of transcription regulatory region DNA binding [Evidence IDA] [PMID 8132551]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001113 - transcriptional open complex formation at RNA polymerase II promoter [Evidence IMP] [PMID 19820686]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IMP] [PMID 19820686]; Sua7p complement(3009932..3010978) Sugiyamaella lignohabitans 30034977 AWJ20_3003 CDS NUG1 NC_031674.1 3011253 3012803 D GTPase that associates with nuclear 60S pre-ribosomes; required for export of 60S ribosomal subunits from the nucleus; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16803892]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IGI] [PMID 16803892]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 16803892]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 16803892]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12089522]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI,IMP] [PMID 11583615]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; RNA-binding GTPase NUG1 3011253..3012803 Sugiyamaella lignohabitans 30034978 AWJ20_3004 CDS PDR5 NC_031674.1 3013769 3018226 D Plasma membrane ATP-binding cassette (ABC) transporter; multidrug transporter actively regulated by Pdr1p; also involved in steroid transport, cation resistance, and cellular detoxification during exponential growth; PDR5 has a paralog, PDR15, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8810273]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008559 - xenobiotic-transporting ATPase activity [Evidence IDA] [PMID 21207971]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015893 - drug transport [Evidence TAS] [PMID 11421285]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046677 - response to antibiotic [Evidence IEA]; GO_process: GO:0046898 - response to cycloheximide [Evidence IEA]; GO_process: GO:0042493 - response to drug [Evidence TAS] [PMID 11421285]; GO_process: GO:0042493 - response to drug [Evidence IMP] [PMID 17881724]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette multidrug transporter PDR5 3013769..3018226 Sugiyamaella lignohabitans 30034979 AWJ20_3005 CDS SIP3 NC_031674.1 3018285 3021914 R Transcription cofactor; acts through interaction with DNA-bound Snf1p; C-terminal region has a putative leucine zipper motif; potential Cdc28p substrate; SIP3 has a paralog, YSP1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IDA] [PMID 8127709]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 8127709]; Sip3p complement(3018285..3021914) Sugiyamaella lignohabitans 30034980 AWJ20_3006 CDS AWJ20_3006 NC_031674.1 3022024 3022455 R uncharacterized protein complement(3022024..3022455) Sugiyamaella lignohabitans 30034981 AWJ20_3007 CDS AWJ20_3007 NC_031674.1 3023908 3024780 R uncharacterized protein complement(3023908..3024780) Sugiyamaella lignohabitans 30034982 AWJ20_3008 CDS AWJ20_3008 NC_031674.1 3027716 3032242 D uncharacterized protein 3027716..3032242 Sugiyamaella lignohabitans 30034983 AWJ20_3009 CDS AWJ20_3009 NC_031674.1 3032885 3033985 R uncharacterized protein complement(3032885..3033985) Sugiyamaella lignohabitans 30034984 AWJ20_3010 CDS AWJ20_3010 NC_031674.1 3034337 3035278 D uncharacterized protein 3034337..3035278 Sugiyamaella lignohabitans 30034986 AWJ20_3011 CDS SPT15 NC_031674.1 3039028 3039306 D TATA-binding protein; general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 8702872]; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 9632758]; GO_component: GO:0000500 - RNA polymerase I upstream activating factor complex [Evidence IDA] [PMID 9632758]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9818719]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_component: GO:0000126 - transcription factor TFIIIB complex [Evidence IDA] [PMID 1423590]; GO_component: GO:0000126 - transcription factor TFIIIB complex [Evidence IDA] [PMID 1458536]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 1736286]; GO_function: GO:0001179 - RNA polymerase I transcription factor binding [Evidence IDA,IPI] [PMID 8895657]; GO_function: GO:0001186 - RNA polymerase I transcription factor recruiting transcription factor activity [Evidence IDA,IPI] [PMID 8895657]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA,IPI] [PMID 12501245]; GO_function: GO:0000979 - RNA polymerase II core promoter sequence-specific DNA binding [Evidence IDA] [PMID 2677740]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0001016 - RNA polymerase III regulatory region DNA binding [Evidence IDA] [PMID 8662956]; GO_function: GO:0001026 - TFIIIB-type transcription factor activity [Evidence IC]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 19098311]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IDA] [PMID 1480467]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IMP] [PMID 1586947]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0070893 - transposon integration [Evidence IDA] [PMID 10882723]; TATA-binding protein 3039028..3039306 Sugiyamaella lignohabitans 30034987 AWJ20_3012 CDS SPT15 NC_031674.1 3039447 3039860 D TATA-binding protein; general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 8702872]; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 9632758]; GO_component: GO:0000500 - RNA polymerase I upstream activating factor complex [Evidence IDA] [PMID 9632758]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9818719]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_component: GO:0000126 - transcription factor TFIIIB complex [Evidence IDA] [PMID 1423590]; GO_component: GO:0000126 - transcription factor TFIIIB complex [Evidence IDA] [PMID 1458536]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 1736286]; GO_function: GO:0001179 - RNA polymerase I transcription factor binding [Evidence IDA,IPI] [PMID 8895657]; GO_function: GO:0001186 - RNA polymerase I transcription factor recruiting transcription factor activity [Evidence IDA,IPI] [PMID 8895657]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA,IPI] [PMID 12501245]; GO_function: GO:0000979 - RNA polymerase II core promoter sequence-specific DNA binding [Evidence IDA] [PMID 2677740]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0001016 - RNA polymerase III regulatory region DNA binding [Evidence IDA] [PMID 8662956]; GO_function: GO:0001026 - TFIIIB-type transcription factor activity [Evidence IC]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 19098311]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0070898 - RNA polymerase III transcriptional preinitiation complex assembly [Evidence IDA] [PMID 1480467]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IMP] [PMID 1586947]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0070893 - transposon integration [Evidence IDA] [PMID 10882723]; TATA-binding protein 3039447..3039860 Sugiyamaella lignohabitans 30034988 AWJ20_3013 CDS AWJ20_3013 NC_031674.1 3040674 3042521 D uncharacterized protein 3040674..3042521 Sugiyamaella lignohabitans 30034989 AWJ20_3014 CDS AWJ20_3014 NC_031674.1 3043558 3044511 D uncharacterized protein 3043558..3044511 Sugiyamaella lignohabitans 30034990 AWJ20_3015 CDS ADH3 NC_031674.1 3045043 3046092 R Mitochondrial alcohol dehydrogenase isozyme III; involved in the shuttling of mitochondrial NADH to the cytosol under anaerobic conditions and ethanol production; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 3550419]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IDA] [PMID 3550419]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 3546317]; GO_process: GO:0000947 - amino acid catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0006113 - fermentation [Evidence ISS] [PMID 3550419]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; alcohol dehydrogenase ADH3 complement(3045043..3046092) Sugiyamaella lignohabitans 30034991 AWJ20_3016 CDS AWJ20_3016 NC_031674.1 3048554 3050608 D uncharacterized protein 3048554..3050608 Sugiyamaella lignohabitans 30034992 AWJ20_3017 CDS AWJ20_3017 NC_031674.1 3051772 3053619 D uncharacterized protein 3051772..3053619 Sugiyamaella lignohabitans 30034993 AWJ20_3018 CDS LYS2 NC_031674.1 3053650 3057870 R Alpha aminoadipate reductase; catalyzes the reduction of alpha-aminoadipate to alpha-aminoadipate 6-semialdehyde, which is the fifth step in biosynthesis of lysine; activation requires posttranslational phosphopantetheinylation by Lys5p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence NAS] [PMID 3928261]; GO_function: GO:0004043 - L-aminoadipate-semialdehyde dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004043 - L-aminoadipate-semialdehyde dehydrogenase activity [Evidence IDA] [PMID 10320345]; GO_function: GO:0004043 - L-aminoadipate-semialdehyde dehydrogenase activity [Evidence IMP] [PMID 3023949]; GO_function: GO:0004043 - L-aminoadipate-semialdehyde dehydrogenase activity [Evidence IMP] [PMID 4401608]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0031177 - phosphopantetheine binding [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IDA] [PMID 10320345]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IMP] [PMID 3023949]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IMP] [PMID 4401608]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; L-aminoadipate-semialdehyde dehydrogenase complement(3053650..3057870) Sugiyamaella lignohabitans 30034994 AWJ20_3019 CDS NOT3 NC_031674.1 3059321 3061285 D Subunit of CCR4-NOT global transcriptional regulator; involved intranscription initiation and elongation and in mRNA degradation; conserved lysine in human homolog of Not3p and Not5p is mutated in cancers; GO_component: GO:0030015 - CCR4-NOT core complex [Evidence IPI] [PMID 10490603]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11889048]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 16926149]; GO_process: GO:0000289 - nuclear-transcribed mRNA poly(A) tail shortening [Evidence IDA] [PMID 11889048]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA,IPI] [PMID 21406554]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 16926149]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 10490603]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; CCR4-NOT core subunit NOT3 3059321..3061285 Sugiyamaella lignohabitans 30034995 AWJ20_3020 CDS TKL1 NC_031674.1 3061550 3063490 R Transketolase; catalyzes conversion of xylulose-5-phosphate and ribose-5-phosphate to sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate in the pentose phosphate pathway; needed for synthesis of aromatic amino acids; TKL1 has a paralog, TKL2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence ISS] [PMID 2843500]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0004802 - transketolase activity [Evidence IEA,IEA]; GO_function: GO:0004802 - transketolase activity [Evidence IMP,ISS] [PMID 8226984]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IMP] [PMID 8299150]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence TAS] [PMID 8534086]; transketolase TKL1 complement(3061550..3063490) Sugiyamaella lignohabitans 30034997 AWJ20_3021 CDS OPY2 NC_031674.1 3065599 3067581 R Protein OPY2 complement(3065599..3067581) Sugiyamaella lignohabitans 30034998 AWJ20_3022 CDS AWJ20_3022 NC_031674.1 3068662 3069573 D uncharacterized protein 3068662..3069573 Sugiyamaella lignohabitans 30034999 AWJ20_3023 CDS MET18 NC_031674.1 3069671 3072418 R Component of cytosolic iron-sulfur protein assembly (CIA) machinery; acts at a late step of Fe-S cluster assembly; forms the CIA targeting complex with Cia1p and Cia2p that directs Fe-S cluster incorporation into a subset of proteins involved in methionine biosynthesis, DNA replication and repair, transcription, and telomere maintenance; ortholog of human MMS19; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 22678361]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 22678362]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Met18p complement(3069671..3072418) Sugiyamaella lignohabitans 30035000 AWJ20_3024 CDS CKA1 NC_031674.1 3073955 3074638 D Alpha catalytic subunit of casein kinase 2 (CK2); a Ser/Thr protein kinase with roles in cell growth and proliferation; CK2, comprised of CKA1, CKA2, CKB1 and CKB2, has many substrates including transcription factors and all RNA polymerases; regulates Fkh1p-mediated donor preference during mating-type switching; GO_component: GO:0034456 - UTP-C complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IDA] [PMID 8135547]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 8226802]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IDA] [PMID 11551505]; GO_process: GO:0007535 - donor selection [Evidence IGI] [PMID 22496671]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 16607517]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16952051]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IDA] [PMID 11551505]; GO_process: GO:0006359 - regulation of transcription from RNA polymerase III promoter [Evidence IDA] [PMID 11551505]; casein kinase 2 catalytic subunit CKA1 3073955..3074638 Sugiyamaella lignohabitans 30035001 AWJ20_3025 CDS CTF18 NC_031674.1 3074934 3077090 D Subunit of a complex with Ctf8p; shares some subunits with Replication Factor C and is required for sister chromatid cohesion; may have overlapping functions with Rad24p in the DNA damage replication checkpoint; GO_component: GO:0031390 - Ctf18 RFC-like complex [Evidence IPI] [PMID 11389843]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16962805]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 20980819]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 17636314]; GO_process: GO:0035753 - maintenance of DNA trinucleotide repeats [Evidence IMP] [PMID 21347277]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 11287619]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 11389843]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI] [PMID 17483413]; Ctf18p 3074934..3077090 Sugiyamaella lignohabitans 30035002 AWJ20_3026 CDS ATG27 NC_031674.1 3079115 3080056 D Type I membrane protein involved in autophagy and the Cvt pathway; may be involved in membrane delivery to the phagophore assembly site; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA,ISS] [PMID 12186856]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17135291]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 17135291]; GO_component: GO:0034045 - pre-autophagosomal structure membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16107716]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 12186856]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 17135291]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 17135291]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 17135291]; GO_process: GO:0034497 - protein localization to pre-autophagosomal structure [Evidence IMP] [PMID 17135291]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016050 - vesicle organization [Evidence IMP] [PMID 12186856]; Atg27p 3079115..3080056 Sugiyamaella lignohabitans 30035003 AWJ20_3027 CDS AWJ20_3027 NC_031674.1 3080201 3080536 R uncharacterized protein complement(3080201..3080536) Sugiyamaella lignohabitans 30035004 AWJ20_3028 CDS ATP12 NC_031674.1 3080818 3081714 D Assembly factor for the F1 sector of mitochondrial F1F0 ATP synthase; conserved protein; required for the assembly of alpha and beta subunits into the F1 sector of the mitochondrial F1F0 ATP synthase; mutation of human ATP12 reduces active ATP synthase levels and is associated with the disorder ATPAF2 deficiency; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 1826907]; GO_function: GO:0019904 - protein domain specific binding [Evidence IPI] [PMID 10747017]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IPI] [PMID 10747017]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IMP] [PMID 2142305]; GO_process: GO:0043461 - proton-transporting ATP synthase complex assembly [Evidence IEA]; Atp12p 3080818..3081714 Sugiyamaella lignohabitans 30035005 AWJ20_3029 CDS AWJ20_3029 NC_031674.1 3086503 3087237 D DASH complex subunit DUO1 3086503..3087237 Sugiyamaella lignohabitans 30035006 AWJ20_3030 CDS TUB2 NC_031674.1 3088365 3089408 D Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules; mutation in human ortholog is associated with congenital fibrosis of the extraocular muscles (CFEOM) with polymicrogyria; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005828 - kinetochore microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005874 - microtubule [Evidence IEA,IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0043234 - protein complex [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_component: GO:0045298 - tubulin complex [Evidence IDA,IPI] [PMID 9488492]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0045143 - homologous chromosome segregation [Evidence IC] [PMID 9488492]; GO_process: GO:0007017 - microtubule-based process [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IC] [PMID 9488492]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IC] [PMID 9488492]; GO_process: GO:0051258 - protein polymerization [Evidence IEA]; GO_process: GO:0046677 - response to antibiotic [Evidence IEA]; beta-tubulin 3088365..3089408 Sugiyamaella lignohabitans 30035008 AWJ20_3031 CDS PYC2 NC_031674.1 3089621 3092842 R Pyruvate carboxylase isoform; cytoplasmic enzyme that converts pyruvate to oxaloacetate; differentially regulated than isoform Pyc1p; mutations in the human homolog are associated with lactic acidosis; PYC2 has a paralog, PYC1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 196563]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 2665820]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004736 - pyruvate carboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004736 - pyruvate carboxylase activity [Evidence IMP] [PMID 2039506]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA,IEA,IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 8185321]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; pyruvate carboxylase 2 complement(3089621..3092842) Sugiyamaella lignohabitans 30035009 AWJ20_3032 CDS NAM7 NC_031674.1 3095778 3098963 R ATP-dependent RNA helicase of the SFI superfamily; involved in nonsense mediated mRNA decay; required for efficient translation termination at nonsense codons and targeting of NMD substrates to P-bodies; binds to the small ribosomal subunit via an interaction with Rps26; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14763985]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005844 - polysome [Evidence TAS] [PMID 10098411]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence TAS] [PMID 10322435]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence TAS] [PMID 10322435]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence TAS] [PMID 10098411]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0043024 - ribosomal small subunit binding [Evidence IDA] [PMID 23801788]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 23390378]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 16157874]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence IMP] [PMID 16777600]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 16285926]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI] [PMID 12769863]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA,IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence TAS] [PMID 10098411]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA,IMP,IPI] [PMID 18676617]; GO_process: GO:0006449 - regulation of translational termination [Evidence TAS] [PMID 10098411]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 15388879]; ATP-dependent RNA helicase NAM7 complement(3095778..3098963) Sugiyamaella lignohabitans 30035010 AWJ20_3033 CDS AWJ20_3033 NC_031674.1 3099455 3099802 R uncharacterized protein complement(3099455..3099802) Sugiyamaella lignohabitans 30035011 AWJ20_3034 CDS GAR1 NC_031674.1 3100758 3101381 D Protein component of the H/ACA snoRNP pseudouridylase complex; involved in the modification and cleavage of the 18S pre-rRNA; GO_component: GO:0031429 - box H/ACA snoRNP complex [Evidence IEA]; GO_component: GO:0031429 - box H/ACA snoRNP complex [Evidence IPI] [PMID 2898766]; GO_component: GO:0031429 - box H/ACA snoRNP complex [Evidence IPI] [PMID 9843512]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 1531632]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005732 - small nucleolar ribonucleoprotein complex [Evidence IPI] [PMID 1531632]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0034513 - box H/ACA snoRNA binding [Evidence IPI] [PMID 9556561]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence TAS] [PMID 10690410]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; GO_process: GO:0031120 - snRNA pseudouridine synthesis [Evidence IDA] [PMID 15962000]; H/ACA snoRNP pseudouridylase subunit GAR1 3100758..3101381 Sugiyamaella lignohabitans 30035012 AWJ20_3035 CDS AWJ20_3035 NC_031674.1 3101597 3102463 R uncharacterized protein complement(3101597..3102463) Sugiyamaella lignohabitans 30035013 AWJ20_3036 CDS AWJ20_3036 NC_031674.1 3103323 3104456 R uncharacterized protein complement(3103323..3104456) Sugiyamaella lignohabitans 30035014 AWJ20_3037 CDS AWJ20_3037 NC_031674.1 3112558 3115179 D uncharacterized protein 3112558..3115179 Sugiyamaella lignohabitans 30035015 AWJ20_3038 CDS EDE1 NC_031674.1 3115778 3120304 D Endocytic protein; involved in a network of interactions with other endocytic proteins, binds membranes in a ubiquitin-dependent manner, may also bind ubiquitinated membrane-associated proteins; interacts with Cmk2 and functions upstream of CMK2 in regulating non-apoptotic cell death; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10954428]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11452010]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11452010]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 16563434]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 10954428]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 16582425]; Ede1p join(3115778..3115814,3115959..3120304) Sugiyamaella lignohabitans 30035016 AWJ20_3039 CDS NNF1 NC_031674.1 3120428 3121849 R MIND complex subunit NNF1 complement(3120428..3121849) Sugiyamaella lignohabitans 30035017 AWJ20_3040 CDS SEC17 NC_031674.1 3122807 3123325 D Alpha-SNAP cochaperone; SNARE-complex adaptor for Sec18 (NSF) during the disassembly of postfusion cis-SNARE complexes; stimulates the ATPase activity of Sec18p; peripheral membrane protein required for vesicular transport between ER and Golgi, the 'priming' step in homotypic vacuole fusion, and autophagy; similar to mammalian alpha-SNAP; GO_component: GO:0031201 - SNARE complex [Evidence IPI] [PMID 10397773]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8636207]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 1601878]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 10387016]; GO_function: GO:0005483 - soluble NSF attachment protein activity [Evidence IPI] [PMID 10387016]; GO_function: GO:0005483 - soluble NSF attachment protein activity [Evidence IDA] [PMID 11994317]; GO_process: GO:0035494 - SNARE complex disassembly [Evidence IDA] [PMID 18650938]; GO_process: GO:0035494 - SNARE complex disassembly [Evidence IDA] [PMID 9425154]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 11694599]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA] [PMID 8670830]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA] [PMID 9685264]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IDA] [PMID 1601878]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sec17p 3122807..3123325 Sugiyamaella lignohabitans 30035019 AWJ20_3041 CDS CPA2 NC_031674.1 3123840 3127268 D Large subunit of carbamoyl phosphate synthetase; carbamoyl phosphate synthetase catalyzes a step in the synthesis of citrulline, an arginine precursor; GO_component: GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IDA] [PMID 206535]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IMP] [PMID 6358221]; GO_function: GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 8626695]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IMP] [PMID 8626695]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; carbamoyl-phosphate synthase (glutamine-hydrolyzing) CPA2 3123840..3127268 Sugiyamaella lignohabitans 30035020 AWJ20_3042 CDS SPT20 NC_031674.1 3128757 3130418 D Subunit of the SAGA transcriptional regulatory complex; involved in maintaining the integrity of the complex; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; GO_component: GO:0000124 - SAGA complex [Evidence IEA]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9224714]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IEA]; GO_function: GO:0003712 - transcription cofactor activity [Evidence IGI,IMP,IPI] [PMID 8649430]; GO_process: GO:0030969 - UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 10652329]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Spt20p 3128757..3130418 Sugiyamaella lignohabitans 30035021 AWJ20_3043 CDS AWJ20_3043 NC_031674.1 3131045 3132865 D uncharacterized protein 3131045..3132865 Sugiyamaella lignohabitans 30035022 AWJ20_3044 CDS AHP1 NC_031674.1 3133710 3134279 D Thiol-specific peroxiredoxin; reduces hydroperoxides to protect against oxidative damage; function in vivo requires covalent conjugation to Urm1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10681558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP,ISS] [PMID 10681558]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 10681558]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0010038 - response to metal ion [Evidence IMP] [PMID 12270680]; Ahp1p 3133710..3134279 Sugiyamaella lignohabitans 30035023 AWJ20_3045 CDS AWJ20_3045 NC_031674.1 3134505 3135321 R uncharacterized protein complement(join(3134505..3135071,3135130..3135321)) Sugiyamaella lignohabitans 30035024 AWJ20_3046 CDS DCP1 NC_031674.1 3135695 3136180 D Subunit of the Dcp1p-Dcp2p decapping enzyme complex; decapping complex removes the 5' cap structure from mRNAs prior to their degradation; enhances the activity of catalytic subunit Dcp2p; regulated by DEAD box protein Dhh1p; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23706738]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA,IMP] [PMID 12730603]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23509072]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23706738]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 16341225]; GO_function: GO:0050072 - m7G(5')pppN diphosphatase activity [Evidence IDA] [PMID 16341225]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 11139489]; GO_process: GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA [Evidence IDA] [PMID 11139489]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA]; Dcp1p 3135695..3136180 Sugiyamaella lignohabitans 30035025 AWJ20_3047 CDS HEL1 NC_031674.1 3136970 3138547 D E3 ubiquitin-protein ligase HEL1 3136970..3138547 Sugiyamaella lignohabitans 30035026 AWJ20_3048 CDS ALR2 NC_031674.1 3138828 3140429 R Probable Mg(2+) transporter; overexpression confers increased tolerance to Al(3+) and Ga(3+) ions; plays a role in regulating Ty1 transposition; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP] [PMID 9430719]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 9430719]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 9430719]; GO_process: GO:0015693 - magnesium ion transport [Evidence IDA] [PMID 12167543]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 9430719]; GO_process: GO:0006810 - transport [Evidence IEA]; putative Mg(2+) transporter ALR2 complement(3138828..3140429) Sugiyamaella lignohabitans 30035027 AWJ20_3049 CDS EMW1 NC_031674.1 3142860 3145505 D Essential conserved protein with a role in cell wall integrity; contains six TPR (tetratricopeptide repeat) domains clustered in the C-terminal region; conditional mutant is suppressed by overexpression of GFA1; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21273246]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21273246]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 21273246]; Emw1p 3142860..3145505 Sugiyamaella lignohabitans 30035028 AWJ20_3050 CDS AWJ20_3050 NC_031674.1 3145596 3146546 R uncharacterized protein complement(3145596..3146546) Sugiyamaella lignohabitans 30035030 AWJ20_3051 CDS AWJ20_3051 NC_031674.1 3148043 3150580 D uncharacterized protein 3148043..3150580 Sugiyamaella lignohabitans 30035031 AWJ20_3052 CDS AWJ20_3052 NC_031674.1 3150811 3153075 R uncharacterized protein complement(3150811..3153075) Sugiyamaella lignohabitans 30035032 AWJ20_3053 CDS AWJ20_3053 NC_031674.1 3154441 3154704 D Mitochondrial ribosomal protein of the small subunit 3154441..3154704 Sugiyamaella lignohabitans 30035033 AWJ20_3054 CDS CCH1 NC_031674.1 3155570 3158614 R Voltage-gated high-affinity calcium channel; involved in calcium influx in response to some environmental stresses as well as exposure to mating pheromones; interacts and co-localizes with Mid1p, suggesting Cch1p and Mid1p function together; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10958666]; GO_function: GO:0005262 - calcium channel activity [Evidence IEA]; GO_function: GO:0005262 - calcium channel activity [Evidence IDA] [PMID 10958666]; GO_function: GO:0005262 - calcium channel activity [Evidence IMP] [PMID 9343395]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005245 - voltage-gated calcium channel activity [Evidence ISS] [PMID 9343395]; GO_function: GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IDA] [PMID 10958666]; GO_process: GO:0006816 - calcium ion transport [Evidence IMP] [PMID 9343395]; GO_process: GO:0006811 - ion transport [Evidence IEA,IEA]; GO_process: GO:0034765 - regulation of ion transmembrane transport [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cch1p complement(3155570..3158614) Sugiyamaella lignohabitans 30035034 AWJ20_3055 CDS CCH1 NC_031674.1 3159658 3161730 R Voltage-gated high-affinity calcium channel; involved in calcium influx in response to some environmental stresses as well as exposure to mating pheromones; interacts and co-localizes with Mid1p, suggesting Cch1p and Mid1p function together; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10958666]; GO_function: GO:0005262 - calcium channel activity [Evidence IEA]; GO_function: GO:0005262 - calcium channel activity [Evidence IDA] [PMID 10958666]; GO_function: GO:0005262 - calcium channel activity [Evidence IMP] [PMID 9343395]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005245 - voltage-gated calcium channel activity [Evidence ISS] [PMID 9343395]; GO_function: GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IDA] [PMID 10958666]; GO_process: GO:0006816 - calcium ion transport [Evidence IMP] [PMID 9343395]; GO_process: GO:0006811 - ion transport [Evidence IEA,IEA]; GO_process: GO:0034765 - regulation of ion transmembrane transport [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cch1p complement(3159658..3161730) Sugiyamaella lignohabitans 30035035 AWJ20_3056 CDS AWJ20_3056 NC_031674.1 3162607 3163599 D uncharacterized protein 3162607..3163599 Sugiyamaella lignohabitans 30035036 AWJ20_3057 CDS ADE17 NC_031674.1 3163760 3165541 R Enzyme of 'de novo' purine biosynthesis; contains both 5-aminoimidazole-4-carboxamide ribonucleotide transformylase and inosine monophosphate cyclohydrolase activities; ADE17 has a paralog, ADE16, that arose from the whole genome duplication; ade16 ade17 mutants require adenine and histidine; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10877846]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003937 - IMP cyclohydrolase activity [Evidence IEA,IEA]; GO_function: GO:0003937 - IMP cyclohydrolase activity [Evidence IDA] [PMID 10877846]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity [Evidence IDA] [PMID 10877846]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IDA,IMP] [PMID 10877846]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IDA,IMP] [PMID 10877846]; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase ADE17 complement(3163760..3165541) Sugiyamaella lignohabitans 30035037 AWJ20_3058 CDS RPL15B NC_031674.1 3168412 3169023 R Ribosomal 60S subunit protein L15B; binds to 5.8 S rRNA; homologous to mammalian ribosomal protein L15, no bacterial homolog; RPL15B has a paralog, RPL15A, that arose from the whole genome duplication; relocalizes from nucleus to nucleolus upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 6337137]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 6814480]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L15B complement(3168412..3169023) Sugiyamaella lignohabitans 30035038 AWJ20_3059 CDS AWJ20_3059 NC_031674.1 3179400 3181037 R uncharacterized protein complement(3179400..3181037) Sugiyamaella lignohabitans 30035039 AWJ20_3060 CDS AWJ20_3060 NC_031674.1 3183191 3185182 D uncharacterized protein 3183191..3185182 Sugiyamaella lignohabitans 30035041 AWJ20_3061 CDS NIF3 NC_031674.1 3185259 3185930 R hypothetical protein; similar to Listeria monocytogenes major sigma factor (rpoD gene product); the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17034789]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17034789]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0035998 - 7,8-dihydroneopterin 3'-triphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Nif3p complement(3185259..3185930) Sugiyamaella lignohabitans 30035042 AWJ20_3062 CDS TEL2 NC_031674.1 3186900 3189686 R Subunit of the ASTRA complex, involved in chromatin remodeling; subunit of the telomere cap complex DNA-binding protein specific to single-stranded yeast telomeric DNA repeats, required for telomere length regulation and telomere position effect; involved in the stability or biogenesis of PIKKs such as TORC1; GO_component: GO:0070209 - ASTRA complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0000784 - nuclear chromosome, telomeric region [Evidence IDA] [PMID 9490802]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IDA] [PMID 10525964]; GO_process: GO:0034502 - protein localization to chromosome [Evidence IMP] [PMID 18334620]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 3513174]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IMP] [PMID 8649421]; Tel2p complement(3186900..3189686) Sugiyamaella lignohabitans 30035043 AWJ20_3064 CDS MET17 NC_031674.1 3190831 3192126 D O-acetyl homoserine-O-acetyl serine sulfhydrylase; required for Methionine and cysteine biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003961 - O-acetylhomoserine aminocarboxypropyltransferase activity [Evidence IEA]; GO_function: GO:0003961 - O-acetylhomoserine aminocarboxypropyltransferase activity [Evidence TAS] [PMID 3299001]; GO_function: GO:0003961 - O-acetylhomoserine aminocarboxypropyltransferase activity [Evidence IDA] [PMID 7765825]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004124 - cysteine synthase activity [Evidence IEA]; GO_function: GO:0004124 - cysteine synthase activity [Evidence IDA] [PMID 7765825]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0071266 - 'de novo' L-methionine biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence TAS] [PMID 15042590]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0006555 - methionine metabolic process [Evidence IMP] [PMID 1101032]; bifunctional cysteine synthase/O-acetylhomoserine aminocarboxypropyltransferase MET17 3190831..3192126 Sugiyamaella lignohabitans 30035045 AWJ20_3065 CDS AWJ20_3065 NC_031674.1 3191185 3191523 R uncharacterized protein complement(3191185..3191523) Sugiyamaella lignohabitans 30035046 AWJ20_3066 CDS BSC6 NC_031674.1 3192294 3193679 R hypothetical protein with 8 putative transmembrane segments; ORF exhibits genomic organization compatible with a translational readthrough-dependent mode of expression; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Bsc6p complement(3192294..3193679) Sugiyamaella lignohabitans 30035047 AWJ20_3067 CDS ABP1 NC_031674.1 3195101 3197494 D Actin-binding protein of the cortical actin cytoskeleton; important for activation of the Arp2/3 complex that plays a key role actin in cytoskeleton organization; inhibits barbed-end actin filament elongation; phosphorylation within its Proline-Rich Regio, mediated by Cdc28p and Pho85p, protects Abp1p from proteolysis mediated by its own PEST sequences; mammalian homologue of HIP-55 (hematopoietic progenitor kinase 1 [HPK1]-interacting protein of 55 kDa); GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 3060468]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 8163554]; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 11950888]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 3060468]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence IMP] [PMID 18177206]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence IMP] [PMID 2405279]; GO_process: GO:0051016 - barbed-end actin filament capping [Evidence IMP] [PMID 23333351]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 11668184]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 15798181]; Abp1p join(3195101..3195260,3195471..3197494) Sugiyamaella lignohabitans 30035048 AWJ20_3068 CDS AWJ20_3068 NC_031674.1 3197608 3198534 R uncharacterized protein complement(3197608..3198534) Sugiyamaella lignohabitans 30035049 AWJ20_3069 CDS RPP0 NC_031674.1 3200014 3200952 R Conserved ribosomal protein P0 of the ribosomal stalk; involved in interaction between translational elongation factors and the ribosome; phosphorylated on serine 302; homologous to mammalian ribosomal protein LP0 and bacterial L10; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19797078]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 22096102]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 19797079]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0070180 - large ribosomal subunit rRNA binding [Evidence IDA] [PMID 16164560]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 22096102]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 8195220]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 8195220]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA]; ribosomal protein P0 complement(3200014..3200952) Sugiyamaella lignohabitans 30035050 AWJ20_3070 CDS AWJ20_3070 NC_031674.1 3200429 3200761 D uncharacterized protein 3200429..3200761 Sugiyamaella lignohabitans 30035052 AWJ20_3071 CDS GFD2 NC_031674.1 3201468 3202871 R hypothetical protein; identified as a high-copy suppressor of a dbp5 mutation; GFD2 has a paralog, YDR514C, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Gfd2p complement(3201468..3202871) Sugiyamaella lignohabitans 30035053 AWJ20_3072 CDS CDC28 NC_031674.1 3208497 3209279 D Cyclin-dependent kinase (CDK) catalytic subunit; master regulator of mitotic and meiotic cell cycles; alternately associates with G1 (CLNs), S and G2/M (CLBs) phase cyclins, which provide substrate specificity; regulates cell cycle and basal transcription, chromosome duplication and segregation, lipid biosynthesis, membrane trafficking, polarized growth, and morphogenesis; abundance increases in DNA replication stress; transcript induction in osmostress involves antisense RNA; GO_component: GO:0000235 - astral microtubule [Evidence IDA] [PMID 15256500]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12554645]; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IDA] [PMID 1849458]; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IDA] [PMID 2142620]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 3312233]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17560371]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14685274]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 12554645]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IDA] [PMID 22689984]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0004693 - cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 2142620]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 20855529]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 22689984]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 23314252]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 24319056]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IMP] [PMID 22689984]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 20855529]; GO_process: GO:0000706 - meiotic DNA double-strand break processing [Evidence IGI] [PMID 20150422]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:2001033 - negative regulation of double-strand break repair via nonhomologous end joining [Evidence IMP] [PMID 19699692]; GO_process: GO:0051447 - negative regulation of meiotic cell cycle [Evidence IMP] [PMID 12081645]; GO_process: GO:0045930 - negative regulation of mitotic cell cycle [Evidence IDA] [PMID 10074450]; GO_process: GO:0045875 - negative regulation of sister chromatid cohesion [Evidence IMP] [PMID 21549314]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IMP] [PMID 12081645]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IDA,IMP] [PMID 14993267]; GO_process: GO:0018105 - peptidyl-serine phosphorylation [Evidence IDA] [PMID 23314252]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 22689984]; GO_process: GO:0051446 - positive regulation of meiotic cell cycle [Evidence IDA,IMP] [PMID 16814718]; GO_process: GO:0051446 - positive regulation of meiotic cell cycle [Evidence IMP] [PMID 2680756]; GO_process: GO:0045931 - positive regulation of mitotic cell cycle [Evidence IMP] [PMID 2165600]; GO_process: GO:0045931 - positive regulation of mitotic cell cycle [Evidence IMP] [PMID 7002718]; GO_process: GO:0010571 - positive regulation of nuclear cell cycle DNA replication [Evidence IMP] [PMID 12783856]; GO_process: GO:0010571 - positive regulation of nuclear cell cycle DNA replication [Evidence IDA,IMP] [PMID 14747467]; GO_process: GO:0010571 - positive regulation of nuclear cell cycle DNA replication [Evidence IMP] [PMID 4580573]; GO_process: GO:0010696 - positive regulation of spindle pole body separation [Evidence IGI,IMP] [PMID 16688214]; GO_process: GO:0010696 - positive regulation of spindle pole body separation [Evidence IMP] [PMID 8887667]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22689984]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA,IGI] [PMID 1652372]; GO_process: GO:0010898 - positive regulation of triglyceride catabolic process [Evidence IGI,IMP] [PMID 19150427]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0010568 - regulation of budding cell apical bud growth [Evidence IGI,IMP] [PMID 17417630]; GO_process: GO:0010569 - regulation of double-strand break repair via homologous recombination [Evidence IMP] [PMID 15496928]; GO_process: GO:0010570 - regulation of filamentous growth [Evidence IMP] [PMID 9891070]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 19188495]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 20702586]; GO_process: GO:0007130 - synaptonemal complex assembly [Evidence IMP] [PMID 20825495]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 22767578]; cyclin-dependent serine/threonine-protein kinase CDC28 3208497..3209279 Sugiyamaella lignohabitans 30035054 AWJ20_3073 CDS JLP1 NC_031674.1 3210242 3211429 D Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 3210242..3211429 Sugiyamaella lignohabitans 30035055 AWJ20_3074 CDS SKG3 NC_031674.1 3214946 3217912 D hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck; potential Cdc28p substrate; similar to Skg4p; relocalizes from bud neck to cytoplasm upon DNA replication stress; SKG3 has a paralog, CAF120, that arose from the whole genome duplication; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Skg3p 3214946..3217912 Sugiyamaella lignohabitans 30035056 AWJ20_3075 CDS RNR2 NC_031674.1 3219157 3220383 D Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits; RNR2 has a paralog, RNR4, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12732713]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9315670]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12732713]; GO_component: GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IDA] [PMID 10716984]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 10535923]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 10716984]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0009186 - deoxyribonucleoside diphosphate metabolic process [Evidence IEA]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IDA] [PMID 10535923]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IDA] [PMID 5459124]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; ribonucleotide-diphosphate reductase subunit RNR2 3219157..3220383 Sugiyamaella lignohabitans 30035057 AWJ20_3076 CDS SWI6 NC_031674.1 3220707 3223418 R transcriptional regulator SWI6 complement(3220707..3223418) Sugiyamaella lignohabitans 30035058 AWJ20_3077 CDS VTA1 NC_031674.1 3224314 3225455 D Multivesicular body (MVB) protein; involved in endosomal protein sorting; regulates Vps4p activity by promoting its oligomerization; has an N-terminal Vps60- and Did2- binding domain, a linker region, and a C-terminal Vps4p binding domain; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 14562095]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IDA] [PMID 16505166]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005771 - multivesicular body [Evidence IDA] [PMID 14701806]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA,IMP] [PMID 16505166]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 16601096]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP,IPI] [PMID 12953057]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 16505166]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0032461 - positive regulation of protein oligomerization [Evidence IDA] [PMID 16505166]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vta1p join(3224314..3224428,3224485..3225455) Sugiyamaella lignohabitans 30035059 AWJ20_3078 CDS SUI2 NC_031674.1 3229597 3230532 D Alpha subunit of the translation initiation factor eIF2; eIF2 is involved in identification of the start codon; phosphorylation of Ser51 is required for regulation of translation by inhibiting the exchange of GDP for GTP; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IDA] [PMID 17242201]; GO_component: GO:0005850 - eukaryotic translation initiation factor 2 complex [Evidence IEA]; GO_component: GO:0005850 - eukaryotic translation initiation factor 2 complex [Evidence IMP,ISS] [PMID 2649894]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_component: GO:0005840 - ribosome [Evidence TAS] [PMID 9841679]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence TAS] [PMID 9841679]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence TAS] [PMID 9841679]; translation initiation factor eIF2 subunit alpha 3229597..3230532 Sugiyamaella lignohabitans 30035060 AWJ20_3079 CDS AWJ20_3079 NC_031674.1 3231101 3233791 D uncharacterized protein 3231101..3233791 Sugiyamaella lignohabitans 30035061 AWJ20_3080 CDS MHO1 NC_031674.1 3234762 3235421 D hypothetical protein; inhibits haploid invasive growth when overexpressed; synthetically lethal with phospholipase C (PLC1); expression induced by mild heat-stress on a non-fermentable carbon source, upon entry into stationary phase and upon nitrogen deprivation; repressed by inosine and choline in an Opi1p-dependent manner; highly conserved from bacteria to human; Memo, the human homolog, is an ErbB2 interacting protein with an essential function in cell motility; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22412880]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22412880]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mho1p 3234762..3235421 Sugiyamaella lignohabitans 30035063 AWJ20_3081 CDS APL1 NC_031674.1 3236205 3238370 D Beta-adaptin; large subunit of the clathrin associated protein complex (AP-2); involved in vesicle mediated transport; similar to mammalian beta-chain of the clathrin associated protein complex; GO_component: GO:0030122 - AP-2 adaptor complex [Evidence IDA] [PMID 10564262]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0030139 - endocytic vesicle [Evidence IDA] [PMID 22190733]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IC] [PMID 22190733]; Apl1p 3236205..3238370 Sugiyamaella lignohabitans 30035064 AWJ20_3082 CDS HRQ1 NC_031674.1 3238452 3241778 R 3'-5' DNA helicase that has DNA strand annealing activity; helicase activity is stimulated by fork structure and 3'-tail length of substrates; acts with Rad4p in nucleotide-excision repair; belongs to the widely conserved RecQ family of proteins which are involved in maintaining genomic integrity; similar to the human RecQ4p implicated in Rothmund-Thomson syndrome (RTS); GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 23026052]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IDA] [PMID 23026052]; GO_process: GO:0000733 - DNA strand renaturation [Evidence IDA] [PMID 23026052]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IGI,IPI] [PMID 24682993]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hrq1p complement(3238452..3241778) Sugiyamaella lignohabitans 30035065 AWJ20_3083 CDS SSK1 NC_031674.1 3241971 3244145 R Cytoplasmic response regulator; part of a two-component signal transducer that mediates osmosensing via a phosphorelay mechanism; required for mitophagy; dephosphorylated form is degraded by the ubiquitin-proteasome system; potential Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14665464]; GO_function: GO:0031435 - mitogen-activated protein kinase kinase kinase binding [Evidence IPI] [PMID 9482735]; GO_function: GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO_function: GO:0000156 - phosphorelay response regulator activity [Evidence IMP] [PMID 8183345]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA] [PMID 18573873]; GO_function: GO:0030295 - protein kinase activator activity [Evidence IDA,IMP] [PMID 9482735]; GO_process: GO:0000167 - activation of MAPKKK activity involved in osmosensory signaling pathway [Evidence IMP] [PMID 18573873]; GO_process: GO:0000167 - activation of MAPKKK activity involved in osmosensory signaling pathway [Evidence IGI] [PMID 9482735]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0007234 - osmosensory signaling via phosphorelay pathway [Evidence IDA] [PMID 8808622]; GO_process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA,IEA]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IMP] [PMID 19633059]; GO_process: GO:0031954 - positive regulation of protein autophosphorylation [Evidence IDA] [PMID 9482735]; mitogen-activated protein kinase kinase kinase SSK1 complement(3241971..3244145) Sugiyamaella lignohabitans 30035066 AWJ20_3084 CDS HMS1 NC_031674.1 3245037 3248081 R bHLH protein with similarity to myc-family transcription factors; overexpression confers hyperfilamentous growth and suppresses the pseudohyphal filamentation defect of a diploid mep1 mep2 homozygous null mutant; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence ISS] [PMID 10710415]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 9832522]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hms1p complement(3245037..3248081) Sugiyamaella lignohabitans 30035067 AWJ20_3085 CDS UBC4 NC_031674.1 3251457 3251789 D Ubiquitin-conjugating enzyme (E2); key E2 partner with Ubc1p for the anaphase-promoting complex (APC); mediates degradation of abnormal or excess proteins, including calmodulin and histone H3; regulates levels of DNA Polymerase-{alpha} to promote efficient and accurate DNA replication; interacts with many SCF ubiquitin protein ligases; component of the cellular stress response; UBC4 has a paralog, UBC5, that arose from the whole genome duplication; GO_component: GO:0000502 - proteasome complex [Evidence IPI] [PMID 10848595]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 11788821]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA,IMP] [PMID 21357418]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 2154373]; GO_process: GO:0034605 - cellular response to heat [Evidence IDA] [PMID 2154373]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IDA] [PMID 8391479]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA] [PMID 2154373]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 16926149]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IMP] [PMID 11788821]; E2 ubiquitin-conjugating protein UBC4 3251457..3251789 Sugiyamaella lignohabitans 30035068 AWJ20_3086 CDS EDE1 NC_031674.1 3253870 3257805 D Endocytic protein; involved in a network of interactions with other endocytic proteins, binds membranes in a ubiquitin-dependent manner, may also bind ubiquitinated membrane-associated proteins; interacts with Cmk2 and functions upstream of CMK2 in regulating non-apoptotic cell death; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10954428]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11452010]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11452010]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 16563434]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 10954428]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 16582425]; Ede1p 3253870..3257805 Sugiyamaella lignohabitans 30035069 AWJ20_3087 CDS DIN7 NC_031674.1 3258889 3259284 R exodeoxyribonuclease DIN7 complement(3258889..3259284) Sugiyamaella lignohabitans 30035070 AWJ20_3088 CDS SFB3 NC_031674.1 3260052 3262991 D Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat; COPII coat is required for cargo selection during vesicle formation in ER to Golgi transport; homologous to Sec24p and Sfb2p; GO_component: GO:0030127 - COPII vesicle coat [Evidence IEA]; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 11086000]; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 12426382]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence ISS] [PMID 12941277]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0090110 - cargo loading into COPII-coated vesicle [Evidence IDA] [PMID 12426382]; GO_process: GO:0090110 - cargo loading into COPII-coated vesicle [Evidence IDA,IMP] [PMID 12941277]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sfb3p 3260052..3262991 Sugiyamaella lignohabitans 30035071 AWJ20_3089 CDS AWJ20_3089 NC_031674.1 3263091 3263573 R Molybdopterin-converting factor subunit 2 complement(3263091..3263573) Sugiyamaella lignohabitans 30035072 AWJ20_3090 CDS HRB1 NC_031674.1 3265851 3267047 D Poly(A+) RNA-binding protein; key surveillance factor for the selective export of spliced mRNAs from the nucleus to the cytoplasm; preference for intron-containing genes; similar to Npl3p; HRB1 has a paralog, GBP2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9499403]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9499403]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 14676199]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0071028 - nuclear mRNA surveillance [Evidence IMP] [PMID 24452287]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IPI] [PMID 14769921]; Hrb1p 3265851..3267047 Sugiyamaella lignohabitans 30035074 AWJ20_3091 CDS SGF29 NC_031674.1 3267387 3268046 R Component of the HAT/Core module of the SAGA, SLIK, and ADA complexes; HAT/Core module also contains Gcn5p, Ngg1p, and Ada2p; binds methylated histone H3K4; involved in transcriptional regulation through SAGA and TBP recruitment to target promoters and H3 acetylation; GO_component: GO:0005671 - Ada2/Gcn5/Ada3 transcription activator complex [Evidence IMP,IPI] [PMID 21734642]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 12052880]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IMP] [PMID 21685874]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 21685874]; GO_process: GO:0034629 - cellular protein complex localization [Evidence IMP] [PMID 21685874]; GO_process: GO:0034613 - cellular protein localization [Evidence IMP] [PMID 22224423]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0070868 - heterochromatin organization involved in chromatin silencing [Evidence IMP] [PMID 24307402]; GO_process: GO:0044154 - histone H3-K14 acetylation [Evidence IMP] [PMID 21685874]; GO_process: GO:0043971 - histone H3-K18 acetylation [Evidence IMP] [PMID 21685874]; GO_process: GO:0043970 - histone H3-K9 acetylation [Evidence IMP] [PMID 21685874]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 21685874]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sgf29p complement(3267387..3268046) Sugiyamaella lignohabitans 30035075 AWJ20_3092 CDS PGS1 NC_031674.1 3268961 3270814 R Phosphatidylglycerolphosphate synthase; catalyzes the synthesis of phosphatidylglycerolphosphate from CDP-diacylglycerol and sn-glycerol 3-phosphate in the first committed and rate-limiting step of cardiolipin biosynthesis; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9799363]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]; GO_function: GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IMP] [PMID 9545322]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032049 - cardiolipin biosynthetic process [Evidence IMP] [PMID 9545322]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006655 - phosphatidylglycerol biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(3268961..3270814) Sugiyamaella lignohabitans 30035076 AWJ20_3093 CDS MRPS18 NC_031674.1 3272178 3272846 R Mitochondrial ribosomal protein of the small subunit; essential for viability, unlike most other mitoribosomal proteins; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IDA] [PMID 12392552]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein YmS18 complement(3272178..3272846) Sugiyamaella lignohabitans 30035077 AWJ20_3094 CDS GPP2 NC_031674.1 3275482 3276231 D DL-glycerol-3-phosphate phosphatase involved in glycerol biosynthesis; also known as glycerol-1-phosphatase; induced in response to hyperosmotic or oxidative stress, and during diauxic shift; GPP2 has a paralog, GPP1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0000121 - glycerol-1-phosphatase activity [Evidence IEA]; GO_function: GO:0000121 - glycerol-1-phosphatase activity [Evidence IDA] [PMID 8662716]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IDA] [PMID 8662716]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0006114 - glycerol biosynthetic process [Evidence IMP] [PMID 11058591]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IDA] [PMID 8662716]; GO_process: GO:0006950 - response to stress [Evidence IEA]; glycerol-1-phosphatase HOR2 3275482..3276231 Sugiyamaella lignohabitans 30035078 AWJ20_3095 CDS CLA4 NC_031674.1 3276710 3278713 R serine/threonine protein kinase CLA4 complement(3276710..3278713) Sugiyamaella lignohabitans 30035079 AWJ20_3096 CDS AWJ20_3096 NC_031674.1 3279105 3279605 R uncharacterized protein complement(3279105..3279605) Sugiyamaella lignohabitans 30035080 AWJ20_3097 CDS MPH1 NC_031674.1 3283330 3286572 R 3'-5' DNA helicase involved in error-free bypass of DNA lesions; binds flap DNA in error-free bypass pathway, stimulates activity of Rad27p and Dna2p; prevents crossovers between ectopic sequences by removing substrates for Mus81-Mms4 or Rad1-Rad10 cleavage; similar to FANCM human Fanconi anemia complementation group protein that with MHF complex is involved in stabilizing and remodeling blocked replication forks; member of SF2 DExD/H superfamily of helicases; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10880470]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19995966]; GO_function: GO:0043138 - 3'-5' DNA helicase activity [Evidence IDA] [PMID 15634678]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0070336 - flap-structured DNA binding [Evidence IDA] [PMID 19181670]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0033567 - DNA replication, Okazaki fragment processing [Evidence IGI] [PMID 19181670]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0036297 - interstrand cross-link repair [Evidence IGI] [PMID 22912599]; GO_process: GO:0060543 - negative regulation of strand invasion [Evidence IDA,IMP] [PMID 19136626]; GO_process: GO:0000725 - recombinational repair [Evidence IMP] [PMID 19995966]; Mph1p complement(3283330..3286572) Sugiyamaella lignohabitans 30035081 AWJ20_3098 CDS YND1 NC_031674.1 3286772 3288805 R Apyrase with wide substrate specificity; helps prevent inhibition of glycosylation by hydrolyzing nucleoside tri- and diphosphates that inhibit glycotransferases; partially redundant with Gda1p; mediates adenovirus E4orf4-induced toxicity; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 10551827]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 10409709]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0017110 - nucleoside-diphosphatase activity [Evidence IDA] [PMID 10409709]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IDA] [PMID 10409709]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 10409709]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; Ynd1p complement(3286772..3288805) Sugiyamaella lignohabitans 30035082 AWJ20_3099 CDS AWJ20_3099 NC_031674.1 3289724 3290842 R cycloisomerase 2 family complement(3289724..3290842) Sugiyamaella lignohabitans 30035083 AWJ20_3100 CDS SEC10 NC_031674.1 3291903 3294149 D Essential 100kDa subunit of the exocyst complex; the exocyst mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane prior to SNARE-mediated fusion; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 8978675]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 7026045]; GO_process: GO:0006887 - exocytosis [Evidence IEA,IEA]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 6996832]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048278 - vesicle docking [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 8978675]; Sec10p 3291903..3294149 Sugiyamaella lignohabitans 30035086 AWJ20_3101 CDS CDC1 NC_031674.1 3294628 3296274 R Putative lipid phosphatase of the endoplasmic reticulum; shows Mn2+ dependence and may affect Ca2+ signaling; mutants display actin and general growth defects and pleiotropic defects in cell cycle progression and organelle distribution; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 18332110]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12524434]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 7969142]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 11285273]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IGI,IMP] [PMID 9560393]; GO_process: GO:0016311 - dephosphorylation [Evidence IMP] [PMID 18332110]; putative lipid phosphatase CDC1 complement(3294628..3296274) Sugiyamaella lignohabitans 30035087 AWJ20_3102 CDS AWJ20_3102 NC_031674.1 3296714 3297907 D uncharacterized protein 3296714..3297907 Sugiyamaella lignohabitans 30035088 AWJ20_3103 CDS AWJ20_3103 NC_031674.1 3304581 3305003 D uncharacterized protein 3304581..3305003 Sugiyamaella lignohabitans 30035089 AWJ20_3104 CDS PRM10 NC_031674.1 3306410 3308776 D pheromone-regulated protein PRM10 3306410..3308776 Sugiyamaella lignohabitans 30035090 AWJ20_3105 CDS PRM10 NC_031674.1 3309079 3309489 D pheromone-regulated protein PRM10 3309079..3309489 Sugiyamaella lignohabitans 30035091 AWJ20_3106 CDS CHS5 NC_031674.1 3314654 3316306 D Component of the exomer complex; exomer also contains Csh6p, Bch1p, Bch2p, and Bud7p and is involved in export of selected proteins, such as chitin synthase Chs3p, from the Golgi to the plasma membrane; Chs5p is the only protein with a BRCT domain that is not localized to the nucleus; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9008706]; GO_component: GO:0034044 - exomer complex [Evidence IDA] [PMID 17000877]; GO_component: GO:0034044 - exomer complex [Evidence IDA] [PMID 23000721]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IMP] [PMID 11879634]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI,IMP] [PMID 16498409]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 9111317]; GO_process: GO:0006039 - cell wall chitin catabolic process [Evidence IMP] [PMID 9111317]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 16498409]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 9111317]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IDA] [PMID 17000877]; GO_process: GO:0006810 - transport [Evidence IEA]; Chs5p 3314654..3316306 Sugiyamaella lignohabitans 30035092 AWJ20_3107 CDS VMA7 NC_031674.1 3316621 3316878 R Subunit F of the V1 peripheral membrane domain of V-ATPase; part of the electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane; the V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase) has eight subunits; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence TAS] [PMID 11780757]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0033180 - proton-transporting V-type ATPase, V1 domain [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 9442887]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 10224039]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 9442887]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0034220 - ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; H(+)-transporting V1 sector ATPase subunit F complement(3316621..3316878) Sugiyamaella lignohabitans 30035093 AWJ20_3108 CDS AWJ20_3108 NC_031674.1 3319988 3320845 D uncharacterized protein 3319988..3320845 Sugiyamaella lignohabitans 30035094 AWJ20_3109 CDS STE12 NC_031674.1 3320949 3322760 R homeodomain family transcription factor STE12 complement(3320949..3322760) Sugiyamaella lignohabitans 30035095 AWJ20_3110 CDS AWJ20_3110 NC_031674.1 3328804 3329721 R uncharacterized protein complement(3328804..3329721) Sugiyamaella lignohabitans 30035097 AWJ20_3111 CDS CHO2 NC_031674.1 3331796 3334729 D Phosphatidylethanolamine methyltransferase (PEMT); catalyzes the first step in the conversion of phosphatidylethanolamine to phosphatidylcholine during the methylation pathway of phosphatidylcholine biosynthesis; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 2445736]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0004608 - phosphatidylethanolamine N-methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004608 - phosphatidylethanolamine N-methyltransferase activity [Evidence IDA,IGI] [PMID 2445736]; GO_function: GO:0004608 - phosphatidylethanolamine N-methyltransferase activity [Evidence IDA,IMP] [PMID 3066687]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IMP] [PMID 23000174]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IDA,IGI] [PMID 2445736]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IDA,IMP] [PMID 3066687]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0006644 - phospholipid metabolic process [Evidence IEA]; phosphatidylethanolamine N-methyltransferase 3331796..3334729 Sugiyamaella lignohabitans 30035098 AWJ20_3112 CDS MTR3 NC_031674.1 3334866 3335684 R Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hMtr3p (EXOSC6); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 8534909]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10465791]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071028 - nuclear mRNA surveillance [Evidence IMP] [PMID 11030620]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IMP] [PMID 18591258]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 18007593]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15935758]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IC] [PMID 10465791]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Mtr3p complement(3334866..3335684) Sugiyamaella lignohabitans 30035099 AWJ20_3113 CDS GIT1 NC_031674.1 3336096 3337397 R Plasma membrane permease; mediates uptake of glycerophosphoinositol and glycerophosphocholine as sources of the nutrients inositol and phosphate; expression and transport rate are regulated by phosphate and inositol availability; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16924500]; GO_component: GO:0005886 - plasma membrane [Evidence IMP] [PMID 9691030]; GO_function: GO:0015169 - glycerol-3-phosphate transmembrane transporter activity [Evidence IGI,IMP] [PMID 20133652]; GO_function: GO:0001406 - glycerophosphodiester transmembrane transporter activity [Evidence IDA] [PMID 16924500]; GO_function: GO:0001406 - glycerophosphodiester transmembrane transporter activity [Evidence IMP] [PMID 9691030]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015794 - glycerol-3-phosphate transport [Evidence IGI,IMP] [PMID 20133652]; GO_process: GO:0001407 - glycerophosphodiester transport [Evidence IDA] [PMID 16924500]; GO_process: GO:0001407 - glycerophosphodiester transport [Evidence IMP] [PMID 9691030]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 9691030]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Git1p complement(3336096..3337397) Sugiyamaella lignohabitans 30035100 AWJ20_3114 CDS SPS19 NC_031674.1 3339483 3340235 R Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p complement(3339483..3340235) Sugiyamaella lignohabitans 30035101 AWJ20_3115 CDS GSH2 NC_031674.1 3341977 3343530 R Glutathione synthetase; catalyzes the ATP-dependent synthesis of glutathione (GSH) from gamma-glutamylcysteine and glycine; induced by oxidative stress and heat shock; GO_component: GO:0005622 - intracellular [Evidence TAS] [PMID 12406228]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004363 - glutathione synthase activity [Evidence IEA,IEA]; GO_function: GO:0004363 - glutathione synthase activity [Evidence IDA] [PMID 9512666]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006750 - glutathione biosynthetic process [Evidence IMP] [PMID 9512666]; glutathione synthase complement(3341977..3343530) Sugiyamaella lignohabitans 30035102 AWJ20_3116 CDS TPO1 NC_031674.1 3343851 3345338 R Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; recognizes spermine, putrescine, and spermidine; catalyzes uptake of polyamines at alkaline pH and excretion at acidic pH; during oxidative stress exports spermine, spermidine from the cell, which controls timing of expression of stress-responsive genes; phosphorylation enhances activity and sorting to the plasma membrane; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0015606 - spermidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IDA,IMP] [PMID 15637075]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 9920864]; GO_process: GO:1902047 - polyamine transmembrane transport [Evidence IMP] [PMID 24136413]; GO_process: GO:0015847 - putrescine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0015848 - spermidine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0015848 - spermidine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IDA,IMP] [PMID 15637075]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 9920864]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo1p complement(3343851..3345338) Sugiyamaella lignohabitans 30035103 AWJ20_3117 CDS FLR1 NC_031674.1 3346038 3346853 R Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs; expression induced in cells treated with the mycotoxin patulin; relocalizes from nucleus to plasma membrane upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10903515]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015244 - fluconazole transporter activity [Evidence ISS] [PMID 9235926]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI,IMP] [PMID 10572257]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI] [PMID 9235926]; GO_process: GO:0015893 - drug transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9235926]; GO_process: GO:0006810 - transport [Evidence IEA]; Flr1p complement(3346038..3346853) Sugiyamaella lignohabitans 30035104 AWJ20_3118 CDS FLR1 NC_031674.1 3347006 3347827 R Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs; expression induced in cells treated with the mycotoxin patulin; relocalizes from nucleus to plasma membrane upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10903515]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015244 - fluconazole transporter activity [Evidence ISS] [PMID 9235926]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI,IMP] [PMID 10572257]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI] [PMID 9235926]; GO_process: GO:0015893 - drug transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9235926]; GO_process: GO:0006810 - transport [Evidence IEA]; Flr1p complement(3347006..3347827) Sugiyamaella lignohabitans 30035105 AWJ20_3119 CDS BUD22 NC_031674.1 3349378 3350652 R Protein required for rRNA maturation and ribosomal subunit biogenesis; required for 18S rRNA maturation; also required for small ribosomal subunit biogenesis; cosediments with pre-ribosomal particles; mutation decreases efficiency of +1 Ty1 frameshifting and transposition, and affects budding pattern; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 19806183]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11452010]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IMP] [PMID 20498295]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 20498295]; Bud22p complement(3349378..3350652) Sugiyamaella lignohabitans 30035106 AWJ20_3120 CDS MRPL28 NC_031674.1 3351004 3351516 R Mitochondrial ribosomal protein of the large subunit; protein abundance increases in response to DNA replication stress; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; mitochondrial 54S ribosomal protein YmL28 complement(3351004..3351516) Sugiyamaella lignohabitans 30035108 AWJ20_3121 CDS AWJ20_3121 NC_031674.1 3351911 3352774 D uncharacterized protein 3351911..3352774 Sugiyamaella lignohabitans 30035109 AWJ20_3122 CDS RIM1 NC_031674.1 3354883 3355308 R ssDNA-binding protein essential for mitochondrial genome maintenance; involved in mitochondrial DNA replication; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 1324172]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 1324172]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006264 - mitochondrial DNA replication [Evidence ISS] [PMID 1324172]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 1324172]; Rim1p complement(3354883..3355308) Sugiyamaella lignohabitans 30035110 AWJ20_3123 CDS AWJ20_3123 NC_031674.1 3355897 3357357 D prenylcysteine lyase, putative 3355897..3357357 Sugiyamaella lignohabitans 30035111 AWJ20_3124 CDS MEP2 NC_031674.1 3359355 3360776 D Ammonium permease involved in regulation of pseudohyphal growth; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11069679]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IDA,IMP] [PMID 9234685]; GO_process: GO:0072488 - ammonium transmembrane transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEA,IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IMP] [PMID 9234685]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 9234685]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9482721]; GO_process: GO:0006810 - transport [Evidence IEA]; ammonium permease MEP2 3359355..3360776 Sugiyamaella lignohabitans 30035112 AWJ20_3125 CDS SCJ1 NC_031674.1 3361010 3361819 R One of several homologs of bacterial chaperone DnaJ; located in the ER lumen where it cooperates with Kar2p to mediate maturation of proteins; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 7744969]; GO_function: GO:0051087 - chaperone binding [Evidence IMP,ISS] [PMID 9817751]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11381090]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IMP] [PMID 9817751]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006986 - response to unfolded protein [Evidence IMP] [PMID 9817751]; GO_process: GO:0006810 - transport [Evidence IEA]; Scj1p complement(3361010..3361819) Sugiyamaella lignohabitans 30035113 AWJ20_3126 CDS AWJ20_3126 NC_031674.1 3362575 3363063 R N-acetyltransferase (predicted) complement(3362575..3363063) Sugiyamaella lignohabitans 30035114 AWJ20_3127 CDS TIM50 NC_031674.1 3363239 3364786 R Essential component of the TIM23 complex; acts as receptor for the translocase of the inner mitochondrial membrane (TIM23) complex guiding incoming precursors from the TOM complex; may control the gating of the Tim23p-Tim17p channel; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IDA] [PMID 12437924]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IDA] [PMID 12437925]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0030943 - mitochondrion targeting sequence binding [Evidence IDA] [PMID 18418384]; GO_function: GO:0030943 - mitochondrion targeting sequence binding [Evidence IDA] [PMID 19144822]; GO_function: GO:0015266 - protein channel activity [Evidence IMP] [PMID 16763150]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 12437924]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 12437925]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0046902 - regulation of mitochondrial membrane permeability [Evidence IDA] [PMID 16763150]; GO_process: GO:0006810 - transport [Evidence IEA]; Tim50p complement(3363239..3364786) Sugiyamaella lignohabitans 30035115 AWJ20_3128 CDS SAP1 NC_031674.1 3366192 3368636 D Putative ATPase of the AAA family; interacts with the Sin1p transcriptional repressor in the two-hybrid system; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8654588]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; putative AAA family ATPase SAP1 3366192..3368636 Sugiyamaella lignohabitans 30035116 AWJ20_3129 CDS TPA1 NC_031674.1 3368875 3370584 D Poly(rA)-binding protein; involved in translation termination efficiency, mRNA poly(A) tail length and mRNA stability; interacts with Sup45p (eRF1), Sup35p (eRF3) and Pab1p; similar to human prolyl 4-hydroxylase OGFOD1; binds Fe(III) and 2-oxoglutarate; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0031418 - L-ascorbic acid binding [Evidence IEA,IEA]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_function: GO:0016706 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA] [PMID 20040577]; GO_process: GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IMP] [PMID 16809762]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006415 - translational termination [Evidence IMP] [PMID 16809762]; GO_process: GO:0006415 - translational termination [Evidence IMP] [PMID 20630870]; Tpa1p 3368875..3370584 Sugiyamaella lignohabitans 30035117 AWJ20_3130 CDS AWJ20_3130 NC_031674.1 3370697 3371467 R hybrid alkaline phosphatase complement(3370697..3371467) Sugiyamaella lignohabitans 30035119 AWJ20_3131 CDS GVP36 NC_031674.1 3372599 3373525 R BAR domain-containing protein that localizes to Golgi vesicles; the Golgi vesicles it localizes to are both early and late; required for adaptation to varying nutrient concentrations, fluid-phase endocytosis, polarization of the actin cytoskeleton, and vacuole biogenesis; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 16107716]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 18156177]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 18156177]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 18156177]; Gvp36p complement(3372599..3373525) Sugiyamaella lignohabitans 30035120 AWJ20_3132 CDS VAC14 NC_031674.1 3374775 3377348 D Enzyme regulator; involved in synthesis of phosphatidylinositol 3,5-bisphosphate, in control of trafficking of some proteins to the vacuole lumen via the MVB, and in maintenance of vacuole size and acidity; binds negative (Fig4p) and positive (Fab1p) regulators of PtdIns(3,5)P(2) to control endolysosome function; GO_component: GO:0070772 - PAS complex [Evidence IDA,IPI] [PMID 19037259]; GO_component: GO:0000306 - extrinsic component of vacuolar membrane [Evidence IDA] [PMID 11889142]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 11889142]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14528018]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23708375]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA,IMP] [PMID 19037259]; GO_process: GO:0006661 - phosphatidylinositol biosynthetic process [Evidence IGI,IMP] [PMID 11889142]; GO_process: GO:0033674 - positive regulation of kinase activity [Evidence IGI,IMP] [PMID 11889142]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vac14p 3374775..3377348 Sugiyamaella lignohabitans 30035121 AWJ20_3133 CDS CEX1 NC_031674.1 3378654 3380087 D Component of nuclear aminoacylation-dependent tRNA export pathway; cytoplasmic; interacts with nuclear pore component Nup116p; copurifies with tRNA export receptors Los1p and Msn5p, as well as eIF-1a; required for activation of RAN GTPase Gsp1p and dissociation of receptor-tRNA-Gsp1p export complex; recruits Rna1p from cytoplasm to NPC, facilitates Rna1p activation of Gsp1p GTPase activity by enabling Rna1p to gain access to Gsp1p-GTP bound to export receptor tRNA complex; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17203074]; GO_component: GO:0005643 - nuclear pore [Evidence IDA,IPI] [PMID 17203074]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 17203074]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IGI,IMP,IPI] [PMID 17203074]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IGI] [PMID 22008473]; Cex1p 3378654..3380087 Sugiyamaella lignohabitans 30035122 AWJ20_3134 CDS DBP2 NC_031674.1 3381276 3382622 R ATP-dependent RNA helicase of the DEAD-box protein family; has a strong preference for dsRNA; interacts with YRA1; required for the assembly of Yra1p, Nab2p and Mex67p onto mRNA and formation of nuclear mRNP; involved in mRNA decay and rRNA processing; may be involved in suppression of transcription from cryptic initiation sites; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22679025]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 23721653]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA,IMP] [PMID 22679025]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:1990120 - messenger ribonucleoprotein complex assembly [Evidence IMP] [PMID 23721653]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IGI,IMP] [PMID 22679025]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IPI] [PMID 7883168]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11585918]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; DEAD-box ATP-dependent RNA helicase DBP2 complement(3381276..3382622) Sugiyamaella lignohabitans 30035123 AWJ20_3135 CDS GCN4 NC_031674.1 3387423 3388325 D amino acid starvation-responsive transcription factor GCN4 3387423..3388325 Sugiyamaella lignohabitans 30035124 AWJ20_3136 CDS AWJ20_3136 NC_031674.1 3388637 3390514 R uncharacterized protein complement(3388637..3390514) Sugiyamaella lignohabitans 30035125 AWJ20_3137 CDS CYB5 NC_031674.1 3391250 3391531 R Cytochrome b5; involved in the sterol and lipid biosynthesis pathways; acts as an electron donor to support sterol C5-6 desaturation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 12514182]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IDA] [PMID 10622712]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IDA] [PMID 10622712]; Cyb5p complement(3391250..3391531) Sugiyamaella lignohabitans 30035126 AWJ20_3138 CDS CKA2 NC_031674.1 3394792 3395835 D Alpha' catalytic subunit of casein kinase 2 (CK2); CK2 is a Ser/Thr protein kinase with roles in cell growth and proliferation; CK2, comprised of CKA1, CKA2, CKB1 and CKB2, has many substrates including transcription factors and all RNA polymerases; protein abundance increases in response to DNA replication stress; regulates Fkh1p-mediated donor preference during mating-type switching; GO_component: GO:0034456 - UTP-C complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005956 - protein kinase CK2 complex [Evidence IDA] [PMID 8135547]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 8226802]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IDA] [PMID 11551505]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 20657825]; GO_process: GO:0007535 - donor selection [Evidence IGI] [PMID 22496671]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16952051]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IDA] [PMID 11551505]; GO_process: GO:0006359 - regulation of transcription from RNA polymerase III promoter [Evidence IDA] [PMID 11551505]; casein kinase 2 catalytic subunit CKA2 3394792..3395835 Sugiyamaella lignohabitans 30035127 AWJ20_3139 CDS CYR1 NC_031674.1 3396183 3401024 R Adenylate cyclase; required for cAMP production and cAMP-dependent protein kinase signaling; the cAMP pathway controls a variety of cellular processes, including metabolism, cell cycle, stress response, stationary phase, and sporulation; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 22575457]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 22575457]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2196438]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004016 - adenylate cyclase activity [Evidence IEA,IEA]; GO_function: GO:0004016 - adenylate cyclase activity [Evidence IDA] [PMID 2934138]; GO_function: GO:0004016 - adenylate cyclase activity [Evidence IMP] [PMID 6360999]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016849 - phosphorus-oxygen lyase activity [Evidence IEA]; GO_process: GO:0007265 - Ras protein signal transduction [Evidence IGI] [PMID 2934138]; GO_process: GO:0007188 - adenylate cyclase-modulating G-protein coupled receptor signaling pathway [Evidence IGI] [PMID 2934138]; GO_process: GO:0006171 - cAMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; adenylate cyclase complement(3396183..3401024) Sugiyamaella lignohabitans 30035128 AWJ20_3140 CDS GRE3 NC_031674.1 3407965 3408936 D Aldose reductase; involved in methylglyoxal, d-xylose, arabinose, and galactose metabolism; stress induced (osmotic, ionic, oxidative, heat shock, starvation and heavy metals); regulated by the HOG pathway; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0032866 - D-xylose:NADP reductase activity [Evidence IDA,IMP] [PMID 11481678]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IEA]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA] [PMID 11525399]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA,IMP] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA,IMP] [PMID 12271459]; GO_process: GO:0071470 - cellular response to osmotic stress [Evidence IDA] [PMID 11525399]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0019388 - galactose catabolic process [Evidence IGI] [PMID 18811659]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; trifunctional aldehyde reductase/xylose reductase/glucose 1-dehydrogenase (NADP(+)) 3407965..3408936 Sugiyamaella lignohabitans 30035130 AWJ20_3141 CDS NIT3 NC_031674.1 3409312 3410178 D Nit protein; one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence ISS] [PMID 11380987]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; Nit3p 3409312..3410178 Sugiyamaella lignohabitans 30035131 AWJ20_3142 CDS TUB4 NC_031674.1 3412537 3413643 D gamma-tubulin 3412537..3413643 Sugiyamaella lignohabitans 30035132 AWJ20_3143 CDS MEU1 NC_031674.1 3417680 3418835 D Methylthioadenosine phosphorylase (MTAP); catalyzes the initial step in the methionine salvage pathway; affects polyamine biosynthesis through regulation of ornithine decarboxylase (Spe1p) activity; regulates ADH2 gene expression; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8807288]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0017061 - S-methyl-5-thioadenosine phosphorylase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0017061 - S-methyl-5-thioadenosine phosphorylase activity [Evidence IDA,IMP] [PMID 14506228]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0004645 - phosphorylase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016763 - transferase activity, transferring pentosyl groups [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IDA,IMP] [PMID 14506228]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 18625006]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IMP] [PMID 8807288]; GO_process: GO:0009116 - nucleoside metabolic process [Evidence IEA]; GO_process: GO:0006166 - purine ribonucleoside salvage [Evidence IEA]; S-methyl-5-thioadenosine phosphorylase join(3417680..3417713,3417898..3418835) Sugiyamaella lignohabitans 30035133 AWJ20_3144 CDS AWJ20_3144 NC_031674.1 3419095 3420333 R uncharacterized protein complement(3419095..3420333) Sugiyamaella lignohabitans 30035134 AWJ20_3145 CDS NDE2 NC_031674.1 3421218 3422738 D Mitochondrial external NADH dehydrogenase; catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p are involved in providing the cytosolic NADH to the mitochondrial respiratory chain; NDE2 has a paralog, NDE1, that arose from the whole genome duplication; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP,ISS] [PMID 9733747]; GO_function: GO:0003954 - NADH dehydrogenase activity [Evidence ISS] [PMID 9696750]; GO_function: GO:0003954 - NADH dehydrogenase activity [Evidence ISS] [PMID 9733747]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 12032156]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IGI,IMP,ISS] [PMID 9733747]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; NADH-ubiquinone reductase (H(+)-translocating) NDE2 3421218..3422738 Sugiyamaella lignohabitans 30035135 AWJ20_3146 CDS CBR1 NC_031674.1 3423051 3423935 D Microsomal cytochrome b reductase; not essential for viability; also detected in mitochondria; mutation in conserved NADH binding domain of the human ortholog results in type I methemoglobinemia; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004128 - cytochrome-b5 reductase activity, acting on NAD(P)H [Evidence IEA]; GO_function: GO:0004128 - cytochrome-b5 reductase activity, acting on NAD(P)H [Evidence IDA] [PMID 14930]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cbr1p 3423051..3423935 Sugiyamaella lignohabitans 30035136 AWJ20_3147 CDS HOM3 NC_031674.1 3424150 3425658 R Aspartate kinase (L-aspartate 4-P-transferase); cytoplasmic enzyme that catalyzes the first step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016597 - amino acid binding [Evidence IEA]; GO_function: GO:0004072 - aspartate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004072 - aspartate kinase activity [Evidence IDA,IMP] [PMID 18626862]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009090 - homoserine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IDA,IMP] [PMID 18626862]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IMP] [PMID 4380684]; aspartate kinase complement(3424150..3425658) Sugiyamaella lignohabitans 30035137 AWJ20_3148 CDS PSR2 NC_031674.1 3426609 3428825 D Plasma membrane phosphatase involved in the general stress response; required with Psr1p and Whi2p for full activation of STRE-mediated gene expression, possibly through dephosphorylation of Msn2p; PSR2 has a paralog, PSR1, that arose from the whole genome duplication; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10777497]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence ISA] [PMID 10777497]; GO_process: GO:0071472 - cellular response to salt stress [Evidence IGI] [PMID 10777497]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Psr2p join(3426609..3426687,3427294..3428825) Sugiyamaella lignohabitans 30035138 AWJ20_3149 CDS SOF1 NC_031674.1 3429189 3430370 R Protein required for biogenesis of 40S (small) ribosomal subunit; has similarity to the beta subunit of trimeric G-proteins and the splicing factor Prp4p; essential gene; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15367670]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 8508778]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8508778]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Sof1p complement(3429189..3430370) Sugiyamaella lignohabitans 30035139 AWJ20_3150 CDS KHA1 NC_031674.1 3433694 3436090 R Putative K+/H+ antiporter; has a probable role in intracellular cation homeostasis; localized to Golgi vesicles and detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15926887]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 17176761]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015386 - potassium:proton antiporter activity [Evidence IMP,ISS] [PMID 9811642]; GO_function: GO:0015299 - solute:proton antiporter activity [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015672 - monovalent inorganic cation transport [Evidence IMP,ISS] [PMID 9811642]; GO_process: GO:0006813 - potassium ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Kha1p complement(3433694..3436090) Sugiyamaella lignohabitans 30035141 AWJ20_3151 CDS AWJ20_3151 NC_031674.1 3438057 3439733 D uncharacterized protein 3438057..3439733 Sugiyamaella lignohabitans 30035142 AWJ20_3152 CDS AWJ20_3152 NC_031674.1 3439768 3440610 R uncharacterized protein complement(3439768..3440610) Sugiyamaella lignohabitans 30035143 AWJ20_3153 CDS BRR6 NC_031674.1 3441609 3443024 D Essential nuclear envelope integral membrane protein; required for nuclear envelope morphology, nuclear pore complex localization, nuclear export; exhibits synthetic lethal genetic interactions with genes involved in lipid metabolism; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11483521]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IGI] [PMID 20016074]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 11483521]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006998 - nuclear envelope organization [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 11483521]; GO_process: GO:0006810 - transport [Evidence IEA]; Brr6p 3441609..3443024 Sugiyamaella lignohabitans 30035144 AWJ20_3154 CDS ASE1 NC_031674.1 3443393 3445687 D Mitotic spindle midzone-localized microtubule bundling protein; microtubule-associated protein (MAP) family member; required for spindle elongation and stabilization; undergoes cell cycle-regulated degradation by anaphase promoting complex; potential Cdc28p substrate; relative distribution to microtubules decreases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005874 - microtubule [Evidence IDA] [PMID 22842922]; GO_component: GO:0005880 - nuclear microtubule [Evidence IDA] [PMID 7559759]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005819 - spindle [Evidence IDA] [PMID 7559759]; GO_component: GO:0051233 - spindle midzone [Evidence IDA] [PMID 7559759]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 12591913]; GO_process: GO:0000910 - cytokinesis [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 16615892]; GO_process: GO:0001578 - microtubule bundle formation [Evidence IDA] [PMID 12591913]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IEA]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IMP] [PMID 12591913]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IGI,IMP] [PMID 7559759]; GO_process: GO:0043148 - mitotic spindle stabilization [Evidence IMP] [PMID 9036857]; GO_process: GO:0051255 - spindle midzone assembly [Evidence IMP] [PMID 17562791]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 16688214]; Ase1p 3443393..3445687 Sugiyamaella lignohabitans 30035145 AWJ20_3155 CDS ABZ2 NC_031674.1 3447800 3448816 D Aminodeoxychorismate lyase (4-amino-4-deoxychorismate lyase); catalyzes the third step in para-aminobenzoic acid biosynthesis; involved in folic acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008696 - 4-amino-4-deoxychorismate lyase activity [Evidence IEA]; GO_function: GO:0008696 - 4-amino-4-deoxychorismate lyase activity [Evidence IDA] [PMID 17873082]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IMP] [PMID 17873082]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]; aminodeoxychorismate lyase ABZ2 3447800..3448816 Sugiyamaella lignohabitans 30035146 AWJ20_3156 CDS SER2 NC_031674.1 3449029 3449967 R Phosphoserine phosphatase of the phosphoglycerate pathway; involved in serine and glycine biosynthesis, expression is regulated by the available nitrogen source; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IBA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA]; GO_function: GO:0004647 - phosphoserine phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004647 - phosphoserine phosphatase activity [Evidence IMP] [PMID 1326413]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IMP] [PMID 1326413]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; phosphoserine phosphatase complement(3449029..3449967) Sugiyamaella lignohabitans 30035147 AWJ20_3157 CDS AWJ20_3157 NC_031674.1 3450189 3451979 D uncharacterized protein 3450189..3451979 Sugiyamaella lignohabitans 30035148 AWJ20_3158 CDS SSL2 NC_031674.1 3452557 3454806 D Component of RNA polymerase transcription factor TFIIH holoenzyme; has DNA-dependent ATPase/helicase activity and is required, with Rad3p, for unwinding promoter DNA; interacts functionally with TFIIB and has roles in transcription start site selection and in gene looping to juxtapose initiation and termination regions; involved in DNA repair; relocalizes to the cytosol in response to hypoxia; homolog of human ERCC3; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 7961739]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IDA] [PMID 8855246]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0097550 - transcriptional preinitiation complex [Evidence IDA] [PMID 22751016]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IDA] [PMID 8202161]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IDA] [PMID 22751016]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0033683 - nucleotide-excision repair, DNA incision [Evidence IDA] [PMID 8631896]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 17212653]; GO_process: GO:0001111 - promoter clearance from RNA polymerase II promoter [Evidence IMP] [PMID 10713451]; GO_process: GO:0000019 - regulation of mitotic recombination [Evidence IMP] [PMID 10713167]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0010525 - regulation of transposition, RNA-mediated [Evidence IMP] [PMID 10713167]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001113 - transcriptional open complex formation at RNA polymerase II promoter [Evidence IMP] [PMID 10409754]; TFIIH/NER complex ATPase/helicase subunit SSL2 3452557..3454806 Sugiyamaella lignohabitans 30035149 AWJ20_3159 CDS AWJ20_3159 NC_031674.1 3456745 3457902 R uncharacterized protein complement(3456745..3457902) Sugiyamaella lignohabitans 30035150 AWJ20_3160 CDS SPT10 NC_031674.1 3458195 3458863 R Putative histone acetylase with a role in transcriptional silencing; sequence-specific activator of histone genes, binds specifically and cooperatively to pairs of UAS elements in core histone promoters, functions at or near the TATA box; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence ISS] [PMID 9175471]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 16199888]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 17078097]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 21057056]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 21057056]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 21057056]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 12192040]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17526727]; Spt10p complement(3458195..3458863) Sugiyamaella lignohabitans 30035152 AWJ20_3161 CDS NIT2 NC_031674.1 3459468 3459848 D Nit protein; one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence ISS] [PMID 11380987]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; Nit2p 3459468..3459848 Sugiyamaella lignohabitans 30035153 AWJ20_3162 CDS NIT2 NC_031674.1 3460070 3460420 D Nit protein; one of two proteins in S. cerevisiae with similarity to the Nit domain of NitFhit from fly and worm and to the mouse and human Nit protein which interacts with the Fhit tumor suppressor; nitrilase superfamily member; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence ISS] [PMID 11380987]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; Nit2p 3460070..3460420 Sugiyamaella lignohabitans 30035154 AWJ20_3163 CDS AWJ20_3163 NC_031674.1 3461688 3462929 D uncharacterized protein 3461688..3462929 Sugiyamaella lignohabitans 30035155 AWJ20_3164 CDS FAB1 NC_031674.1 3463088 3468796 D 1-phosphatidylinositol-3-phosphate 5-kinase; vacuolar membrane kinase that generates phosphatidylinositol (3,5)P2, which is involved in vacuolar sorting and homeostasis; GO_component: GO:0070772 - PAS complex [Evidence IDA,IPI] [PMID 19037259]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IDA] [PMID 11889142]; GO_component: GO:0010008 - endosome membrane [Evidence IDA] [PMID 9763421]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 11889142]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9763421]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0000285 - 1-phosphatidylinositol-3-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0000285 - 1-phosphatidylinositol-3-phosphate 5-kinase activity [Evidence IMP] [PMID 9763421]; GO_function: GO:0000285 - 1-phosphatidylinositol-3-phosphate 5-kinase activity [Evidence IDA,IMP] [PMID 9811604]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 9702203]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IMP] [PMID 9763421]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA,IMP] [PMID 9811604]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-3-phosphate 5-kinase 3463088..3468796 Sugiyamaella lignohabitans 30035156 AWJ20_3165 CDS MSY1 NC_031674.1 3469230 3470612 R Mitochondrial tyrosyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 3315228]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004831 - tyrosine-tRNA ligase activity [Evidence IGI,ISS] [PMID 3315228]; GO_process: GO:0070184 - mitochondrial tyrosyl-tRNA aminoacylation [Evidence IGI,ISS] [PMID 3315228]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]; tyrosine--tRNA ligase MSY1 complement(3469230..3470612) Sugiyamaella lignohabitans 30035157 AWJ20_3166 CDS AWJ20_3166 NC_031674.1 3471097 3473481 D uncharacterized protein 3471097..3473481 Sugiyamaella lignohabitans 30035158 AWJ20_3167 CDS GCG1 NC_031674.1 3473573 3474217 R Gamma-glutamyl cyclotransferase; cleaves the gamma-glutamyl bond of glutathione to yield 5-oxoproline and a Cys-Gly dipeptide; similar to mammalian pro-apoptotic protein ChaC1; expression of mouse ChaC1 in yeast increases apoptosis; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; periodically expressed during the metabolic cycle; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003839 - gamma-glutamylcyclotransferase activity [Evidence IDA,IMP] [PMID 23070364]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IDA,IMP] [PMID 23070364]; Gcg1p complement(3473573..3474217) Sugiyamaella lignohabitans 30035159 AWJ20_3168 CDS RNT1 NC_031674.1 3475009 3476568 D Nuclear dsRNA-specific ribonuclease (RNase III); involved in rDNA transcription, rRNA processing and U2 snRNA 3' end formation by cleavage of a stem-loop structure at the 3' end of U2 snRNA; involved in polyadenylation-independent transcription termination; involved in the cell wall stress response, regulating the degradation of cell wall integrity and morphogenesis checkpoint genes; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15090619]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15090619]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IEA,IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IDA] [PMID 15766245]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0034473 - U1 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034963 - box C/D snoRNA processing [Evidence IMP] [PMID 23201338]; GO_process: GO:0034964 - box H/ACA snoRNA processing [Evidence IMP] [PMID 23201338]; GO_process: GO:0006325 - chromatin organization [Evidence IMP] [PMID 17991894]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA,IMP] [PMID 17158880]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 17991894]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 17991894]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 22576366]; GO_process: GO:0030847 - termination of RNA polymerase II transcription, exosome-dependent [Evidence IDA,IMP,IPI] [PMID 19818713]; Rnt1p 3475009..3476568 Sugiyamaella lignohabitans 30035160 AWJ20_3169 CDS YSA1 NC_031674.1 3476654 3476902 R Nudix hydrolase family member with ADP-ribose pyrophosphatase activity; shown to metabolize O-acetyl-ADP-ribose to AMP and acetylated ribose 5'-phosphate; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19251690]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0047631 - ADP-ribose diphosphatase activity [Evidence IEA]; GO_function: GO:0047631 - ADP-ribose diphosphatase activity [Evidence IDA] [PMID 10542272]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0019693 - ribose phosphate metabolic process [Evidence IDA] [PMID 10542272]; GO_process: GO:0019693 - ribose phosphate metabolic process [Evidence IDA] [PMID 12370179]; Ysa1p complement(3476654..3476902) Sugiyamaella lignohabitans 30035161 AWJ20_3170 CDS AWJ20_3170 NC_031674.1 3479484 3479732 D uncharacterized protein 3479484..3479732 Sugiyamaella lignohabitans 30035163 AWJ20_3171 CDS AWJ20_3171 NC_031674.1 3479974 3481266 R Putative aminopeptidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; putative aminopeptidase complement(3479974..3481266) Sugiyamaella lignohabitans 30035164 AWJ20_3172 CDS DFR1 NC_031674.1 3482231 3482833 D Dihydrofolate reductase involved in tetrahydrofolate biosynthesis; required for respiratory metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IC] [PMID 1427091]; GO_component: GO:0005829 - cytosol [Evidence IC] [PMID 2827121]; GO_component: GO:0005829 - cytosol [Evidence IC] [PMID 2838385]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004146 - dihydrofolate reductase activity [Evidence IEA,IEA]; GO_function: GO:0004146 - dihydrofolate reductase activity [Evidence IMP] [PMID 1427091]; GO_function: GO:0004146 - dihydrofolate reductase activity [Evidence IMP] [PMID 2827121]; GO_function: GO:0004146 - dihydrofolate reductase activity [Evidence IDA] [PMID 2838385]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0046452 - dihydrofolate metabolic process [Evidence IMP] [PMID 1427091]; GO_process: GO:0006545 - glycine biosynthetic process [Evidence IEA]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IMP] [PMID 1427091]; dihydrofolate reductase 3482231..3482833 Sugiyamaella lignohabitans 30035165 AWJ20_3173 CDS PPS1 NC_031674.1 3483246 3486671 R tyrosine/serine/threonine protein phosphatase PPS1 complement(3483246..3486671) Sugiyamaella lignohabitans 30035166 AWJ20_3174 CDS AWJ20_3174 NC_031674.1 3488096 3489052 R XP_001275318|NAD dependent epimerase/dehydratase family protein [Aspergillus clavatus NRRL 1]; NAD dependent epimerase/dehydratase family protein complement(3488096..3489052) Sugiyamaella lignohabitans 30035167 AWJ20_3175 CDS AWJ20_3175 NC_031674.1 3490037 3490363 R carbohydrate binding domain protein complement(3490037..3490363) Sugiyamaella lignohabitans 30035168 AWJ20_3176 CDS CYC3 NC_031674.1 3491077 3492293 R Cytochrome c heme lyase (holocytochrome c synthase); attaches heme to apo-cytochrome c (Cyc1p or Cyc7p) in the mitochondrial intermembrane space; human ortholog may have a role in microphthalmia with linear skin defects (MLS); GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 1656231]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004408 - holocytochrome-c synthase activity [Evidence IEA,IEA]; GO_function: GO:0004408 - holocytochrome-c synthase activity [Evidence IDA] [PMID 3034577]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0018063 - cytochrome c-heme linkage [Evidence IDA] [PMID 3034577]; holocytochrome c synthase CYC3 complement(join(3491077..3492003,3492234..3492293)) Sugiyamaella lignohabitans 30035169 AWJ20_3177 CDS DCP2 NC_031674.1 3493522 3493986 D decapping enzyme complex catalytic subunit DCP1 3493522..3493986 Sugiyamaella lignohabitans 30035170 AWJ20_3178 CDS CLN3 NC_031674.1 3503386 3504825 D cyclin CLN3 3503386..3504825 Sugiyamaella lignohabitans 30035171 AWJ20_3179 CDS AWJ20_3179 NC_031674.1 3511381 3512208 D uncharacterized protein 3511381..3512208 Sugiyamaella lignohabitans 30035172 AWJ20_3180 CDS NSG2 NC_031674.1 3513216 3514421 R Protein involved in regulation of sterol biosynthesis; specifically stabilizes Hmg2p, one of two HMG-CoA isoenzymes that catalyze the rate-limiting step in sterol biosynthesis; homolog of mammalian INSIG proteins; NSG2 has a paralog, NSG1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 16270032]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IGI] [PMID 16270032]; Nsg2p complement(3513216..3514421) Sugiyamaella lignohabitans 30035174 AWJ20_3181 CDS AWJ20_3181 NC_031674.1 3515367 3517406 R uncharacterized protein complement(3515367..3517406) Sugiyamaella lignohabitans 30035175 AWJ20_3182 CDS THO2 NC_031674.1 3518374 3521394 R Subunit of the THO complex; THO is required for efficient transcription elongation and involved in transcriptional elongation-associated recombination; required for LacZ RNA expression from certain plasmids; GO_component: GO:0000445 - THO complex part of transcription export complex [Evidence IPI] [PMID 11979277]; GO_component: GO:0000446 - nucleoplasmic THO complex [Evidence IMP,IPI] [PMID 11060033]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11139493]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 15343339]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IDA] [PMID 12093753]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 11060033]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 18614048]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 11979277]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 12093753]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 17960421]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 17537816]; Tho2p complement(3518374..3521394) Sugiyamaella lignohabitans 30035176 AWJ20_3183 CDS THO2 NC_031674.1 3522048 3524381 R Subunit of the THO complex; THO is required for efficient transcription elongation and involved in transcriptional elongation-associated recombination; required for LacZ RNA expression from certain plasmids; GO_component: GO:0000445 - THO complex part of transcription export complex [Evidence IPI] [PMID 11979277]; GO_component: GO:0000446 - nucleoplasmic THO complex [Evidence IMP,IPI] [PMID 11060033]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11139493]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 15343339]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IDA] [PMID 12093753]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 11060033]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP] [PMID 18614048]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 11979277]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 12093753]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 17960421]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence IMP] [PMID 17537816]; Tho2p complement(3522048..3524381) Sugiyamaella lignohabitans 30035177 AWJ20_3184 CDS AWJ20_3184 NC_031674.1 3525514 3526662 R uncharacterized protein complement(3525514..3526662) Sugiyamaella lignohabitans 30035178 AWJ20_3185 CDS ACK1 NC_031674.1 3528696 3532019 D Protein that functions in the cell wall integrity pathway; functions upstream of Pkc1p; GFP-fusion protein expression is induced in response to the DNA-damaging agent MMS; non-tagged Ack1p is detected in purified mitochondria; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 18806213]; GO_process: GO:0009967 - positive regulation of signal transduction [Evidence IMP] [PMID 18806213]; Ack1p 3528696..3532019 Sugiyamaella lignohabitans 30035179 AWJ20_3186 CDS MIT1 NC_031674.1 3533103 3535172 R Transcriptional regulator of pseudohyphal growth; protein with sequence similarity to S. pombe gti1+ (gluconate transport inducer 1) and C. albicans Wor1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mit1p complement(3533103..3535172) Sugiyamaella lignohabitans 30035180 AWJ20_3187 CDS AWJ20_3187 NC_031674.1 3543436 3545394 D uncharacterized protein 3543436..3545394 Sugiyamaella lignohabitans 30035181 AWJ20_3188 CDS SAT4 NC_031674.1 3548269 3550014 D serine/threonine protein kinase SAT4 3548269..3550014 Sugiyamaella lignohabitans 30035182 AWJ20_3189 CDS TPK2 NC_031674.1 3550561 3552222 R cAMP-dependent protein kinase catalytic subunit; promotes vegetative growth in response to nutrients via the Ras-cAMP signaling pathway; partially redundant with Tpk1p and Tpk3p; localizes to P-bodies during stationary phase; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005952 - cAMP-dependent protein kinase complex [Evidence IDA,IPI] [PMID 12024012]; GO_component: GO:0005952 - cAMP-dependent protein kinase complex [Evidence IGI] [PMID 3036373]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12024012]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18417610]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004691 - cAMP-dependent protein kinase activity [Evidence IEA]; GO_function: GO:0004691 - cAMP-dependent protein kinase activity [Evidence IDA] [PMID 12024012]; GO_function: GO:0004691 - cAMP-dependent protein kinase activity [Evidence IGI,ISS] [PMID 3036373]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0007265 - Ras protein signal transduction [Evidence IGI,ISS] [PMID 3036373]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 12150916]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0010737 - protein kinase A signaling [Evidence IGI] [PMID 20133652]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 12024012]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; cAMP-dependent protein kinase catalytic subunit TPK2 complement(3550561..3552222) Sugiyamaella lignohabitans 30035183 AWJ20_3190 CDS AWJ20_3190 NC_031674.1 3554220 3555143 R uncharacterized protein complement(3554220..3555143) Sugiyamaella lignohabitans 30035185 AWJ20_3191 CDS AWJ20_3191 NC_031674.1 3561422 3562117 D uncharacterized protein 3561422..3562117 Sugiyamaella lignohabitans 30035186 AWJ20_3192 CDS COG8 NC_031674.1 3562267 3563559 R Component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IPI] [PMID 11703943]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20065092]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 11703943]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Cog8p complement(3562267..3563559) Sugiyamaella lignohabitans 30035187 AWJ20_3193 CDS AWJ20_3193 NC_031674.1 3567513 3568946 R uncharacterized protein complement(3567513..3568946) Sugiyamaella lignohabitans 30035188 AWJ20_3194 CDS VMA6 NC_031674.1 3572479 3573252 D Subunit d of the V0 integral membrane domain of V-ATPase; part of the electrogenic proton pump found in the endomembrane system; required for V1 domain assembly on the vacuolar membrane; the V0 integral membrane domain of vacuolar H+-ATPase (V-ATPase) has five subunits; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8509410]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033179 - proton-transporting V-type ATPase, V0 domain [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence TAS] [PMID 9442887]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IDA,IMP] [PMID 8509410]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; GO_process: GO:0007034 - vacuolar transport [Evidence IDA,IMP] [PMID 8509410]; H(+)-transporting V0 sector ATPase subunit d 3572479..3573252 Sugiyamaella lignohabitans 30035189 AWJ20_3195 CDS UBP13 NC_031674.1 3573549 3575966 R Ubiquitin-specific protease that cleaves Ub-protein fusions; UBP13 has a paralog, UBP9, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 11076031]; GO_process: GO:0010995 - free ubiquitin chain depolymerization [Evidence IMP] [PMID 11076031]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp13p complement(3573549..3575966) Sugiyamaella lignohabitans 30035190 AWJ20_3196 CDS SKT5 NC_031674.1 3581437 3583515 D Activator of Chs3p (chitin synthase III) during vegetative growth; recruits Chs3p to the bud neck via interaction with Bni4p; SKT5 has a paralog, SHC1, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15470103]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9314530]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 9314530]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IMP] [PMID 9234668]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IMP] [PMID 17142567]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IMP] [PMID 9234668]; Skt5p 3581437..3583515 Sugiyamaella lignohabitans 30035191 AWJ20_3197 CDS AWJ20_3197 NC_031674.1 3583776 3584261 D uncharacterized protein 3583776..3584261 Sugiyamaella lignohabitans 30035192 AWJ20_3198 CDS SCW11 NC_031674.1 3586674 3587921 D Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based on its regulation by Ste12p; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 9748433]; GO_function: GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity [Evidence ISS] [PMID 9748433]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 9748433]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Scw11p 3586674..3587921 Sugiyamaella lignohabitans 30035193 AWJ20_3199 CDS COT1 NC_031674.1 3589312 3590822 D Vacuolar transporter that mediates zinc transport into the vacuole; overexpression confers resistance to cobalt and rhodium; protein abundance increases in response to DNA replication stress; COT1 has a paralog, ZRC1, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 9712830]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IMP] [PMID 1508175]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence ISS] [PMID 9075641]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IGI] [PMID 8058041]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006882 - cellular zinc ion homeostasis [Evidence IMP] [PMID 10856230]; GO_process: GO:0006824 - cobalt ion transport [Evidence IMP] [PMID 1508175]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IGI] [PMID 8058041]; metal cation transporter COT1 join(3589312..3589336,3589711..3590822) Sugiyamaella lignohabitans 30035194 AWJ20_3200 CDS FUR4 NC_031674.1 3596809 3598050 D Plasma membrane localized uracil permease; expression is tightly regulated by uracil levels and environmental cues; conformational alterations induced by unfolding or substrate binding result in Rsp5p-mediated ubiquitination and degradation; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 15536122]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8948441]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0015505 - uracil:cation symporter activity [Evidence IDA] [PMID 8948441]; GO_process: GO:0015851 - nucleobase transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 8948441]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0015857 - uracil transport [Evidence IDA] [PMID 8948441]; Fur4p 3596809..3598050 Sugiyamaella lignohabitans 30035197 AWJ20_3201 CDS AWJ20_3201 NC_031674.1 3599232 3599696 D uncharacterized protein 3599232..3599696 Sugiyamaella lignohabitans 30035198 AWJ20_3202 CDS DUF1 NC_031674.1 3600031 3602238 D Ubiquitin-binding hypothetical protein; contains one WD40 repeat in a beta-propeller fold; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; homolog of human WDR48/UAF1, which is involved in regulating the Fanconi anemia pathway; deletion mutant is sensitive to various chemicals including phenanthroline, sanguinarine, and nordihydroguaiaretic acid; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0008150 - biological_process [Evidence ND]; Duf1p 3600031..3602238 Sugiyamaella lignohabitans 30035199 AWJ20_3203 CDS RIB7 NC_031674.1 3608521 3609288 R Diaminohydroxyphoshoribosylaminopyrimidine deaminase; catalyzes the second step of the riboflavin biosynthesis pathway; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]; GO_function: GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IDA] [PMID 23620735]; GO_function: GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IMP] [PMID 4555411]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 5366000]; Rib7p complement(3608521..3609288) Sugiyamaella lignohabitans 30035200 AWJ20_3204 CDS PRE7 NC_031674.1 3609695 3610405 D Beta 6 subunit of the 20S proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019774 - proteasome core complex, beta-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IC] [PMID 9087403]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; proteasome core particle subunit beta 6 3609695..3610405 Sugiyamaella lignohabitans 30035201 AWJ20_3205 CDS AWJ20_3205 NC_031674.1 3612246 3613460 R microfibrillar-associated protein family protein complement(3612246..3613460) Sugiyamaella lignohabitans 30035202 AWJ20_3206 CDS WBP1 NC_031674.1 3614270 3615637 R Beta subunit of the oligosaccharyl transferase glycoprotein complex; required for N-linked glycosylation of proteins in the endoplasmic reticulum; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 12860997]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 1724755]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IMP] [PMID 12974639]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 1724755]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 10358084]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 16297388]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 9405463]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IDA] [PMID 1724755]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IPI] [PMID 9405463]; GO_process: GO:0018279 - protein N-linked glycosylation via asparagine [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; Wbp1p complement(3614270..3615637) Sugiyamaella lignohabitans 30035203 AWJ20_3207 CDS INP53 NC_031674.1 3616502 3619438 R Polyphosphatidylinositol phosphatase; dephosphorylates multiple phosphatidylinositol phosphates; involved in trans Golgi network-to-early endosome pathway; hyperosmotic stress causes translocation to actin patches; contains Sac1 and 5-ptase domains; INP53 has a paralog, INP52, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11094088]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11094088]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 9560389]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0043813 - phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IEA]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IMP] [PMID 9438131]; GO_function: GO:0043812 - phosphatidylinositol-4-phosphate phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA] [PMID 10224048]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 9438131]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; phosphatidylinositol-3-/phosphoinositide 5-phosphatase INP53 complement(3616502..3619438) Sugiyamaella lignohabitans 30035204 AWJ20_3208 CDS INP53 NC_031674.1 3619545 3620177 R Polyphosphatidylinositol phosphatase; dephosphorylates multiple phosphatidylinositol phosphates; involved in trans Golgi network-to-early endosome pathway; hyperosmotic stress causes translocation to actin patches; contains Sac1 and 5-ptase domains; INP53 has a paralog, INP52, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11094088]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11094088]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 9560389]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0043813 - phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IEA]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IMP] [PMID 9438131]; GO_function: GO:0043812 - phosphatidylinositol-4-phosphate phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA] [PMID 10224048]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 9438131]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; phosphatidylinositol-3-/phosphoinositide 5-phosphatase INP53 complement(3619545..3620177) Sugiyamaella lignohabitans 30035205 AWJ20_3209 CDS AWJ20_3209 NC_031674.1 3621507 3622361 D NADP(+)-dependent serine dehydrogenase and carbonyl reductase; acts on serine, L-allo-threonine, and other 3-hydroxy acids; green fluorescent protein fusion protein localizes to the cytoplasm and nucleus; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 18630881]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_function: GO:0031132 - serine 3-dehydrogenase activity [Evidence IDA] [PMID 12535615]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IC] [PMID 12535615]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; oxidoreductase 3621507..3622361 Sugiyamaella lignohabitans 30035206 AWJ20_3210 CDS AWJ20_3210 NC_031674.1 3622844 3623701 D NADP(+)-dependent serine dehydrogenase and carbonyl reductase; acts on serine, L-allo-threonine, and other 3-hydroxy acids; green fluorescent protein fusion protein localizes to the cytoplasm and nucleus; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 18630881]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_function: GO:0031132 - serine 3-dehydrogenase activity [Evidence IDA] [PMID 12535615]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IC] [PMID 12535615]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; oxidoreductase 3622844..3623701 Sugiyamaella lignohabitans 30035208 AWJ20_3211 CDS GYP7 NC_031674.1 3624649 3626910 D GTPase-activating protein for yeast Rab family members; members include Ypt7p (most effective), Ypt1p, Ypt31p, and Ypt32p (in vitro); involved in vesicle mediated protein trafficking; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IDA,IMP,IPI,ISS] [PMID 10508155]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 18809726]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IDA] [PMID 11118206]; Gyp7p 3624649..3626910 Sugiyamaella lignohabitans 30035209 AWJ20_3212 CDS RNR1 NC_031674.1 3632368 3634773 D Major isoform of large subunit of ribonucleotide-diphosphate reductase; the RNR complex catalyzes rate-limiting step in dNTP synthesis, regulated by DNA replication and DNA damage checkpoint pathways via localization of small subunits; relative distribution to the nucleus increases upon DNA replication stress; RNR1 has a paralog, RNR3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12732713]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9315670]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]; GO_component: GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IDA] [PMID 10716984]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IDA] [PMID 16537479]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA,IEA]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 10535923]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 10716984]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IDA] [PMID 11893751]; GO_function: GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IMP] [PMID 8552025]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA,IEA]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IDA] [PMID 10535923]; GO_process: GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IDA] [PMID 5459124]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; ribonucleotide-diphosphate reductase subunit RNR1 3632368..3634773 Sugiyamaella lignohabitans 30035210 AWJ20_3213 CDS PTP1 NC_031674.1 3634970 3636352 R tyrosine protein phosphatase PTP1 complement(3634970..3636352) Sugiyamaella lignohabitans 30035211 AWJ20_3214 CDS BRE4 NC_031674.1 3636781 3640173 R Zinc finger protein containing five transmembrane domains; null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 11169758]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 11378903]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Bre4p complement(3636781..3640173) Sugiyamaella lignohabitans 30035212 AWJ20_3215 CDS VID27 NC_031674.1 3640974 3643436 R Cytoplasmic hypothetical protein; possibly involved in vacuolar protein degradation; not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase); null mutants exhibit normal growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Vid27p complement(3640974..3643436) Sugiyamaella lignohabitans 30035213 AWJ20_3216 CDS RRG9 NC_031674.1 3643999 3644772 D hypothetical protein; null mutant lacks mitochondrial DNA and cannot grow on glycerol; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence ISS] [PMID 10029995]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 19751518]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 10029995]; Rrg9p 3643999..3644772 Sugiyamaella lignohabitans 30035214 AWJ20_3217 CDS IES2 NC_031674.1 3645934 3647169 D Protein that associates with the INO80 chromatin remodeling complex; associates with the INO80 complex under low-salt conditions; essential for growth under anaerobic conditions; protein abundance increases in response to DNA replication stress; GO_component: GO:0031011 - Ino80 complex [Evidence IEA]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ies2p 3645934..3647169 Sugiyamaella lignohabitans 30035215 AWJ20_3219 CDS AWJ20_3219 NC_031674.1 3647881 3650241 D Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein 3647881..3650241 Sugiyamaella lignohabitans 30035217 AWJ20_3222 CDS AWJ20_3222 NC_031674.1 3655003 3656094 D uncharacterized protein 3655003..3656094 Sugiyamaella lignohabitans 30035221 AWJ20_3223 CDS AWJ20_3223 NC_031674.1 3656193 3657086 R uncharacterized protein complement(3656193..3657086) Sugiyamaella lignohabitans 30035222 AWJ20_3224 CDS AWJ20_3224 NC_031674.1 3658297 3658842 D uncharacterized protein 3658297..3658842 Sugiyamaella lignohabitans 30035223 AWJ20_3227 CDS GIT1 NC_031674.1 3665388 3666929 D Plasma membrane permease; mediates uptake of glycerophosphoinositol and glycerophosphocholine as sources of the nutrients inositol and phosphate; expression and transport rate are regulated by phosphate and inositol availability; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16924500]; GO_component: GO:0005886 - plasma membrane [Evidence IMP] [PMID 9691030]; GO_function: GO:0015169 - glycerol-3-phosphate transmembrane transporter activity [Evidence IGI,IMP] [PMID 20133652]; GO_function: GO:0001406 - glycerophosphodiester transmembrane transporter activity [Evidence IDA] [PMID 16924500]; GO_function: GO:0001406 - glycerophosphodiester transmembrane transporter activity [Evidence IMP] [PMID 9691030]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015794 - glycerol-3-phosphate transport [Evidence IGI,IMP] [PMID 20133652]; GO_process: GO:0001407 - glycerophosphodiester transport [Evidence IDA] [PMID 16924500]; GO_process: GO:0001407 - glycerophosphodiester transport [Evidence IMP] [PMID 9691030]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 9691030]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Git1p 3665388..3666929 Sugiyamaella lignohabitans 30035226 AWJ20_3228 CDS ENA5 NC_031674.1 3667038 3670274 R Protein with similarity to P-type ATPase sodium pumps; member of the Na+ efflux ATPase family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 7664728]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence ISS] [PMID 7664728]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008554 - sodium-exporting ATPase activity, phosphorylative mechanism [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0035725 - sodium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006814 - sodium ion transport [Evidence IEA]; GO_process: GO:0006814 - sodium ion transport [Evidence ISS] [PMID 7664728]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 7664728]; GO_process: GO:0006810 - transport [Evidence IEA]; putative Na(+)-exporting P-type ATPase ENA5 complement(3667038..3670274) Sugiyamaella lignohabitans 30035227 AWJ20_3229 CDS YDJ1 NC_031674.1 3671466 3672569 D Type I HSP40 co-chaperone; involved in regulation of HSP90 and HSP70 functions; critical for determining cell size at Start as a function of growth rate; involved in protein translocation across membranes; member of the DnaJ family; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 1869583]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8144572]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 1869583]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 1400408]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 15342786]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 9774392]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 10567418]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 15342786]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9674429]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 1473150]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IMP] [PMID 1729605]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; type I HSP40 co-chaperone YDJ1 3671466..3672569 Sugiyamaella lignohabitans 30035228 AWJ20_3230 CDS CBF5 NC_031674.1 3672785 3674236 R Pseudouridine synthase catalytic subunit of box H/ACA snoRNPs; acts on both large and small rRNAs and on snRNA U2; mutations in human ortholog dyskerin cause the disorder dyskeratosis congenita; small nucleolar ribonucleoprotein particles are also known as snoRNPs; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0031429 - box H/ACA snoRNP complex [Evidence IPI] [PMID 9472021]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IC] [PMID 9472021]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA] [PMID 15962000]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence ISA] [PMID 8710514]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IMP] [PMID 9472021]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0000495 - box H/ACA snoRNA 3'-end processing [Evidence IMP] [PMID 15964797]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 9472021]; GO_process: GO:0031118 - rRNA pseudouridine synthesis [Evidence IMP] [PMID 9472021]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0031120 - snRNA pseudouridine synthesis [Evidence IDA,IMP] [PMID 15962000]; pseudouridine synthase CBF5 complement(3672785..3674236) Sugiyamaella lignohabitans 30035230 AWJ20_3231 CDS STP22 NC_031674.1 3674628 3675935 R Component of the ESCRT-I complex; ESCRT-I is involved in ubiquitin-dependent sorting of proteins into the endosome; prevents polyubiquitination of the arrestin-related protein Rim8p, thereby directing its monoubiquitination by Rsp5p; homologous to the mouse and human Tsg101 tumor susceptibility gene; mutants exhibit a Class E Vps phenotype; GO_component: GO:0000813 - ESCRT I complex [Evidence IDA] [PMID 15044434]; GO_component: GO:0000813 - ESCRT I complex [Evidence IPI] [PMID 16615894]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0009898 - cytoplasmic side of plasma membrane [Evidence IDA] [PMID 20028738]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA,IPI] [PMID 11511343]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 19380877]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 17145965]; GO_process: GO:1902915 - negative regulation of protein polyubiquitination [Evidence IMP] [PMID 23645667]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP,IPI] [PMID 11511343]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 11511343]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ubiquitin-binding ESCRT-I subunit protein STP22 complement(3674628..3675935) Sugiyamaella lignohabitans 30035231 AWJ20_3232 CDS ADR1 NC_031674.1 3681197 3683188 D Zinc finger protein 420 3681197..3683188 Sugiyamaella lignohabitans 30035232 AWJ20_3233 CDS SPS19 NC_031674.1 3683378 3684190 R Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p complement(3683378..3684190) Sugiyamaella lignohabitans 30035233 AWJ20_3234 CDS NEM1 NC_031674.1 3686347 3687354 D Nem1-Spo7 phosphatase catalytic subunit NEM1 3686347..3687354 Sugiyamaella lignohabitans 30035234 AWJ20_3235 CDS KIP1 NC_031674.1 3687449 3690301 R Kinesin-related motor protein; required for mitotic spindle assembly, chromosome segregation, and 2 micron plasmid partitioning; functionally redundant with Cin8p for chromosomal but not plasmid functions; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 1618910]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IGI] [PMID 1618910]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007019 - microtubule depolymerization [Evidence IMP] [PMID 19041752]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IGI] [PMID 7860634]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IMP] [PMID 9813090]; GO_process: GO:0030541 - plasmid partitioning [Evidence IMP] [PMID 19364922]; GO_process: GO:0090307 - spindle assembly involved in mitosis [Evidence IMP] [PMID 9813090]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 1618897]; GO_process: GO:0000073 - spindle pole body separation [Evidence IGI] [PMID 1618910]; Kip1p complement(3687449..3690301) Sugiyamaella lignohabitans 30035235 AWJ20_3236 CDS VMA5 NC_031674.1 3692379 3693545 R Subunit C of the V1 peripheral membrane domain of V-ATPase; part of the electrogenic proton pump found throughout the endomembrane system; required for the V1 domain to assemble onto the vacuolar membrane; the V1 peripheral membrane domain of vacuolar H+-ATPase (V-ATPase) has eight subunits; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence TAS] [PMID 11717306]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033180 - proton-transporting V-type ATPase, V1 domain [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 9442887]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 10224039]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 9442887]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; H(+)-transporting V1 sector ATPase subunit C complement(3692379..3693545) Sugiyamaella lignohabitans 30035236 AWJ20_3238 CDS MCH5 NC_031674.1 3697577 3698941 R Plasma membrane riboflavin transporter; facilitates the uptake of vitamin B2; required for FAD-dependent processes; sequence similarity to mammalian monocarboxylate permeases, however mutants are not deficient in monocarboxylate transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16204239]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0032217 - riboflavin transporter activity [Evidence IGI] [PMID 16204239]; GO_process: GO:0032218 - riboflavin transport [Evidence IGI] [PMID 16204239]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mch5p complement(3697577..3698941) Sugiyamaella lignohabitans 30035238 AWJ20_3240 CDS DAL81 NC_031674.1 3701020 3703629 D Positive regulator of genes in multiple nitrogen degradation pathways; contains DNA binding domain but does not appear to bind the dodecanucleotide sequence present in the promoter region of many genes involved in allantoin catabolism; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 20581295]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0001128 - RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IPI] [PMID 10906145]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 17603098]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 10906145]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7899074]; GO_process: GO:1901717 - positive regulation of gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:1901714 - positive regulation of urea catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Dal81p 3701020..3703629 Sugiyamaella lignohabitans 30035241 AWJ20_3241 CDS CHA1 NC_031674.1 3703757 3704743 R Catabolic L-serine (L-threonine) deaminase; catalyzes the degradation of both L-serine and L-threonine; required to use serine or threonine as the sole nitrogen source, transcriptionally induced by serine and threonine; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]; GO_function: GO:0003941 - L-serine ammonia-lyase activity [Evidence IDA] [PMID 7042346]; GO_function: GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA]; GO_function: GO:0004794 - L-threonine ammonia-lyase activity [Evidence IDA] [PMID 7042346]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0006565 - L-serine catabolic process [Evidence IGI] [PMID 7042346]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0006567 - threonine catabolic process [Evidence IGI] [PMID 7042346]; L-serine/L-threonine ammonia-lyase CHA1 complement(3703757..3704743) Sugiyamaella lignohabitans 30035242 AWJ20_3244 CDS AWJ20_3244 NC_031674.1 3708355 3709245 R uncharacterized protein complement(3708355..3709245) Sugiyamaella lignohabitans 30035245 AWJ20_3245 CDS CDC24 NC_031674.1 3711994 3714891 R Rho family guanine nucleotide exchange factor CDC24 complement(3711994..3714891) Sugiyamaella lignohabitans 30035246 AWJ20_3246 CDS ERV46 NC_031674.1 3717290 3718477 R Protein localized to COPII-coated vesicles; forms a complex with Erv41p; involved in the membrane fusion stage of transport; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 11157978]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11157978]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Erv46p complement(3717290..3718477) Sugiyamaella lignohabitans 30035247 AWJ20_3247 CDS AWJ20_3247 NC_031674.1 3718833 3720725 R uncharacterized protein complement(3718833..3720725) Sugiyamaella lignohabitans 30035248 AWJ20_3248 CDS AWJ20_3248 NC_031674.1 3721095 3722579 D uncharacterized protein 3721095..3722579 Sugiyamaella lignohabitans 30035249 AWJ20_3249 CDS PRC1 NC_031674.1 3723084 3724334 R Vacuolar carboxypeptidase Y (proteinase C, CPY); broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IDA,IMP] [PMID 8679540]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IDA,IMP] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence TAS] [PMID 8789256]; carboxypeptidase C PRC1 complement(3723084..3724334) Sugiyamaella lignohabitans 30035250 AWJ20_3250 CDS AWJ20_3250 NC_031674.1 3725427 3727475 D uncharacterized protein 3725427..3727475 Sugiyamaella lignohabitans 30035252 AWJ20_3251 CDS AWJ20_3251 NC_031674.1 3727546 3728964 R Putative X-Pro aminopeptidase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YFR006W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; putative Xaa-Pro dipeptidase complement(3727546..3728964) Sugiyamaella lignohabitans 30035253 AWJ20_3252 CDS NOP58 NC_031674.1 3730067 3731602 R Protein involved in producing mature rRNAs and snoRNAs; involved in pre-rRNA processing, 18S rRNA synthesis, and snoRNA synthesis; component of the small subunit processome complex, which is required for processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 10094313]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IPI] [PMID 10733567]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 11081632]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9372940]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10094313]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10094313]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10094313]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; RNA-processing protein NOP58 complement(3730067..3731602) Sugiyamaella lignohabitans 30035254 AWJ20_3253 CDS AWJ20_3253 NC_031674.1 3732391 3733734 D uncharacterized protein 3732391..3733734 Sugiyamaella lignohabitans 30035255 AWJ20_3254 CDS AMS1 NC_031674.1 3734112 3737453 D Vacuolar alpha mannosidase; involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 3281936]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence IEA,IEA]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence ISS] [PMID 2675832]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence IDA] [PMID 3281936]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0015923 - mannosidase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence ISS] [PMID 2675832]; GO_process: GO:0006013 - mannose metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009313 - oligosaccharide catabolic process [Evidence IMP] [PMID 12723970]; Ams1p 3734112..3737453 Sugiyamaella lignohabitans 30035256 AWJ20_3255 CDS DGK1 NC_031674.1 3738023 3739027 D Diacylglycerol kinase; localized to the endoplasmic reticulum (ER); overproduction induces enlargement of ER-like membrane structures and suppresses a temperature-sensitive sly1 mutation; contains a CTP transferase domain; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11481671]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 11481671]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0004143 - diacylglycerol kinase activity [Evidence IDA] [PMID 18458075]; GO_function: GO:0004143 - diacylglycerol kinase activity [Evidence IDA] [PMID 18458076]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006654 - phosphatidic acid biosynthetic process [Evidence IMP] [PMID 18458075]; GO_process: GO:0006654 - phosphatidic acid biosynthetic process [Evidence IDA] [PMID 18458076]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Dgk1p 3738023..3739027 Sugiyamaella lignohabitans 30035257 AWJ20_3256 CDS MTC1 NC_031674.1 3739191 3740561 R hypothetical protein that may interact with ribosomes; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and to COPI-coated vesicles (early Golgi); mtc1 is synthetically lethal with cdc13-1; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IEA]; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mtc1p complement(3739191..3740561) Sugiyamaella lignohabitans 30035258 AWJ20_3257 CDS RPL20B NC_031674.1 3740999 3741439 R Ribosomal 60S subunit protein L20B; homologous to mammalian ribosomal protein L18A, no bacterial homolog; RPL20B has a paralog, RPL20A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23874617]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 23874617]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 23874617]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L20B complement(3740999..3741439) Sugiyamaella lignohabitans 30035259 AWJ20_3258 CDS SPS4 NC_031674.1 3742493 3743620 R Protein whose expression is induced during sporulation; not required for sporulation; heterologous expression in E. coli induces the SOS response that senses DNA damage; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IEP] [PMID 3540611]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps4p complement(3742493..3743620) Sugiyamaella lignohabitans 30035260 AWJ20_3259 CDS HXT5 NC_031674.1 3746592 3748229 D hexose transporter HXT5 3746592..3748229 Sugiyamaella lignohabitans 30035261 AWJ20_3260 CDS SPS19 NC_031674.1 3749329 3750072 R Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p complement(3749329..3750072) Sugiyamaella lignohabitans 30035263 AWJ20_3261 CDS RPO21 NC_031674.1 3750695 3755716 R RNA polymerase II largest subunit B220; part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IEA]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001055 - RNA polymerase II activity [Evidence IDA] [PMID 8288647]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3299050]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0019985 - translesion synthesis [Evidence IMP] [PMID 22405652]; DNA-directed RNA polymerase II core subunit RPO21 complement(3750695..3755716) Sugiyamaella lignohabitans 30035264 AWJ20_3262 CDS VBA5 NC_031674.1 3757576 3759360 R Plasma membrane protein of the Major Facilitator Superfamily (MFS); involved in amino acid uptake and drug sensitivity; VBA5 has a paralog, VBA3, that arose from a segmental duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23047103]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015809 - arginine transport [Evidence IGI,IMP] [PMID 23047103]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vba5p complement(3757576..3759360) Sugiyamaella lignohabitans 30035265 AWJ20_3263 CDS SMT3 NC_031674.1 3761595 3762059 R Ubiquitin-like protein of the SUMO family; conjugated to lysine residues of target proteins; associates with transcriptionally active genes; regulates chromatid cohesion, chromosome segregation, APC-mediated proteolysis, DNA replication and septin ring dynamics; phosphorylated at Ser2; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 16782016]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10364461]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10579719]; GO_component: GO:0005940 - septin ring [Evidence IDA] [PMID 10364461]; GO_component: GO:0005940 - septin ring [Evidence IDA] [PMID 10579719]; GO_function: GO:0031386 - protein tag [Evidence IDA] [PMID 10364461]; GO_function: GO:0031386 - protein tag [Evidence IDA] [PMID 10579719]; GO_process: GO:0016925 - protein sumoylation [Evidence IDA] [PMID 9312010]; SUMO family protein SMT3 complement(3761595..3762059) Sugiyamaella lignohabitans 30035266 AWJ20_3264 CDS PSP1 NC_031674.1 3765801 3768386 D Asn and gln rich hypothetical protein; high-copy suppressor of POL1 (DNA polymerase alpha) and partial suppressor of CDC2 (polymerase delta) and CDC6 (pre-RC loading factor) mutations; overexpression results in growth inhibition; PSP1 has a paralog, YLR177W, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23222640]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0008150 - biological_process [Evidence ND]; Psp1p 3765801..3768386 Sugiyamaella lignohabitans 30035267 AWJ20_3265 CDS AWJ20_3265 NC_031674.1 3772183 3772548 R uncharacterized protein complement(3772183..3772548) Sugiyamaella lignohabitans 30035268 AWJ20_3266 CDS CIT1 NC_031674.1 3773704 3774897 R Citrate synthase; catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate; the rate-limiting enzyme of the TCA cycle; nuclear encoded mitochondrial protein; CIT1 has a paralog, CIT2, that arose from the whole genome duplication; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_function: GO:0004108 - citrate (Si)-synthase activity [Evidence IEA,IEA]; GO_function: GO:0004108 - citrate (Si)-synthase activity [Evidence IDA,IMP] [PMID 17570335]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0046912 - transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer [Evidence IEA]; GO_process: GO:0046356 - acetyl-CoA catabolic process [Evidence IDA,IMP] [PMID 17570335]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006101 - citrate metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; citrate (Si)-synthase CIT1 complement(3773704..3774897) Sugiyamaella lignohabitans 30035269 AWJ20_3267 CDS PNS1 NC_031674.1 3776709 3778352 D hypothetical protein; has similarity to Torpedo californica tCTL1p, which is postulated to be a choline transporter, neither null mutation nor overexpression affects choline transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 10923024]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IMP] [PMID 15002745]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006810 - transport [Evidence IEA]; Pns1p 3776709..3778352 Sugiyamaella lignohabitans 30035270 AWJ20_3268 CDS SET5 NC_031674.1 3778486 3779724 R Methyltransferase involved in methylation of histone H4 Lys5, -8, -12; S-adenosylmethionine-dependent; zinc-finger protein, contains one canonical and two unusual fingers in unusual arrangements; deletion enhances replication of positive-strand RNA virus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 22343720]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA] [PMID 22343720]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0034968 - histone lysine methylation [Evidence IDA,IMP] [PMID 22343720]; GO_process: GO:0032259 - methylation [Evidence IEA]; Set5p complement(3778486..3779724) Sugiyamaella lignohabitans 30035271 AWJ20_3269 CDS FMP10 NC_031674.1 3780060 3780746 D hypothetical protein; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fmp10p 3780060..3780746 Sugiyamaella lignohabitans 30035272 AWJ20_3270 CDS MTR10 NC_031674.1 3780794 3783541 R Nuclear import receptor; mediates the nuclear localization of proteins involved in mRNA-nucleus export; promotes dissociation of mRNAs from the nucleus-cytoplasm mRNA shuttling protein Npl3p; required for retrograde import of mature tRNAs; relocalizes from cytoplasm to the nuclear periphery upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9412460]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9545233]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008139 - nuclear localization sequence binding [Evidence IPI] [PMID 9545233]; GO_process: GO:0006404 - RNA import into nucleus [Evidence IMP] [PMID 16040803]; GO_process: GO:0006404 - RNA import into nucleus [Evidence IMP] [PMID 17409072]; GO_process: GO:0006403 - RNA localization [Evidence IMP] [PMID 12167699]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006609 - mRNA-binding (hnRNP) protein import into nucleus [Evidence IMP,IPI,ISS] [PMID 9412460]; GO_process: GO:0006609 - mRNA-binding (hnRNP) protein import into nucleus [Evidence IMP,IPI,ISS] [PMID 9545233]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,IPI,ISS] [PMID 9412460]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,IPI,ISS] [PMID 9545233]; GO_process: GO:0051031 - tRNA transport [Evidence IMP] [PMID 17409072]; GO_process: GO:0051031 - tRNA transport [Evidence IMP] [PMID 20032305]; Mtr10p complement(3780794..3783541) Sugiyamaella lignohabitans 30035274 AWJ20_3271 CDS FAU1 NC_031674.1 3784793 3785149 R 5,10-methenyltetrahydrofolate synthetase; involved in folic acid biosynthesis; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA,IEA]; GO_function: GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IDA] [PMID 11923304]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IDA] [PMID 11923304]; 5-formyltetrahydrofolate cyclo-ligase complement(3784793..3785149) Sugiyamaella lignohabitans 30035275 AWJ20_3272 CDS BAT2 NC_031674.1 3786026 3787243 D Cytosolic branched-chain amino acid (BCAA) aminotransferase; preferentially involved in BCAA catabolism; homolog of murine ECA39; highly expressed during stationary phase and repressed during logarithmic phase; BAT2 has a paralog, BAT1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21267457]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0052656 - L-isoleucine transaminase activity [Evidence IEA]; GO_function: GO:0052654 - L-leucine transaminase activity [Evidence IEA]; GO_function: GO:0052655 - L-valine transaminase activity [Evidence IEA]; GO_function: GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA,IEA]; GO_function: GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IDA] [PMID 8798704]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IDA,IMP] [PMID 8798704]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IMP] [PMID 8702755]; GO_process: GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]; branched-chain-amino-acid transaminase BAT2 3786026..3787243 Sugiyamaella lignohabitans 30035276 AWJ20_3273 CDS AWJ20_3273 NC_031674.1 3787361 3789622 R uncharacterized protein complement(3787361..3789622) Sugiyamaella lignohabitans 30035277 AWJ20_3274 CDS HYM1 NC_031674.1 3792951 3793610 D Component of the RAM signaling network; is involved in regulation of Ace2p activity and cellular morphogenesis, interacts with Kic1p and Sog2p, localizes to sites of polarized growth during budding and during the mating response; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 12972564]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 12972564]; GO_component: GO:0005622 - intracellular [Evidence IDA] [PMID 11259593]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12972564]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 12972564]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 11259593]; GO_process: GO:0008360 - regulation of cell shape [Evidence IGI] [PMID 11259593]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 12972564]; Hym1p 3792951..3793610 Sugiyamaella lignohabitans 30035278 AWJ20_3275 CDS VPS36 NC_031674.1 3793772 3794938 R Component of the ESCRT-II complex; contains the GLUE (GRAM Like Ubiquitin binding in EAP45) domain which is involved in interactions with ESCRT-I and ubiquitin-dependent sorting of proteins into the endosome; plays a role in the formation of mutant huntingtin (Htt) aggregates in yeast; GO_component: GO:0000814 - ESCRT II complex [Evidence IDA] [PMID 12194858]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 15029239]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 19380877]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000433 - negative regulation of transcription from RNA polymerase II promoter by glucose [Evidence IMP] [PMID 11278625]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 12194858]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-II subunit protein VPS36 complement(3793772..3794938) Sugiyamaella lignohabitans 30035279 AWJ20_3276 CDS PET123 NC_031674.1 3795846 3796742 D Mitochondrial ribosomal protein of the small subunit; PET123 exhibits genetic interactions with PET122, which encodes a COX3 mRNA-specific translational activator; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; mitochondrial 37S ribosomal protein PET123 3795846..3796742 Sugiyamaella lignohabitans 30035280 AWJ20_3277 CDS MUS81 NC_031674.1 3796990 3798735 R Subunit of structure-specific Mms4p-Mus81p endonuclease; cleaves branched DNA; involved in DNA repair, replication fork stability, and joint molecule formation/resolution during meiotic recombination; promotes template switching during break-induced replication (BIR), causing non-reciprocal translocations (NRTs); helix-hairpin-helix protein; phosphorylation of non-catalytic subunit Mms4p by Cdc28p and Cdcp during mitotic cell cycle activates function of Mms4p-Mus81p; GO_component: GO:0048476 - Holliday junction resolvase complex [Evidence IDA] [PMID 17363897]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP,IPI] [PMID 10905349]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IDA] [PMID 17363897]; GO_function: GO:0004520 - endodeoxyribonuclease activity [Evidence IDA] [PMID 11641278]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA,IEA]; GO_process: GO:0006259 - DNA metabolic process [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI] [PMID 12032096]; GO_process: GO:0006265 - DNA topological change [Evidence IGI] [PMID 11139495]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 11139495]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IGI,IMP] [PMID 23071463]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IGI] [PMID 11641278]; GO_process: GO:0000712 - resolution of meiotic recombination intermediates [Evidence IGI] [PMID 18691964]; Mus81p complement(3796990..3798735) Sugiyamaella lignohabitans 30035281 AWJ20_3278 CDS AWJ20_3278 NC_031674.1 3799800 3802406 D putative RNA-binding protein C3H8.09c 3799800..3802406 Sugiyamaella lignohabitans 30035282 AWJ20_3279 CDS PXA2 NC_031674.1 3802563 3804221 R Subunit of a heterodimeric peroxisomal ABC transport complex; required for import of long-chain fatty acids into peroxisomes; similarity to human adrenoleukodystrophy transporter ABCD1 and ABCD2 and ALD-related proteins; mutations in ABCD1 cause X-linked adrenoleukodystrophy (X-ALD), a peroxisomal disorder; complex also includes Pxa1p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 9395310]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IDA] [PMID 9395310]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:1902001 - fatty acid transmembrane transport [Evidence IDA] [PMID 9395310]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette long-chain fatty acid transporter PXA2 complement(3802563..3804221) Sugiyamaella lignohabitans 30035283 AWJ20_3280 CDS CCP1 NC_031674.1 3805182 3806450 R Mitochondrial cytochrome-c peroxidase; degrades reactive oxygen species in mitochondria, involved in the response to oxidative stress; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IEA]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IMP] [PMID 10589830]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IDA] [PMID 17580971]; GO_function: GO:0004130 - cytochrome-c peroxidase activity [Evidence IDA,IMP] [PMID 21334283]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA,IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 10589830]; GO_process: GO:0042744 - hydrogen peroxide catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006979 - response to oxidative stress [Evidence IEA]; Ccp1p complement(3805182..3806450) Sugiyamaella lignohabitans 30035285 AWJ20_3281 CDS YAK1 NC_031674.1 3807159 3810446 R serine/threonine protein kinase YAK1 complement(3807159..3810446) Sugiyamaella lignohabitans 30035286 AWJ20_3282 CDS EAP1 NC_031674.1 3812506 3820308 R Enhanced Adherence to Polystyrene; similar to S. pombe predicted GPI-anchored SPBPJ4664.02; similar to RBT1; internal hexapeptide PATEST repeat region is expanded in allelic CaP19.8979; identical to C. albicans morphogenetic related gene CPH3 (AAM46085); no clear allele; putative cell wall adhesin complement(3812506..3820308) Sugiyamaella lignohabitans 30035287 AWJ20_3283 CDS PEX28 NC_031674.1 3822046 3823131 R Peroxisomal integral membrane peroxin; involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 12707309]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007031 - peroxisome organization [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IDA,IGI,IMP] [PMID 12707309]; Pex28p complement(3822046..3823131) Sugiyamaella lignohabitans 30035288 AWJ20_3284 CDS ERV41 NC_031674.1 3825015 3825821 D Protein localized to COPII-coated vesicles; forms a complex with Erv46p; involved in the membrane fusion stage of transport; has homology to human ERGIC2 (PTX1) protein; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0033116 - endoplasmic reticulum-Golgi intermediate compartment membrane [Evidence IEA]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 11157978]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 11157978]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Erv41p 3825015..3825821 Sugiyamaella lignohabitans 30035289 AWJ20_3285 CDS AWJ20_3285 NC_031674.1 3826010 3827938 R uncharacterized protein complement(3826010..3827938) Sugiyamaella lignohabitans 30035290 AWJ20_3286 CDS PTH1 NC_031674.1 3828987 3829406 D One of two mitochondrially-localized peptidyl-tRNA hydrolases; dispensable for respiratory growth on rich medium, but required for respiratory growth on minimal medium; see also PTH2; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IGI] [PMID 12475929]; GO_function: GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IDA] [PMID 12799450]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 12799450]; Pth1p 3828987..3829406 Sugiyamaella lignohabitans 30035291 AWJ20_3287 CDS AWJ20_3287 NC_031674.1 3830574 3830981 R uncharacterized protein complement(3830574..3830981) Sugiyamaella lignohabitans 30035292 AWJ20_3288 CDS AWJ20_3288 NC_031674.1 3834624 3835100 R uncharacterized protein complement(3834624..3835100) Sugiyamaella lignohabitans 30035293 AWJ20_3290 CDS ERG7 NC_031674.1 3836571 3838691 R Lanosterol synthase; an essential enzyme that catalyzes the cyclization of squalene 2,3-epoxide, a step in ergosterol biosynthesis; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 11706015]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016866 - intramolecular transferase activity [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000250 - lanosterol synthase activity [Evidence IEA]; GO_function: GO:0000250 - lanosterol synthase activity [Evidence IMP] [PMID 18842050]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; lanosterol synthase ERG7 complement(3836571..3838691) Sugiyamaella lignohabitans 30035296 AWJ20_3291 CDS AWJ20_3291 NC_031674.1 3838856 3840220 R uncharacterized protein complement(3838856..3840220) Sugiyamaella lignohabitans 30035297 AWJ20_3292 CDS STL1 NC_031674.1 3841410 3842375 R glucose-inactivated glycerol proton symporter STL1 complement(3841410..3842375) Sugiyamaella lignohabitans 30035298 AWJ20_3293 CDS AWJ20_3293 NC_031674.1 3843988 3844968 D uncharacterized protein 3843988..3844968 Sugiyamaella lignohabitans 30035299 AWJ20_3294 CDS GRE2 NC_031674.1 3845010 3845753 R 3-methylbutanal reductase and NADPH-dependent methylglyoxal reductase; stress induced (osmotic, ionic, oxidative, heat shock and heavy metals); regulated by the HOG pathway; restores resistance to glycolaldehyde by coupling reduction of glycolaldehyde to ethylene glycol and oxidation of NADPH to NADP+; protein abundance increases in response to DNA replication stress; methylglyoxal reductase (NADPH-dependent) is also known as D-lactaldehyde dehydrogenase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12206772]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12206772]; GO_function: GO:0046568 - 3-methylbutanol:NAD(P) oxidoreductase activity [Evidence IEA]; GO_function: GO:0046568 - 3-methylbutanol:NAD(P) oxidoreductase activity [Evidence IMP] [PMID 16999827]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0043892 - methylglyoxal reductase (NADPH-dependent) activity [Evidence IEA]; GO_function: GO:0043892 - methylglyoxal reductase (NADPH-dependent) activity [Evidence IDA] [PMID 12722185]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0008204 - ergosterol metabolic process [Evidence IGI,IMP] [PMID 16598690]; GO_process: GO:0030447 - filamentous growth [Evidence IMP] [PMID 16999827]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; methylglyoxal reductase (NADPH-dependent) GRE2 complement(3845010..3845753) Sugiyamaella lignohabitans 30035300 AWJ20_3295 CDS AWJ20_3295 NC_031674.1 3846818 3847921 D Enolase 3846818..3847921 Sugiyamaella lignohabitans 30035301 AWJ20_3296 CDS AWJ20_3296 NC_031674.1 3847985 3849676 R uncharacterized protein complement(3847985..3849676) Sugiyamaella lignohabitans 30035302 AWJ20_3297 CDS FBP1 NC_031674.1 3851807 3852835 D Fructose-1,6-bisphosphatase; key regulatory enzyme in the gluconeogenesis pathway, required for glucose metabolism; undergoes either proteasome-mediated or autophagy-mediated degradation depending on growth conditions; glucose starvation results in redistribution to the periplasm; interacts with Vid30p; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12686616]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 196563]; GO_component: GO:0042597 - periplasmic space [Evidence IDA] [PMID 22833678]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IMP] [PMID 2841162]; GO_function: GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IDA] [PMID 6304022]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 6321183]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0072593 - reactive oxygen species metabolic process [Evidence IMP] [PMID 16199065]; fructose 1,6-bisphosphate 1-phosphatase 3851807..3852835 Sugiyamaella lignohabitans 30035303 AWJ20_3298 CDS MCH1 NC_031674.1 3853342 3854583 D Protein with similarity to mammalian monocarboxylate permeases; monocarboxylate permeases are involved in transport of monocarboxylic acids across the plasma membrane but mutant is not deficient in monocarboxylate transport; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23708375]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 11536335]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11536335]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 11536335]; Mch1p 3853342..3854583 Sugiyamaella lignohabitans 30035304 AWJ20_3299 CDS RRP3 NC_031674.1 3854755 3856290 R Protein involved in rRNA processing; required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA; homologous to eIF-4a, which is a DEAD box RNA-dependent ATPase with helicase activity; GO_component: GO:0005730 - nucleolus [Evidence IC] [PMID 16449634]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 18975973]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16449634]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; RNA-dependent ATPase RRP3 complement(3854755..3856290) Sugiyamaella lignohabitans 30035305 AWJ20_3300 CDS SSF2 NC_031674.1 3856760 3857896 D Protein required for ribosomal large subunit maturation; functionally redundant with Ssf1p; member of the Brix family; SSF2 has a paralog, SSF1, that arose from the whole genome duplication; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence ISS] [PMID 11864607]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12702244]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IPI] [PMID 11864606]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IGI] [PMID 7748491]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 11864606]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence ISS] [PMID 11864607]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Ssf2p 3856760..3857896 Sugiyamaella lignohabitans 30035308 AWJ20_3301 CDS PIB1 NC_031674.1 3858494 3859228 D RING-type ubiquitin ligase of the endosomal and vacuolar membranes; binds phosphatidylinositol(3)-phosphate; contains a FYVE finger domain; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 11526110]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 11526110]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 9702203]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 11526110]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 11526110]; phosphatidylinositol-3-phosphate-binding ubiquitin-protein ligase 3858494..3859228 Sugiyamaella lignohabitans 30035309 AWJ20_3302 CDS AWJ20_3302 NC_031674.1 3860656 3862815 D Usp (universal stress protein) family protein, implicated in meiotic chromosome segregation 3860656..3862815 Sugiyamaella lignohabitans 30035310 AWJ20_3303 CDS PSA1 NC_031674.1 3863668 3864759 R GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase); synthesizes GDP-mannose from GTP and mannose-1-phosphate in cell wall biosynthesis; required for normal cell wall structure; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0004475 - mannose-1-phosphate guanylyltransferase activity [Evidence IEA]; GO_function: GO:0004475 - mannose-1-phosphate guanylyltransferase activity [Evidence IDA,IMP] [PMID 9195935]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IDA,IMP] [PMID 9195935]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 11055399]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 9195935]; mannose-1-phosphate guanylyltransferase complement(3863668..3864759) Sugiyamaella lignohabitans 30035311 AWJ20_3304 CDS GCD11 NC_031674.1 3868570 3870183 R Gamma subunit of the translation initiation factor eIF2; involved in the identification of the start codon; binds GTP when forming the ternary complex with GTP and tRNAi-Met; mutations in human ortholog cause X-linked intellectual disability (XLID); GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IDA] [PMID 12008673]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IDA] [PMID 17242201]; GO_component: GO:0005850 - eukaryotic translation initiation factor 2 complex [Evidence IMP] [PMID 8417348]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IMP] [PMID 8947054]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 22683627]; GO_function: GO:0000049 - tRNA binding [Evidence IMP] [PMID 8947054]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IMP] [PMID 23063529]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA] [PMID 22683627]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0045903 - positive regulation of translational fidelity [Evidence IMP] [PMID 9308967]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IMP] [PMID 23063529]; translation initiation factor eIF2 subunit gamma complement(3868570..3870183) Sugiyamaella lignohabitans 30035312 AWJ20_3305 CDS LEU3 NC_031674.1 3870580 3873195 R leucine-responsive transcriptional regulator LEU3 complement(3870580..3873195) Sugiyamaella lignohabitans 30035313 AWJ20_3306 CDS AWJ20_3306 NC_031674.1 3873697 3875067 D uncharacterized protein 3873697..3875067 Sugiyamaella lignohabitans 30035314 AWJ20_3307 CDS POP4 NC_031674.1 3877117 3877932 R Subunit of both RNase MRP and nuclear RNase P; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs; binds to the RPR1 RNA subunit in RNase P; GO_component: GO:0005655 - nucleolar ribonuclease P complex [Evidence IEA]; GO_component: GO:0005655 - nucleolar ribonuclease P complex [Evidence IDA] [PMID 9620854]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IEA]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IPI] [PMID 17881380]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IDA] [PMID 9620854]; GO_component: GO:0030677 - ribonuclease P complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 23700311]; GO_function: GO:0042134 - rRNA primary transcript binding [Evidence IDA] [PMID 17881380]; GO_function: GO:0000171 - ribonuclease MRP activity [Evidence IMP] [PMID 9085845]; GO_function: GO:0004526 - ribonuclease P activity [Evidence IMP] [PMID 9085845]; GO_function: GO:0004540 - ribonuclease activity [Evidence IEA]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0034965 - intronic box C/D snoRNA processing [Evidence IDA] [PMID 18713869]; GO_process: GO:0006379 - mRNA cleavage [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 14729943]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 9085845]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 9085845]; Pop4p complement(3877117..3877932) Sugiyamaella lignohabitans 30035315 AWJ20_3308 CDS AIM22 NC_031674.1 3878407 3879282 D Putative lipoate-protein ligase; required along with Lip2 and Lip5 for lipoylation of Lat1p and Kgd2p; similar to E. coli LplA; null mutant displays reduced frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19570983]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0016979 - lipoate-protein ligase activity [Evidence ISA] [PMID 19570983]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0009249 - protein lipoylation [Evidence IEA]; GO_process: GO:0009249 - protein lipoylation [Evidence IMP] [PMID 19570983]; putative lipoate--protein ligase 3878407..3879282 Sugiyamaella lignohabitans 30035316 AWJ20_3309 CDS EFM2 NC_031674.1 3879416 3880345 R S-adenosylmethionine-dependent methyltransferase; methylates translation elongation factors EF2 (Eft1p and Eft2p) and EF3A (Yef3p); belongs to the seven beta-strand family; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; predicted to be involved in ribosome biogenesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA] [PMID 21858014]; GO_function: GO:0016279 - protein-lysine N-methyltransferase activity [Evidence IMP] [PMID 22522802]; GO_process: GO:0018022 - peptidyl-lysine methylation [Evidence IMP] [PMID 22522802]; Efm2p complement(3879416..3880345) Sugiyamaella lignohabitans 30035317 AWJ20_3310 CDS YAT1 NC_031674.1 3880610 3882349 R Outer mitochondrial carnitine acetyltransferase; minor ethanol-inducible enzyme involved in transport of activated acyl groups from the cytoplasm into the mitochondrial matrix; phosphorylated; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 18427809]; GO_function: GO:0004092 - carnitine O-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004092 - carnitine O-acetyltransferase activity [Evidence ISS] [PMID 11329169]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0006066 - alcohol metabolic process [Evidence IGI] [PMID 11329169]; GO_process: GO:0009437 - carnitine metabolic process [Evidence IMP] [PMID 11329169]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; carnitine O-acetyltransferase YAT1 complement(3880610..3882349) Sugiyamaella lignohabitans 30035319 AWJ20_3311 CDS EHD3 NC_031674.1 3884501 3885373 R 3-hydroxyisobutyryl-CoA hydrolase; member of a family of enoyl-CoA hydratase/isomerases; non-tagged protein is detected in highly purified mitochondria in high-throughput studies; phosphorylated; mutation affects fluid-phase endocytosis; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity [Evidence IEA]; GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity [Evidence IDA,ISS] [PMID 12697341]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12697341]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006574 - valine catabolic process [Evidence IEA]; Ehd3p complement(3884501..3885373) Sugiyamaella lignohabitans 30035320 AWJ20_3312 CDS RPS5 NC_031674.1 3885976 3886644 D Protein component of the small (40S) ribosomal subunit; least basic of non-acidic ribosomal proteins; phosphorylated in vivo; essential for viability; homologous to mammalian ribosomal protein S5 and bacterial S7; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 385049]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 385049]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 6814480]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 16246728]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence ISA] [PMID 17901157]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S5 3885976..3886644 Sugiyamaella lignohabitans 30035321 AWJ20_3313 CDS ALY2 NC_031674.1 3887896 3890520 R Alpha arrestin; controls nutrient-mediated intracellular sorting of permease Gap1p; interacts with AP-1 subunit Apl4p; phosphorylated by Npr1p and also by cyclin-CDK complex Pcl7p-Pho85p; promotes endocytosis of plasma membrane proteins; ALY2 has a paralog, ALY1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005769 - early endosome [Evidence IDA] [PMID 20739461]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 20739461]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 20956561]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IPI] [PMID 18976803]; GO_process: GO:2000397 - positive regulation of ubiquitin-dependent endocytosis [Evidence IMP] [PMID 20956561]; GO_process: GO:0032386 - regulation of intracellular transport [Evidence IMP] [PMID 20739461]; GO_process: GO:0070086 - ubiquitin-dependent endocytosis [Evidence ISA] [PMID 18976803]; Aly2p complement(3887896..3890520) Sugiyamaella lignohabitans 30035322 AWJ20_3314 CDS AWJ20_3314 NC_031674.1 3892647 3893411 D uncharacterized protein 3892647..3893411 Sugiyamaella lignohabitans 30035323 AWJ20_3315 CDS MET13 NC_031674.1 3893752 3895533 R Major isozyme of methylenetetrahydrofolate reductase; catalyzes the reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate in the methionine biosynthesis pathway; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA,IEA]; GO_function: GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IDA,ISS] [PMID 10600168]; GO_function: GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence ISS] [PMID 8896269]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP,ISS] [PMID 10029993]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP,ISS] [PMID 10600168]; GO_process: GO:0006555 - methionine metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; methylenetetrahydrofolate reductase (NAD(P)H) MET13 complement(3893752..3895533) Sugiyamaella lignohabitans 30035324 AWJ20_3316 CDS AWJ20_3316 NC_031674.1 3896473 3898455 R uncharacterized protein complement(3896473..3898455) Sugiyamaella lignohabitans 30035325 AWJ20_3317 CDS AWJ20_3317 NC_031674.1 3901159 3902388 D uncharacterized protein 3901159..3902388 Sugiyamaella lignohabitans 30035326 AWJ20_3318 CDS ITC1 NC_031674.1 3904982 3908659 R Subunit of ATP-dependent Isw2p-Itc1p chromatin remodeling complex; required for repression of a-specific genes, repression of early meiotic genes during mitotic growth, and repression of INO1; similar to mammalian Acf1p, the regulatory subunit of the mammalian ATP-utilizing chromatin assembly and modifying factor (ACF) complex; ITC1 has a paralog, YPL216W, that arose from the whole genome duplication; GO_component: GO:0008623 - CHRAC [Evidence IPI] [PMID 14673157]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence TAS] [PMID 12370299]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 14673157]; GO_process: GO:0046020 - negative regulation of transcription from RNA polymerase II promoter by pheromones [Evidence IMP] [PMID 12624196]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Itc1p complement(3904982..3908659) Sugiyamaella lignohabitans 30035327 AWJ20_3319 CDS BMS1 NC_031674.1 3910614 3913898 D GTPase required for ribosomal subunit synthesis and rRNA processing; required for synthesis of 40S ribosomal subunits and for processing the 35S pre-rRNA at sites A0, A1, and A2; interacts with Rcl1p, which stimulates its GTPase and U3 snoRNA binding activities; has similarity to Tsr1p; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA,IMP] [PMID 16307926]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA,IMP] [PMID 16307926]; GO_function: GO:0034511 - U3 snoRNA binding [Evidence IDA] [PMID 16307926]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IDA] [PMID 11565749]; GO_process: GO:0042255 - ribosome assembly [Evidence IDA] [PMID 11565749]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; GTPase BMS1 3910614..3913898 Sugiyamaella lignohabitans 30035328 AWJ20_3320 CDS VPH1 NC_031674.1 3913976 3915856 R Subunit a of the vacuolar-ATPase V0 domain; one of two isoforms (Stv1p and Vph1p); Stv1p is located in V-ATPase complexes of the Golgi and endosomes while Vph1p is located in V-ATPase complexes of the vacuole; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11592965]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11948198]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 11592965]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033179 - proton-transporting V-type ATPase, V0 domain [Evidence IEA]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence IEA]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence IDA,ISS] [PMID 7514599]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IGI,ISS] [PMID 7514599]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IEP,IGI,IMP,ISS] [PMID 11278748]; GO_process: GO:0007035 - vacuolar acidification [Evidence IGI] [PMID 7514599]; H(+)-transporting V0 sector ATPase subunit a complement(3913976..3915856) Sugiyamaella lignohabitans 30035330 AWJ20_3322 CDS STB6 NC_031674.1 3918053 3920914 D Protein that binds Sin3p in a two-hybrid assay; STB6 has a paralog, STB2, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Stb6p 3918053..3920914 Sugiyamaella lignohabitans 30035332 AWJ20_3323 CDS SPT10 NC_031674.1 3920967 3923399 R Putative histone acetylase with a role in transcriptional silencing; sequence-specific activator of histone genes, binds specifically and cooperatively to pairs of UAS elements in core histone promoters, functions at or near the TATA box; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence ISS] [PMID 9175471]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 16199888]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 17078097]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 21057056]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 21057056]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 21057056]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 12192040]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17526727]; Spt10p complement(3920967..3923399) Sugiyamaella lignohabitans 30035333 AWJ20_3324 CDS NDC80 NC_031674.1 3924286 3926571 R Component of the kinetochore-associated Ndc80 complex; conserved coiled-coil protein involved in chromosome segregation, spindle checkpoint activity, and kinetochore assembly and clustering; evolutionarily conserved; other members include Ndc80p, Nuf2p, Scp24p, and Spc25p; modified by sumoylation; GO_component: GO:0031262 - Ndc80 complex [Evidence IDA,IPI] [PMID 11179222]; GO_component: GO:0031262 - Ndc80 complex [Evidence IDA] [PMID 11266451]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IMP,IPI] [PMID 11179222]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 11511347]; GO_component: GO:0000780 - condensed nuclear chromosome, centromeric region [Evidence IDA,IGI,IPI] [PMID 11266451]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI,IMP] [PMID 11266451]; GO_process: GO:0007020 - microtubule nucleation [Evidence IPI] [PMID 9153752]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0034501 - protein localization to kinetochore [Evidence IMP] [PMID 19893618]; Ndc80p complement(3924286..3926571) Sugiyamaella lignohabitans 30035334 AWJ20_3325 CDS PAN6 NC_031674.1 3927177 3928142 D Pantothenate synthase; also known as pantoate-beta-alanine ligase, required for pantothenic acid biosynthesis, deletion causes pantothenic acid auxotrophy, homologous to E. coli panC; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IEA,IEA]; GO_function: GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IDA,ISS] [PMID 10417331]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; pantoate--beta-alanine ligase PAN6 3927177..3928142 Sugiyamaella lignohabitans 30035335 AWJ20_3326 CDS PRP16 NC_031674.1 3928229 3931675 R DEAH-box RNA helicase involved in second catalytic step of splicing and in exon ligation; exhibits ATP-dependent RNA unwinding activity; mediates the release of Yju2p and Cwc25p in the second step; in the absence of ATP, stabilizes the binding of Cwc25p to the spliceosome in the first catalytic step; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IDA] [PMID 1825134]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 1825134]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID 1825134]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000378 - RNA exon ligation [Evidence IDA] [PMID 23685439]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 16103217]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 1825134]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; DEAH-box RNA helicase PRP16 complement(3928229..3931675) Sugiyamaella lignohabitans 30035336 AWJ20_3327 CDS MRPL20 NC_031674.1 3931878 3932465 D Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 54S ribosomal protein YmL20 3931878..3932465 Sugiyamaella lignohabitans 30035337 AWJ20_3328 CDS AWJ20_3328 NC_031674.1 3932624 3933298 R uncharacterized protein complement(3932624..3933298) Sugiyamaella lignohabitans 30035338 AWJ20_3329 CDS HBS1 NC_031674.1 3934513 3936177 D GTPase with similarity to translation release factors; together with binding partner Dom34p, facilitates ribosomal subunit dissociation and peptidyl-tRNA release when translation is stalled, particularly in 3' UTRs; genetically implicated in mRNA no-go decay; HBS1 has a paralog, SKI7, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 20947765]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 21623367]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 19481524]; GO_process: GO:0070966 - nuclear-transcribed mRNA catabolic process, no-go decay [Evidence IGI] [PMID 16554824]; GO_process: GO:0045727 - positive regulation of translation [Evidence IMP] [PMID 24424461]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0032790 - ribosome disassembly [Evidence IDA] [PMID 20947765]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA]; ribosome dissociation factor GTPase HBS1 3934513..3936177 Sugiyamaella lignohabitans 30035339 AWJ20_3330 CDS AWJ20_3330 NC_031674.1 3936267 3937238 R uncharacterized protein complement(3936267..3937238) Sugiyamaella lignohabitans 30035341 AWJ20_3331 CDS AWJ20_3331 NC_031674.1 3937405 3939222 D uncharacterized protein 3937405..3939222 Sugiyamaella lignohabitans 30035342 AWJ20_3332 CDS PEX19 NC_031674.1 3940846 3941886 R Chaperone and import receptor for newly-synthesized class I PMPs; binds peroxisomal membrane proteins (PMPs) in the cytoplasm and delivers them to the peroxisome for subsequent insertion into the peroxisomal membrane; interacts with Myo2p and contributes to peroxisome partitioning; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9418908]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16009135]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 9418908]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0033328 - peroxisome membrane targeting sequence binding [Evidence IPI] [PMID 16679311]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 16679311]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 9418908]; GO_process: GO:0032581 - ER-dependent peroxisome organization [Evidence IMP] [PMID 20427571]; GO_process: GO:0045033 - peroxisome inheritance [Evidence IPI] [PMID 22486971]; GO_process: GO:0007031 - peroxisome organization [Evidence IEA]; GO_process: GO:0032527 - protein exit from endoplasmic reticulum [Evidence IMP] [PMID 16009135]; GO_process: GO:0045046 - protein import into peroxisome membrane [Evidence IMP] [PMID 10637226]; GO_process: GO:0050821 - protein stabilization [Evidence IPI] [PMID 16679311]; Pex19p complement(3940846..3941886) Sugiyamaella lignohabitans 30035343 AWJ20_3333 CDS TPO2 NC_031674.1 3943652 3945385 R Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; specific for spermine; localizes to the plasma membrane; transcription of TPO2 is regulated by Haa1p; TPO2 has a paralog, TPO3, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo2p complement(3943652..3945385) Sugiyamaella lignohabitans 30035344 AWJ20_3334 CDS AWJ20_3334 NC_031674.1 3944475 3944738 D uncharacterized protein 3944475..3944738 Sugiyamaella lignohabitans 30035345 AWJ20_3335 CDS MRPS5 NC_031674.1 3947194 3948147 R Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein MRPS5 complement(3947194..3948147) Sugiyamaella lignohabitans 30035346 AWJ20_3336 CDS AWJ20_3336 NC_031674.1 3949331 3950044 R uncharacterized protein complement(3949331..3950044) Sugiyamaella lignohabitans 30035347 AWJ20_3337 CDS TFA2 NC_031674.1 3950622 3951482 R TFIIE small subunit; involved in RNA polymerase II transcription initiation; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IEA]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IDA] [PMID 1429681]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IDA] [PMID 7961670]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IPI] [PMID 9188494]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IDA] [PMID 8702741]; GO_function: GO:0001097 - TFIIH-class transcription factor binding [Evidence IDA] [PMID 8702741]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 9271406]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 1331084]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 1429681]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 7961670]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI] [PMID 9405484]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Tfa2p complement(3950622..3951482) Sugiyamaella lignohabitans 30035348 AWJ20_3338 CDS YBT1 NC_031674.1 3954789 3958928 D Transporter of the ATP-binding cassette (ABC) family; involved in bile acid transport; negative regulator of vacuole fusion; regulates release of lumenal Ca2+ stores; similar to mammalian bile transporters; YBT1 has a paralog, VMR1, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 9182565]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 9182565]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0015432 - bile acid-exporting ATPase activity [Evidence IMP] [PMID 9182565]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015721 - bile acid and bile salt transport [Evidence IMP] [PMID 9182565]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; bile acid-transporting ATPase YBT1 3954789..3958928 Sugiyamaella lignohabitans 30035349 AWJ20_3339 CDS IRR1 NC_031674.1 3959043 3962012 R Subunit of the cohesin complex; which is required for sister chromatid cohesion during mitosis and meiosis and interacts with centromeres and chromosome arms; relocalizes to the cytosol in response to hypoxia; essential for viability; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0034990 - nuclear mitotic cohesin complex [Evidence IDA] [PMID 22912589]; GO_component: GO:0034990 - nuclear mitotic cohesin complex [Evidence IDA] [PMID 9990856]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10028182]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9990856]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0000755 - cytogamy [Evidence IMP] [PMID 10028182]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 17229992]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 9990856]; GO_process: GO:0009847 - spore germination [Evidence IMP] [PMID 10028182]; Irr1p complement(3959043..3962012) Sugiyamaella lignohabitans 30035350 AWJ20_3340 CDS RNA14 NC_031674.1 3963941 3966637 R Component of the cleavage and polyadenylation factor I (CF I); CF 1, composed of the CF 1A complex (Rna14p, Rna15p, Clp1p, Pcf11p) and Hrp1, is involved in cleavage and polyadenylation of mRNA 3' ends; bridges interaction between Rna15p and Hrp1p in the CF I complex; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; required for gene looping; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 11344258]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10660071]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10660071]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 15215336]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IPI] [PMID 15215336]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA,IEA]; Rna14p complement(3963941..3966637) Sugiyamaella lignohabitans 30035352 AWJ20_3341 CDS SAM37 NC_031674.1 3966820 3967728 D SAM complex subunit SAM37 3966820..3967728 Sugiyamaella lignohabitans 30035353 AWJ20_3342 CDS AWJ20_3342 NC_031674.1 3967873 3968268 R uncharacterized protein complement(3967873..3968268) Sugiyamaella lignohabitans 30035354 AWJ20_3343 CDS AWJ20_3343 NC_031674.1 3968634 3969506 D uncharacterized protein 3968634..3969506 Sugiyamaella lignohabitans 30035355 AWJ20_3344 CDS ECM4 NC_031674.1 3969819 3971052 R Omega class glutathione transferase; not essential; similar to Ygr154cp; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16936141]; GO_function: GO:0045174 - glutathione dehydrogenase (ascorbate) activity [Evidence IEA]; GO_function: GO:0004364 - glutathione transferase activity [Evidence IEA]; GO_function: GO:0004364 - glutathione transferase activity [Evidence IDA,ISS] [PMID 16709151]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006749 - glutathione metabolic process [Evidence ISS] [PMID 16709151]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Ecm4p complement(join(3969819..3970680,3971021..3971052)) Sugiyamaella lignohabitans 30035356 AWJ20_3345 CDS IRE1 NC_031674.1 3972319 3976383 D bifunctional endoribonuclease/protein kinase IRE1 3972319..3976383 Sugiyamaella lignohabitans 30035357 AWJ20_3346 CDS AWJ20_3346 NC_031674.1 3976909 3977910 D Putative pyridoxine 4-dehydrogenase; differentially expressed during alcoholic fermentation; expression activated by transcription factor YRM1/YOR172W; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0050236 - pyridoxine:NADP 4-dehydrogenase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0042820 - vitamin B6 catabolic process [Evidence IEA]; pyridoxine 4-dehydrogenase 3976909..3977910 Sugiyamaella lignohabitans 30035358 AWJ20_3347 CDS ERD1 NC_031674.1 3979032 3980273 D Predicted membrane protein required for lumenal ER protein retention; mutants secrete the endogenous ER protein, BiP (Kar2p); GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 2178921]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 2178921]; GO_process: GO:0006621 - protein retention in ER lumen [Evidence IMP] [PMID 2178921]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Erd1p 3979032..3980273 Sugiyamaella lignohabitans 30035359 AWJ20_3348 CDS AWJ20_3348 NC_031674.1 3980463 3980969 R uncharacterized protein complement(3980463..3980969) Sugiyamaella lignohabitans 30035360 AWJ20_3349 CDS AWJ20_3349 NC_031674.1 3981572 3981781 D uncharacterized protein 3981572..3981781 Sugiyamaella lignohabitans 30035361 AWJ20_3350 CDS BCY1 NC_031674.1 3982874 3984289 D Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA); PKA is a component of a signaling pathway that controls a variety of cellular processes, including metabolism, cell cycle, stress response, stationary phase, and sporulation; GO_component: GO:0005952 - cAMP-dependent protein kinase complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11134339]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11134339]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18417610]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3288487]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2831892]; GO_function: GO:0030552 - cAMP binding [Evidence IEA]; GO_function: GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IDA] [PMID 3037314]; GO_function: GO:0004862 - cAMP-dependent protein kinase inhibitor activity [Evidence IMP] [PMID 6292221]; GO_function: GO:0008603 - cAMP-dependent protein kinase regulator activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0046580 - negative regulation of Ras protein signal transduction [Evidence IDA,IMP] [PMID 3037314]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 2981630]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 3891097]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IGI] [PMID 12782684]; GO_process: GO:0045859 - regulation of protein kinase activity [Evidence IEA]; GO_process: GO:0001932 - regulation of protein phosphorylation [Evidence IEA]; cAMP-dependent protein kinase regulatory subunit BCY1 3982874..3984289 Sugiyamaella lignohabitans 30035363 AWJ20_3351 CDS IRC5 NC_031674.1 3985047 3987563 R Putative ATPase containing the DEAD/H helicase-related sequence motif; null mutant displays increased levels of spontaneous Rad52p foci; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 10077188]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006312 - mitotic recombination [Evidence IMP] [PMID 18085829]; Irc5p complement(3985047..3987563) Sugiyamaella lignohabitans 30035364 AWJ20_3352 CDS RSC8 NC_031674.1 3988352 3990244 D Component of the RSC chromatin remodeling complex; essential for viability and mitotic growth; homolog of SWI/SNF subunit Swi3p, but unlike Swi3p, does not activate transcription of reporters; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 8980231]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 16461455]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 12183366]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 8980231]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 17542652]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA,IMP] [PMID 15870268]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 10329629]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rsc8p 3988352..3990244 Sugiyamaella lignohabitans 30035365 AWJ20_3353 CDS WSC4 NC_031674.1 3990927 3992063 R Endoplasmic reticulum (ER) membrane protein; involved in the translocation of soluble secretory proteins and insertion of membrane proteins into the ER membrane; may also have a role in the stress response but has only partial functional overlap with WSC1-3; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10196219]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP] [PMID 10196219]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 10196219]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 10196219]; GO_process: GO:0009408 - response to heat [Evidence IGI] [PMID 11589572]; Wsc4p complement(3990927..3992063) Sugiyamaella lignohabitans 30035366 AWJ20_3354 CDS YKE4 NC_031674.1 3996459 3997298 R Zinc transporter; localizes to the ER; null mutant is sensitive to calcofluor white, leads to zinc accumulation in cytosol; ortholog of the mouse KE4 and member of the ZIP (ZRT, IRT-like Protein) family; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16760462]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IMP] [PMID 16760462]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IMP] [PMID 16760462]; Zn(2+) transporter YKE4 complement(3996459..3997298) Sugiyamaella lignohabitans 30035367 AWJ20_3355 CDS AWJ20_3355 NC_031674.1 3998284 3999324 D uncharacterized protein 3998284..3999324 Sugiyamaella lignohabitans 30035368 AWJ20_3356 CDS POX1 NC_031674.1 3999360 4001438 R Fatty-acyl coenzyme A oxidase; involved in the fatty acid beta-oxidation pathway; localized to the peroxisomal matrix; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 11967269]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA,IEA]; GO_function: GO:0003995 - acyl-CoA dehydrogenase activity [Evidence IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence IEA,IEA]; GO_function: GO:0003997 - acyl-CoA oxidase activity [Evidence ISA] [PMID 2189786]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12819196]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence IEA]; GO_process: GO:0033540 - fatty acid beta-oxidation using acyl-CoA oxidase [Evidence ISA] [PMID 2189786]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA,IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; acyl-CoA oxidase complement(3999360..4001438) Sugiyamaella lignohabitans 30035369 AWJ20_3358 CDS REI1 NC_031674.1 4003379 4004800 R Cytoplasmic pre-60S factor; required for the correct recycling of shuttling factors Alb1, Arx1 and Tif6 at the end of the ribosomal large subunit biogenesis; involved in bud growth in the mitotic signaling network; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15107529]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 16648468]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 19433447]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 16648468]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 19433447]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI] [PMID 15107529]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IGI] [PMID 15107529]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IMP] [PMID 16651379]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IGI,IMP] [PMID 16648468]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 16651379]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rei1p complement(4003379..4004800) Sugiyamaella lignohabitans 30035371 AWJ20_3359 CDS TSR1 NC_031674.1 4006410 4008761 D Protein required for processing of 20S pre-rRNA in the cytoplasm; associates with pre-40S ribosomal particles; inhibits the premature association of 60S subunits with assembling 40S subunits in the cytoplasm; similar to Bms1p; relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15167894]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11565749]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15167894]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0043021 - ribonucleoprotein complex binding [Evidence IDA] [PMID 15167894]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12089522]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IMP] [PMID 11565749]; Tsr1p 4006410..4008761 Sugiyamaella lignohabitans 30035372 AWJ20_3360 CDS SSY5 NC_031674.1 4009244 4011886 D Serine protease of SPS plasma membrane amino acid sensor system; contains an inhibitory domain that dissociates in response to extracellular amino acids, freeing a catalytic domain to activate transcription factor Stp1p; other members are Ssy1p and Ptr3p; GO_component: GO:0019897 - extrinsic component of plasma membrane [Evidence IDA] [PMID 11154269]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP,ISS] [PMID 16524914]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IDA] [PMID 16778074]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 16524914]; GO_process: GO:0016485 - protein processing [Evidence IDA] [PMID 16778074]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0043200 - response to amino acid [Evidence IGI,IMP] [PMID 11154269]; Ssy5p 4009244..4011886 Sugiyamaella lignohabitans 30035374 AWJ20_3361 CDS RRP6 NC_031674.1 4011988 4014420 R exosome nuclease subunit RRP6 complement(4011988..4014420) Sugiyamaella lignohabitans 30035375 AWJ20_3362 CDS ENV7 NC_031674.1 4016191 4017507 D putative serine/threonine protein kinase ENV7 4016191..4017507 Sugiyamaella lignohabitans 30035376 AWJ20_3363 CDS AWJ20_3363 NC_031674.1 4018432 4019055 D uncharacterized protein 4018432..4019055 Sugiyamaella lignohabitans 30035377 AWJ20_3364 CDS COP1 NC_031674.1 4020126 4021988 D Alpha subunit of COPI vesicle coatomer complex; complex surrounds transport vesicles in the early secretory pathway; GO_component: GO:0030126 - COPI vesicle coat [Evidence IEA]; GO_component: GO:0030126 - COPI vesicle coat [Evidence IMP,ISS] [PMID 8001155]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 9427388]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8001155]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA,IEA]; Cop1p 4020126..4021988 Sugiyamaella lignohabitans 30035378 AWJ20_3365 CDS SUI3 NC_031674.1 4022186 4023201 R Beta subunit of the translation initiation factor eIF2; involved in the identification of the start codon; proposed to be involved in mRNA binding; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IDA] [PMID 12008673]; GO_component: GO:0005850 - eukaryotic translation initiation factor 2 complex [Evidence IDA,IMP] [PMID 12137565]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 9858542]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IMP] [PMID 12137565]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 15145951]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 22683627]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 9395514]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IDA] [PMID 12008673]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IMP] [PMID 16449648]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; translation initiation factor eIF2 subunit beta complement(join(4022186..4023007,4023073..4023201)) Sugiyamaella lignohabitans 30035379 AWJ20_3366 CDS AWJ20_3366 NC_031674.1 4024721 4024939 R Hexose transporter 2 complement(4024721..4024939) Sugiyamaella lignohabitans 30035380 AWJ20_3367 CDS AWJ20_3367 NC_031674.1 4026151 4026432 D enolase C-terminal domain-like protein 4026151..4026432 Sugiyamaella lignohabitans 30035381 AWJ20_3368 CDS AWJ20_3368 NC_031674.1 4026500 4027408 D uncharacterized protein 4026500..4027408 Sugiyamaella lignohabitans 30035382 AWJ20_3369 CDS CYB2 NC_031674.1 4027602 4028729 R Cytochrome b2 (L-lactate cytochrome-c oxidoreductase); component of the mitochondrial intermembrane space, required for lactate utilization; expression is repressed by glucose and anaerobic conditions; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 3004948]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IDA] [PMID 3004948]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006089 - lactate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cyb2p complement(4027602..4028729) Sugiyamaella lignohabitans 30035383 AWJ20_3370 CDS AWJ20_3370 NC_031674.1 4029421 4030272 D uncharacterized protein 4029421..4030272 Sugiyamaella lignohabitans 30035385 AWJ20_3371 CDS ARO80 NC_031674.1 4030466 4032688 R Zinc finger transcriptional activator of the Zn2Cys6 family; activates transcription of aromatic amino acid catabolic genes in the presence of aromatic amino acids; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23651256]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence ISS] [PMID 10207060]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IDA] [PMID 23651256]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO_process: GO:0009074 - aromatic amino acid family catabolic process [Evidence IMP] [PMID 10207060]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10207060]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA]; GO_process: GO:0006572 - tyrosine catabolic process [Evidence IEA]; Aro80p complement(4030466..4032688) Sugiyamaella lignohabitans 30035386 AWJ20_3372 CDS SPS19 NC_031674.1 4033172 4033957 D Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 4033172..4033957 Sugiyamaella lignohabitans 30035387 AWJ20_3373 CDS MIG1 NC_031674.1 4036333 4038132 D transcription factor MIG1 4036333..4038132 Sugiyamaella lignohabitans 30035388 AWJ20_3374 CDS AWJ20_3374 NC_031674.1 4038281 4039243 R Molybdenum cofactor sulfurase complement(4038281..4039243) Sugiyamaella lignohabitans 30035389 AWJ20_3376 CDS AWJ20_3376 NC_031674.1 4047839 4048327 D uncharacterized protein 4047839..4048327 Sugiyamaella lignohabitans 30035391 AWJ20_3377 CDS UBP3 NC_031674.1 4049125 4052553 R mRNA-binding ubiquitin-specific protease UBP3 complement(join(4049125..4050993,4052308..4052553)) Sugiyamaella lignohabitans 30035392 AWJ20_3378 CDS SPT16 NC_031674.1 4052760 4055282 R Subunit of the heterodimeric FACT complex (Spt16p-Pob3p); FACT associates with chromatin via interaction with Nhp6Ap and Nhp6Bp, and reorganizes nucleosomes to facilitate access to DNA by RNA and DNA polymerases; SPT16 specifically required for diauxic shift-induced H2B deposition onto rDNA genes; some mutations cause reduced nucleosome occupancy over highly transcribed regions of the yeast genome; GO_component: GO:0035101 - FACT complex [Evidence IGI,IPI] [PMID 11432837]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 10413469]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10413469]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_component: GO:0008023 - transcription elongation factor complex [Evidence IPI] [PMID 12242279]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10413469]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 18089575]; GO_function: GO:0031491 - nucleosome binding [Evidence IDA] [PMID 11432837]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0034724 - DNA replication-independent nucleosome organization [Evidence IDA] [PMID 19683499]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IPI] [PMID 9199353]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA] [PMID 12952948]; GO_process: GO:0006334 - nucleosome assembly [Evidence IDA] [PMID 15082784]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA] [PMID 15987999]; GO_process: GO:0060261 - positive regulation of transcription initiation from RNA polymerase II promoter [Evidence IGI] [PMID 15987999]; GO_process: GO:0060261 - positive regulation of transcription initiation from RNA polymerase II promoter [Evidence IMP] [PMID 19574230]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 19683500]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IPI] [PMID 12242279]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; chromatin-remodeling protein SPT16 complement(4052760..4055282) Sugiyamaella lignohabitans 30035393 AWJ20_3379 CDS YPT32 NC_031674.1 4057270 4057647 D Rab family GTPase involved in the exocytic pathway; mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi; protein abundance increases in response to DNA replication stress; YPT32 has a paralog, YPT31, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15537705]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15537705]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 9151665]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IGI] [PMID 15537705]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 9151665]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI,IMP] [PMID 9151665]; Rab family GTPase YPT32 4057270..4057647 Sugiyamaella lignohabitans 30035394 AWJ20_3380 CDS AWJ20_3380 NC_031674.1 4057996 4058571 R uncharacterized protein complement(4057996..4058571) Sugiyamaella lignohabitans 30035396 AWJ20_3381 CDS smb1 NC_031674.1 4059259 4059588 D Sm snRNP core protein Smb1 4059259..4059588 Sugiyamaella lignohabitans 30035397 AWJ20_3382 CDS AWJ20_3382 NC_031674.1 4059876 4061984 R uncharacterized protein complement(4059876..4061984) Sugiyamaella lignohabitans 30035398 AWJ20_3383 CDS TIS11 NC_031674.1 4065235 4067091 D mRNA-binding protein expressed during iron starvation; binds to a sequence element in the 3'-untranslated regions of specific mRNAs to mediate their degradation; involved in iron homeostasis; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress; TIS11 has a paralog, CTH1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21135132]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18923425]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15652485]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 15652485]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 15652485]; Tis11p 4065235..4067091 Sugiyamaella lignohabitans 30035399 AWJ20_3387 CDS GCN1 NC_031674.1 4076714 4084198 D Positive regulator of the Gcn2p kinase activity; forms a complex with Gcn20p; proposed to stimulate Gcn2p activation by an uncharged tRNA; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9234705]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IDA] [PMID 9234705]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006448 - regulation of translational elongation [Evidence IMP,IPI] [PMID 9234705]; Gcn1p 4076714..4084198 Sugiyamaella lignohabitans 30035403 AWJ20_3388 CDS SOK2 NC_031674.1 4084372 4086198 R Nuclear protein that negatively regulates pseudohyphal differentiation; plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA) signal transduction pathway; relocalizes to the cytosol in response to hypoxia; SOK2 has a paralog, PHD1, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence ISS] [PMID 8524252]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 11046133]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 8524252]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sok2p complement(4084372..4086198) Sugiyamaella lignohabitans 30035404 AWJ20_3389 CDS AWJ20_3389 NC_031674.1 4089904 4091730 D uncharacterized protein 4089904..4091730 Sugiyamaella lignohabitans 30035405 AWJ20_3390 CDS ARO2 NC_031674.1 4091936 4093069 R Bifunctional chorismate synthase and flavin reductase; catalyzes the conversion of 5-enolpyruvylshikimate 3-phosphate (EPSP) to form chorismate, which is a precursor to aromatic amino acids; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19793921]; GO_function: GO:0004107 - chorismate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004107 - chorismate synthase activity [Evidence IDA,IMP] [PMID 8971708]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0042602 - riboflavin reductase (NADPH) activity [Evidence IDA] [PMID 8971708]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IMP] [PMID 8971708]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence TAS] [PMID 1943992]; GO_process: GO:0006950 - response to stress [Evidence IEA]; bifunctional chorismate synthase/riboflavin reductase [NAD(P)H] ARO2 complement(4091936..4093069) Sugiyamaella lignohabitans 30035407 AWJ20_3391 CDS SRP102 NC_031674.1 4093453 4094316 D Signal recognition particle (SRP) receptor beta subunit; involved in SRP-dependent protein targeting; anchors the alpha subunit, Srp101p to the ER membrane; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 9679135]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005785 - signal recognition particle receptor complex [Evidence IPI] [PMID 9679135]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IPI] [PMID 7844142]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 7844142]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005047 - signal recognition particle binding [Evidence IMP,IPI,ISS] [PMID 9679135]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IC,TAS] [PMID 7844142]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 9679135]; Signal recognition particle receptor subunit beta 4093453..4094316 Sugiyamaella lignohabitans 30035408 AWJ20_3392 CDS AWJ20_3392 NC_031674.1 4094613 4095239 R uncharacterized protein complement(4094613..4095239) Sugiyamaella lignohabitans 30035409 AWJ20_3393 CDS EIS1 NC_031674.1 4098560 4102066 D Component of the eisosome required for proper eisosome assembly; similar to Uso1p; authentic, non-tagged protein is detected in a phosphorylated state in highly purified mitochondria in high-throughput studies; protein increases in abundance and relocalizes from plasma membrane to cytoplasm upon DNA replication stress; EIS1 has a paralog, YKL050C, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0032126 - eisosome [Evidence IDA] [PMID 19269952]; GO_component: GO:0032126 - eisosome [Evidence IDA,IGI] [PMID 20526336]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19064668]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070941 - eisosome assembly [Evidence IMP] [PMID 20526336]; Eis1p join(4098560..4098582,4098706..4102066) Sugiyamaella lignohabitans 30035410 AWJ20_3394 CDS SFK1 NC_031674.1 4102262 4103125 R Plasma membrane protein that may act to generate normal levels of PI4P; may act together with or upstream of Stt4p; at least partially mediates proper localization of Stt4p to the plasma membrane; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA,IMP] [PMID 12015967]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 12015967]; GO_process: GO:0048017 - inositol lipid-mediated signaling [Evidence IGI] [PMID 12015967]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0007033 - vacuole organization [Evidence IGI] [PMID 12015967]; Sfk1p complement(4102262..4103125) Sugiyamaella lignohabitans 30035411 AWJ20_3395 CDS STB4 NC_031674.1 4104474 4107092 D Putative transcription factor; contains a Zn(II)2Cys6 zinc finger domain characteristic of DNA-binding proteins; computational analysis suggests a role in regulation of expression of genes encoding transporters; binds Sin3p in a two-hybrid assay; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 15343339]; GO_component: GO:0005634 - nucleus [Evidence ISS] [PMID 9393435]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 15343339]; GO_function: GO:0003677 - DNA binding [Evidence ISS] [PMID 9393435]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Stb4p 4104474..4107092 Sugiyamaella lignohabitans 30035412 AWJ20_3396 CDS YIP4 NC_031674.1 4107259 4108029 R Protein that interacts with Rab GTPases; localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 17178117]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 11943201]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0017137 - Rab GTPase binding [Evidence IPI] [PMID 11943201]; GO_process: GO:0008150 - biological_process [Evidence ND]; Yip4p complement(4107259..4108029) Sugiyamaella lignohabitans 30035413 AWJ20_3397 CDS SAK1 NC_031674.1 4108454 4112077 R serine/threonine protein kinase SAK1 complement(4108454..4112077) Sugiyamaella lignohabitans 30035414 AWJ20_3398 CDS CTS2 NC_031674.1 4113015 4114526 D Putative chitinase; functionally complements A. gossypii cts2 mutant sporulation defect; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_function: GO:0004568 - chitinase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IGI] [PMID 18809304]; Cts2p 4113015..4114526 Sugiyamaella lignohabitans 30035415 AWJ20_3399 CDS PHO81 NC_031674.1 4120820 4123666 D Cyclin-dependent kinase (CDK) inhibitor; regulates Pho80p-Pho85p and Pcl7p-Pho85p cyclin-CDK complexes in response to phosphate levels; inhibitory activity for Pho80p-Pho85p requires myo-D-inositol heptakisphosphate (IP7) generated by Vip1p; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16611745]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0004861 - cyclin-dependent protein serine/threonine kinase inhibitor activity [Evidence IMP] [PMID 11069666]; GO_function: GO:0004861 - cyclin-dependent protein serine/threonine kinase inhibitor activity [Evidence IMP] [PMID 7939631]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006796 - phosphate-containing compound metabolic process [Evidence IMP] [PMID 4570606]; Pho81p 4120820..4123666 Sugiyamaella lignohabitans 30035416 AWJ20_3400 CDS IMP3 NC_031674.1 4123884 4124441 R Component of the SSU processome; SSU processome is required for pre-18S rRNA processing, essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034457 - Mpp10 complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0032040 - small-subunit processome [Evidence IMP] [PMID 12242301]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA,IEA]; GO_function: GO:0030515 - snoRNA binding [Evidence ISS] [PMID 10409734]; GO_function: GO:0030515 - snoRNA binding [Evidence IDA] [PMID 15489263]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence TAS] [PMID 10690410]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence TAS] [PMID 11087857]; Imp3p complement(4123884..4124441) Sugiyamaella lignohabitans 30035419 AWJ20_3401 CDS MRPL6 NC_031674.1 4124743 4125492 D Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL16 4124743..4125492 Sugiyamaella lignohabitans 30035420 AWJ20_3402 CDS COA1 NC_031674.1 4125690 4126337 R Mitochondrial inner membrane protein; required for assembly of the cytochrome c oxidase complex (complex IV); interacts with complex IV assembly factor Shy1p during the early stages of assembly; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 17882259]; GO_component: GO:0032592 - integral component of mitochondrial membrane [Evidence IDA] [PMID 17882260]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IMP,IPI] [PMID 17882259]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IMP] [PMID 17882260]; Coa1p complement(4125690..4126337) Sugiyamaella lignohabitans 30035421 AWJ20_3403 CDS MRPL9 NC_031674.1 4126538 4127431 D Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence ISS] [PMID 1597181]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence ISS] [PMID 1597181]; GO_process: GO:0002181 - cytoplasmic translation [Evidence ISS] [PMID 1597181]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL9 4126538..4127431 Sugiyamaella lignohabitans 30035422 AWJ20_3404 CDS CRM1 NC_031674.1 4127655 4130603 R Major karyopherin; involved in export of proteins, RNAs, and ribosomal subunits from the nucleus; exportin; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0000776 - kinetochore [Evidence IDA] [PMID 19139260]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9891088]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 18573877]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP] [PMID 9323132]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 9857197]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 9323132]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 9323132]; GO_process: GO:0034501 - protein localization to kinetochore [Evidence IGI] [PMID 19139260]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11313466]; GO_process: GO:0006810 - transport [Evidence IEA]; exportin CRM1 complement(4127655..4130603) Sugiyamaella lignohabitans 30035423 AWJ20_3405 CDS AWJ20_3405 NC_031674.1 4131444 4133462 R uncharacterized protein complement(4131444..4133462) Sugiyamaella lignohabitans 30035424 AWJ20_3406 CDS AWJ20_3406 NC_031674.1 4135775 4137619 D uncharacterized protein 4135775..4137619 Sugiyamaella lignohabitans 30035425 AWJ20_3407 CDS OMA1 NC_031674.1 4137825 4138901 D Metalloendopeptidase of the mitochondrial inner membrane; important for adaptive responses to various homeostatic insults and preservation of normal mitochondrial function under damage-eliciting conditions; involved in turnover of membrane-embedded proteins; mediates degradation of Cox1p in coa2 mutant cells; member of a family of predicted membrane-bound metallopeptidases in prokaryotes and higher eukaryotes; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 12963738]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IMP,ISS] [PMID 12963738]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 12963738]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Oma1p 4137825..4138901 Sugiyamaella lignohabitans 30035426 AWJ20_3408 CDS RTS2 NC_031674.1 4139093 4139905 D Basic zinc-finger protein; similar to human and mouse Kin17 proteins which are chromatin-associated proteins involved in UV response and DNA replication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Rts2p 4139093..4139905 Sugiyamaella lignohabitans 30035427 AWJ20_3409 CDS TGL4 NC_031674.1 4140873 4143464 D Multifunctional lipase/hydrolase/phospholipase; triacylglycerol lipase, steryl ester hydrolase, and Ca2+-independent phospholipase A2; catalyzes acyl-CoA dependent acylation of LPA to PA; required with Tgl3p for timely bud formation; phosphorylated and activated by Cdc28p; TGL4 has a paralog, TGL5, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 16135509]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 16267052]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24390141]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0047499 - calcium-independent phospholipase A2 activity [Evidence IDA,IMP] [PMID 20332534]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042171 - lysophosphatidic acid acyltransferase activity [Evidence IDA] [PMID 20332534]; GO_function: GO:0004771 - sterol esterase activity [Evidence IDA,IMP] [PMID 20332534]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IMP] [PMID 16135509]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IMP] [PMID 20332534]; GO_process: GO:0007114 - cell budding [Evidence IGI,IMP] [PMID 19150427]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006644 - phospholipid metabolic process [Evidence IMP] [PMID 20332534]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI,IMP] [PMID 16267052]; GO_process: GO:0006642 - triglyceride mobilization [Evidence IDA,IMP] [PMID 16135509]; Tgl4p 4140873..4143464 Sugiyamaella lignohabitans 30035428 AWJ20_3410 CDS AWJ20_3410 NC_031674.1 4145125 4146534 D uncharacterized protein join(4145125..4145183,4145287..4145293,4145563..4146534) Sugiyamaella lignohabitans 30035430 AWJ20_3411 CDS SER33 NC_031674.1 4147283 4148701 D 3-phosphoglycerate dehydrogenase; catalyzes the first step in serine and glycine biosynthesis; SER33 has a paralog, SER3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0016597 - amino acid binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0004617 - phosphoglycerate dehydrogenase activity [Evidence IEA]; GO_function: GO:0004617 - phosphoglycerate dehydrogenase activity [Evidence IMP] [PMID 12525494]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009070 - serine family amino acid biosynthetic process [Evidence IMP] [PMID 12525494]; phosphoglycerate dehydrogenase SER33 4147283..4148701 Sugiyamaella lignohabitans 30035431 AWJ20_3412 CDS RPN2 NC_031674.1 4150879 4153812 D Subunit of the 26S proteasome; substrate of the N-acetyltransferase Nat1p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15210724]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000502 - proteasome complex [Evidence IEA,IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IMP] [PMID 7565784]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IPI] [PMID 12200120]; GO_process: GO:0043248 - proteasome assembly [Evidence IGI] [PMID 17911101]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0042176 - regulation of protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP,IPI] [PMID 7565784]; proteasome regulatory particle base subunit RPN2 4150879..4153812 Sugiyamaella lignohabitans 30035432 AWJ20_3413 CDS UTP7 NC_031674.1 4153968 4155536 R Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp7p complement(4153968..4155536) Sugiyamaella lignohabitans 30035433 AWJ20_3414 CDS PXL1 NC_031674.1 4155821 4157344 R Protein that localizes to sites of polarized growth; required for selection and/or maintenance of polarized growth sites, may modulate signaling by the GTPases Cdc42p and Rho1p; contains LIM domains and has similarity to metazoan paxillin; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14767053]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15282802]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 14767053]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 15282802]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23613772]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 14767053]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 14767053]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 23613772]; GO_function: GO:0005094 - Rho GDP-dissociation inhibitor activity [Evidence IGI,IPI] [PMID 15215315]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IMP] [PMID 14767053]; GO_process: GO:0035023 - regulation of Rho protein signal transduction [Evidence IGI,IPI] [PMID 15215315]; Pxl1p complement(4155821..4157344) Sugiyamaella lignohabitans 30035434 AWJ20_3415 CDS AWJ20_3415 NC_031674.1 4159690 4161015 D uncharacterized protein 4159690..4161015 Sugiyamaella lignohabitans 30035435 AWJ20_3416 CDS TVP38 NC_031674.1 4161133 4161621 R Integral membrane protein; localized to late Golgi vesicles along with the v-SNARE Tlg2p; required for asymmetric localization of Kar9p during mitosis; GFP-fusion protein localizes to the cytoplasm in a punctate pattern; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 16107716]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IMP] [PMID 18194531]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 17178117]; Tvp38p complement(4161133..4161621) Sugiyamaella lignohabitans 30035436 AWJ20_3417 CDS SPS19 NC_031674.1 4164617 4165459 D Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 4164617..4165459 Sugiyamaella lignohabitans 30035437 AWJ20_3418 CDS AWJ20_3418 NC_031674.1 4166117 4166437 D uncharacterized protein 4166117..4166437 Sugiyamaella lignohabitans 30035438 AWJ20_3419 CDS TDH1 NC_031674.1 4167242 4168300 D Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 1; involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell wall; protein abundance increases in response to DNA replication stress; GAPDH-derived antimicrobial peptides secreted by S. cerevisiae are active against a wide variety of wine-related yeasts and bateria; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11158358]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11158358]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005739 - mitochondrion [Evidence IDA,IPI] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [Evidence IEA]; GO_function: GO:0004365 - glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity [Evidence IDA] [PMID 3905788]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEP] [PMID 3905788]; GO_process: GO:0006006 - glucose metabolic process [Evidence IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IEP] [PMID 3905788]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) TDH1 4167242..4168300 Sugiyamaella lignohabitans 30035439 AWJ20_3420 CDS AWJ20_3420 NC_031674.1 4167460 4167765 R uncharacterized protein complement(4167460..4167765) Sugiyamaella lignohabitans 30035441 AWJ20_3421 CDS AWJ20_3421 NC_031674.1 4170930 4173104 R uncharacterized protein complement(4170930..4173104) Sugiyamaella lignohabitans 30035442 AWJ20_3422 CDS AWJ20_3422 NC_031674.1 4175914 4177395 D uncharacterized protein 4175914..4177395 Sugiyamaella lignohabitans 30035443 AWJ20_3423 CDS AWJ20_3423 NC_031674.1 4178792 4181428 D uncharacterized protein 4178792..4181428 Sugiyamaella lignohabitans 30035444 AWJ20_3424 CDS AWJ20_3424 NC_031674.1 4182736 4183659 D uncharacterized protein 4182736..4183659 Sugiyamaella lignohabitans 30035445 AWJ20_3425 CDS DRN1 NC_031674.1 4184166 4185410 D Splicing factor that modulates turnover of branched RNAs by Dbr1p; interacts with spliceosomal components and branched RNA splicing products; enhances Dbr1p debranching in vitro; conserved protein with domain organization identical from yeast to human; N-terminal homology to Dbr1p N-terminus, but Dbr1p catalytic residues not conserved; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 24919400]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 24919400]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Drn1p 4184166..4185410 Sugiyamaella lignohabitans 30035446 AWJ20_3426 CDS GCN4 NC_031674.1 4186772 4187533 D amino acid starvation-responsive transcription factor GCN4 4186772..4187533 Sugiyamaella lignohabitans 30035447 AWJ20_3427 CDS FRE2 NC_031674.1 4189698 4190918 D Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low iron levels but not by low copper levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 9153234]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre2p 4189698..4190918 Sugiyamaella lignohabitans 30035448 AWJ20_3428 CDS NMD3 NC_031674.1 4190986 4192602 R Protein involved in nuclear export of the large ribosomal subunit; acts as a Crm1p-dependent adapter protein for export of nascent ribosomal subunits through the nuclear pore complex; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10022925]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 10022925]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IDA] [PMID 11105761]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IDA] [PMID 17347149]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11086007]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI] [PMID 23212245]; GO_process: GO:0006810 - transport [Evidence IEA]; ribosome-binding protein NMD3 complement(4190986..4192602) Sugiyamaella lignohabitans 30035449 AWJ20_3429 CDS CDC39 NC_031674.1 4194196 4200171 D Component of the CCR4-NOT1 core complex; this complex has multiple roles in regulating mRNA levels including regulation of transcription and destabilizing mRNAs by deadenylation; basal transcription factor; GO_component: GO:0030015 - CCR4-NOT core complex [Evidence IPI] [PMID 10490603]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11889048]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7926748]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IDA,IGI,IMP] [PMID 11889048]; GO_process: GO:0000289 - nuclear-transcribed mRNA poly(A) tail shortening [Evidence IDA] [PMID 11889048]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IDA,IPI] [PMID 21406554]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9055077]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 2680756]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 10490603]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0000749 - response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 2099190]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 11404327]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; CCR4-NOT core subunit CDC39 4194196..4200171 Sugiyamaella lignohabitans 30035450 AWJ20_3430 CDS AWJ20_3430 NC_031674.1 4201238 4204306 D uncharacterized protein 4201238..4204306 Sugiyamaella lignohabitans 30035452 AWJ20_3431 CDS AWJ20_3431 NC_031674.1 4204405 4205937 R uncharacterized protein complement(4204405..4205937) Sugiyamaella lignohabitans 30035453 AWJ20_3432 CDS GCD14 NC_031674.1 4206344 4207510 R Subunit of tRNA (1-methyladenosine) methyltransferase; required, along with Gcd10p, for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9851972]; GO_component: GO:0031515 - tRNA (m1A) methyltransferase complex [Evidence IEA]; GO_component: GO:0031515 - tRNA (m1A) methyltransferase complex [Evidence IDA,IPI] [PMID 10779558]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016429 - tRNA (adenine-N1-)-methyltransferase activity [Evidence IEA]; GO_function: GO:0016429 - tRNA (adenine-N1-)-methyltransferase activity [Evidence IDA,IMP] [PMID 10779558]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 10779558]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Gcd14p complement(4206344..4207510) Sugiyamaella lignohabitans 30035454 AWJ20_3433 CDS UTP8 NC_031674.1 4207946 4210264 D Nucleolar protein required for export of tRNAs from the nucleus; also copurifies with the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 15489292]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 19370060]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IMP] [PMID 12794079]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Utp8p 4207946..4210264 Sugiyamaella lignohabitans 30035455 AWJ20_3434 CDS AWJ20_3434 NC_031674.1 4210390 4211703 R uncharacterized protein complement(4210390..4211703) Sugiyamaella lignohabitans 30035456 AWJ20_3435 CDS EFB1 NC_031674.1 4212610 4213743 D Translation elongation factor 1 beta; stimulates nucleotide exchange to regenerate EF-1 alpha-GTP for the next elongation cycle; part of the EF-1 complex, which facilitates binding of aminoacyl-tRNA to the ribosomal A site; GO_component: GO:0005853 - eukaryotic translation elongation factor 1 complex [Evidence IEA]; GO_component: GO:0005853 - eukaryotic translation elongation factor 1 complex [Evidence IMP] [PMID 8420802]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 17925388]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA,IEA]; GO_process: GO:1990145 - maintenance of translational fidelity [Evidence IMP] [PMID 10409717]; GO_process: GO:0032232 - negative regulation of actin filament bundle assembly [Evidence IDA] [PMID 19095653]; GO_process: GO:0006449 - regulation of translational termination [Evidence IGI] [PMID 19545407]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA,IEA]; GO_process: GO:0006414 - translational elongation [Evidence IMP] [PMID 10409717]; translation elongation factor 1 subunit beta join(4212610..4212640,4212778..4212849,4213259..4213743) Sugiyamaella lignohabitans 30035457 AWJ20_3436 CDS NOP12 NC_031674.1 4213986 4215398 D Nucleolar protein involved in pre-25S rRNA processing; also involved in biogenesis of large 60S ribosomal subunit; contains an RNA recognition motif (RRM); binds to Ebp2; similar to Nop13p and Nsr1p; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11452019]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030684 - preribosome [Evidence IDA] [PMID 17922018]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 11452019]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11452019]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop12p 4213986..4215398 Sugiyamaella lignohabitans 30035458 AWJ20_3437 CDS AWJ20_3437 NC_031674.1 4216554 4217330 D spherulin-1A 4216554..4217330 Sugiyamaella lignohabitans 30035459 AWJ20_3438 CDS LAP3 NC_031674.1 4217822 4219327 D Cysteine aminopeptidase with homocysteine-thiolactonase activity; protects cells against homocysteine toxicity; has bleomycin hydrolase activity in vitro; transcription is regulated by galactose via Gal4p; orthologous to human BLMH; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19061865]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9584198]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 8063738]; GO_function: GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IDA] [PMID 8063738]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 9584198]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 9584198]; GO_process: GO:0043418 - homocysteine catabolic process [Evidence IDA,IMP] [PMID 16769724]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9374524]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0046677 - response to antibiotic [Evidence IDA] [PMID 8063738]; Lap3p 4217822..4219327 Sugiyamaella lignohabitans 30035460 AWJ20_3439 CDS AWJ20_3439 NC_031674.1 4219732 4220595 D NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein 4219732..4220595 Sugiyamaella lignohabitans 30035461 AWJ20_3440 CDS OXP1 NC_031674.1 4220682 4224455 R 5-oxoprolinase; enzyme is ATP-dependent and functions as a dimer; similar to mouse Oplah gene; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing) activity [Evidence IDA,IMP] [PMID 20402795]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006749 - glutathione metabolic process [Evidence IMP] [PMID 20349993]; Oxp1p complement(4220682..4224455) Sugiyamaella lignohabitans 30035463 AWJ20_3441 CDS AWJ20_3441 NC_031674.1 4225163 4226383 R uncharacterized protein complement(4225163..4226383) Sugiyamaella lignohabitans 30035464 AWJ20_3442 CDS RSA4 NC_031674.1 4227023 4228255 R WD-repeat protein involved in ribosome biogenesis; may interact with ribosomes; required for maturation and efficient intra-nuclear transport or pre-60S ribosomal subunits, localizes to the nucleolus; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16221974]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 16221974]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rsa4p complement(4227023..4228255) Sugiyamaella lignohabitans 30035465 AWJ20_3443 CDS CET1 NC_031674.1 4228896 4230626 D RNA 5'-triphosphatase involved in mRNA 5' capping; subunit of the mRNA capping enzyme, which is a heterotetramer composed of a Cet1p homodimer and two molecules of the guanylyltransferase Ceg1p; Cet1p also has a role in regulation of RNA pol II pausing at promoter-proximal sites; interaction between Cet1p and Ceg1p is required for Ceg1p nuclear import; mammalian enzyme is a single bifunctional polypeptide; CET1 has a paralog, CTL1, that arose from the whole genome duplication; GO_component: GO:0031533 - mRNA cap methyltransferase complex [Evidence IGI,IPI] [PMID 9710603]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004651 - polynucleotide 5'-phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004651 - polynucleotide 5'-phosphatase activity [Evidence IDA] [PMID 17707331]; GO_function: GO:0004651 - polynucleotide 5'-phosphatase activity [Evidence IDA] [PMID 9345280]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IPI] [PMID 9345280]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0098507 - polynucleotide 5' dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0098501 - polynucleotide dephosphorylation [Evidence IDA] [PMID 9345280]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 24205062]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 24172134]; Cet1p 4228896..4230626 Sugiyamaella lignohabitans 30035466 AWJ20_3444 CDS DAK2 NC_031674.1 4230778 4232595 R Dihydroxyacetone kinase; required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IDA] [PMID 12401799]; GO_function: GO:0004371 - glycerone kinase activity [Evidence ISS] [PMID 9038161]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0050354 - triokinase activity [Evidence IEA]; GO_process: GO:0019588 - anaerobic glycerol catabolic process [Evidence IEA]; GO_process: GO:0097237 - cellular response to toxic substance [Evidence IMP] [PMID 12401799]; GO_process: GO:0019563 - glycerol catabolic process [Evidence ISS] [PMID 9038161]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Dak2p complement(4230778..4232595) Sugiyamaella lignohabitans 30035467 AWJ20_3445 CDS AZF1 NC_031674.1 4235032 4237530 R Zinc-finger transcription factor; involved in diauxic shift; in the presence of glucose, activates transcription of genes involved in growth and carbon metabolism; in nonfermentable carbon sources, activates transcription of genes involved in maintenance of cell wall integrity; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16467472]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9799362]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 11839825]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA,IMP] [PMID 16467472]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IMP] [PMID 11839825]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_process: GO:0071322 - cellular response to carbohydrate stimulus [Evidence IMP] [PMID 11839825]; GO_process: GO:0071322 - cellular response to carbohydrate stimulus [Evidence IMP] [PMID 16467472]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IMP] [PMID 16467472]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA,IMP] [PMID 11839825]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Azf1p complement(4235032..4237530) Sugiyamaella lignohabitans 30035468 AWJ20_3446 CDS TUP1 NC_031674.1 4239519 4241219 R chromatin-silencing transcriptional regulator TUP1 complement(4239519..4241219) Sugiyamaella lignohabitans 30035469 AWJ20_3447 CDS AWJ20_3447 NC_031674.1 4242985 4244184 R uncharacterized protein complement(4242985..4244184) Sugiyamaella lignohabitans 30035470 AWJ20_3448 CDS MIT1 NC_031674.1 4245247 4247199 R Transcriptional regulator of pseudohyphal growth; protein with sequence similarity to S. pombe gti1+ (gluconate transport inducer 1) and C. albicans Wor1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mit1p complement(4245247..4247199) Sugiyamaella lignohabitans 30035471 AWJ20_3449 CDS EPS1 NC_031674.1 4252164 4254206 R ER protein with chaperone and co-chaperone activity; involved in retention of resident ER proteins; has a role in recognizing proteins targeted for ER-associated degradation (ERAD), member of the protein disulfide isomerase family; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10545109]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 16002399]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IMP,ISS] [PMID 11157982]; GO_function: GO:0019153 - protein-disulfide reductase (glutathione) activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16002399]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12881414]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006621 - protein retention in ER lumen [Evidence IMP] [PMID 10545109]; protein disulfide isomerase EPS1 complement(4252164..4254206) Sugiyamaella lignohabitans 30035472 AWJ20_3450 CDS DOA1 NC_031674.1 4256502 4258790 D WD repeat protein required for ubiquitin-mediated protein degradation; forms a complex with Cdc48p; plays a role in controlling cellular ubiquitin concentration; also promotes efficient NHEJ in postdiauxic/stationary phase; facilitates N-terminus-dependent proteolysis of centromeric histone H3 (Cse4p) for faithful chromosome segregation; protein increases in abundance and relocalizes from nucleus to nuclear periphery upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA,IMP] [PMID 16428438]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IMP] [PMID 12399380]; GO_process: GO:0010992 - ubiquitin homeostasis [Evidence IMP] [PMID 18508771]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 2111732]; Doa1p 4256502..4258790 Sugiyamaella lignohabitans 30035474 AWJ20_3451 CDS SGTA NC_031674.1 4259060 4259659 D Small glutamine-rich tetratricopeptide repeat-containing protein alpha 4259060..4259659 Sugiyamaella lignohabitans 30035475 AWJ20_3452 CDS AWJ20_3452 NC_031674.1 4259788 4261332 R uncharacterized protein complement(4259788..4261332) Sugiyamaella lignohabitans 30035476 AWJ20_3453 CDS SUR2 NC_031674.1 4261865 4262779 R Sphinganine C4-hydroxylase; catalyses the conversion of sphinganine to phytosphingosine in sphingolipid biosyntheis; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8868422]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000170 - sphingosine hydroxylase activity [Evidence IMP,ISS] [PMID 9556590]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IMP,ISS] [PMID 9556590]; sphingosine hydroxylase complement(4261865..4262779) Sugiyamaella lignohabitans 30035477 AWJ20_3454 CDS MHR1 NC_031674.1 4263842 4264516 D Protein involved in homologous recombination in mitochondria; required for recombination-dependent mtDNA partitioning; involved in stimulation of mitochondrial DNA replication in response to oxidative stress; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 12034822]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12034822]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 12198175]; GO_function: GO:0000150 - recombinase activity [Evidence IDA,IMP] [PMID 12198175]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 19729448]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 12198175]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 19074198]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IDA] [PMID 12034822]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 12198175]; GO_process: GO:0090297 - positive regulation of mitochondrial DNA replication [Evidence IMP] [PMID 17116696]; GO_process: GO:0090297 - positive regulation of mitochondrial DNA replication [Evidence IMP] [PMID 19074198]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IPI] [PMID 9736700]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Mhr1p 4263842..4264516 Sugiyamaella lignohabitans 30035478 AWJ20_3455 CDS STT3 NC_031674.1 4264713 4267001 R Subunit of the oligosaccharyltransferase complex of the ER lumen; complex catalyzes asparagine-linked glycosylation of newly synthesized proteins; forms a subcomplex with Ost3p and Ost4p and is directly involved in catalysis; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 10358084]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 16297388]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 9405463]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IC] [PMID 9405463]; GO_function: GO:0004576 - oligosaccharyl transferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IPI] [PMID 9405463]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3 complement(4264713..4267001) Sugiyamaella lignohabitans 30035479 AWJ20_3456 CDS AWJ20_3456 NC_031674.1 4268702 4270354 R uncharacterized protein complement(4268702..4270354) Sugiyamaella lignohabitans 30035480 AWJ20_3457 CDS AWJ20_3457 NC_031674.1 4273736 4275046 D uncharacterized protein 4273736..4275046 Sugiyamaella lignohabitans 30035481 AWJ20_3458 CDS MRP1 NC_031674.1 4275453 4276376 D Mitochondrial ribosomal protein of the small subunit; MRP1 exhibits genetic interactions with PET122, encoding a COX3-specific translational activator, and with PET123, encoding a small subunit mitochondrial ribosomal protein; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_function: GO:0004784 - superoxide dismutase activity [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006801 - superoxide metabolic process [Evidence IEA]; mitochondrial 37S ribosomal protein MRP1 4275453..4276376 Sugiyamaella lignohabitans 30035482 AWJ20_3459 CDS BRL1 NC_031674.1 4276675 4277733 R Essential nuclear envelope integral membrane protein; identified as a suppressor of a conditional mutation in the major karyopherin, CRM1; homologous to and interacts with Brr6p, a nuclear envelope protein involved in nuclear export; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15882446]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 15882446]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 15882446]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006998 - nuclear envelope organization [Evidence IEA]; GO_process: GO:0006998 - nuclear envelope organization [Evidence IMP] [PMID 15882446]; GO_process: GO:0006611 - protein export from nucleus [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 15882446]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Brl1p complement(4276675..4277733) Sugiyamaella lignohabitans 30035483 AWJ20_3460 CDS APE3 NC_031674.1 4278231 4279790 R Vacuolar aminopeptidase Y; processed to mature form by Prb1p; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 8175799]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IDA] [PMID 8175799]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IMP] [PMID 8175800]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IDA] [PMID 8175799]; Ape3p complement(4278231..4279790) Sugiyamaella lignohabitans 30035485 AWJ20_3461 CDS ETT1 NC_031674.1 4280267 4281550 R Nuclear protein that inhibits replication of Brome mosaic virus; S. cerevisiae is a model system for studying replication of positive-strand RNA viruses in their natural hosts; deletion increases stop codon readthrough; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IGI,IMP] [PMID 20630870]; Ett1p complement(4280267..4281550) Sugiyamaella lignohabitans 30035486 AWJ20_3462 CDS MET1 NC_031674.1 4282069 4283556 D S-adenosyl-L-methionine uroporphyrinogen III transmethylase; involved in the biosynthesis of siroheme, a prosthetic group used by sulfite reductase; required for sulfate assimilation and methionine biosynthesis; GO_component: GO:0005622 - intracellular [Evidence IC] [PMID 10051442]; GO_component: GO:0005622 - intracellular [Evidence IC] [PMID 9003798]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0043115 - precorrin-2 dehydrogenase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IDA] [PMID 10051442]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 1101032]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019354 - siroheme biosynthetic process [Evidence IEA]; GO_process: GO:0019354 - siroheme biosynthetic process [Evidence IGI,ISS] [PMID 9003798]; GO_process: GO:0000103 - sulfate assimilation [Evidence NAS] [PMID 9003798]; uroporphyrinogen-III C-methyltransferase 4282069..4283556 Sugiyamaella lignohabitans 30035487 AWJ20_3463 CDS AWJ20_3463 NC_031674.1 4283955 4285034 D uncharacterized protein 4283955..4285034 Sugiyamaella lignohabitans 30035488 AWJ20_3464 CDS TMC1 NC_031674.1 4285339 4287662 R AN1-type zinc finger hypothetical protein; may protect cells from trivalent metalloid induced proteotoxicity; contains a PACE promoter element, a transcriptional profile similar to CUZ1 and RPN2, and decreased expression in an RPN4 mutant; induced by nitrogen limitation and weak acid; ortholog of human AIRAP, which stimulates proteasome activity in response to arsenic; protein abundance increases in response to DNA replication stress; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0071243 - cellular response to arsenic-containing substance [Evidence IMP] [PMID 24297164]; Tmc1p complement(join(4285339..4285695,4286129..4286151,4287659..4287662)) Sugiyamaella lignohabitans 30035489 AWJ20_3465 CDS SDS24 NC_031674.1 4289001 4290455 D Protein involved in cell separation during budding; one of two S. cerevisiae homologs (Sds23p and Sds24p) of the S. pombe Sds23 protein, which is implicated in APC/cyclosome regulation; may play an indirect role in fluid-phase endocytosis; protein abundance increases in response to DNA replication stress; SDS24 has a paralog, SDS23, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000920 - cytokinetic cell separation [Evidence IGI] [PMID 16041152]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 11378903]; Sds24p 4289001..4290455 Sugiyamaella lignohabitans 30035490 AWJ20_3466 CDS JEM1 NC_031674.1 4290889 4292499 D DnaJ-like chaperone required for nuclear membrane fusion during mating; localizes to the ER membrane; exhibits genetic interactions with KAR2; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9148890]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0051087 - chaperone binding [Evidence ISS] [PMID 9148890]; GO_function: GO:0051082 - unfolded protein binding [Evidence ISS] [PMID 9148890]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11381090]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IGI,IMP] [PMID 10069807]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IGI] [PMID 9817751]; Jem1p 4290889..4292499 Sugiyamaella lignohabitans 30035491 AWJ20_3467 CDS PIB2 NC_031674.1 4295359 4297095 D hypothetical protein; contains FYVE domain; similar to Fab1 and Vps27; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Pib2p 4295359..4297095 Sugiyamaella lignohabitans 30035492 AWJ20_3468 CDS IPI1 NC_031674.1 4297360 4298058 R Component of the Rix1 complex and possibly pre-replicative complexes; required for processing of ITS2 sequences from 35S pre-rRNA; component of the pre-60S ribosomal particle with the dynein-related AAA-type ATPase Mdn1p; required for pre-replicative complex (pre-RC) formation and maintenance during DNA replication licensing; relocalizes to the cytosol in response to hypoxia; essential gene; GO_component: GO:0097344 - Rix1 complex [Evidence IDA] [PMID 14759368]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15528184]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 22421151]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 22421151]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12089522]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 14759368]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 22421151]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 15528184]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Ipi1p complement(4297360..4298058) Sugiyamaella lignohabitans 30035493 AWJ20_3469 CDS RQC1 NC_031674.1 4298807 4300642 D Component of the ribosome quality control complex (RQC); RQC (Rqc1p-Rkr1p-Tae2p-Cdc48p-Npl4p-Ufd1p) is a ribosome-bound complex required for the degradation of polypeptides arising from stalled translation; required along with Rkr1p for recruitment of the Cdc48p-Npl4p-Ufd1p AAA ATPase complex to the RQC; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 23479637]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 23479637]; Rqc1p 4298807..4300642 Sugiyamaella lignohabitans 30035494 AWJ20_3470 CDS CYS3 NC_031674.1 4301375 4302577 D Cystathionine gamma-lyase; catalyzes one of the two reactions involved in the transsulfuration pathway that yields cysteine from homocysteine with the intermediary formation of cystathionine; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0080146 - L-cysteine desulfhydrase activity [Evidence IEA]; GO_function: GO:0044540 - L-cystine L-cysteine-lyase (deaminating) [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004123 - cystathionine gamma-lyase activity [Evidence IEA]; GO_function: GO:0004123 - cystathionine gamma-lyase activity [Evidence IMP] [PMID 10509018]; GO_function: GO:0004123 - cystathionine gamma-lyase activity [Evidence IDA] [PMID 1577698]; GO_function: GO:0004123 - cystathionine gamma-lyase activity [Evidence IMP] [PMID 8366024]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IMP] [PMID 8366024]; GO_process: GO:0019343 - cysteine biosynthetic process via cystathionine [Evidence IMP] [PMID 10509018]; GO_process: GO:0019346 - transsulfuration [Evidence IMP] [PMID 8366024]; cystathionine gamma-lyase CYS3 4301375..4302577 Sugiyamaella lignohabitans 30035496 AWJ20_3471 CDS AWJ20_3471 NC_031674.1 4302835 4303587 R putative GPI anchored protein complement(4302835..4303587) Sugiyamaella lignohabitans 30035497 AWJ20_3472 CDS SIL1 NC_031674.1 4305240 4306496 R Nucleotide exchange factor for the ER lumenal Hsp70 chaperone Kar2p; required for protein translocation into the endoplasmic reticulum (ER); homolog of Yarrowia lipolytica SLS1; GrpE-like protein; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IPI] [PMID 10958688]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_function: GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IDA,IPI] [PMID 10958688]; GO_process: GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation [Evidence IGI,IMP] [PMID 10958688]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Sil1p complement(4305240..4306496) Sugiyamaella lignohabitans 30035498 AWJ20_3473 CDS OPI10 NC_031674.1 4307538 4307984 R Protein with a possible role in phospholipid biosynthesis; null mutant displays an inositol-excreting phenotype that is suppressed by exogenous choline; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006020 - inositol metabolic process [Evidence IMP] [PMID 16582425]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; Opi10p complement(4307538..4307984) Sugiyamaella lignohabitans 30035499 AWJ20_3474 CDS ERP3 NC_031674.1 4308760 4309383 D Protein with similarity to Emp24p and Erv25p; member of the p24 family involved in ER to Golgi transport; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 10359606]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence ISA] [PMID 10359606]; Erp3p 4308760..4309383 Sugiyamaella lignohabitans 30035500 AWJ20_3475 CDS SWI3 NC_031674.1 4309538 4312180 R Subunit of the SWI/SNF chromatin remodeling complex; SWI/SNF regulates transcription by remodeling chromosomes; contains SANT domain that is required for SWI/SNF assembly; is essential for displacement of histone H2A-H2B dimers during ATP-dependent remodeling; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2; relocates to the cytosol under hypoxic conditions; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8016655]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA,IMP] [PMID 8159677]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 1339306]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA,IMP] [PMID 16461455]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0042393 - histone binding [Evidence IPI] [PMID 17496903]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 8016655]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8221926]; GO_process: GO:0044109 - cellular alcohol catabolic process [Evidence IMP] [PMID 1339306]; GO_process: GO:0031496 - positive regulation of mating type switching [Evidence IMP] [PMID 6436497]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 1339306]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3542227]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0005987 - sucrose catabolic process [Evidence IMP] [PMID 1339306]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Swi3p complement(4309538..4312180) Sugiyamaella lignohabitans 30035501 AWJ20_3476 CDS AWJ20_3476 NC_031674.1 4315434 4315853 D uncharacterized protein 4315434..4315853 Sugiyamaella lignohabitans 30035502 AWJ20_3477 CDS NNK1 NC_031674.1 4316056 4318830 R protein kinase NNK1 complement(4316056..4318830) Sugiyamaella lignohabitans 30035503 AWJ20_3478 CDS BUD14 NC_031674.1 4321972 4325091 D protein phosphatase regulator BUD14 4321972..4325091 Sugiyamaella lignohabitans 30035504 AWJ20_3479 CDS KAP104 NC_031674.1 4325981 4328752 D Transportin or cytosolic karyopherin beta 2; functions in the rg-nuclear localization signal-mediated nuclear import/reimport of mRNA-binding proteins Nab2p and Hrp1p; regulates asymmetric protein synthesis in daughter cells during mitosis; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 19198597]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 19198597]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8849456]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_function: GO:0008139 - nuclear localization sequence binding [Evidence IPI] [PMID 9488461]; GO_process: GO:0010458 - exit from mitosis [Evidence IMP] [PMID 12524331]; GO_process: GO:0006609 - mRNA-binding (hnRNP) protein import into nucleus [Evidence IMP,IPI] [PMID 8849456]; GO_process: GO:0006609 - mRNA-binding (hnRNP) protein import into nucleus [Evidence IDA] [PMID 9488461]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,IPI] [PMID 8849456]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042991 - transcription factor import into nucleus [Evidence IMP,IPI] [PMID 19366694]; GO_process: GO:0006810 - transport [Evidence IEA]; Kap104p 4325981..4328752 Sugiyamaella lignohabitans 30035505 AWJ20_3480 CDS RPL9B NC_031674.1 4331081 4331650 R Ribosomal 60S subunit protein L9B; homologous to mammalian ribosomal protein L9 and bacterial L6; RPL9B has a paralog, RPL9A, that arose from a single-locus duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L9B complement(4331081..4331650) Sugiyamaella lignohabitans 30035507 AWJ20_3481 CDS PMT2 NC_031674.1 4333083 4335317 D Protein O-mannosyltransferase of the ER membrane; transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; involved in ER quality control; acts in a complex with Pmt1p, can instead interact with Pmt5p; antifungal drug target; PMT2 has a paralog, PMT3, that arose from the whole genome duplication; GO_component: GO:0097582 - dolichyl-phosphate-mannose-protein mannosyltransferase Pmt1p-Pmt2p dimer complex [Evidence IDA] [PMID 12551906]; GO_component: GO:0097582 - dolichyl-phosphate-mannose-protein mannosyltransferase Pmt1p-Pmt2p dimer complex [Evidence IPI] [PMID 21956107]; GO_component: GO:0097582 - dolichyl-phosphate-mannose-protein mannosyltransferase Pmt1p-Pmt2p dimer complex [Evidence IPI] [PMID 8543034]; GO_component: GO:0097584 - dolichyl-phosphate-mannose-protein mannosyltransferase Pmt5p-Pmt2p dimer complex [Evidence IDA] [PMID 12551906]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IEA]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IDA,IGI] [PMID 21956107]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IGI,IMP,ISA] [PMID 7852348]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IGI,IMP] [PMID 8543034]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 18182384]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IGI] [PMID 21147851]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IEA]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IMP] [PMID 9184828]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IMP] [PMID 18182384]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IGI] [PMID 21231968]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IGI,IMP] [PMID 7852348]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IGI,IMP] [PMID 8543034]; GO_process: GO:0032527 - protein exit from endoplasmic reticulum [Evidence IGI] [PMID 21147851]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:1900101 - regulation of endoplasmic reticulum unfolded protein response [Evidence IGI] [PMID 21231968]; GO_process: GO:1900101 - regulation of endoplasmic reticulum unfolded protein response [Evidence IGI,IMP] [PMID 23704572]; dolichyl-phosphate-mannose-protein mannosyltransferase PMT2 4333083..4335317 Sugiyamaella lignohabitans 30035508 AWJ20_3482 CDS AWJ20_3482 NC_031674.1 4335459 4337474 R uncharacterized protein complement(4335459..4337474) Sugiyamaella lignohabitans 30035509 AWJ20_3483 CDS ELP2 NC_031674.1 4337968 4340217 R Subunit of Elongator complex; Elongator is required for modification of wobble nucleosides in tRNA; target of Kluyveromyces lactis zymocin; GO_component: GO:0033588 - Elongator holoenzyme complex [Evidence IDA] [PMID 11689709]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12139626]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12139626]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0032447 - protein urmylation [Evidence IMP] [PMID 14551258]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11689709]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Elongator subunit ELP2 complement(4337968..4340217) Sugiyamaella lignohabitans 30035510 AWJ20_3484 CDS ILV3 NC_031674.1 4340495 4342285 R Dihydroxyacid dehydratase; catalyzes third step in the common pathway leading to biosynthesis of branched-chain amino acids; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IMP] [PMID 14124940]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IMP] [PMID 14124940]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]; dihydroxy-acid dehydratase ILV3 complement(4340495..4342285) Sugiyamaella lignohabitans 30035511 AWJ20_3485 CDS AWJ20_3485 NC_031674.1 4340640 4341221 D uncharacterized protein 4340640..4341221 Sugiyamaella lignohabitans 30035512 AWJ20_3486 CDS SYM1 NC_031674.1 4343326 4343952 R Protein required for ethanol metabolism; induced by heat shock and localized to the inner mitochondrial membrane; homologous to mammalian peroxisomal membrane protein Mpv17; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 15189984]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 23045398]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006067 - ethanol metabolic process [Evidence IMP] [PMID 15189984]; Sym1p complement(4343326..4343952) Sugiyamaella lignohabitans 30035513 AWJ20_3487 CDS PIL1 NC_031674.1 4347090 4348013 D lipid-binding protein PIL1 4347090..4348013 Sugiyamaella lignohabitans 30035514 AWJ20_3488 CDS HAT1 NC_031674.1 4348932 4350227 R Catalytic subunit of the Hat1p-Hat2p histone acetyltransferase complex; uses the cofactor acetyl coenzyme A to acetylate free nuclear and cytoplasmic histone H4; involved in telomeric silencing and DNA double-strand break repair; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8858151]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9575221]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IEA]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IPI] [PMID 14761951]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA,IPI] [PMID 8858151]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA] [PMID 9575221]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14761951]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9575221]; GO_function: GO:0010485 - H4 histone acetyltransferase activity [Evidence IDA] [PMID 8858151]; GO_function: GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16612003]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 7559580]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 8858151]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 9575221]; GO_function: GO:0042393 - histone binding [Evidence IEA]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 8858151]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA,IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 10982821]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 15099519]; GO_process: GO:0016573 - histone acetylation [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 7559580]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 8858151]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 9575221]; Hat1p complement(4348932..4350227) Sugiyamaella lignohabitans 30035515 AWJ20_3489 CDS AWJ20_3489 NC_031674.1 4350993 4355345 R uncharacterized protein complement(4350993..4355345) Sugiyamaella lignohabitans 30035516 AWJ20_3490 CDS DOC1 NC_031674.1 4356996 4359699 D Processivity factor; required for the ubiquitination activity of the anaphase promoting complex (APC), mediates the activity of the APC by contributing to substrate recognition; involved in cyclin proteolysis; contains a conserved DOC1 homology domain; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IDA] [PMID 12402045]; GO_function: GO:0090302 - mitotic anaphase-promoting complex activity [Evidence IDA] [PMID 12402045]; GO_process: GO:0007092 - activation of mitotic anaphase-promoting complex activity [Evidence IDA,IMP] [PMID 12402045]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA,IMP] [PMID 12402045]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0031497 - chromatin assembly [Evidence IGI] [PMID 12399376]; GO_process: GO:0008054 - cyclin catabolic process [Evidence IMP] [PMID 9348530]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; anaphase promoting complex subunit DOC1 join(4356996..4357681,4358616..4359699) Sugiyamaella lignohabitans 30035518 AWJ20_3491 CDS KTR1 NC_031674.1 4364136 4365350 D Alpha-1,2-mannosyltransferase; involved in O- and N-linked protein glycosylation; type II membrane protein; member of the KRE2/MNT1 mannosyltransferase family; relocalizes from vacuole to cytoplasm upon DNA replication stress; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8631921]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IDA] [PMID 9020857]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IMP] [PMID 9182588]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IGI] [PMID 9182588]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IGI] [PMID 9182588]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; alpha-1,2-mannosyltransferase KTR1 4364136..4365350 Sugiyamaella lignohabitans 30035519 AWJ20_3492 CDS AWJ20_3492 NC_031674.1 4366317 4367039 R uncharacterized protein complement(4366317..4367039) Sugiyamaella lignohabitans 30035520 AWJ20_3493 CDS AWJ20_3493 NC_031674.1 4367249 4368664 R uncharacterized protein complement(4367249..4368664) Sugiyamaella lignohabitans 30035521 AWJ20_3494 CDS AWJ20_3494 NC_031674.1 4368931 4369710 R Glyoxylate reductase; acts on glyoxylate and hydroxypyruvate substrates; YPL113C is not an essential gene; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IMP] [PMID 17173333]; GO_process: GO:0008152 - metabolic process [Evidence IMP] [PMID 17173333]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glyoxylate reductase complement(4368931..4369710) Sugiyamaella lignohabitans 30035522 AWJ20_3495 CDS ARG1 NC_031674.1 4370939 4372180 D Arginosuccinate synthetase; catalyzes the formation of L-argininosuccinate from citrulline and L-aspartate in the arginine biosynthesis pathway; potential Cdc28p substrate; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004055 - argininosuccinate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004055 - argininosuccinate synthase activity [Evidence IDA] [PMID 2897249]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEP,IMP] [PMID 2897249]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; argininosuccinate synthase 4370939..4372180 Sugiyamaella lignohabitans 30035523 AWJ20_3496 CDS SSP120 NC_031674.1 4372414 4373055 D hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Ssp120p 4372414..4373055 Sugiyamaella lignohabitans 30035524 AWJ20_3497 CDS SPC105 NC_031674.1 4373230 4376118 R Subunit of a kinetochore-microtubule binding complex; complex bridges centromeric heterochromatin and kinetochore MAPs and motors; required for sister chromatid bi-orientation and kinetochore binding of SAC components; complex also includes Kre28p; modified by sumoylation; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 19893618]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_function: GO:0008017 - microtubule binding [Evidence IDA] [PMID 19893618]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9585415]; GO_process: GO:0007020 - microtubule nucleation [Evidence IPI] [PMID 9153752]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IMP] [PMID 19893618]; GO_process: GO:0034501 - protein localization to kinetochore [Evidence IMP] [PMID 19893618]; GO_process: GO:0031134 - sister chromatid biorientation [Evidence IMP] [PMID 19893618]; Spc105p complement(4373230..4376118) Sugiyamaella lignohabitans 30035525 AWJ20_3498 CDS FRE2 NC_031674.1 4376989 4379232 R Ferric reductase and cupric reductase; reduces siderophore-bound iron and oxidized copper prior to uptake by transporters; expression induced by low iron levels but not by low copper levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8164662]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 8164662]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 9153234]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IDA] [PMID 8164662]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre2p complement(4376989..4379232) Sugiyamaella lignohabitans 30035526 AWJ20_3499 CDS SUR1 NC_031674.1 4383385 4384404 D Mannosylinositol phosphorylceramide (MIPC) synthase catalytic subunit; forms a complex with regulatory subunit Csg2p; function in sphingolipid biosynthesis is overlapping with that of Csh1p; SUR1 has a paralog, CSH1, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005622 - intracellular [Evidence IC] [PMID 10931938]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IGI,IMP] [PMID 12954640]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence ISS] [PMID 9653120]; GO_process: GO:0006688 - glycosphingolipid biosynthetic process [Evidence IMP,ISS] [PMID 9323360]; GO_process: GO:0006675 - mannosyl-inositol phosphorylceramide metabolic process [Evidence IMP] [PMID 9323360]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence TAS] [PMID 10366774]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence IMP] [PMID 12954640]; mannosylinositol phosphorylceramide synthase catalytic subunit SUR1 4383385..4384404 Sugiyamaella lignohabitans 30035527 AWJ20_3500 CDS MES1 NC_031674.1 4384734 4387070 D Methionyl-tRNA synthetase; forms a complex with glutamyl-tRNA synthetase (Gus1p) and Arc1p, which increases the catalytic efficiency of both tRNA synthetases; also has a role in nuclear export of tRNAs; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 3905796]; GO_component: GO:0017102 - methionyl glutamyl tRNA synthetase complex [Evidence IDA] [PMID 11069915]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004825 - methionine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004825 - methionine-tRNA ligase activity [Evidence IDA] [PMID 3312199]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006431 - methionyl-tRNA aminoacylation [Evidence IDA] [PMID 3312199]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; methionine--tRNA ligase MES1 4384734..4387070 Sugiyamaella lignohabitans 30035530 AWJ20_3501 CDS CEF1 NC_031674.1 4387214 4389370 R Essential splicing factor; associated with Prp19p and the spliceosome, contains an N-terminal c-Myb DNA binding motif necessary for cell viability but not for Prp19p association, evolutionarily conserved and homologous to S. pombe Cdc5p; GO_component: GO:0000974 - Prp19 complex [Evidence IDA] [PMID 10092627]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 10092627]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 10092627]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID 22408182]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 22408182]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 10092627]; Cef1p complement(4387214..4389370) Sugiyamaella lignohabitans 30035531 AWJ20_3502 CDS HRK1 NC_031674.1 4390880 4393507 D putative serine/threonine protein kinase HRK1 4390880..4393507 Sugiyamaella lignohabitans 30035532 AWJ20_3503 CDS PRS5 NC_031674.1 4393676 4394962 R 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase; synthesizes PRPP, which is required for nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA,IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IGI] [PMID 15280369]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IMP] [PMID 10212224]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IGI] [PMID 15280369]; GO_process: GO:0044249 - cellular biosynthetic process [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IPI] [PMID 15470112]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009156 - ribonucleoside monophosphate biosynthetic process [Evidence IEA]; ribose phosphate diphosphokinase subunit PRS5 complement(4393676..4394962) Sugiyamaella lignohabitans 30035533 AWJ20_3504 CDS AWJ20_3504 NC_031674.1 4398735 4400138 R uncharacterized protein complement(4398735..4400138) Sugiyamaella lignohabitans 30035534 AWJ20_3505 CDS ATP16 NC_031674.1 4406911 4407216 R Delta subunit of the central stalk of mitochondrial F1F0 ATP synthase; F1F0 ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; F1 translationally regulates ATP6 and ATP8 expression to achieve a balanced output of ATP synthase genes encoded in nucleus and mitochondria; phosphorylated; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005756 - mitochondrial proton-transporting ATP synthase, central stalk [Evidence IDA] [PMID 17082766]; GO_component: GO:0005756 - mitochondrial proton-transporting ATP synthase, central stalk [Evidence IMP,IPI,ISS] [PMID 8026496]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA,IEA]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IDA] [PMID 15294286]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 15294286]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 18722382]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IMP,ISS] [PMID 8026496]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,IPI,ISS] [PMID 8026496]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit delta complement(4406911..4407216) Sugiyamaella lignohabitans 30035535 AWJ20_3506 CDS PTC1 NC_031674.1 4409196 4410800 R Type 2C protein phosphatase (PP2C); dephosphorylates Hog1p, inactivating osmosensing MAPK cascade; involved in Fus3p activation during pheromone response; deletion affects precursor tRNA splicing, mitochondrial inheritance, and sporulation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11113180]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11113180]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 10580002]; GO_process: GO:0000173 - inactivation of MAPK activity involved in osmosensory signaling pathway [Evidence IDA,IGI,IMP] [PMID 11113180]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IMP] [PMID 9529388]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 20400943]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 10580002]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 11113180]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IMP] [PMID 8196609]; type 2C protein phosphatase PTC1 complement(4409196..4410800) Sugiyamaella lignohabitans 30035536 AWJ20_3507 CDS AWJ20_3507 NC_031674.1 4412616 4413314 D uncharacterized protein 4412616..4413314 Sugiyamaella lignohabitans 30035537 AWJ20_3508 CDS RPT2 NC_031674.1 4413498 4414628 R ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; required for normal peptide hydrolysis by the core 20S particle; N-myristoylation of Rpt2p at Gly2 is involved in regulating the proper intracellular distribution of proteasome activity by controlling the nuclear localization of the 26S proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15210724]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 7721833]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0036402 - proteasome-activating ATPase activity [Evidence IGI,IMP] [PMID 11430818]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:0043171 - peptide catabolic process [Evidence IMP] [PMID 9724628]; GO_process: GO:0045732 - positive regulation of protein catabolic process [Evidence IDA] [PMID 15135049]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0031503 - protein complex localization [Evidence IMP] [PMID 23102099]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 9724628]; proteasome regulatory particle base subunit RPT2 complement(4413498..4414628) Sugiyamaella lignohabitans 30035538 AWJ20_3509 CDS UBC1 NC_031674.1 4416222 4416497 R Ubiquitin-conjugating enzyme; key E2 partner with Ubc4p for the anaphase-promoting complex (APC); mediates selective degradation of short-lived and abnormal proteins; plays a role in vesicle biogenesis and ER-associated protein degradation (ERAD); component of the cellular stress response; protein abundance increases in response to DNA replication stress key E2 partner with Ubc4p for the anaphase-promoting complex (APC); GO_component: GO:0000502 - proteasome complex [Evidence IPI] [PMID 10848595]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,ISS] [PMID 2265617]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 10878801]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11134048]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 2265617]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0016050 - vesicle organization [Evidence IMP] [PMID 11134048]; E2 ubiquitin-conjugating protein UBC1 complement(4416222..4416497) Sugiyamaella lignohabitans 30035539 AWJ20_3510 CDS PDH1 NC_031674.1 4416793 4418256 R Mitochondrial protein that participates in respiration; induced by diauxic shift; homologous to E. coli PrpD, may take part in the conversion of 2-methylcitrate to 2-methylisocitrate; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0047547 - 2-methylcitrate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0047547 - 2-methylcitrate dehydratase activity [Evidence ISA] [PMID 9006051]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0019543 - propionate catabolic process [Evidence IEA]; GO_process: GO:0019629 - propionate catabolic process, 2-methylcitrate cycle [Evidence IEA]; GO_process: GO:0019629 - propionate catabolic process, 2-methylcitrate cycle [Evidence ISA] [PMID 9006051]; GO_process: GO:0019541 - propionate metabolic process [Evidence IMP] [PMID 11179416]; Pdh1p complement(4416793..4418256) Sugiyamaella lignohabitans 30035541 AWJ20_3511 CDS GCY1 NC_031674.1 4422009 4423004 D Glycerol dehydrogenase; involved in an alternative pathway for glycerol catabolism used under microaerobic conditions; also has mRNA binding activity; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GCY1 has a paralog, YPR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 10818358]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0047953 - glycerol 2-dehydrogenase (NADP+) activity [Evidence IEA]; GO_function: GO:1990042 - glycerol dehydrogenase [NAD(P)+] activity [Evidence IMP] [PMID 22979944]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IDA] [PMID 17962934]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glycerol 2-dehydrogenase (NADP(+)) GCY1 4422009..4423004 Sugiyamaella lignohabitans 30035542 AWJ20_3512 CDS GRR1 NC_031674.1 4423240 4425150 R F-box protein component of an SCF ubiquitin-ligase complex; modular substrate specificity factor which associates with core SCF (Cdc53p, Skp1p and Hrt1p/Rbx1p) to form the SCF(Grr1) complex; SCF(Grr1) acts as a ubiquitin-protein ligase directing ubiquitination of substrates such as: Gic2p, Mks1p, Mth1p, Cln1p, Cln2p and Cln3p; involved in carbon catabolite repression, glucose-dependent divalent cation transport, glucose transport, morphogenesis, and sulfite detoxification; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IMP] [PMID 9736614]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 11080155]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 15775961]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11080155]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11080155]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 11259599]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 9346238]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA,IMP] [PMID 9819356]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 10213692]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence TAS] [PMID 9346231]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 10213692]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0000751 - cell cycle arrest in response to pheromone [Evidence IMP] [PMID 15942932]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12482937]; GO_process: GO:0071406 - cellular response to methylmercury [Evidence IMP] [PMID 17141224]; GO_process: GO:0006006 - glucose metabolic process [Evidence IEA]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IMP] [PMID 16093347]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IGI,IPI] [PMID 9499404]; SCF ubiquitin ligase complex subunit GRR1 complement(4423240..4425150) Sugiyamaella lignohabitans 30035543 AWJ20_3513 CDS AWJ20_3513 NC_031674.1 4427940 4429034 D uncharacterized protein 4427940..4429034 Sugiyamaella lignohabitans 30035544 AWJ20_3514 CDS PBY1 NC_031674.1 4429250 4430491 R Putative tubulin tyrosine ligase associated with P-bodies; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 17307817]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0004835 - tubulin-tyrosine ligase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 17307817]; Pby1p complement(4429250..4430491) Sugiyamaella lignohabitans 30035545 AWJ20_3515 CDS PBY1 NC_031674.1 4430700 4431503 R Putative tubulin tyrosine ligase associated with P-bodies; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 17307817]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0004835 - tubulin-tyrosine ligase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 17307817]; Pby1p complement(4430700..4431503) Sugiyamaella lignohabitans 30035546 AWJ20_3516 CDS OPT1 NC_031674.1 4432279 4433031 R Proton-coupled oligopeptide transporter of the plasma membrane; also transports glutathione and phytochelatin; member of the OPT family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IMP,ISS] [PMID 10788431]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 19496824]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IMP] [PMID 10652283]; GO_function: GO:0005427 - proton-dependent oligopeptide secondary active transmembrane transporter activity [Evidence IDA] [PMID 16149917]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA] [PMID 16149917]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence IEP] [PMID 11862495]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; oligopeptide transporter OPT1 complement(4432279..4433031) Sugiyamaella lignohabitans 30035547 AWJ20_3517 CDS ERG25 NC_031674.1 4437224 4438108 D C-4 methyl sterol oxidase; catalyzes the first of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; mutants accumulate the sterol intermediate 4,4-dimethylzymosterol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8663358]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8663358]; GO_function: GO:0000254 - C-4 methylsterol oxidase activity [Evidence IEA]; GO_function: GO:0000254 - C-4 methylsterol oxidase activity [Evidence IDA] [PMID 8663358]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 8663358]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; methylsterol monooxygenase 4437224..4438108 Sugiyamaella lignohabitans 30035548 AWJ20_3518 CDS AWJ20_3518 NC_031674.1 4438227 4439987 R uncharacterized protein complement(4438227..4439987) Sugiyamaella lignohabitans 30035549 AWJ20_3519 CDS CDC23 NC_031674.1 4440569 4442047 D Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); APC/C is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IEA]; GO_component: GO:0005680 - anaphase-promoting complex [Evidence IDA] [PMID 9469814]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0030332 - cyclin binding [Evidence IPI] [PMID 12413490]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16481473]; GO_process: GO:0031145 - anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 8895471]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA,IMP] [PMID 16481473]; GO_process: GO:0030071 - regulation of mitotic metaphase/anaphase transition [Evidence IEA]; anaphase promoting complex subunit CDC23 4440569..4442047 Sugiyamaella lignohabitans 30035550 AWJ20_3520 CDS HCS1 NC_031674.1 4442260 4444344 R Hexameric DNA polymerase alpha-associated DNA helicase A; involved in lagging strand DNA synthesis; contains single-stranded DNA stimulated ATPase and dATPase activities; replication protein A stimulates helicase and ATPase activities; GO_component: GO:0033203 - DNA helicase A complex [Evidence IDA] [PMID 9341218]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 8257676]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IDA] [PMID 8257676]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IDA] [PMID 9341218]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006273 - lagging strand elongation [Evidence IC] [PMID 8257676]; ATP-dependent 5'-3' DNA helicase HCS1 complement(4442260..4444344) Sugiyamaella lignohabitans 30035552 AWJ20_3521 CDS PRP45 NC_031674.1 4444588 4446216 D mRNA splicing protein PRP45 4444588..4446216 Sugiyamaella lignohabitans 30035553 AWJ20_3522 CDS POP5 NC_031674.1 4446307 4446816 R RNA-binding protein POP5 complement(4446307..4446816) Sugiyamaella lignohabitans 30035554 AWJ20_3523 CDS TGS1 NC_031674.1 4446976 4447662 D Trimethyl guanosine synthase, conserved nucleolar methyl transferase; converts the m(7)G cap structure of snRNAs, snoRNAs, and telomerase TLC1 RNA to m(2,2,7)G; also required for nucleolar assembly and splicing of meiotic pre-mRNAs; interacts with Swm2p, which may confer substrate specificity on Tgs1p; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11983179]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008173 - RNA methyltransferase activity [Evidence IMP,ISS] [PMID 11983179]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009452 - 7-methylguanosine RNA capping [Evidence IEA]; GO_process: GO:0036261 - 7-methylguanosine cap hypermethylation [Evidence IMP] [PMID 11983179]; GO_process: GO:0001510 - RNA methylation [Evidence IEA]; GO_process: GO:0001510 - RNA methylation [Evidence IMP] [PMID 11983179]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 21398639]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0017126 - nucleologenesis [Evidence IMP] [PMID 15340060]; GO_process: GO:0032210 - regulation of telomere maintenance via telomerase [Evidence IMP] [PMID 18273059]; GO_process: GO:0032210 - regulation of telomere maintenance via telomerase [Evidence IMP] [PMID 18840651]; Tgs1p 4446976..4447662 Sugiyamaella lignohabitans 30035555 AWJ20_3524 CDS ALA1 NC_031674.1 4447819 4450563 R Cytoplasmic and mitochondrial alanyl-tRNA synthetase; required for protein synthesis; point mutation (cdc64-1 allele) causes cell cycle arrest at G1; lethality of null mutation is functionally complemented by human homolog; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16556230]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16556230]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004813 - alanine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004813 - alanine-tRNA ligase activity [Evidence IGI,ISS] [PMID 7761427]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_process: GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006419 - alanyl-tRNA aminoacylation [Evidence IGI,IMP] [PMID 7761427]; GO_process: GO:0070143 - mitochondrial alanyl-tRNA aminoacylation [Evidence IC] [PMID 16556230]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; alanine--tRNA ligase complement(4447819..4450563) Sugiyamaella lignohabitans 30035556 AWJ20_3525 CDS ATP2 NC_031674.1 4451403 4452650 R Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase; which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; F1 translationally regulates ATP6 and ATP8 expression to achieve a balanced output of ATP synthase genes encoded in nucleus and mitochondria; phosphorylated; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005754 - mitochondrial proton-transporting ATP synthase, catalytic core [Evidence IDA] [PMID 17082766]; GO_component: GO:0005754 - mitochondrial proton-transporting ATP synthase, catalytic core [Evidence IMP] [PMID 6225776]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IDA] [PMID 15294286]; GO_component: GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 15294286]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 18722382]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IMP,ISS] [PMID 6225776]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IMP] [PMID 2529856]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0046034 - ATP metabolic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP] [PMID 2529856]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,ISS] [PMID 6225776]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit beta complement(4451403..4452650) Sugiyamaella lignohabitans 30035557 AWJ20_3526 CDS AWJ20_3526 NC_031674.1 4454626 4457226 D transcription factor, putative 4454626..4457226 Sugiyamaella lignohabitans 30035558 AWJ20_3527 CDS IQG1 NC_031674.1 4457329 4461366 R Essential protein required for determination of budding pattern; promotes localization of axial markers Bud4p and Cdc12p and functionally interacts with Sec3p, localizes to the contractile ring during anaphase, member of the IQGAP family; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence TAS] [PMID 10652251]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005099 - Ras GTPase activator activity [Evidence IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0008092 - cytoskeletal protein binding [Evidence IPI] [PMID 9950677]; GO_process: GO:0007015 - actin filament organization [Evidence IPI] [PMID 9950677]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000920 - cytokinetic cell separation [Evidence IMP] [PMID 9442111]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032320 - positive regulation of Ras GTPase activity [Evidence IEA]; GO_process: GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence TAS] [PMID 10652251]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Iqg1p complement(4457329..4461366) Sugiyamaella lignohabitans 30035559 AWJ20_3528 CDS AWJ20_3528 NC_031674.1 4461628 4462194 R uncharacterized protein complement(4461628..4462194) Sugiyamaella lignohabitans 30035560 AWJ20_3529 CDS NSL1 NC_031674.1 4463162 4463809 D MIND complex subunit NSL1 4463162..4463809 Sugiyamaella lignohabitans 30035561 AWJ20_3530 CDS PHO88 NC_031674.1 4464174 4464737 R Probable membrane protein; involved in phosphate transport; role in the maturation of secretory proteins; pho88 pho86 double null mutant exhibits enhanced synthesis of repressible acid phosphatase at high inorganic phosphate concentrations; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 8709965]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006817 - phosphate ion transport [Evidence IEA]; GO_process: GO:0006817 - phosphate ion transport [Evidence IGI,IMP,ISS] [PMID 8709965]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 19433630]; GO_process: GO:0006810 - transport [Evidence IEA]; Pho88p complement(4464174..4464737) Sugiyamaella lignohabitans 30035563 AWJ20_3531 CDS RNH201 NC_031674.1 4465267 4466259 R Ribonuclease H2 catalytic subunit; removes RNA primers during Okazaki fragment synthesis and errant ribonucleotides misincorporated during DNA replication; role in ribonucleotide excision repair; homolog of RNAse HI; related to human AGS4 which causes Aicardi-Goutieres syndrome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11029655]; GO_component: GO:0032299 - ribonuclease H2 complex [Evidence IDA] [PMID 14734815]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA,IEA]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IDA,IMP] [PMID 14734815]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence ISS] [PMID 9462832]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0043137 - DNA replication, removal of RNA primer [Evidence IDA,IGI] [PMID 10567561]; GO_process: GO:0016070 - RNA metabolic process [Evidence IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; Rnh201p complement(4465267..4466259) Sugiyamaella lignohabitans 30035564 AWJ20_3532 CDS KRS1 NC_031674.1 4466447 4467799 R Lysyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 330225]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IDA] [PMID 3888626]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IMP] [PMID 7628447]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IDA] [PMID 3888626]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IMP] [PMID 7628447]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; lysine--tRNA ligase KRS1 complement(4466447..4467799) Sugiyamaella lignohabitans 30035565 AWJ20_3533 CDS AWJ20_3533 NC_031674.1 4468590 4470851 R uncharacterized protein complement(4468590..4470851) Sugiyamaella lignohabitans 30035566 AWJ20_3534 CDS AWJ20_3534 NC_031674.1 4472893 4473435 D uncharacterized protein 4472893..4473435 Sugiyamaella lignohabitans 30035567 AWJ20_3535 CDS TUM1 NC_031674.1 4473831 4474346 R Rhodanese domain sulfur transferase; accepts persulfite from Nfs1p and transfers it to Uba4p in the pathway for 2-thiolation of the wobble uridine base of tRNAs; also stimulates sulfur transfer by Nfs1p; may be mitochondrially localized; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IEA,IEA]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IDA,IMP] [PMID 19151091]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence ISS] [PMID 9153759]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19145231]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19151091]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Tum1p complement(4473831..4474346) Sugiyamaella lignohabitans 30035568 AWJ20_3536 CDS TUM1 NC_031674.1 4474440 4474751 R Rhodanese domain sulfur transferase; accepts persulfite from Nfs1p and transfers it to Uba4p in the pathway for 2-thiolation of the wobble uridine base of tRNAs; also stimulates sulfur transfer by Nfs1p; may be mitochondrially localized; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IEA,IEA]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence IDA,IMP] [PMID 19151091]; GO_function: GO:0004792 - thiosulfate sulfurtransferase activity [Evidence ISS] [PMID 9153759]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19145231]; GO_process: GO:0002143 - tRNA wobble position uridine thiolation [Evidence IMP] [PMID 19151091]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Tum1p complement(4474440..4474751) Sugiyamaella lignohabitans 30035569 AWJ20_3537 CDS KIP3 NC_031674.1 4475108 4477660 R Kinesin-related antiparallel sliding motor protein involved in mitotic spindle positioning; sliding activity promotes bipolar spindle assembly and maintenance of genome stability; also inhibits spindle elongation and promotes spindle disassembly in late anaphase; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 9693366]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IDA] [PMID 9693366]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906145]; GO_function: GO:0008574 - plus-end-directed microtubule motor activity [Evidence IDA] [PMID 16906148]; GO_function: GO:0070463 - tubulin-dependent ATPase activity [Evidence IDA] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IMP] [PMID 16906148]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI,IMP] [PMID 9281582]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 23851487]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 9813090]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IGI,IMP] [PMID 10525539]; GO_process: GO:0031115 - negative regulation of microtubule polymerization [Evidence IMP] [PMID 24616221]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 9693366]; GO_process: GO:0070462 - plus-end specific microtubule depolymerization [Evidence IDA] [PMID 16906145]; GO_process: GO:0070462 - plus-end specific microtubule depolymerization [Evidence IDA] [PMID 16906148]; GO_process: GO:0032888 - regulation of mitotic spindle elongation [Evidence IMP] [PMID 24616221]; GO_process: GO:0090307 - spindle assembly involved in mitosis [Evidence IMP] [PMID 23851487]; tubulin-dependent ATPase KIP3 complement(4475108..4477660) Sugiyamaella lignohabitans 30035570 AWJ20_3538 CDS AWJ20_3538 NC_031674.1 4478713 4479111 D uncharacterized protein 4478713..4479111 Sugiyamaella lignohabitans 30035571 AWJ20_3539 CDS AWJ20_3539 NC_031674.1 4479347 4480228 R uncharacterized protein complement(4479347..4480228) Sugiyamaella lignohabitans 30035572 AWJ20_3540 CDS AWJ20_3540 NC_031674.1 4483563 4487687 R uncharacterized protein complement(join(4483563..4486768,4487549..4487687)) Sugiyamaella lignohabitans 30035574 AWJ20_3541 CDS AWJ20_3541 NC_031674.1 4488426 4489052 R collagen-like protein complement(4488426..4489052) Sugiyamaella lignohabitans 30035575 AWJ20_3542 CDS PDR16 NC_031674.1 4489948 4491060 D Phosphatidylinositol transfer protein (PITP); controlled by the multiple drug resistance regulator Pdr1p; localizes to lipid particles and microsomes; controls levels of various lipids, may regulate lipid synthesis; homologous to Pdr17p; protein abundance increases in response to DNA replication stress; GO_component: GO:0071944 - cell periphery [Evidence IDA] [PMID 12869188]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 12869188]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24403601]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IGI,IMP] [PMID 9890948]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0043942 - negative regulation of sexual sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 24403601]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IGI] [PMID 9890948]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 10848624]; GO_process: GO:0015914 - phospholipid transport [Evidence IGI,IMP] [PMID 9890948]; GO_process: GO:0042493 - response to drug [Evidence IGI] [PMID 9890948]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IGI] [PMID 9890948]; GO_process: GO:0006810 - transport [Evidence IEA]; Pdr16p 4489948..4491060 Sugiyamaella lignohabitans 30035576 AWJ20_3543 CDS BRR2 NC_031674.1 4491452 4497295 D RNA-dependent ATPase RNA helicase (DEIH box); required for disruption of U4/U6 base-pairing in native snRNPs to activate the spliceosome for catalysis; homologous to human U5-200kD; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 8670905]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA,IMP] [PMID 8649518]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IMP] [PMID 9705931]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000388 - spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) [Evidence IMP] [PMID 9705931]; Brr2p 4491452..4497295 Sugiyamaella lignohabitans 30035577 AWJ20_3544 CDS PDR5 NC_031674.1 4498244 4502704 R Plasma membrane ATP-binding cassette (ABC) transporter; multidrug transporter actively regulated by Pdr1p; also involved in steroid transport, cation resistance, and cellular detoxification during exponential growth; PDR5 has a paralog, PDR15, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8810273]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008559 - xenobiotic-transporting ATPase activity [Evidence IDA] [PMID 21207971]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015893 - drug transport [Evidence TAS] [PMID 11421285]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046677 - response to antibiotic [Evidence IEA]; GO_process: GO:0046898 - response to cycloheximide [Evidence IEA]; GO_process: GO:0042493 - response to drug [Evidence TAS] [PMID 11421285]; GO_process: GO:0042493 - response to drug [Evidence IMP] [PMID 17881724]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette multidrug transporter PDR5 complement(4498244..4502704) Sugiyamaella lignohabitans 30035578 AWJ20_3545 CDS AWJ20_3545 NC_031674.1 4508307 4510415 D Usp (universal stress protein) family protein 4508307..4510415 Sugiyamaella lignohabitans 30035579 AWJ20_3546 CDS AWJ20_3546 NC_031674.1 4510574 4511746 R uncharacterized protein complement(4510574..4511746) Sugiyamaella lignohabitans 30035580 AWJ20_3547 CDS AWJ20_3547 NC_031674.1 4512201 4513796 R uncharacterized protein complement(4512201..4513796) Sugiyamaella lignohabitans 30035581 AWJ20_3548 CDS STL1 NC_031674.1 4514921 4515529 R glucose-inactivated glycerol proton symporter STL1 complement(4514921..4515529) Sugiyamaella lignohabitans 30035582 AWJ20_3549 CDS GOR1 NC_031674.1 4517012 4518019 D Glyoxylate reductase; null mutation results in increased biomass after diauxic shift; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IMP] [PMID 17173333]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence ISS] [PMID 9341119]; GO_process: GO:0009436 - glyoxylate catabolic process [Evidence IMP] [PMID 17173333]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence ISS] [PMID 9341119]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Gor1p 4517012..4518019 Sugiyamaella lignohabitans 30035583 AWJ20_3550 CDS STL1 NC_031674.1 4518113 4518796 R glucose-inactivated glycerol proton symporter STL1 complement(4518113..4518796) Sugiyamaella lignohabitans 30035585 AWJ20_3551 CDS STL1 NC_031674.1 4518845 4519705 R glucose-inactivated glycerol proton symporter STL1 complement(4518845..4519705) Sugiyamaella lignohabitans 30035586 AWJ20_3552 CDS AWJ20_3552 NC_031674.1 4520223 4522304 R uncharacterized protein complement(4520223..4522304) Sugiyamaella lignohabitans 30035587 AWJ20_3553 CDS AQR1 NC_031674.1 4522807 4524342 R Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; confers resistance to short-chain monocarboxylic acids and quinidine; involved in the excretion of excess amino acids; AQR1 has a paralog, QDR1, that arose from the whole genome duplication; relocalizes from plasma membrane to cytoplasm upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11922628]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IMP] [PMID 11922628]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IMP] [PMID 11922628]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0032973 - amino acid export [Evidence IGI,IMP] [PMID 15590823]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IMP] [PMID 11922628]; GO_process: GO:0015718 - monocarboxylic acid transport [Evidence IMP] [PMID 11922628]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Aqr1p complement(4522807..4524342) Sugiyamaella lignohabitans 30035588 AWJ20_3554 CDS AWJ20_3554 NC_031674.1 4528603 4529868 D uncharacterized protein 4528603..4529868 Sugiyamaella lignohabitans 30035589 AWJ20_3555 CDS FCY2 NC_031674.1 4530742 4532286 R Purine-cytosine permease; mediates purine (adenine, guanine, and hypoxanthine) and cytosine accumulation; relative distribution to the vacuole increases upon DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8267570]; GO_function: GO:0015212 - cytidine transmembrane transporter activity [Evidence IDA,IMP] [PMID 10501935]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IDA] [PMID 9092500]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015861 - cytidine transport [Evidence IDA,IMP] [PMID 10501935]; GO_process: GO:0015856 - cytosine transport [Evidence IDA] [PMID 9092500]; GO_process: GO:0015851 - nucleobase transport [Evidence IEA]; GO_process: GO:0072530 - purine-containing compound transmembrane transport [Evidence IDA] [PMID 9092500]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Fcy2p complement(4530742..4532286) Sugiyamaella lignohabitans 30035590 AWJ20_3556 CDS ZRT2 NC_031674.1 4535351 4536499 D Low-affinity zinc transporter of the plasma membrane; transcription is induced under low-zinc conditions by the Zap1p transcription factor; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 8798516]; GO_function: GO:0000007 - low-affinity zinc ion transmembrane transporter activity [Evidence IMP,ISS] [PMID 8798516]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006831 - low-affinity zinc ion transport [Evidence IMP,ISS] [PMID 8798516]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0071577 - zinc ion transmembrane transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IEA]; low-affinity Zn(2+) transporter ZRT2 4535351..4536499 Sugiyamaella lignohabitans 30035591 AWJ20_3557 CDS MNN11 NC_031674.1 4536684 4537895 R Subunit of a Golgi mannosyltransferase complex; this complex also contains Anp1p, Mnn9p, Mnn10p, and Hoc1p, and mediates elongation of the polysaccharide mannan backbone; has homology to Mnn10p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10635561]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006486 - protein glycosylation [Evidence IDA,IMP] [PMID 10635561]; Mnn11p complement(4536684..4537895) Sugiyamaella lignohabitans 30035592 AWJ20_3558 CDS CYC8 NC_031674.1 4539017 4542094 R transcription regulator CYC8 complement(4539017..4542094) Sugiyamaella lignohabitans 30035593 AWJ20_3559 CDS DHR2 NC_031674.1 4544460 4547015 R Predominantly nucleolar DEAH-box ATP-dependent RNA helicase; required for 18S rRNA synthesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10982841]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence IDA] [PMID 10982841]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16449634]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IDA,TAS] [PMID 10982841]; Dhr2p complement(4544460..4547015) Sugiyamaella lignohabitans 30035594 AWJ20_3560 CDS RIM9 NC_031674.1 4548419 4550350 D Plasma membrane hypothetical protein; involved in the proteolytic activation of Rim101p in response to alkaline pH; interacts with Rim21p and Dfg16p to form a pH-sensing complex in the Rim101 pathway and is required to maintain Rim21p levels; has similarity to A. nidulans PalI; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23019326]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 8417990]; Rim9p 4548419..4550350 Sugiyamaella lignohabitans 30035596 AWJ20_3561 CDS OPT1 NC_031674.1 4550461 4553184 R Proton-coupled oligopeptide transporter of the plasma membrane; also transports glutathione and phytochelatin; member of the OPT family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IMP,ISS] [PMID 10788431]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 19496824]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IMP] [PMID 10652283]; GO_function: GO:0005427 - proton-dependent oligopeptide secondary active transmembrane transporter activity [Evidence IDA] [PMID 16149917]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA] [PMID 16149917]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence IEP] [PMID 11862495]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; oligopeptide transporter OPT1 complement(4550461..4553184) Sugiyamaella lignohabitans 30035597 AWJ20_3562 CDS ATO2 NC_031674.1 4555419 4556243 R Putative transmembrane protein involved in export of ammonia; ammonia is a starvation signal that promotes cell death in aging colonies; phosphorylated in mitochondria; member of the TC 9.B.33 YaaH family; homolog of Y. lipolytica Gpr1p; ATO2 has a paralog, ADY2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17395151]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IMP] [PMID 12429834]; GO_process: GO:0015696 - ammonium transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEP,IMP] [PMID 12429834]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 12429834]; GO_process: GO:0006810 - transport [Evidence IEA]; putative ammonium permease ATO2 complement(4555419..4556243) Sugiyamaella lignohabitans 30035598 AWJ20_3563 CDS ATO2 NC_031674.1 4558442 4559263 R Putative transmembrane protein involved in export of ammonia; ammonia is a starvation signal that promotes cell death in aging colonies; phosphorylated in mitochondria; member of the TC 9.B.33 YaaH family; homolog of Y. lipolytica Gpr1p; ATO2 has a paralog, ADY2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17395151]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IMP] [PMID 12429834]; GO_process: GO:0015696 - ammonium transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEP,IMP] [PMID 12429834]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 12429834]; GO_process: GO:0006810 - transport [Evidence IEA]; putative ammonium permease ATO2 complement(4558442..4559263) Sugiyamaella lignohabitans 30035599 AWJ20_3564 CDS CDC10 NC_031674.1 4561506 4562636 R Component of the septin ring, required for cytokinesis; septins are GTP-binding proteins that assemble into rod-like hetero-oligomers that can associate to form filaments; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins between mother and daughter cells; N-terminus interacts with phosphatidylinositol-4,5-bisphosphate; protein abundance increases under DNA damage stress; GO_component: GO:0042764 - ascospore-type prospore [Evidence IDA] [PMID 18701287]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 9884239]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 18552279]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0072687 - meiotic spindle [Evidence IDA] [PMID 18826657]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 18826657]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_component: GO:0031105 - septin complex [Evidence IDA] [PMID 18550837]; GO_component: GO:0031105 - septin complex [Evidence IPI] [PMID 9813094]; GO_component: GO:0032160 - septin filament array [Evidence IDA] [PMID 15282341]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 18826657]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 14993234]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0032947 - protein complex scaffold [Evidence IDA] [PMID 15901837]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 18550837]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0010458 - exit from mitosis [Evidence IMP] [PMID 12699621]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IC] [PMID 10882120]; GO_process: GO:0000921 - septin ring assembly [Evidence IMP] [PMID 14993234]; GO_process: GO:0043934 - sporulation [Evidence IDA] [PMID 18701287]; septin CDC10 complement(4561506..4562636) Sugiyamaella lignohabitans 30035600 AWJ20_3565 CDS MRPL32 NC_031674.1 4563754 4564305 D Mitochondrial ribosomal protein of the large subunit; protein abundance increases in response to DNA replication stress; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 16239145]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 2060626]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 2060626]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 2060626]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL32 4563754..4564305 Sugiyamaella lignohabitans 30035601 AWJ20_3566 CDS AWJ20_3566 NC_031674.1 4564619 4566085 D uncharacterized protein 4564619..4566085 Sugiyamaella lignohabitans 30035602 AWJ20_3567 CDS PST2 NC_031674.1 4566335 4567198 R Protein with similarity to a family of flavodoxin-like proteins; induced by oxidative stress in a Yap1p dependent manner; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress; PST2 has a paralog, RFS1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005576 - extracellular region [Evidence IEA,IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19064668]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Pst2p complement(4566335..4567198) Sugiyamaella lignohabitans 30035603 AWJ20_3568 CDS YCP4 NC_031674.1 4570195 4570806 D hypothetical protein; has sequence and structural similarity to flavodoxins; predicted to be palmitoylated; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21442317]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19064668]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence ISS] [PMID 7756978]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0045892 - negative regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Ycp4p 4570195..4570806 Sugiyamaella lignohabitans 30035604 AWJ20_3569 CDS AWJ20_3569 NC_031674.1 4570366 4570728 R uncharacterized protein complement(4570366..4570728) Sugiyamaella lignohabitans 30035605 AWJ20_3570 CDS PDR12 NC_031674.1 4571658 4572620 D Plasma membrane ATP-binding cassette (ABC) transporter; weak-acid-inducible multidrug transporter required for weak organic acid resistance; induced by sorbate and benzoate and regulated by War1p; mutants exhibit sorbate hypersensitivity; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9687494]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0005342 - organic acid transmembrane transporter activity [Evidence IDA] [PMID 10419965]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0015849 - organic acid transport [Evidence IDA] [PMID 10419965]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette multidrug transporter PDR12 4571658..4572620 Sugiyamaella lignohabitans 30035607 AWJ20_3571 CDS SNQ2 NC_031674.1 4572761 4576261 D Plasma membrane ATP-binding cassette (ABC) transporter; multidrug transporter involved in multidrug resistance and resistance to singlet oxygen species; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008559 - xenobiotic-transporting ATPase activity [Evidence TAS] [PMID 10581358]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042493 - response to drug [Evidence TAS] [PMID 11421285]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette transporter SNQ2 4572761..4576261 Sugiyamaella lignohabitans 30035608 AWJ20_3572 CDS TLG2 NC_031674.1 4579117 4580211 R Syntaxin-like t-SNARE; forms a complex with Tlg1p and Vti1p and mediates fusion of endosome-derived vesicles with the late Golgi; binds Vps45p, which prevents Tlg2p degradation and also facilitates t-SNARE complex formation; homologous to mammalian SNARE protein syntaxin 16 (Sx16); GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0031201 - SNARE complex [Evidence IPI] [PMID 10397773]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0031303 - integral component of endosome membrane [Evidence IDA] [PMID 9565594]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 9427746]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 11739407]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 10545112]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IGI] [PMID 18753406]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 9427746]; GO_process: GO:0006673 - inositolphosphoceramide metabolic process [Evidence IGI,IMP] [PMID 18753406]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006675 - mannosyl-inositol phosphorylceramide metabolic process [Evidence IGI,IMP] [PMID 18753406]; GO_process: GO:0032527 - protein exit from endoplasmic reticulum [Evidence IGI] [PMID 18753406]; GO_process: GO:0009306 - protein secretion [Evidence IMP] [PMID 22753847]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11739407]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Tlg2p complement(4579117..4580211) Sugiyamaella lignohabitans 30035609 AWJ20_3573 CDS RPA135 NC_031674.1 4580693 4580977 D RNA polymerase I second largest subunit A135; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0032549 - ribonucleoside binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IGI] [PMID 2023944]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase I core subunit RPA135 4580693..4580977 Sugiyamaella lignohabitans 30035610 AWJ20_3574 CDS RPA135 NC_031674.1 4581076 4584246 D RNA polymerase I second largest subunit A135; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0032549 - ribonucleoside binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IGI] [PMID 2023944]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase I core subunit RPA135 4581076..4584246 Sugiyamaella lignohabitans 30035611 AWJ20_3575 CDS AWJ20_3575 NC_031674.1 4586388 4588928 D uncharacterized protein 4586388..4588928 Sugiyamaella lignohabitans 30035612 AWJ20_3576 CDS ORC6 NC_031674.1 4589019 4590059 R Origin recognition complex subunit 6 complement(4589019..4590059) Sugiyamaella lignohabitans 30035613 AWJ20_3577 CDS PYD3 NC_031674.1 4590979 4592283 D similar to S.kluyveri pyd3 (AAK60518) beta-alanine synthase involved in pyrimidine catabolism; allele of CaO19.1369; putative beta alanine synthase 4590979..4592283 Sugiyamaella lignohabitans 30035614 AWJ20_3578 CDS AWJ20_3578 NC_031674.1 4592348 4592872 R uncharacterized protein complement(4592348..4592872) Sugiyamaella lignohabitans 30035615 AWJ20_3579 CDS ATE1 NC_031674.1 4593411 4594277 D Arginyl-tRNA-protein transferase; catalyzes post-translational conjugation of arginine to the amino termini of acceptor proteins which are then subject to degradation via the N-end rule pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004057 - arginyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004057 - arginyltransferase activity [Evidence IDA,IMP] [PMID 2185248]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0016598 - protein arginylation [Evidence IEA]; GO_process: GO:0016598 - protein arginylation [Evidence IDA,IMP] [PMID 2185248]; Ate1p 4593411..4594277 Sugiyamaella lignohabitans 30035616 AWJ20_3580 CDS DRE2 NC_031674.1 4594392 4595315 R Component of the cytosolic Fe-S protein assembly (CIA) machinery; contains an Fe-S cluster that receives electrons from NADPH via the action of Tah18pin an early step in the CIA pathway; ortholog of human Ciapin1; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18625724]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 18625724]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IMP] [PMID 20802492]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IEA,IEA]; GO_process: GO:0010421 - hydrogen peroxide-mediated programmed cell death [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA,IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 18625724]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 20802492]; GO_process: GO:0043066 - negative regulation of apoptotic process [Evidence IEA]; Dre2p complement(4594392..4595315) Sugiyamaella lignohabitans 30035618 AWJ20_3581 CDS LRO1 NC_031674.1 4597039 4599096 R Acyltransferase that catalyzes diacylglycerol esterification; one of several acyltransferases that contribute to triglyceride synthesis; Lro1p and Dga1p can O-acylate ceramides; putative homolog of human lecithin cholesterol acyltransferase; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 22454508]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0097038 - perinuclear endoplasmic reticulum [Evidence IDA] [PMID 22454508]; GO_function: GO:0008374 - O-acyltransferase activity [Evidence IEA]; GO_function: GO:0046027 - phospholipid:diacylglycerol acyltransferase activity [Evidence IEA]; GO_function: GO:0046027 - phospholipid:diacylglycerol acyltransferase activity [Evidence IDA] [PMID 10747858]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006672 - ceramide metabolic process [Evidence IDA,IMP] [PMID 22738231]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0019915 - lipid storage [Evidence IDA,IMP] [PMID 10747858]; GO_process: GO:0019432 - triglyceride biosynthetic process [Evidence IDA,IMP] [PMID 10747858]; phospholipid:diacylglycerol acyltransferase complement(4597039..4599096) Sugiyamaella lignohabitans 30035619 AWJ20_3582 CDS AWJ20_3582 NC_031674.1 4599928 4601832 D uncharacterized protein 4599928..4601832 Sugiyamaella lignohabitans 30035620 AWJ20_3583 CDS YAK1 NC_031674.1 4603049 4604659 D serine/threonine protein kinase YAK1 4603049..4604659 Sugiyamaella lignohabitans 30035621 AWJ20_3584 CDS YAK1 NC_031674.1 4604760 4606598 D serine/threonine protein kinase YAK1 4604760..4606598 Sugiyamaella lignohabitans 30035622 AWJ20_3585 CDS CDC34 NC_031674.1 4607864 4608385 R Ubiquitin-conjugating enzyme (E2); catalytic subunit of SCF ubiquitin-protein ligase complex (together with Skp1p, Rbx1p, Cdc53p, and an F-box protein) that regulates cell cycle progression by targeting key substrates for degradation; protein abundance increases in response to DNA replication stress; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346238]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IMP] [PMID 9736614]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11080155]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11080155]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8164658]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042803 - protein homodimerization activity [Evidence IDA,IMP] [PMID 7929378]; GO_function: GO:0061630 - ubiquitin protein ligase activity [Evidence IDA] [PMID 9346238]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP,ISS] [PMID 2842867]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 9346239]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence TAS] [PMID 9346231]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 7954792]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 9736614]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0051865 - protein autoubiquitination [Evidence IDA,IMP] [PMID 8383676]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IDA] [PMID 1848239]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; SCF E2 ubiquitin-protein ligase catalytic subunit CDC34 complement(4607864..4608385) Sugiyamaella lignohabitans 30035623 AWJ20_3586 CDS ANT1 NC_031674.1 4610284 4611288 D Peroxisomal adenine nucleotide transporter; involved in beta-oxidation of medium-chain fatty acid; required for peroxisome proliferation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 11566870]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0000295 - adenine nucleotide transmembrane transporter activity [Evidence IMP] [PMID 11390660]; GO_function: GO:0000295 - adenine nucleotide transmembrane transporter activity [Evidence IDA] [PMID 11566870]; GO_process: GO:0015867 - ATP transport [Evidence IDA] [PMID 11566870]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IGI,IMP] [PMID 11390660]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IGI,IMP] [PMID 11566870]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IMP] [PMID 11390660]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ant1p 4610284..4611288 Sugiyamaella lignohabitans 30035624 AWJ20_3587 CDS OPI1 NC_031674.1 4612463 4613872 R transcriptional regulator OPI1 complement(4612463..4613872) Sugiyamaella lignohabitans 30035625 AWJ20_3591 CDS GAL4 NC_031674.1 4618830 4621334 D galactose-responsive transcription factor GAL4 4618830..4621334 Sugiyamaella lignohabitans 30035630 AWJ20_3592 CDS IZH3 NC_031674.1 4622150 4623589 D Membrane protein involved in zinc ion homeostasis; member of the four-protein IZH family, expression induced by zinc deficiency; deletion reduces sensitivity to elevated zinc and shortens lag phase, overexpression reduces Zap1p activity; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0001653 - peptide receptor activity [Evidence ISS] [PMID 15060275]; GO_process: GO:0006882 - cellular zinc ion homeostasis [Evidence IMP] [PMID 15060275]; Izh3p 4622150..4623589 Sugiyamaella lignohabitans 30035631 AWJ20_3593 CDS ARG82 NC_031674.1 4624320 4625432 D Inositol polyphosphate multikinase (IPMK); sequentially phosphorylates Ins(1,4,5)P3 to form Ins(1,3,4,5,6)P5; also has diphosphoinositol polyphosphate synthase activity; regulates arginine-, phosphate-, and nitrogen-responsive genes; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10720331]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3311884]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0000824 - inositol tetrakisphosphate 3-kinase activity [Evidence IDA] [PMID 10574768]; GO_function: GO:0000824 - inositol tetrakisphosphate 3-kinase activity [Evidence IDA] [PMID 10720331]; GO_function: GO:0000825 - inositol tetrakisphosphate 6-kinase activity [Evidence IDA] [PMID 11311242]; GO_function: GO:0000827 - inositol-1,3,4,5,6-pentakisphosphate kinase activity [Evidence IDA] [PMID 11311242]; GO_function: GO:0008440 - inositol-1,4,5-trisphosphate 3-kinase activity [Evidence IEA]; GO_function: GO:0008440 - inositol-1,4,5-trisphosphate 3-kinase activity [Evidence IMP] [PMID 10683435]; GO_function: GO:0000823 - inositol-1,4,5-trisphosphate 6-kinase activity [Evidence IEA]; GO_function: GO:0000823 - inositol-1,4,5-trisphosphate 6-kinase activity [Evidence IDA] [PMID 10574768]; GO_function: GO:0000823 - inositol-1,4,5-trisphosphate 6-kinase activity [Evidence IDA] [PMID 10720331]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0035004 - phosphatidylinositol 3-kinase activity [Evidence IDA] [PMID 16123124]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP,IPI] [PMID 10632874]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA]; GO_process: GO:0032958 - inositol phosphate biosynthetic process [Evidence IDA] [PMID 10574768]; GO_process: GO:0032958 - inositol phosphate biosynthetic process [Evidence IDA] [PMID 11311242]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12828642]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 16123124]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12828642]; GO_process: GO:0050821 - protein stabilization [Evidence IMP] [PMID 10632874]; GO_process: GO:0000821 - regulation of arginine metabolic process [Evidence IMP] [PMID 11119723]; GO_process: GO:0000821 - regulation of arginine metabolic process [Evidence IMP] [PMID 2274024]; GO_process: GO:0000821 - regulation of arginine metabolic process [Evidence IMP] [PMID 8043104]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; inositol polyphosphate multikinase 4624320..4625432 Sugiyamaella lignohabitans 30035632 AWJ20_3594 CDS AWJ20_3594 NC_031674.1 4626766 4627401 D uncharacterized protein 4626766..4627401 Sugiyamaella lignohabitans 30035633 AWJ20_3595 CDS STL1 NC_031674.1 4628745 4629530 D glucose-inactivated glycerol proton symporter STL1 4628745..4629530 Sugiyamaella lignohabitans 30035634 AWJ20_3596 CDS AWJ20_3596 NC_031674.1 4630748 4631221 D uncharacterized protein 4630748..4631221 Sugiyamaella lignohabitans 30035635 AWJ20_3597 CDS GLG1 NC_031674.1 4631332 4633173 R Glycogenin glucosyltransferase; self-glucosylating initiator of glycogen synthesis, also glucosylates n-dodecyl-beta-D-maltoside; similar to mammalian glycogenin; GLG1 has a paralog, GLG2, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008466 - glycogenin glucosyltransferase activity [Evidence IEA]; GO_function: GO:0008466 - glycogenin glucosyltransferase activity [Evidence IGI,ISS] [PMID 8524228]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IGI] [PMID 8524228]; glycogenin glucosyltransferase GLG1 complement(4631332..4633173) Sugiyamaella lignohabitans 30035636 AWJ20_3599 CDS HOF1 NC_031674.1 4635271 4637793 R formin-binding protein HOF1 complement(4635271..4637793) Sugiyamaella lignohabitans 30035638 AWJ20_3600 CDS RPL31B NC_031674.1 4639417 4639629 D Ribosomal 60S subunit protein L31B; associates with karyopherin Sxm1p; loss of both Rpl31p and Rpl39p confers lethality; homologous to mammalian ribosomal protein L31, no bacterial homolog; RPL31B has a paralog, RPL31A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IMP] [PMID 18829863]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L31B 4639417..4639629 Sugiyamaella lignohabitans 30035641 AWJ20_3601 CDS FBA1 NC_031674.1 4642456 4643172 D Fructose 1,6-bisphosphate aldolase; required for glycolysis and gluconeogenesis; catalyzes conversion of fructose 1,6 bisphosphate to glyceraldehyde-3-P and dihydroxyacetone-P; locates to mitochondrial outer surface upon oxidative stress; N-terminally propionylated in vivo; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16806052]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16806052]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_function: GO:0016832 - aldehyde-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA,IEA]; GO_function: GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IDA,IMP] [PMID 2647491]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 6384192]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 6384192]; fructose-bisphosphate aldolase FBA1 4642456..4643172 Sugiyamaella lignohabitans 30035642 AWJ20_3603 CDS TRS130 NC_031674.1 4649075 4652131 D Component of transport protein particle (TRAPP) complex II; TRAPPII is a multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating intra-Golgi and endosome-Golgi traffic; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:0005769 - early endosome [Evidence IDA] [PMID 16314430]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16314430]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IGI,IMP,IPI] [PMID 17041589]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 23078654]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IMP] [PMID 16314430]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 16314430]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 23078654]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IMP] [PMID 17041589]; GO_process: GO:0006810 - transport [Evidence IEA]; Trs130p 4649075..4652131 Sugiyamaella lignohabitans 30035644 AWJ20_3604 CDS AWJ20_3604 NC_031674.1 4652307 4652888 D uncharacterized protein 4652307..4652888 Sugiyamaella lignohabitans 30035645 AWJ20_3605 CDS HEM4 NC_031674.1 4652931 4653728 R Uroporphyrinogen III synthase; catalyzes the conversion of hydroxymethylbilane to uroporphyrinogen III, the fourth step in heme biosynthesis; deficiency in the human homolog can result in the disease congenital erythropoietic porphyria; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004852 - uroporphyrinogen-III synthase activity [Evidence IEA,IEA]; GO_function: GO:0004852 - uroporphyrinogen-III synthase activity [Evidence IMP,ISS] [PMID 7597845]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 14559249]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 18042043]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; GO_process: GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]; uroporphyrinogen-III synthase HEM4 complement(4652931..4653728) Sugiyamaella lignohabitans 30035646 AWJ20_3606 CDS RKM3 NC_031674.1 4654304 4655929 D Ribosomal lysine methyltransferase; specific for monomethylation of Rpl42ap and Rpl42bp (lysine 40); nuclear SET domain containing protein; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016279 - protein-lysine N-methyltransferase activity [Evidence IGI,IMP] [PMID 18957409]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0018026 - peptidyl-lysine monomethylation [Evidence IGI,IMP] [PMID 18957409]; Rkm3p 4654304..4655929 Sugiyamaella lignohabitans 30035647 AWJ20_3607 CDS CTK1 NC_031674.1 4655993 4658302 R cyclin-dependent serine/threonine protein kinase CTK1 complement(4655993..4658302) Sugiyamaella lignohabitans 30035648 AWJ20_3608 CDS GRX5 NC_031674.1 4659484 4659765 D Glutathione-dependent oxidoreductase; hydroperoxide and superoxide-radical responsive; mitochondrial matrix protein involved in the synthesis/assembly of iron-sulfur centers; monothiol glutaredoxin subfamily member along with Grx3p and Grx4p; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 15456753]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence IGI,IMP,ISS] [PMID 10567543]; GO_function: GO:0015036 - disulfide oxidoreductase activity [Evidence IDA] [PMID 12730244]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI,IMP] [PMID 10567543]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence TAS] [PMID 15382238]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 10567543]; monothiol glutaredoxin GRX5 4659484..4659765 Sugiyamaella lignohabitans 30035649 AWJ20_3609 CDS TAD1 NC_031674.1 4659839 4661086 R tRNA-specific adenosine deaminase; deaminates adenosine-37 to inosine in tRNA-Ala; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004000 - adenosine deaminase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043829 - tRNA-specific adenosine-37 deaminase activity [Evidence IDA] [PMID 9707437]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 9707437]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Tad1p complement(4659839..4661086) Sugiyamaella lignohabitans 30035650 AWJ20_3610 CDS DIA4 NC_031674.1 4667586 4669049 D Probable mitochondrial seryl-tRNA synthetase; mutant displays increased invasive and pseudohyphal growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IGI,IMP] [PMID 11747308]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004828 - serine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004828 - serine-tRNA ligase activity [Evidence ISA] [PMID 11063681]; GO_function: GO:0004828 - serine-tRNA ligase activity [Evidence IGI] [PMID 11747308]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IGI] [PMID 11063681]; GO_process: GO:0070158 - mitochondrial seryl-tRNA aminoacylation [Evidence IGI] [PMID 11747308]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 11063681]; GO_process: GO:0097056 - selenocysteinyl-tRNA(Sec) biosynthetic process [Evidence IEA]; GO_process: GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; putative serine--tRNA ligase DIA4 4667586..4669049 Sugiyamaella lignohabitans 30035652 AWJ20_3611 CDS TOM1 NC_031674.1 4669788 4676402 D E3 ubiquitin ligase of the hect-domain class; has a role in mRNA export from the nucleus and may regulate transcriptional coactivators; involved in degradation of excess histones; interacts with Dia2p and is required for Dia2p degradation; required to target Cdc6p for ubiquitin-mediated destruction during G1 phase; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 19578373]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000448 - cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IMP] [PMID 10395901]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IMP] [PMID 10395901]; GO_process: GO:0006997 - nucleus organization [Evidence IMP] [PMID 10395901]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 19578373]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IBA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23129771]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; E3 ubiquitin-protein ligase TOM1 join(4669788..4669835,4669938..4676402) Sugiyamaella lignohabitans 30035653 AWJ20_3612 CDS TOM1 NC_031674.1 4676486 4680991 D E3 ubiquitin ligase of the hect-domain class; has a role in mRNA export from the nucleus and may regulate transcriptional coactivators; involved in degradation of excess histones; interacts with Dia2p and is required for Dia2p degradation; required to target Cdc6p for ubiquitin-mediated destruction during G1 phase; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 19578373]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000448 - cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11238398]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IMP] [PMID 10395901]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IMP] [PMID 10395901]; GO_process: GO:0006997 - nucleus organization [Evidence IMP] [PMID 10395901]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 19578373]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IBA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23129771]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; E3 ubiquitin-protein ligase TOM1 join(4676486..4676831,4676895..4680991) Sugiyamaella lignohabitans 30035654 AWJ20_3613 CDS AWJ20_3613 NC_031674.1 4681293 4682201 D uncharacterized protein 4681293..4682201 Sugiyamaella lignohabitans 30035655 AWJ20_3614 CDS IRA2 NC_031674.1 4684850 4692553 D Ras GTPase activating protein IRA2 4684850..4692553 Sugiyamaella lignohabitans 30035656 AWJ20_3615 CDS REX4 NC_031674.1 4692751 4693620 R Putative RNA exonuclease; possibly involved in pre-rRNA processing and ribosome assembly; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008408 - 3'-5' exonuclease activity [Evidence ISS] [PMID 9396823]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IGI] [PMID 12364601]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IGI] [PMID 12364601]; Rex4p complement(4692751..4693620) Sugiyamaella lignohabitans 30035657 AWJ20_3616 CDS PRP3 NC_031674.1 4693903 4695648 D Splicing factor; component of the U4/U6-U5 snRNP complex; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IEA]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; Prp3p 4693903..4695648 Sugiyamaella lignohabitans 30035658 AWJ20_3617 CDS TAF14 NC_031674.1 4695831 4696427 R Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes; involved in RNA polymerase II transcription initiation and in chromatin modification; contains a YEATS domain; GO_component: GO:0031011 - Ino80 complex [Evidence IDA] [PMID 12887900]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0033100 - NuA3 histone acetyltransferase complex [Evidence IDA] [PMID 10817755]; GO_component: GO:0033100 - NuA3 histone acetyltransferase complex [Evidence IDA] [PMID 17157260]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IPI] [PMID 8668146]; GO_component: GO:0016592 - mediator complex [Evidence IPI] [PMID 7995524]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 12242279]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA,IPI] [PMID 15896708]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 7995524]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IDA] [PMID 14749386]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IC] [PMID 7995524]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 7995524]; GO_process: GO:0006338 - chromatin remodeling [Evidence IC] [PMID 12887900]; GO_process: GO:0006338 - chromatin remodeling [Evidence IC] [PMID 15896708]; GO_process: GO:0006338 - chromatin remodeling [Evidence IC] [PMID 8668146]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10817755]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IDA] [PMID 12887900]; GO_process: GO:0001111 - promoter clearance from RNA polymerase II promoter [Evidence IC] [PMID 7995524]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IC] [PMID 7995524]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 1331084]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IC] [PMID 7995524]; TATA-binding protein-associated factor TAF14 complement(4695831..4696427) Sugiyamaella lignohabitans 30035659 AWJ20_3618 CDS NBP35 NC_031674.1 4698677 4699228 R Essential cytoplasmic iron-sulfur cluster binding protein; forms a complex with Cfd1p that is involved in iron-sulfur protein assembly in the cytosol; similar to P-loop NTPases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15728363]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15728363]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15728363]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8921898]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA,IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IDA] [PMID 17401378]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IMP,ISS] [PMID 8921898]; GO_function: GO:0005506 - iron ion binding [Evidence IMP,IPI] [PMID 15728363]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA,IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 15728363]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IDA] [PMID 17401378]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Nbp35p complement(4698677..4699228) Sugiyamaella lignohabitans 30035660 AWJ20_3619 CDS AIM41 NC_031674.1 4699605 4700243 R hypothetical protein; the authentic protein is detected in highly purified mitochondria in high-throughput studies; null mutant displays reduced frequency of mitochondrial genome loss; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Aim41p complement(4699605..4700243) Sugiyamaella lignohabitans 30035661 AWJ20_3620 CDS MSS1 NC_031674.1 4700334 4702049 D Mitochondrial protein; forms a heterodimer complex with Mto1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; similar to human GTPBP3; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11604502]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISS] [PMID 8392589]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0070899 - mitochondrial tRNA wobble uridine modification [Evidence IMP] [PMID 15509579]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Mss1p 4700334..4702049 Sugiyamaella lignohabitans 30035663 AWJ20_3621 CDS AWJ20_3621 NC_031674.1 4702318 4702809 R uncharacterized protein complement(4702318..4702809) Sugiyamaella lignohabitans 30035664 AWJ20_3622 CDS AWJ20_3622 NC_031674.1 4705174 4708062 R uncharacterized protein complement(4705174..4708062) Sugiyamaella lignohabitans 30035665 AWJ20_3623 CDS AWJ20_3623 NC_031674.1 4708409 4709716 R uncharacterized protein complement(4708409..4709716) Sugiyamaella lignohabitans 30035666 AWJ20_3624 CDS AWJ20_3624 NC_031674.1 4710592 4711101 D top hit is XP_007298107.1 originated in Stereum hirsutum FP-91666 SS1; nuclear movement protein nudC 4710592..4711101 Sugiyamaella lignohabitans 30035667 AWJ20_3625 CDS RAV1 NC_031674.1 4711936 4715598 D Subunit of RAVE complex (Rav1p, Rav2p, Skp1p); the RAVE complex promotes assembly of the V-ATPase holoenzyme; required for transport between the early and late endosome/PVC and for localization of TGN membrane proteins; potential Cdc28p substrate; GO_component: GO:0043291 - RAVE complex [Evidence IPI] [PMID 11283612]; GO_component: GO:0043291 - RAVE complex [Evidence IPI] [PMID 11844802]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11283612]; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 15090613]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0045022 - early endosome to late endosome transport [Evidence IGI,IMP] [PMID 15090613]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0043254 - regulation of protein complex assembly [Evidence IMP,IPI] [PMID 11283612]; GO_process: GO:0043254 - regulation of protein complex assembly [Evidence IGI,IMP] [PMID 11844802]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IGI,IMP] [PMID 11283612]; GO_process: GO:0007035 - vacuolar acidification [Evidence IGI,IMP] [PMID 11844802]; Rav1p 4711936..4715598 Sugiyamaella lignohabitans 30035668 AWJ20_3626 CDS AWJ20_3626 NC_031674.1 4715673 4718369 R uncharacterized protein complement(4715673..4718369) Sugiyamaella lignohabitans 30035669 AWJ20_3627 CDS PRB1 NC_031674.1 4719860 4721458 R Vacuolar proteinase B (yscB) with H3 N-terminal endopeptidase activity; serine protease of the subtilisin family; involved in protein degradation in the vacuole and required for full protein degradation during sporulation; activity inhibited by Pbi2p; protein abundance increases in response to DNA replication stress; PRB1 has a paralog, YSP3, that arose from the whole genome duplication; GO_component: GO:0005619 - ascospore wall [Evidence IBA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence TAS] [PMID 2674123]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence TAS] [PMID 9529893]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042802 - identical protein binding [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence ISA] [PMID 3325823]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 377296]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 385314]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_process: GO:0009267 - cellular response to starvation [Evidence IMP] [PMID 2674123]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IBA,IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 2674123]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 2674123]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 385314]; proteinase B complement(4719860..4721458) Sugiyamaella lignohabitans 30035670 AWJ20_3628 CDS BUD7 NC_031674.1 4727356 4729026 R Member of the ChAPs family (Chs5p-Arf1p-binding proteins); members include Bch1p, Bch2p, Bud7p, and Chs6p; ChAPs family proteins form the exomer complex with Chs5p to mediate export of specific cargo proteins, including Chs3p, from the Golgi to the plasma membrane; BUD7 has a paralog, BCH1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0034044 - exomer complex [Evidence IDA] [PMID 17000877]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030140 - trans-Golgi network transport vesicle [Evidence IDA] [PMID 16498409]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI] [PMID 16498409]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 8657162]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IGI,IPI] [PMID 16498409]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Bud7p complement(4727356..4729026) Sugiyamaella lignohabitans 30035671 AWJ20_3629 CDS ALG12 NC_031674.1 4730034 4731821 R Alpha-1,6-mannosyltransferase localized to the ER; responsible for the addition of the alpha-1,6 mannose to dolichol-linked Man7GlcNAc2, acts in the dolichol pathway for N-glycosylation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IMP] [PMID 10336995]; GO_function: GO:0052917 - dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA,IEA]; GO_process: GO:0006488 - dolichol-linked oligosaccharide biosynthetic process [Evidence IMP] [PMID 10336995]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 10336995]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 12460938]; dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichol alpha-1,6-mannosyltransferase complement(4730034..4731821) Sugiyamaella lignohabitans 30035672 AWJ20_3630 CDS CPR5 NC_031674.1 4733809 4734453 R Peptidyl-prolyl cis-trans isomerase (cyclophilin) of the ER; catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; transcriptionally induced in response to unfolded proteins in the ER; CPR5 has a paralog, CPR2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8377189]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0042277 - peptide binding [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence ISS] [PMID 8377189]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; peptidylprolyl isomerase family protein CPR5 complement(4733809..4734453) Sugiyamaella lignohabitans 30035674 AWJ20_3631 CDS TAF9 NC_031674.1 4734829 4735374 D Subunit (17 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H3; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10818000]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 9844639]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10747053]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; TATA-binding protein-associated factor TAF9 4734829..4735374 Sugiyamaella lignohabitans 30035675 AWJ20_3632 CDS AWJ20_3632 NC_031674.1 4735595 4736779 R uncharacterized protein complement(4735595..4736779) Sugiyamaella lignohabitans 30035676 AWJ20_3633 CDS VPH2 NC_031674.1 4742009 4742827 D Integral membrane protein required for V-ATPase function; not an actual component of the vacuolar H+-ATPase (V-ATPase) complex; functions in the assembly of the V-ATPase; localized to the endoplasmic reticulum (ER); involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 9325326]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007035 - vacuolar acidification [Evidence IMP] [PMID 1628805]; GO_process: GO:0070072 - vacuolar proton-transporting V-type ATPase complex assembly [Evidence IMP] [PMID 9325326]; Vph2p 4742009..4742827 Sugiyamaella lignohabitans 30035677 AWJ20_3634 CDS PRC1 NC_031674.1 4744341 4745675 D Vacuolar carboxypeptidase Y (proteinase C, CPY); broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IDA,IMP] [PMID 8679540]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IDA,IMP] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence TAS] [PMID 8789256]; carboxypeptidase C PRC1 4744341..4745675 Sugiyamaella lignohabitans 30035678 AWJ20_3635 CDS AWJ20_3635 NC_031674.1 4746515 4747651 D uncharacterized protein 4746515..4747651 Sugiyamaella lignohabitans 30035679 AWJ20_3636 CDS AWJ20_3636 NC_031674.1 4748265 4750790 D uncharacterized protein 4748265..4750790 Sugiyamaella lignohabitans 30035680 AWJ20_3637 CDS RPL13A NC_031674.1 4751154 4752265 D Ribosomal 60S subunit protein L13A; not essential for viability; homologous to mammalian ribosomal protein L13, no bacterial homolog; RPL13A has a paralog, RPL13B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L13A join(4751154..4751157,4751631..4752265) Sugiyamaella lignohabitans 30035681 AWJ20_3638 CDS LCB4 NC_031674.1 4752502 4753650 R Sphingoid long-chain base kinase; responsible for synthesis of long-chain base phosphates, which function as signaling molecules, regulates synthesis of ceramide from exogenous long-chain bases, localizes to the Golgi and late endosomes; LCB4 has a paralog, LCB5, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 12459470]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 17686782]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 12493772]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16141212]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16141212]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0017050 - D-erythro-sphingosine kinase activity [Evidence IDA] [PMID 9677363]; GO_function: GO:0003951 - NAD+ kinase activity [Evidence IEA]; GO_function: GO:0004143 - diacylglycerol kinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008481 - sphinganine kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019722 - calcium-mediated signaling [Evidence IMP] [PMID 11278643]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0046834 - lipid phosphorylation [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0007205 - protein kinase C-activating G-protein coupled receptor signaling pathway [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IDA] [PMID 9677363]; sphinganine kinase LCB4 complement(4752502..4753650) Sugiyamaella lignohabitans 30035682 AWJ20_3640 CDS HOG1 NC_031674.1 4758502 4759458 D Mitogen-activated protein kinase involved in osmoregulation; controls global reallocation of RNAPII in osmotic shock; activates CDC28 by stimulating antisense RNA transcription; mediates recruitment/activation of RNAPII at Hot1p-dependent promoters; with Mrc1p defines novel S-phase checkpoint that prevent conflicts between DNA replication and transcription; nuclear form represses pseudohyphal growth; autophosphorylates; protein abundance increases under DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10817757]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10817757]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence IDA] [PMID 10805732]; GO_function: GO:0004707 - MAP kinase activity [Evidence ISS] [PMID 7681220]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 24508389]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0000165 - MAPK cascade [Evidence IEA,IEA]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 12455951]; GO_process: GO:0071470 - cellular response to osmotic stress [Evidence IMP] [PMID 23158682]; GO_process: GO:0006972 - hyperosmotic response [Evidence IMP] [PMID 7681220]; GO_process: GO:0007231 - osmosensory signaling pathway [Evidence IMP] [PMID 7681220]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12743037]; GO_process: GO:0061393 - positive regulation of transcription from RNA polymerase II promoter in response to osmotic stress [Evidence IMP] [PMID 24508389]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 10805732]; GO_process: GO:0033262 - regulation of nuclear cell cycle DNA replication [Evidence IDA] [PMID 23178807]; GO_process: GO:0061392 - regulation of transcription from RNA polymerase II promoter in response to osmotic stress [Evidence IDA] [PMID 23178807]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0046685 - response to arsenic-containing substance [Evidence IGI,IMP] [PMID 16885417]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; mitogen-activated protein kinase HOG1 4758502..4759458 Sugiyamaella lignohabitans 30035685 AWJ20_3641 CDS YCF1 NC_031674.1 4759687 4764387 R Vacuolar glutathione S-conjugate transporter; member of ATP-binding cassette family; ATPase activity required to support vacuole fusion; forms stable complexes with vacuole fusion machinery; regulates Vam7p recruitment to vacuoles; has role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin, selenodigluthatione, and oxidized glutathione; similar to human cystic fibrosis protein CFTR; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23658021]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 8692889]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0015127 - bilirubin transmembrane transporter activity [Evidence IGI,IMP] [PMID 10790694]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 10220408]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12383937]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 12755704]; GO_function: GO:0015431 - glutathione S-conjugate-exporting ATPase activity [Evidence IDA] [PMID 9217966]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015723 - bilirubin transport [Evidence IGI,IMP] [PMID 10790694]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046686 - response to cadmium ion [Evidence IEA]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 10220408]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 12755704]; GO_process: GO:0010038 - response to metal ion [Evidence IDA] [PMID 9217966]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 10790694]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 23658021]; ATP-binding cassette glutathione S-conjugate transporter YCF1 complement(4759687..4764387) Sugiyamaella lignohabitans 30035686 AWJ20_3642 CDS AWJ20_3642 NC_031674.1 4765663 4767255 R uncharacterized protein complement(4765663..4767255) Sugiyamaella lignohabitans 30035687 AWJ20_3643 CDS SPT6 NC_031674.1 4768008 4772421 R chromatin-remodeling histone chaperone SPT6 complement(join(4768008..4772192,4772245..4772421)) Sugiyamaella lignohabitans 30035688 AWJ20_3644 CDS TED1 NC_031674.1 4774445 4775308 D Conserved phosphoesterase domain-containing protein; acts together with Emp24p/Erv25p in cargo exit from the ER; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO); GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 17989219]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Ted1p 4774445..4775308 Sugiyamaella lignohabitans 30035689 AWJ20_3645 CDS LAT1 NC_031674.1 4776815 4778122 D Dihydrolipoamide acetyltransferase component (E2) of the PDC; the pyruvate dehydrogenase complex (PDC) catalyzes the oxidative decarboxylation of pyruvate to acetyl-CoA; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA] [PMID 2007123]; GO_component: GO:0005967 - mitochondrial pyruvate dehydrogenase complex [Evidence IDA,IPI] [PMID 9038189]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045254 - pyruvate dehydrogenase complex [Evidence IEA]; GO_function: GO:0004742 - dihydrolipoyllysine-residue acetyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004742 - dihydrolipoyllysine-residue acetyltransferase activity [Evidence IDA] [PMID 2271545]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IDA] [PMID 7947791]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IEA]; dihydrolipoyllysine-residue acetyltransferase 4776815..4778122 Sugiyamaella lignohabitans 30035690 AWJ20_3646 CDS SEC23 NC_031674.1 4779018 4780847 D GTPase-activating protein, stimulates the GTPase activity of Sar1p; component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat, involved in ER to Golgi transport; substrate of Ubp3/Bre5 complex; ubiquitylated by Ub-ligase Rsp5p; proteasome-mediated degradation of Sec23p is regulated by Cdc48p; GO_component: GO:0030127 - COPII vesicle coat [Evidence IEA]; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 8004676]; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IDA] [PMID 8451644]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0003400 - regulation of COPII vesicle coating [Evidence IDA] [PMID 8451644]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GTPase-activating protein SEC23 4779018..4780847 Sugiyamaella lignohabitans 30035691 AWJ20_3647 CDS CDC3 NC_031674.1 4781302 4782669 D Component of the septin ring that is required for cytokinesis; septins are GTP-binding proteins that assemble with other septins into rod-like complexes that can associate with other rods to form filament polymers; septin rings at the mother-bud neck act as scaffolds for recruiting factors needed for cell division and as barriers to prevent diffusion of specific proteins between mother and daughter cells; GO_component: GO:0005619 - ascospore wall [Evidence IDA] [PMID 8636217]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 1993729]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 8791410]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 18826657]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_component: GO:0031105 - septin complex [Evidence IDA] [PMID 18550837]; GO_component: GO:0031105 - septin complex [Evidence IPI] [PMID 9813094]; GO_component: GO:0032160 - septin filament array [Evidence IDA] [PMID 15282341]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 14597621]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 18550837]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IC] [PMID 10882120]; GO_process: GO:0000281 - mitotic cytokinesis [Evidence IDA] [PMID 12636916]; GO_process: GO:0000921 - septin ring assembly [Evidence IMP] [PMID 15282341]; GO_process: GO:0031107 - septin ring disassembly [Evidence IMP] [PMID 12429908]; septin CDC3 4781302..4782669 Sugiyamaella lignohabitans 30035692 AWJ20_3648 CDS RTT10 NC_031674.1 4783358 4786123 D WD40 domain-containing protein involved in endosomal recycling; forms a complex with Rrt2p that functions in the retromer-mediated pathway for recycling internalized cell-surface proteins; evidence it interacts with Trm7p for 2'-O-methylation of N34 of substrate tRNAs; has a role in regulation of Ty1 transposition; human ortholog is WDR6; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21880895]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 21880895]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 21880895]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Rtt10p 4783358..4786123 Sugiyamaella lignohabitans 30035693 AWJ20_3649 CDS AWJ20_3649 NC_031674.1 4786195 4787526 R uncharacterized protein complement(4786195..4787526) Sugiyamaella lignohabitans 30035694 AWJ20_3650 CDS VPS41 NC_031674.1 4787680 4790634 D Vacuolar membrane protein that is a subunit of the HOPS complex; essential for membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of protein transport; the homotypic vacuole fusion and vacuole protein sorting complex is also known as the HOPS complex; GO_component: GO:0030897 - HOPS complex [Evidence IPI] [PMID 10944212]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9111041]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IPI] [PMID 11062257]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IDA] [PMID 16601699]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IMP] [PMID 9184222]; GO_process: GO:0035542 - regulation of SNARE complex assembly [Evidence IDA] [PMID 18385512]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IDA] [PMID 18385512]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 9159129]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA,IMP] [PMID 10944212]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 9111041]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 12730205]; Vps41p 4787680..4790634 Sugiyamaella lignohabitans 30035696 AWJ20_3651 CDS GAP1 NC_031674.1 4792862 4793179 D General amino acid permease; Gap1p senses the presence of amino acid substrates to regulate localization to the plasma membrane when needed; essential for invasive growth; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 12499351]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15039776]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 15039776]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 9199164]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005771 - multivesicular body [Evidence IMP] [PMID 14523026]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15623581]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15707981]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 6759873]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 15707981]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 6759873]; GO_process: GO:0015846 - polyamine transport [Evidence IMP] [PMID 15707981]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; amino acid permease GAP1 4792862..4793179 Sugiyamaella lignohabitans 30035697 AWJ20_3652 CDS GAP1 NC_031674.1 4794090 4794746 D General amino acid permease; Gap1p senses the presence of amino acid substrates to regulate localization to the plasma membrane when needed; essential for invasive growth; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 12499351]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15039776]; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 15039776]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 9199164]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005771 - multivesicular body [Evidence IMP] [PMID 14523026]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15623581]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15707981]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IMP] [PMID 6759873]; GO_function: GO:0015203 - polyamine transmembrane transporter activity [Evidence IMP] [PMID 15707981]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 6759873]; GO_process: GO:0015846 - polyamine transport [Evidence IMP] [PMID 15707981]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; amino acid permease GAP1 4794090..4794746 Sugiyamaella lignohabitans 30035698 AWJ20_3653 CDS JHD1 NC_031674.1 4794876 4796366 D JmjC domain family histone demethylase specific for H3-K36; similar to proteins found in human, mouse, drosophila, X. laevis, C. elegans, and S. pombe; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0051864 - histone demethylase activity (H3-K36 specific) [Evidence IEA]; GO_function: GO:0051864 - histone demethylase activity (H3-K36 specific) [Evidence IDA] [PMID 16362057]; GO_function: GO:0051864 - histone demethylase activity (H3-K36 specific) [Evidence IMP] [PMID 17369256]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0070544 - histone H3-K36 demethylation [Evidence IEA]; GO_process: GO:0016577 - histone demethylation [Evidence IDA] [PMID 16362057]; GO_process: GO:0016577 - histone demethylation [Evidence IMP] [PMID 17369256]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Jhd1p 4794876..4796366 Sugiyamaella lignohabitans 30035699 AWJ20_3654 CDS COP1 NC_031674.1 4796477 4800025 R Alpha subunit of COPI vesicle coatomer complex; complex surrounds transport vesicles in the early secretory pathway; GO_component: GO:0030126 - COPI vesicle coat [Evidence IEA]; GO_component: GO:0030126 - COPI vesicle coat [Evidence IMP,ISS] [PMID 8001155]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 9427388]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8001155]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA,IEA]; Cop1p complement(4796477..4800025) Sugiyamaella lignohabitans 30035700 AWJ20_3655 CDS AWJ20_3655 NC_031674.1 4800925 4802628 D uncharacterized protein 4800925..4802628 Sugiyamaella lignohabitans 30035701 AWJ20_3656 CDS SQS1 NC_031674.1 4802710 4805088 R Protein that stimulates the ATPase and helicase activities of Prp43p; acts with Prp43p to stimulate 18s rRNA maturation by Nob1p; overexpression antagonizes the suppression of splicing defects by spp382 mutants; component of pre-ribosomal particles; relocalizes from nucleus to nucleolus upon DNA replication stress; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 19927118]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 19927118]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 16227579]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 19927118]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI] [PMID 16945917]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IGI] [PMID 19801658]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IGI] [PMID 19927118]; GO_process: GO:0032781 - positive regulation of ATPase activity [Evidence IDA,IMP] [PMID 19927118]; GO_process: GO:0051096 - positive regulation of helicase activity [Evidence IDA,IMP] [PMID 19927118]; GO_process: GO:0006364 - rRNA processing [Evidence IGI] [PMID 19927118]; Sqs1p complement(4802710..4805088) Sugiyamaella lignohabitans 30035702 AWJ20_3657 CDS AWJ20_3657 NC_031674.1 4805883 4806674 R uncharacterized protein complement(4805883..4806674) Sugiyamaella lignohabitans 30035703 AWJ20_3658 CDS ATG4 NC_031674.1 4807137 4807976 R Conserved cysteine protease required for autophagy; cleaves Atg8p to a form required for autophagosome and Cvt vesicle generation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11149920]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0004197 - cysteine-type endopeptidase activity [Evidence IDA,IMP] [PMID 11038174]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11038174]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 11149920]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 11149920]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0051697 - protein delipidation [Evidence IDA] [PMID 17632063]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 11149920]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 11149920]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg4p complement(4807137..4807976) Sugiyamaella lignohabitans 30035704 AWJ20_3659 CDS RRP40 NC_031674.1 4808882 4809583 D Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain both S1 and KH RNA binding domains; has similarity to human hRrp40p (EXOSC3); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA,IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 17391830]; GO_function: GO:0030145 - manganese ion binding [Evidence IDA] [PMID 17159918]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10465791]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IC] [PMID 10465791]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Rrp40p 4808882..4809583 Sugiyamaella lignohabitans 30035705 AWJ20_3660 CDS FIG4 NC_031674.1 4809715 4811322 R Phosphatidylinositol 3,5-bisphosphate (PtdIns[3,5]P) phosphatase; required for efficient mating and response to osmotic shock; physically associates with and regulated by Vac14p; contains a SAC1-like domain; GO_component: GO:0070772 - PAS complex [Evidence IDA,IPI] [PMID 19037259]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11950935]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14528018]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0043813 - phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 14528018]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IGI] [PMID 11950935]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA] [PMID 14528018]; phosphatidylinositol-3,5-bisphosphate 5-phosphatase complement(4809715..4811322) Sugiyamaella lignohabitans 30035707 AWJ20_3662 CDS PPM2 NC_031674.1 4813262 4816303 D AdoMet-dependent tRNA methyltransferase; also involved in methoxycarbonylation; required for the synthesis of wybutosine (yW), a modified guanosine found at the 3'-position adjacent to the anticodon of phe-tRNA; similarity to Ppm1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IDA,IMP] [PMID 16642040]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA,IMP] [PMID 16642040]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 16642040]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 17150819]; Ppm2p 4813262..4816303 Sugiyamaella lignohabitans 30035708 AWJ20_3663 CDS RTT103 NC_031674.1 4816408 4817628 R Protein involved in transcription termination by RNA polymerase II; interacts with exonuclease Rat1p and Rai1p; has an RPR domain (carboxy-terminal domain interacting domain); also involved in regulation of Ty1 transposition; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 15565157]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0035861 - site of double-strand break [Evidence IDA] [PMID 22355353]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 15565157]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IDA] [PMID 20818393]; GO_process: GO:0042769 - DNA damage response, detection of DNA damage [Evidence IMP] [PMID 22355353]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IGI,IMP] [PMID 15565157]; GO_process: GO:0010526 - negative regulation of transposition, RNA-mediated [Evidence IMP] [PMID 11779788]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rtt103p complement(join(4816408..4817387,4817481..4817628)) Sugiyamaella lignohabitans 30035709 AWJ20_3664 CDS clc1 NC_031674.1 4817897 4818154 D clathrin light chain 4817897..4818154 Sugiyamaella lignohabitans 30035710 AWJ20_3665 CDS AWJ20_3665 NC_031674.1 4821254 4823065 D uncharacterized protein 4821254..4823065 Sugiyamaella lignohabitans 30035711 AWJ20_3666 CDS RUD3 NC_031674.1 4823779 4825542 R Golgi matrix protein; involved in the structural organization of the cis-Golgi; interacts genetically with COG3 and USO1; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence ISS] [PMID 10512869]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005796 - Golgi lumen [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 15504911]; GO_function: GO:0051020 - GTPase binding [Evidence IDA] [PMID 15504911]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 10512869]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 10562277]; GO_process: GO:0000042 - protein targeting to Golgi [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Rud3p complement(4823779..4825542) Sugiyamaella lignohabitans 30035712 AWJ20_3667 CDS RFC1 NC_031674.1 4826110 4828845 D Subunit of heteropentameric Replication factor C (RF-C); RF-C is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IEA]; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IDA] [PMID 7651383]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IEA]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 8995429]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 8770585]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006272 - leading strand elongation [Evidence IDA] [PMID 1346062]; GO_process: GO:0006298 - mismatch repair [Evidence IGI] [PMID 9504910]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IMP] [PMID 6749598]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IMP] [PMID 6749599]; GO_process: GO:0000278 - mitotic cell cycle [Evidence IGI] [PMID 7516465]; replication factor C subunit 1 join(4826110..4826150,4826214..4828845) Sugiyamaella lignohabitans 30035713 AWJ20_3668 CDS AWJ20_3668 NC_031674.1 4829035 4829409 R uncharacterized protein complement(4829035..4829409) Sugiyamaella lignohabitans 30035714 AWJ20_3669 CDS STO1 NC_031674.1 4829503 4832043 D Large subunit of the nuclear mRNA cap-binding protein complex; interacts with Npl3p to carry nuclear poly(A)+ mRNA to cytoplasm; also involved in nuclear mRNA degradation and telomere maintenance; orthologous to mammalian CBP80; GO_component: GO:0000243 - commitment complex [Evidence IPI] [PMID 10072386]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005846 - nuclear cap binding complex [Evidence IEA]; GO_component: GO:0005846 - nuclear cap binding complex [Evidence IDA] [PMID 8811086]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 22072789]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0000339 - RNA cap binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 10072386]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IEA]; GO_process: GO:0016070 - RNA metabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0045292 - mRNA cis splicing, via spliceosome [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10072386]; GO_process: GO:0051028 - mRNA transport [Evidence IEA,IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IDA,IPI] [PMID 15753296]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 22072789]; GO_process: GO:0006810 - transport [Evidence IEA]; Sto1p 4829503..4832043 Sugiyamaella lignohabitans 30035715 AWJ20_3670 CDS TRP3 NC_031674.1 4833546 4835018 R Indole-3-glycerol-phosphate synthase; forms bifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp2p; GO_component: GO:0005950 - anthranilate synthase complex [Evidence IPI] [PMID 3881257]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004049 - anthranilate synthase activity [Evidence IEA]; GO_function: GO:0004049 - anthranilate synthase activity [Evidence IGI] [PMID 3881257]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IMP] [PMID 3881257]; GO_function: GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IGI,ISS] [PMID 6323449]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0000162 - tryptophan biosynthetic process [Evidence IMP] [PMID 10790693]; GO_process: GO:0006568 - tryptophan metabolic process [Evidence IEA]; bifunctional anthranilate synthase/indole-3-glycerol-phosphate synthase complement(4833546..4835018) Sugiyamaella lignohabitans 30035717 AWJ20_3671 CDS AWJ20_3671 NC_031674.1 4836648 4839020 R uncharacterized protein complement(4836648..4839020) Sugiyamaella lignohabitans 30035718 AWJ20_3672 CDS ALG5 NC_031674.1 4841207 4841977 D UDP-glucose:dolichyl-phosphate glucosyltransferase; involved in asparagine-linked glycosylation in the endoplasmic reticulum; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 9560251]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004581 - dolichyl-phosphate beta-glucosyltransferase activity [Evidence IEA]; GO_function: GO:0004581 - dolichyl-phosphate beta-glucosyltransferase activity [Evidence IDA] [PMID 8076653]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence TAS] [PMID 8076653]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; dolichyl-phosphate beta-glucosyltransferase 4841207..4841977 Sugiyamaella lignohabitans 30035719 AWJ20_3673 CDS SAC1 NC_031674.1 4842201 4844057 R Phosphatidylinositol phosphate (PtdInsP) phosphatase; involved in hydrolysis of PtdIns[4]P in the early and medial Golgi; regulated by interaction with Vps74p; ER localized transmembrane protein which cycles through the Golgi; involved in protein trafficking and processing, secretion, and cell wall maintenance; regulates sphingolipid biosynthesis through the modulation of PtdIns(4)P metabolism; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 22553352]; GO_component: GO:0035339 - SPOTS complex [Evidence IDA] [PMID 20182505]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA,IMP] [PMID 15657391]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 8314848]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,IMP] [PMID 11514624]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IMP] [PMID 11792713]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,IMP] [PMID 15657391]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 8314848]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IMP] [PMID 22452743]; GO_function: GO:0043813 - phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10625610]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IDA] [PMID 10625610]; GO_function: GO:0043812 - phosphatidylinositol-4-phosphate phosphatase activity [Evidence IDA] [PMID 10625610]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA,IGI,IMP] [PMID 10625610]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 22553352]; phosphatidylinositol-3-phosphatase SAC1 complement(4842201..4844057) Sugiyamaella lignohabitans 30035720 AWJ20_3674 CDS MRC1 NC_031674.1 4844257 4847597 R chromatin-modulating protein MRC1 complement(join(4844257..4846839,4846905..4847597)) Sugiyamaella lignohabitans 30035721 AWJ20_3675 CDS GUD1 NC_031674.1 4849170 4850045 D Guanine deaminase; a catabolic enzyme of the guanine salvage pathway producing xanthine and ammonia from guanine; activity is low in exponentially-growing cultures but expression is increased in post-diauxic and stationary-phase cultures; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008892 - guanine deaminase activity [Evidence IEA,IEA]; GO_function: GO:0008892 - guanine deaminase activity [Evidence IDA] [PMID 15565584]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence ISS] [PMID 10542258]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006147 - guanine catabolic process [Evidence IEA,IEA]; GO_process: GO:0046098 - guanine metabolic process [Evidence ISS] [PMID 10542258]; guanine deaminase 4849170..4850045 Sugiyamaella lignohabitans 30035722 AWJ20_3676 CDS GND2 NC_031674.1 4850716 4852146 R 6-phosphogluconate dehydrogenase (decarboxylating); catalyzes an NADPH regenerating reaction in the pentose phosphate pathway; required for growth on D-glucono-delta-lactone; GND2 has a paralog, GND1, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence TAS] [PMID 11298766]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA,IEA]; GO_function: GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IMP] [PMID 1328471]; GO_process: GO:0019521 - D-gluconate metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA,IEA,IEA]; GO_process: GO:0009051 - pentose-phosphate shunt, oxidative branch [Evidence IGI,IMP] [PMID 1328471]; phosphogluconate dehydrogenase (decarboxylating) GND2 complement(4850716..4852146) Sugiyamaella lignohabitans 30035723 AWJ20_3677 CDS CFD1 NC_031674.1 4855423 4856241 D Highly conserved iron-sulfur cluster binding protein; localized in the cytoplasm; forms a complex with Nbp35p that is involved in iron-sulfur protein assembly in the cytosol; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12970194]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA,IEA]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IDA] [PMID 17401378]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence TAS] [PMID 12970194]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA,IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 12970194]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IDA] [PMID 17401378]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Cfd1p 4855423..4856241 Sugiyamaella lignohabitans 30035724 AWJ20_3678 CDS AWJ20_3678 NC_031674.1 4856463 4858028 R uncharacterized protein complement(4856463..4858028) Sugiyamaella lignohabitans 30035725 AWJ20_3679 CDS YEA4 NC_031674.1 4858576 4859718 D Uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc) transporter; required for cell wall chitin synthesis; localized to the ER; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10788474]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005462 - UDP-N-acetylglucosamine transmembrane transporter activity [Evidence IMP] [PMID 10788474]; GO_function: GO:0005338 - nucleotide-sugar transmembrane transporter activity [Evidence IEA]; GO_process: GO:0015788 - UDP-N-acetylglucosamine transport [Evidence IMP] [PMID 10788474]; GO_process: GO:0015786 - UDP-glucose transport [Evidence IGI,IMP] [PMID 18693752]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IMP] [PMID 10788474]; GO_process: GO:1901679 - nucleotide transmembrane transport [Evidence IEA]; GO_process: GO:0015780 - nucleotide-sugar transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 10788474]; GO_process: GO:0006810 - transport [Evidence IEA]; Yea4p 4858576..4859718 Sugiyamaella lignohabitans 30035726 AWJ20_3680 CDS AWJ20_3680 NC_031674.1 4859898 4861238 R uncharacterized protein complement(4859898..4861238) Sugiyamaella lignohabitans 30035728 AWJ20_3681 CDS RXT2 NC_031674.1 4863050 4863931 D Component of the histone deacetylase Rpd3L complex; possibly involved in cell fusion and invasive growth; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16314178]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IMP] [PMID 16275642]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0000747 - conjugation with cellular fusion [Evidence IMP] [PMID 10628851]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 10628851]; GO_process: GO:0061188 - negative regulation of chromatin silencing at rDNA [Evidence IMP] [PMID 16286008]; GO_process: GO:0061186 - negative regulation of chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16314178]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 19372273]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16275642]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; Rxt2p 4863050..4863931 Sugiyamaella lignohabitans 30035729 AWJ20_3682 CDS RTT107 NC_031674.1 4864200 4866797 R Protein implicated in Mms22-dependent DNA repair during S phase; involved in recruiting the SMC5/6 complex to double-strand breaks; DNA damage induces phosphorylation by Mec1p at one or more SQ/TQ motifs; interacts with Mms22p and Slx4p; has four BRCT domains; has a role in regulation of Ty1 transposition; relative distribution to nuclear foci increases upon DNA replication stress; GO_component: GO:0035361 - Cul8-RING ubiquitin ligase complex [Evidence IDA] [PMID 20139071]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 14988729]; GO_process: GO:0010526 - negative regulation of transposition, RNA-mediated [Evidence IMP] [PMID 11779788]; Rtt107p complement(4864200..4866797) Sugiyamaella lignohabitans 30035730 AWJ20_3683 CDS YPS3 NC_031674.1 4867879 4869414 D Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 4867879..4869414 Sugiyamaella lignohabitans 30035731 AWJ20_3684 CDS RPG1 NC_031674.1 4869600 4872500 R eIF3a subunit of the eukaryotic translation initiation factor 3 (eIF3); subunit of the core complex of eIF3; essential for translation; part of a Prt1p-Rpg1p-Nip1p subcomplex that stimulates binding of mRNA and tRNA(i)Met to ribosomes; involved in translation reinitiation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IEA,IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IPI] [PMID 9660829]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9671501]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 11302750]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 9671501]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0002188 - translation reinitiation [Evidence IMP] [PMID 20679478]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence IDA] [PMID 9671501]; Rpg1p complement(4869600..4872500) Sugiyamaella lignohabitans 30035732 AWJ20_3685 CDS AWJ20_3685 NC_031674.1 4876090 4880013 D uncharacterized protein 4876090..4880013 Sugiyamaella lignohabitans 30035733 AWJ20_3686 CDS AWJ20_3686 NC_031674.1 4880426 4881277 D uncharacterized protein 4880426..4881277 Sugiyamaella lignohabitans 30035734 AWJ20_3687 CDS RGD2 NC_031674.1 4881855 4884755 D GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 11591390]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IC,IPI] [PMID 11591390]; Rgd2p 4881855..4884755 Sugiyamaella lignohabitans 30035735 AWJ20_3688 CDS COQ8 NC_031674.1 4884829 4886490 R protein kinase COQ8 complement(4884829..4886490) Sugiyamaella lignohabitans 30035736 AWJ20_3689 CDS PRP43 NC_031674.1 4886679 4888955 D RNA helicase in the DEAH-box family; functions in both RNA polymerase I and polymerase II transcript metabolism; catalyzes removal of U2, U5, and U6 snRNPs from the postsplicing lariat-intron ribonucleoprotein complex; required for efficient biogenesis of both small- and large-subunit rRNAs; acts with Sqs1p to promote 20S to 18S rRNA processing catalyzed by endonuclease Nob1p; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0071014 - post-mRNA release spliceosomal complex [Evidence IMP] [PMID 11886864]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IMP] [PMID 11886864]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 17875666]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16382143]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16382143]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IGI] [PMID 19801658]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16382143]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 16227579]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 16382144]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 16382143]; GO_process: GO:0000390 - spliceosomal complex disassembly [Evidence IDA] [PMID 16357217]; GO_process: GO:0000390 - spliceosomal complex disassembly [Evidence IGI] [PMID 17875666]; DEAH-box ATP-dependent RNA helicase PRP43 4886679..4888955 Sugiyamaella lignohabitans 30035737 AWJ20_3691 CDS JLP1 NC_031674.1 4890184 4891335 D Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 4890184..4891335 Sugiyamaella lignohabitans 30035740 AWJ20_3692 CDS UTR2 NC_031674.1 4891559 4892980 R Chitin transglycosylase; functions in the transfer of chitin to beta(1-6) and beta(1-3) glucans in the cell wall; similar to and functionally redundant with Crh1; glycosylphosphatidylinositol (GPI)-anchored protein localized to bud neck; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA,IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 12045225]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IGI,IMP] [PMID 18694928]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IDA] [PMID 23919454]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006037 - cell wall chitin metabolic process [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0071555 - cell wall organization [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 18694928]; Utr2p complement(4891559..4892980) Sugiyamaella lignohabitans 30035741 AWJ20_3707 CDS RIP1 NC_031671.1 2548 3243 D Ubiquinol-cytochrome-c reductase; a Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex; transfers electrons from ubiquinol to cytochrome c1 during respiration; during import, Rip1p is first imported into the mitochondrial matrix where it is processed, acquires its Fe-S cluster, and is folded, then is translocated into the inner membrane by the action of a homo-oligomer of Bcs1p, and finally is delivered by Bcs1p to Complex III for assembly; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 10873857]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 3036836]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016679 - oxidoreductase activity, acting on diphenols and related substances as donors [Evidence IEA]; GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA,IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 3036836]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IDA] [PMID 3036836]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; ubiquinol--cytochrome-c reductase catalytic subunit RIP1 2548..3243 Sugiyamaella lignohabitans 30035758 AWJ20_3708 CDS STE11 NC_031671.1 4851 7451 D mitogen-activated protein kinase kinase kinase STE11 4851..7451 Sugiyamaella lignohabitans 30035759 AWJ20_3709 CDS AWJ20_3709 NC_031671.1 7585 9435 R uncharacterized protein complement(7585..9435) Sugiyamaella lignohabitans 30035760 AWJ20_3710 CDS AWJ20_3710 NC_031671.1 10076 13597 R uncharacterized protein complement(10076..13597) Sugiyamaella lignohabitans 30035762 AWJ20_3711 CDS YDJ1 NC_031671.1 16767 17999 D Type I HSP40 co-chaperone; involved in regulation of HSP90 and HSP70 functions; critical for determining cell size at Start as a function of growth rate; involved in protein translocation across membranes; member of the DnaJ family; GO_component: GO:0072380 - TRC complex [Evidence IDA] [PMID 20850366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 1869583]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 8144572]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 1869583]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 1400408]; GO_function: GO:0001671 - ATPase activator activity [Evidence IDA] [PMID 15342786]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 9774392]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 10567418]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15252059]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 15342786]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9674429]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 1473150]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IMP] [PMID 1729605]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; type I HSP40 co-chaperone YDJ1 16767..17999 Sugiyamaella lignohabitans 30035763 AWJ20_3712 CDS MSG5 NC_031671.1 18485 19930 R tyrosine/serine/threonine protein phosphatase MSG5 complement(18485..19930) Sugiyamaella lignohabitans 30035764 AWJ20_3713 CDS MIC26 NC_031671.1 23143 23877 R Component of the MICOS complex; MICOS (formerly MINOS or MitOS) is a mitochondrial inner membrane complex that extends into the intermembrane space and has a role in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane; Mic26p is a non-essential component of the complex; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21944719]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21987634]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 22009199]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0044284 - mitochondrial crista junction [Evidence IDA] [PMID 22009199]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 21987634]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 22009199]; Mic26p complement(23143..23877) Sugiyamaella lignohabitans 30035765 AWJ20_3714 CDS FRE3 NC_031671.1 24512 26161 R Ferric reductase; reduces siderophore-bound iron prior to uptake by transporters; expression induced by low iron levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9726978]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11120744]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IGI] [PMID 11120744]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence ISA] [PMID 9726978]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEP,IMP] [PMID 10341420]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEP,IMP] [PMID 9726978]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015891 - siderophore transport [Evidence IMP] [PMID 9726978]; Fre3p complement(24512..26161) Sugiyamaella lignohabitans 30035766 AWJ20_3715 CDS AWJ20_3715 NC_031671.1 28670 29821 D uncharacterized protein 28670..29821 Sugiyamaella lignohabitans 30035767 AWJ20_3716 CDS AWJ20_3716 NC_031671.1 31853 32113 R uncharacterized protein complement(31853..32113) Sugiyamaella lignohabitans 30035768 AWJ20_3717 CDS POP2 NC_031671.1 40106 41998 R CCR4-NOT core DEDD family RNase subunit POP2 complement(40106..41998) Sugiyamaella lignohabitans 30035769 AWJ20_3718 CDS SSK2 NC_031671.1 46241 49117 D mitogen-activated protein kinase kinase kinase SSK2 46241..49117 Sugiyamaella lignohabitans 30035770 AWJ20_3719 CDS SSK2 NC_031671.1 49255 51228 D mitogen-activated protein kinase kinase kinase SSK2 49255..51228 Sugiyamaella lignohabitans 30035771 AWJ20_3720 CDS GEF1 NC_031671.1 53001 55439 D Voltage-gated chloride channel; localized to the golgi, the endosomal system, and plasma membrane; involved in cation homeostasis; highly homologous to vertebrate voltage-gated chloride channels; modulates TBSV model (+) RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15710404]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 9614122]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0034707 - chloride channel complex [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 17662057]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15710404]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17662057]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17662057]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0005254 - chloride channel activity [Evidence IEA]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]; GO_function: GO:0005247 - voltage-gated chloride channel activity [Evidence IDA] [PMID 12074596]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9614122]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 9520490]; GO_process: GO:1902476 - chloride transmembrane transport [Evidence IEA]; GO_process: GO:0006821 - chloride transport [Evidence IEA,IEA]; GO_process: GO:0034220 - ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0044070 - regulation of anion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Gef1p 53001..55439 Sugiyamaella lignohabitans 30035773 AWJ20_3721 CDS AWJ20_3721 NC_031671.1 56054 57070 R uncharacterized protein complement(56054..57070) Sugiyamaella lignohabitans 30035774 AWJ20_3722 CDS WHI2 NC_031671.1 58198 59196 D Protein required for full activation of the general stress response; required with binding partner Psr1p, possibly through Msn2p dephosphorylation; regulates growth during the diauxic shift; negative regulator of G1 cyclin expression; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0019211 - phosphatase activator activity [Evidence IMP] [PMID 12090248]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 15020461]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 15020461]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 21429936]; GO_process: GO:0040008 - regulation of growth [Evidence IMP] [PMID 2204680]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 12090248]; GO_process: GO:0009651 - response to salt stress [Evidence IMP] [PMID 12090248]; Whi2p 58198..59196 Sugiyamaella lignohabitans 30035775 AWJ20_3723 CDS COQ3 NC_031671.1 59408 60247 R O-methyltransferase; catalyzes two different O-methylation steps in ubiquinone (Coenzyme Q) biosynthesis; component of a mitochondrial ubiquinone-synthesizing complex; phosphoprotein; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 10419476]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10419476]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10760477]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008425 - 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity [Evidence IEA]; GO_function: GO:0061543 - 3-demethylubiquinone-6 3-O-methyltransferase activity [Evidence IMP] [PMID 10419476]; GO_function: GO:0008689 - 3-demethylubiquinone-9 3-O-methyltransferase activity [Evidence IEA]; GO_function: GO:0004395 - hexaprenyldihydroxybenzoate methyltransferase activity [Evidence IEA]; GO_function: GO:0004395 - hexaprenyldihydroxybenzoate methyltransferase activity [Evidence IMP] [PMID 1885593]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IDA] [PMID 10419476]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 1885593]; hexaprenyldihydroxybenzoate methyltransferase complement(59408..60247) Sugiyamaella lignohabitans 30035776 AWJ20_3724 CDS AWJ20_3724 NC_031671.1 61623 61943 R uncharacterized protein complement(61623..61943) Sugiyamaella lignohabitans 30035777 AWJ20_3725 CDS PMT1 NC_031671.1 62521 65175 R dolichyl-phosphate-mannose-protein mannosyltransferase PMT1 complement(62521..65175) Sugiyamaella lignohabitans 30035778 AWJ20_3726 CDS HOL1 NC_031671.1 70237 71922 D Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8955402]; GO_function: GO:0015665 - alcohol transmembrane transporter activity [Evidence IMP] [PMID 2405251]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IMP] [PMID 8955402]; GO_process: GO:0006812 - cation transport [Evidence IMP] [PMID 8955402]; GO_process: GO:0015850 - organic hydroxy compound transport [Evidence IMP] [PMID 2405251]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hol1p 70237..71922 Sugiyamaella lignohabitans 30035779 AWJ20_3727 CDS MNN10 NC_031671.1 75187 76836 D Subunit of a Golgi mannosyltransferase complex; complex mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family; other members of the complex are Anp1p, Mnn9p, Mnn11p, and Hoc1p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 10037752]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 16034811]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 10037752]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 8991513]; Mnn10p 75187..76836 Sugiyamaella lignohabitans 30035780 AWJ20_3728 CDS FPK1 NC_031671.1 78829 81855 D serine/threonine protein kinase FPK1 78829..81855 Sugiyamaella lignohabitans 30035781 AWJ20_3729 CDS FEX2 NC_031671.1 81989 83152 R Protein involved in fluoride export; nearly identical to FEX1, and deletion of both proteins results in a large increase in fluoride sensitivity compared with the single mutant; contains two FEX domains connected by a linker; part of a widespread family of conserved fluoride export proteins; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fex2p complement(81989..83152) Sugiyamaella lignohabitans 30035782 AWJ20_3730 CDS GCN3 NC_031671.1 84401 84823 D Alpha subunit of translation initiation factor eIF2B; guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; positive regulator of GCN4 expression; assembles into filaments with Gcd2p, Gcd6p, Gcd7p, and Sui2p as cells approach stationary phase and under cytosolic acidification and starvation conditions; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IMP] [PMID 8099443]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA] [PMID 8336705]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IPI] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 8506384]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IMP] [PMID 8099443]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI,IMP,IPI] [PMID 8887689]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IMP] [PMID 9032257]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 8506384]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IMP] [PMID 8099443]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 8336705]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 8099443]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA] [PMID 8506384]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IPI] [PMID 8887689]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 9032257]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; translation initiation factor eIF2B subunit alpha 84401..84823 Sugiyamaella lignohabitans 30035784 AWJ20_3731 CDS RPC37 NC_031671.1 85030 85836 R RNA polymerase III subunit C37; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rpc37p complement(85030..85836) Sugiyamaella lignohabitans 30035785 AWJ20_3732 CDS DBP7 NC_031671.1 86579 88897 D Putative ATP-dependent RNA helicase of the DEAD-box family; involved in ribosomal biogenesis; required at post-transcriptional step for efficient retrotransposition; essential for growth under anaerobic conditions; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9582098]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 10322435]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9582098]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Dbp7p 86579..88897 Sugiyamaella lignohabitans 30035786 AWJ20_3733 CDS AWJ20_3733 NC_031671.1 93699 95492 D uncharacterized protein 93699..95492 Sugiyamaella lignohabitans 30035787 AWJ20_3734 CDS AWJ20_3734 NC_031671.1 98087 100627 D uncharacterized protein 98087..100627 Sugiyamaella lignohabitans 30035788 AWJ20_3735 CDS HHT2 NC_031671.1 101761 102183 R Histone H3; core histone protein required for chromatin assembly, part of heterochromatin-mediated telomeric and HM silencing; one of two identical histone H3 proteins (see HHT2); regulated by acetylation, methylation, and phosphorylation; H3K14 acetylation plays an important role in the unfolding of strongly positioned nucleosomes during repair of UV damage; GO_component: GO:0043505 - centromere-specific nucleosome [Evidence IDA] [PMID 22693454]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0070911 - global genome nucleotide-excision repair [Evidence IMP] [PMID 21460225]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI] [PMID 19917722]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 16002464]; GO_process: GO:0043935 - sexual sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 20713519]; histone H3 complement(101761..102183) Sugiyamaella lignohabitans 30035789 AWJ20_3736 CDS HHF2 NC_031671.1 103937 104248 D Histone H4; core histone protein required for chromatin assembly and chromosome function; one of two identical histone proteins (see also HHF2); contributes to telomeric silencing; N-terminal domain involved in maintaining genomic integrity; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0034729 - histone H3-K79 methylation [Evidence IMP] [PMID 18158898]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0043935 - sexual sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 20713519]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; histone H4 103937..104248 Sugiyamaella lignohabitans 30035790 AWJ20_3737 CDS RKI1 NC_031671.1 104583 105596 D Ribose-5-phosphate ketol-isomerase; catalyzes the interconversion of ribose 5-phosphate and ribulose 5-phosphate in the pentose phosphate pathway; participates in pyridoxine biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IMP,ISS] [PMID 8929392]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IGI] [PMID 8929392]; GO_process: GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]; GO_process: GO:0008615 - pyridoxine biosynthetic process [Evidence IMP] [PMID 14690456]; ribose-5-phosphate isomerase RKI1 104583..105596 Sugiyamaella lignohabitans 30035791 AWJ20_3738 CDS APM1 NC_031671.1 108260 109582 R Mu1-like medium subunit of the AP-1 complex; binds clathrin; involved in clathrin-dependent Golgi protein sorting; the AP-1 complex is the clathrin-associated protein complex; GO_component: GO:0030121 - AP-1 adaptor complex [Evidence IPI,ISS] [PMID 10564262]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0016023 - cytoplasmic membrane-bounded vesicle [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IPI,ISS] [PMID 10564262]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 17003107]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IPI,ISS] [PMID 10564262]; Apm1p complement(108260..109582) Sugiyamaella lignohabitans 30035792 AWJ20_3739 CDS AWJ20_3739 NC_031671.1 108522 108920 D uncharacterized protein 108522..108920 Sugiyamaella lignohabitans 30035793 AWJ20_3740 CDS AWJ20_3740 NC_031671.1 111418 113187 R uncharacterized protein complement(111418..113187) Sugiyamaella lignohabitans 30035795 AWJ20_3741 CDS PET127 NC_031671.1 115364 117727 D Protein with a role in 5'-end processing of mitochondrial RNAs; located in the mitochondrial membrane; GO_component: GO:0005740 - mitochondrial envelope [Evidence IDA] [PMID 9111353]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000964 - mitochondrial RNA 5'-end processing [Evidence IMP] [PMID 18086665]; GO_process: GO:0000964 - mitochondrial RNA 5'-end processing [Evidence IMP] [PMID 9111353]; Pet127p 115364..117727 Sugiyamaella lignohabitans 30035796 AWJ20_3742 CDS THI73 NC_031671.1 117861 118880 R Putative plasma membrane permease; proposed to be involved in carboxylic acid uptake and repressed by thiamine; substrate of Dbf2p/Mob1p kinase; transcription is altered if mitochondrial dysfunction occurs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16850348]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 10869563]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 10869563]; Thi73p complement(117861..118880) Sugiyamaella lignohabitans 30035797 AWJ20_3743 CDS HHO1 NC_031671.1 120325 120753 R Histone H1, linker histone with roles in meiosis and sporulation; decreasing levels early in sporulation may promote meiosis, and increasing levels during sporulation facilitate compaction of spore chromatin; binds to promoters and within genes in mature spores; may be recruited by Ume6p to promoter regions, contributing to transcriptional repression outside of meiosis; suppresses DNA repair involving homologous recombination; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 22586276]; GO_component: GO:0000788 - nuclear nucleosome [Evidence IPI] [PMID 11574687]; GO_component: GO:0000786 - nucleosome [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9046096]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IPI] [PMID 11574687]; GO_process: GO:0030261 - chromosome condensation [Evidence IMP] [PMID 22586276]; GO_process: GO:0045910 - negative regulation of DNA recombination [Evidence IGI,IMP] [PMID 12820979]; GO_process: GO:0031936 - negative regulation of chromatin silencing [Evidence IGI] [PMID 19017647]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 11574687]; histone H1 complement(120325..120753) Sugiyamaella lignohabitans 30035798 AWJ20_3744 CDS SEF1 NC_031671.1 126947 128770 D Putative transcription factor; has homolog in Kluyveromyces lactis; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Sef1p 126947..128770 Sugiyamaella lignohabitans 30035799 AWJ20_3745 CDS HIS2 NC_031671.1 129030 129977 D Histidinolphosphatase; catalyzes the eighth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004401 - histidinol-phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004401 - histidinol-phosphatase activity [Evidence IMP] [PMID 14190241]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0000105 - histidine biosynthetic process [Evidence IMP] [PMID 14190241]; histidinol-phosphatase 129030..129977 Sugiyamaella lignohabitans 30035800 AWJ20_3746 CDS AWJ20_3746 NC_031671.1 130088 131074 R putative ribonuclease H1 complement(130088..131074) Sugiyamaella lignohabitans 30035801 AWJ20_3747 CDS AWJ20_3747 NC_031671.1 132003 134147 R Prolyl-tRNA synthetase; N-terminal domain shows weak homology to prokaryotic posttransfer editing domain, but does not possess posttransfer editing activity; may interact with ribosomes, based on co-purification experiments; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004827 - proline-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004827 - proline-tRNA ligase activity [Evidence IDA] [PMID 16864571]; GO_process: GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006433 - prolyl-tRNA aminoacylation [Evidence IDA] [PMID 16864571]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; proline--tRNA ligase complement(132003..134147) Sugiyamaella lignohabitans 30035802 AWJ20_3748 CDS DED81 NC_031671.1 134668 136368 D Cytosolic asparaginyl-tRNA synthetase; required for protein synthesis, catalyzes the specific attachment of asparagine to its cognate tRNA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IC] [PMID 9605503]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004816 - asparagine-tRNA ligase activity [Evidence IDA,ISS] [PMID 9605503]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IDA,IGI,ISS] [PMID 9605503]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; asparagine--tRNA ligase DED81 134668..136368 Sugiyamaella lignohabitans 30035803 AWJ20_3749 CDS SPS19 NC_031671.1 137503 138333 R Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p complement(137503..138333) Sugiyamaella lignohabitans 30035804 AWJ20_3750 CDS AWJ20_3750 NC_031671.1 143207 144166 R uncharacterized protein complement(143207..144166) Sugiyamaella lignohabitans 30035806 AWJ20_3751 CDS PRE5 NC_031671.1 144714 145349 R Alpha 6 subunit of the 20S proteasome; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 9087403]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 6 complement(144714..145349) Sugiyamaella lignohabitans 30035807 AWJ20_3752 CDS ERV29 NC_031671.1 147370 148341 R Protein localized to COPII-coated vesicles; involved in vesicle formation and incorporation of specific secretory cargo; protein abundance increases in response to DNA replication stress; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 11157978]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IPI] [PMID 11157978]; Erv29p complement(147370..148341) Sugiyamaella lignohabitans 30035808 AWJ20_3753 CDS AWJ20_3753 NC_031671.1 149580 152039 D uncharacterized protein 149580..152039 Sugiyamaella lignohabitans 30035809 AWJ20_3754 CDS UBI4 NC_031671.1 153893 154890 D Ubiquitin; becomes conjugated to proteins, marking them for selective degradation via the ubiquitin-26S proteasome system; essential for the cellular stress response; encoded as a polyubiquitin precursor comprised of 5 head-to-tail repeats; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 8982460]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0043008 - ATP-dependent protein binding [Evidence TAS] [PMID 8982460]; GO_function: GO:0031386 - protein tag [Evidence ISS] [PMID 3038523]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence TAS] [PMID 8982460]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016579 - protein deubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0006513 - protein monoubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0000209 - protein polyubiquitination [Evidence TAS] [PMID 8982460]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 8035826]; ubiquitin join(153893..154414,154870..154890) Sugiyamaella lignohabitans 30035810 AWJ20_3755 CDS INO1 NC_031671.1 159786 161393 D Inositol-3-phosphate synthase; involved in synthesis of inositol phosphates and inositol-containing phospholipids; transcription is coregulated with other phospholipid biosynthetic genes by Ino2p and Ino4p, which bind the UASINO DNA element; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004512 - inositol-3-phosphate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004512 - inositol-3-phosphate synthase activity [Evidence IMP] [PMID 7016881]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_process: GO:0006021 - inositol biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006021 - inositol biosynthetic process [Evidence IMP] [PMID 7016881]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; inositol-3-phosphate synthase INO1 159786..161393 Sugiyamaella lignohabitans 30035811 AWJ20_3756 CDS AWJ20_3756 NC_031671.1 160002 160460 R myo-inositol-1-phosphate synthase complement(160002..160460) Sugiyamaella lignohabitans 30035812 AWJ20_3757 CDS KIP2 NC_031671.1 162215 164302 R Kinesin-related motor protein involved in mitotic spindle positioning; stabilizes microtubules by targeting Bik1p to the plus end; Kip2p levels are controlled during the cell cycle; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 9693366]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005871 - kinesin complex [Evidence IEA]; GO_component: GO:0005871 - kinesin complex [Evidence TAS] [PMID 9153752]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008017 - microtubule binding [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence IEA]; GO_function: GO:0003777 - microtubule motor activity [Evidence TAS] [PMID 9153752]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007018 - microtubule-based movement [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007026 - negative regulation of microtubule depolymerization [Evidence IMP] [PMID 9693366]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IMP] [PMID 9693366]; Kip2p complement(162215..164302) Sugiyamaella lignohabitans 30035813 AWJ20_3758 CDS TPM2 NC_031671.1 165741 166356 D Minor isoform of tropomyosin; binds to and stabilizes actin cables and filaments, which direct polarized cell growth and the distribution of several organelles; appears to have distinct and also overlapping functions with Tpm1p; TPM2 has a paralog, TPM1, that arose from the whole genome duplication; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 9864365]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 9864365]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0003786 - actin lateral binding [Evidence TAS] [PMID 9153752]; GO_process: GO:0051017 - actin filament bundle assembly [Evidence IGI] [PMID 9864365]; GO_process: GO:0007015 - actin filament organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0008154 - actin polymerization or depolymerization [Evidence TAS] [PMID 10652251]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence TAS] [PMID 10652251]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence TAS] [PMID 10652251]; GO_process: GO:0030010 - establishment of cell polarity [Evidence TAS] [PMID 10652251]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence TAS] [PMID 10652251]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence TAS] [PMID 10652251]; GO_process: GO:0000011 - vacuole inheritance [Evidence TAS] [PMID 10652251]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence TAS] [PMID 10652251]; tropomyosin TPM2 join(165741..165758,165913..166356) Sugiyamaella lignohabitans 30035814 AWJ20_3759 CDS AWJ20_3759 NC_031671.1 166994 168097 D uncharacterized protein 166994..168097 Sugiyamaella lignohabitans 30035815 AWJ20_3760 CDS ACC1 NC_031671.1 173456 179983 D Acetyl-CoA carboxylase, biotin containing enzyme; catalyzes carboxylation of cytosolic acetyl-CoA to form malonyl-CoA and regulates histone acetylation by regulating the availablity of acetyl-CoA; required for de novo biosynthesis of long-chain fatty acids; ACC1 has a paralog, HFA1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 9438137]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA,IEA]; GO_function: GO:0003989 - acetyl-CoA carboxylase activity [Evidence IMP,ISS] [PMID 8098706]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence ISS] [PMID 1350093]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence IMP] [PMID 6108218]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0042759 - long-chain fatty acid biosynthetic process [Evidence IMP] [PMID 6103540]; GO_process: GO:2001295 - malonyl-CoA biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0006998 - nuclear envelope organization [Evidence TAS] [PMID 9442897]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12730220]; acetyl-CoA carboxylase ACC1 173456..179983 Sugiyamaella lignohabitans 30035817 AWJ20_3761 CDS AWJ20_3761 NC_031671.1 177241 177642 R uncharacterized protein complement(177241..177642) Sugiyamaella lignohabitans 30035818 AWJ20_3762 CDS ERT1 NC_031671.1 180252 182000 R Transcriptional regulator of nonfermentable carbon utilization; GFP-fusion protein localizes to cytoplasm, nucleus; null mutation affects periodicity of transcriptional and metabolic oscillation; plays role in restricting Ty1 transposition; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ert1p complement(180252..182000) Sugiyamaella lignohabitans 30035819 AWJ20_3763 CDS AAP1 NC_031671.1 185275 187482 D Arginine/alanine amino peptidase; overproduction stimulates glycogen accumulation; AAP1 has a paralog, APE2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence ISS] [PMID 8100228]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IMP] [PMID 8100228]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IMP] [PMID 8100228]; Aap1p 185275..187482 Sugiyamaella lignohabitans 30035820 AWJ20_3764 CDS AWJ20_3764 NC_031671.1 194525 195049 D uncharacterized protein 194525..195049 Sugiyamaella lignohabitans 30035821 AWJ20_3765 CDS RIM15 NC_031671.1 195959 201064 D protein kinase RIM15 195959..201064 Sugiyamaella lignohabitans 30035822 AWJ20_3766 CDS SIS2 NC_031671.1 201367 203100 R Negative regulatory subunit of protein phosphatase 1 (Ppz1p); involved in coenzyme A biosynthesis; subunit of phosphopantothenoylcysteine decarboxylase (PPCDC: Cab3p, Sis2p, Vhs3p) complex and the CoA-Synthesizing Protein Complex (CoA-SPC: Cab2p, Cab3p, Cab4p, Cab5p, Sis2p and Vhs3p); SIS2 has a paralog, VHS3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC,IPI] [PMID 9636153]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7705654]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 9636153]; GO_component: GO:0071513 - phosphopantothenoylcysteine decarboxylase complex [Evidence IDA] [PMID 19915539]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence ISS] [PMID 10592175]; GO_function: GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence IDA,IMP] [PMID 19915539]; GO_function: GO:0004864 - protein phosphatase inhibitor activity [Evidence IEA]; GO_function: GO:0004864 - protein phosphatase inhibitor activity [Evidence IDA] [PMID 9636153]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 10592175]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IEA]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IGI] [PMID 10022927]; GO_process: GO:0009651 - response to salt stress [Evidence IGI,IMP] [PMID 9636153]; phosphopantothenoylcysteine decarboxylase complex subunit SIS2 complement(201367..203100) Sugiyamaella lignohabitans 30035823 AWJ20_3767 CDS PHO80 NC_031671.1 206522 208168 D Cyclin; interacts with cyclin-dependent kinase Pho85p; regulates the response to nutrient levels and environmental conditions, including the response to phosphate limitation and stress-dependent calcium signaling; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 8108735]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9853758]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IDA] [PMID 8108735]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0006875 - cellular metal ion homeostasis [Evidence IMP] [PMID 20429018]; GO_process: GO:0050849 - negative regulation of calcium-mediated signaling [Evidence IGI] [PMID 16455487]; GO_process: GO:0016242 - negative regulation of macroautophagy [Evidence IMP] [PMID 20417603]; GO_process: GO:0045936 - negative regulation of phosphate metabolic process [Evidence IGI] [PMID 3915785]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 3915785]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 8108735]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 16455487]; Pho80p 206522..208168 Sugiyamaella lignohabitans 30035824 AWJ20_3768 CDS ECT1 NC_031671.1 209713 210915 D Ethanolamine-phosphate cytidylyltransferase; catalyzes the second step of phosphatidylethanolamine biosynthesis; involved in the maintenance of plasma membrane; similar to mammalian CTP: phosphocholine cytidylyl-transferases; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004306 - ethanolamine-phosphate cytidylyltransferase activity [Evidence IEA]; GO_function: GO:0004306 - ethanolamine-phosphate cytidylyltransferase activity [Evidence IDA,IMP,ISS] [PMID 8982874]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IEA]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IMP] [PMID 8982874]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; ethanolamine-phosphate cytidylyltransferase 209713..210915 Sugiyamaella lignohabitans 30035825 AWJ20_3769 CDS CHS1 NC_031671.1 214505 217816 D Chitin synthase I; requires activation from zymogenic form in order to catalyze the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for repairing the chitin septum during cytokinesis; transcription activated by mating factor; GO_component: GO:0045009 - chitosome [Evidence IDA] [PMID 8970154]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8970154]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA,IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IDA] [PMID 7952171]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0006031 - chitin biosynthetic process [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 2523889]; chitin synthase CHS1 214505..217816 Sugiyamaella lignohabitans 30035826 AWJ20_3770 CDS dtd NC_031671.1 218027 218737 D Fungal Genetics Stock Center 12543; D-tyrosyl-tRNA(Tyr) deacylase 218027..218737 Sugiyamaella lignohabitans 30035828 AWJ20_3771 CDS AWJ20_3771 NC_031671.1 222301 223590 D uncharacterized protein 222301..223590 Sugiyamaella lignohabitans 30035829 AWJ20_3772 CDS UTP14 NC_031671.1 223899 226607 D Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp14p 223899..226607 Sugiyamaella lignohabitans 30035830 AWJ20_3773 CDS XBP1 NC_031671.1 232657 235095 D Transcriptional repressor; binds to promoter sequences of the cyclin genes, CYS3, and SMF2; expression is induced by stress or starvation during mitosis, and late in meiosis; member of the Swi4p/Mbp1p family; potential Cdc28p substrate; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA,IPI] [PMID 9343412]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IDA] [PMID 9343412]; GO_process: GO:0042149 - cellular response to glucose starvation [Evidence IMP] [PMID 9343412]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 9343412]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 9343412]; GO_process: GO:0071472 - cellular response to salt stress [Evidence IMP] [PMID 9343412]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Xbp1p 232657..235095 Sugiyamaella lignohabitans 30035831 AWJ20_3774 CDS RSM10 NC_031671.1 235754 236602 R Mitochondrial ribosomal protein of the small subunit; has similarity to E. coli S10 ribosomal protein; essential for viability, unlike most other mitoribosomal proteins; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein RSM10 complement(235754..236602) Sugiyamaella lignohabitans 30035832 AWJ20_3775 CDS BMT2 NC_031671.1 237120 237908 D Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase; methylates adenine (m1A) of the large subunit (LSU) rRNA at position 2142; belongs to Rossmann fold superfamily; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus; YBR141C is not an essential gene; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 23558746]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISM] [PMID 19351663]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IMP] [PMID 23558746]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IEA,IEA]; Bmt2p 237120..237908 Sugiyamaella lignohabitans 30035833 AWJ20_3776 CDS AVT1 NC_031671.1 238833 240815 R Vacuolar transporter; imports large neutral amino acids into the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11274162]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11274162]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015186 - L-glutamine transmembrane transporter activity [Evidence IMP] [PMID 11274162]; GO_function: GO:0015188 - L-isoleucine transmembrane transporter activity [Evidence IMP] [PMID 11274162]; GO_function: GO:0005302 - L-tyrosine transmembrane transporter activity [Evidence IMP] [PMID 11274162]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11274162]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IMP] [PMID 11274162]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007034 - vacuolar transport [Evidence IMP] [PMID 11274162]; Avt1p complement(238833..240815) Sugiyamaella lignohabitans 30035834 AWJ20_3777 CDS AWJ20_3777 NC_031671.1 242840 243553 D uncharacterized protein 242840..243553 Sugiyamaella lignohabitans 30035835 AWJ20_3778 CDS AWJ20_3778 NC_031671.1 243867 245744 R uncharacterized protein complement(243867..245744) Sugiyamaella lignohabitans 30035836 AWJ20_3779 CDS YPT7 NC_031671.1 247766 248209 D Rab family GTPase; GTP-binding protein of the rab family; required for homotypic fusion event in vacuole inheritance, for endosome-endosome fusion; interacts with the cargo selection/retromer complex for retrograde sorting; similar to mammalian Rab7; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11853670]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22593205]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IPI] [PMID 22593205]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence TAS] [PMID 9714809]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 1473149]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0072665 - protein localization to vacuole [Evidence IMP] [PMID 22593205]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 11598008]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 7489715]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 22593205]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0000011 - vacuole inheritance [Evidence IDA] [PMID 7489715]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IDA] [PMID 9015302]; Rab family GTPase YPT7 247766..248209 Sugiyamaella lignohabitans 30035837 AWJ20_3780 CDS ACS2 NC_031671.1 250075 252407 D Acetyl-coA synthetase isoform; along with Acs1p, acetyl-coA synthetase isoform is the nuclear source of acetyl-coA for histone acetylation; mutants affect global transcription; required for growth on glucose; expressed under anaerobic conditions; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16857587]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9711835]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 19618123]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16857587]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19618123]; GO_function: GO:0016208 - AMP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003987 - acetate-CoA ligase activity [Evidence IEA,IEA]; GO_function: GO:0003987 - acetate-CoA ligase activity [Evidence IDA] [PMID 8910545]; GO_function: GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IDA] [PMID 18305111]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006085 - acetyl-CoA biosynthetic process [Evidence IDA] [PMID 8910545]; GO_process: GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 16857587]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 19618123]; acetate--CoA ligase ACS2 join(250075..250118,250484..252407) Sugiyamaella lignohabitans 30035839 AWJ20_3781 CDS AWJ20_3781 NC_031671.1 253907 254410 D Usp (universal stress protein) family protein 253907..254410 Sugiyamaella lignohabitans 30035840 AWJ20_3782 CDS RAD10 NC_031671.1 254505 255671 R Single-stranded DNA endonuclease (with Rad1p); cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human ERCC1 protein; GO_component: GO:0000110 - nucleotide-excision repair factor 1 complex [Evidence IPI] [PMID 8621533]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852079]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 1741062]; GO_function: GO:0000014 - single-stranded DNA endodeoxyribonuclease activity [Evidence IDA] [PMID 8253764]; GO_process: GO:0006277 - DNA amplification [Evidence IMP] [PMID 23271978]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0000733 - DNA strand renaturation [Evidence IDA] [PMID 1741062]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000736 - double-strand break repair via single-strand annealing, removal of nonhomologous ends [Evidence IMP] [PMID 7891718]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 11514439]; GO_process: GO:0006312 - mitotic recombination [Evidence IMP] [PMID 2188090]; GO_process: GO:0006296 - nucleotide-excision repair, DNA incision, 5'-to lesion [Evidence IDA] [PMID 7559571]; GO_process: GO:0000735 - removal of nonhomologous ends [Evidence IMP] [PMID 7891718]; Rad10p complement(254505..255671) Sugiyamaella lignohabitans 30035841 AWJ20_3783 CDS AWJ20_3783 NC_031671.1 258775 259539 D uncharacterized protein 258775..259539 Sugiyamaella lignohabitans 30035842 AWJ20_3784 CDS DTD1 NC_031671.1 261086 261400 R D-Tyr-tRNA(Tyr) deacylase; functions in protein translation, may affect nonsense suppression via alteration of the protein synthesis machinery; ubiquitous among eukaryotes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0097358 - D-leucyl-tRNA(Leu) deacylase activity [Evidence IMP] [PMID 10918062]; GO_function: GO:0051500 - D-tyrosyl-tRNA(Tyr) deacylase activity [Evidence IMP] [PMID 10766779]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_process: GO:0019478 - D-amino acid catabolic process [Evidence IEA]; GO_process: GO:1900832 - D-leucine catabolic process [Evidence IMP] [PMID 10918062]; GO_process: GO:1900829 - D-tyrosine catabolic process [Evidence IMP] [PMID 10918062]; GO_process: GO:0006399 - tRNA metabolic process [Evidence IMP] [PMID 10918062]; Dtd1p complement(261086..261400) Sugiyamaella lignohabitans 30035843 AWJ20_3785 CDS pof10 NC_031671.1 262458 265166 D F-box protein Pof10 262458..265166 Sugiyamaella lignohabitans 30035844 AWJ20_3786 CDS AWJ20_3786 NC_031671.1 265219 267531 R uncharacterized protein complement(265219..267531) Sugiyamaella lignohabitans 30035845 AWJ20_3787 CDS AWJ20_3787 NC_031671.1 267669 269339 R uncharacterized protein complement(267669..269339) Sugiyamaella lignohabitans 30035846 AWJ20_3788 CDS GPR1 NC_031671.1 274120 275625 D Plasma membrane G protein coupled receptor (GPCR); interacts with the heterotrimeric G protein alpha subunit, Gpa2p, and with Plc1p; sensor that integrates nutritional signals with the modulation of cell fate via PKA and cAMP synthesis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10655215]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9388468]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9524122]; GO_function: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO_function: GO:0004930 - G-protein coupled receptor activity [Evidence IPI] [PMID 9388468]; GO_function: GO:0004930 - G-protein coupled receptor activity [Evidence IMP,IPI,ISS] [PMID 9524122]; GO_function: GO:0005536 - glucose binding [Evidence IMP] [PMID 15494315]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IEA]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IPI] [PMID 9388468]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IMP,IPI] [PMID 9524122]; GO_process: GO:0051594 - detection of glucose [Evidence IMP] [PMID 15494315]; GO_process: GO:0009731 - detection of sucrose stimulus [Evidence IMP] [PMID 15494315]; GO_process: GO:0010255 - glucose mediated signaling pathway [Evidence IGI,IMP] [PMID 10361302]; GO_process: GO:0010255 - glucose mediated signaling pathway [Evidence IMP] [PMID 15494315]; GO_process: GO:0010255 - glucose mediated signaling pathway [Evidence IMP] [PMID 9813141]; GO_process: GO:0009757 - hexose mediated signaling [Evidence IMP] [PMID 10655215]; GO_process: GO:0009757 - hexose mediated signaling [Evidence IGI,IMP] [PMID 9813141]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 12150916]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 10655215]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 15722108]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0009745 - sucrose mediated signaling [Evidence IMP] [PMID 15494315]; Gpr1p 274120..275625 Sugiyamaella lignohabitans 30035847 AWJ20_3789 CDS RKM5 NC_031671.1 275748 276599 R Protein lysine methyltransferase; monomethylates Lys-46 of the ribosomal large subunit Rpl1a/Rpl1b; member of the seven beta-strand methyltransferase superfamily; orthologs only found among fungal species; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISM] [PMID 19351663]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA] [PMID 21460220]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006479 - protein methylation [Evidence IDA] [PMID 21460220]; Rkm5p complement(275748..276599) Sugiyamaella lignohabitans 30035848 AWJ20_3790 CDS HOM2 NC_031671.1 276882 277388 R Aspartic beta semi-aldehyde dehydrogenase; catalyzes the second step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IDA] [PMID 4145650]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_process: GO:0006531 - aspartate metabolic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0009090 - homoserine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA]; GO_process: GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA,IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IMP] [PMID 4380684]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IMP] [PMID 4380684]; aspartate-semialdehyde dehydrogenase complement(276882..277388) Sugiyamaella lignohabitans 30035850 AWJ20_3791 CDS HOS4 NC_031671.1 278542 281805 D Subunit of the Set3 complex; complex is a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity; potential Cdc28p substrate; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IPI] [PMID 11711434]; Hos4p 278542..281805 Sugiyamaella lignohabitans 30035851 AWJ20_3792 CDS AWJ20_3792 NC_031671.1 282424 283662 R uncharacterized protein complement(282424..283662) Sugiyamaella lignohabitans 30035852 AWJ20_3793 CDS FBP26 NC_031671.1 287753 288880 D Fructose-2,6-bisphosphatase, required for glucose metabolism; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IKR] [PMID 9032445]; GO_function: GO:0003873 - 6-phosphofructo-2-kinase activity [Evidence IKR] [PMID 9032446]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004331 - fructose-2,6-bisphosphate 2-phosphatase activity [Evidence IMP] [PMID 1322693]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0006003 - fructose 2,6-bisphosphate metabolic process [Evidence IEA]; GO_process: GO:0006000 - fructose metabolic process [Evidence IEA]; GO_process: GO:0006006 - glucose metabolic process [Evidence IMP] [PMID 1322693]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Fbp26p 287753..288880 Sugiyamaella lignohabitans 30035853 AWJ20_3794 CDS SRS2 NC_031671.1 289346 291289 D DNA helicase SRS2 289346..291289 Sugiyamaella lignohabitans 30035854 AWJ20_3795 CDS AWJ20_3795 NC_031671.1 291885 292643 R uncharacterized protein complement(291885..292643) Sugiyamaella lignohabitans 30035855 AWJ20_3796 CDS STL1 NC_031671.1 293054 294529 R glucose-inactivated glycerol proton symporter STL1 complement(293054..294529) Sugiyamaella lignohabitans 30035856 AWJ20_3797 CDS MPS1 NC_031671.1 296215 298728 D serine/threonine/tyrosine protein kinase MPS1 296215..298728 Sugiyamaella lignohabitans 30035857 AWJ20_3798 CDS RAS2 NC_031671.1 302689 303480 D GTP-binding protein; regulates nitrogen starvation response, sporulation, and filamentous growth; farnesylation and palmitoylation required for activity and localization to plasma membrane; homolog of mammalian Ras proto-oncogenes; RAS2 has a paralog, RAS1, that arose from the whole genome duplication; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 22575457]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 22575457]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23127800]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11914276]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 20162532]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23127800]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 6438624]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 8106517]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0007190 - activation of adenylate cyclase activity [Evidence IDA] [PMID 8106517]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 2558958]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 2981630]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 3891097]; GO_process: GO:0000411 - positive regulation of transcription by galactose [Evidence IMP] [PMID 16292676]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IGI] [PMID 12782684]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 1547504]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 15917658]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 12839995]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 8034612]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Ras family GTPase RAS2 302689..303480 Sugiyamaella lignohabitans 30035858 AWJ20_3799 CDS YHK8 NC_031671.1 306722 308389 R Presumed antiporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; expression of gene is up-regulated in cells exhibiting reduced susceptibility to azoles; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9046086]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015893 - drug transport [Evidence IEP] [PMID 12697649]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Yhk8p complement(306722..308389) Sugiyamaella lignohabitans 30035859 AWJ20_3800 CDS ESS1 NC_031671.1 311367 311768 R Peptidylprolyl-cis/trans-isomerase (PPIase); specific for phosphorylated serine and threonine residues N-terminal to proline; regulates phosphorylation of the RNAP II large subunit (Rpo21p) C-terminal domain (CTD); associates with phospho-Ser5 form of RNAP II in vivo; regulates phosphorylation of Ser7 within CTD; present along entire coding length of genes; represses initiation of CUTs; required for efficient termination of mRNA transcription and trimethylation of histone H3; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 10531363]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 10899126]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 10899127]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 11708797]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 14704159]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 10531363]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 10899126]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA,IMP] [PMID 15728580]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 9867817]; GO_process: GO:0080182 - histone H3-K4 trimethylation [Evidence IGI,IMP] [PMID 22778132]; GO_process: GO:0031064 - negative regulation of histone deacetylation [Evidence IMP,IPI] [PMID 10899127]; GO_process: GO:2000059 - negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 19597489]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 14704159]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IGI] [PMID 15166139]; GO_process: GO:2000749 - positive regulation of chromatin silencing at rDNA [Evidence IMP] [PMID 10899127]; GO_process: GO:0035307 - positive regulation of protein dephosphorylation [Evidence IDA] [PMID 11904169]; GO_process: GO:0035307 - positive regulation of protein dephosphorylation [Evidence IMP] [PMID 19854134]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI,IPI] [PMID 10899126]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IDA,IMP] [PMID 15728580]; GO_process: GO:1901407 - regulation of phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 22778132]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 11708797]; GO_process: GO:0000117 - regulation of transcription involved in G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 11708797]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 14704159]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IGI,IMP] [PMID 19854134]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IMP] [PMID 22778132]; peptidylprolyl isomerase ESS1 complement(311367..311768) Sugiyamaella lignohabitans 30035862 AWJ20_3801 CDS AWJ20_3801 NC_031671.1 313836 314834 D uncharacterized protein 313836..314834 Sugiyamaella lignohabitans 30035863 AWJ20_3802 CDS AWJ20_3802 NC_031671.1 315717 316349 D uncharacterized protein 315717..316349 Sugiyamaella lignohabitans 30035864 AWJ20_3803 CDS AWJ20_3803 NC_031671.1 316646 319810 R uncharacterized protein complement(316646..319810) Sugiyamaella lignohabitans 30035865 AWJ20_3805 CDS AWJ20_3805 NC_031671.1 321912 323276 D uncharacterized protein 321912..323276 Sugiyamaella lignohabitans 30035867 AWJ20_3806 CDS AWJ20_3806 NC_031671.1 323630 324391 D uncharacterized protein 323630..324391 Sugiyamaella lignohabitans 30035868 AWJ20_3807 CDS CMP2 NC_031671.1 327407 329305 R Calcineurin A; one isoform (the other is Cna1p) of the catalytic subunit of calcineurin, a Ca++/calmodulin-regulated protein phosphatase which regulates Crz1p (a stress-response transcription factor), the other calcineurin subunit is CNB1; regulates the function of Aly1p alpha-arrestin; CMP2 has a paralog, CNA1, that arose from the whole genome duplication; GO_component: GO:0005955 - calcineurin complex [Evidence IPI] [PMID 10887154]; GO_component: GO:0005955 - calcineurin complex [Evidence IDA] [PMID 1321337]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004723 - calcium-dependent protein serine/threonine phosphatase activity [Evidence IDA] [PMID 1321337]; GO_function: GO:0005516 - calmodulin binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 1651503]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 8798496]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; calcineurin catalytic subunit A complement(327407..329305) Sugiyamaella lignohabitans 30035869 AWJ20_3808 CDS TSR2 NC_031671.1 330504 331115 D Protein with a potential role in pre-rRNA processing; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Tsr2p 330504..331115 Sugiyamaella lignohabitans 30035870 AWJ20_3809 CDS AWJ20_3809 NC_031671.1 331283 333655 R uncharacterized protein complement(331283..333655) Sugiyamaella lignohabitans 30035871 AWJ20_3811 CDS CDA1 NC_031671.1 334574 335491 D Chitin deacetylase; together with Cda2p involved in the biosynthesis ascospore wall component, chitosan; required for proper rigidity of the ascospore wall; GO_component: GO:0005631 - chitosan layer of spore wall [Evidence ISS] [PMID 8940152]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004099 - chitin deacetylase activity [Evidence IEA]; GO_function: GO:0004099 - chitin deacetylase activity [Evidence IDA,ISS] [PMID 8940152]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA,IMP] [PMID 8940152]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006032 - chitin catabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; chitin deacetylase CDA1 334574..335491 Sugiyamaella lignohabitans 30035874 AWJ20_3812 CDS TMT1 NC_031671.1 337686 339938 D Ubiquinone/menaquinone biosynthesis methyltransferase ubiE 337686..339938 Sugiyamaella lignohabitans 30035875 AWJ20_3813 CDS AWJ20_3813 NC_031671.1 341366 342292 D uncharacterized protein 341366..342292 Sugiyamaella lignohabitans 30035876 AWJ20_3814 CDS CCC2 NC_031671.1 342657 344816 D Cu(+2)-transporting P-type ATPase; required for export of copper from the cytosol into an extracytosolic compartment; has similarity to human proteins involved in Menkes and Wilsons diseases; protein abundance increases in response to DNA replication stress; affects TBSV model (+)RNA virus replication by regulating copper metabolism; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0012510 - trans-Golgi network transport vesicle membrane [Evidence IDA] [PMID 9325307]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IDA] [PMID 15078884]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IMP] [PMID 7708696]; GO_function: GO:0005507 - copper ion binding [Evidence IEA]; GO_function: GO:0005507 - copper ion binding [Evidence IDA] [PMID 17961510]; GO_function: GO:0043682 - copper-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 7708696]; GO_process: GO:0060003 - copper ion export [Evidence IMP] [PMID 7708696]; GO_process: GO:0006825 - copper ion transport [Evidence IEA,IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0030001 - metal ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 7708696]; GO_process: GO:0006810 - transport [Evidence IEA]; Cu(2+)-transporting P-type ATPase CCC2 342657..344816 Sugiyamaella lignohabitans 30035877 AWJ20_3815 CDS GPM1 NC_031671.1 345007 345756 R Tetrameric phosphoglycerate mutase; mediates the conversion of 3-phosphoglycerate to 2-phosphoglycerate during glycolysis and the reverse reaction during gluconeogenesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 3332961]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016868 - intramolecular transferase activity, phosphotransferases [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0004619 - phosphoglycerate mutase activity [Evidence IEA]; GO_function: GO:0004619 - phosphoglycerate mutase activity [Evidence IDA] [PMID 1386023]; GO_function: GO:0004619 - phosphoglycerate mutase activity [Evidence IMP] [PMID 3033435]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 3033435]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 11015729]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; phosphoglycerate mutase GPM1 complement(345007..345756) Sugiyamaella lignohabitans 30035878 AWJ20_3816 CDS YPT1 NC_031671.1 349711 350178 D Rab family GTPase; involved in the ER-to-Golgi step of the secretory pathway; complex formation with the Rab escort protein Mrs6p is required for prenylation of Ypt1p by protein geranylgeranyltransferase type II (Bet2p-Bet4p); binds to unspliced HAC1 mRNA; regulates unfolded protein response (UPR) by promoting the decay of HAC1 RNA; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 10747087]; GO_component: GO:0005795 - Golgi stack [Evidence IDA] [PMID 12802060]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IDA] [PMID 23129774]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10747087]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 20375281]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 20059749]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 3311726]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 9447979]; GO_function: GO:0000149 - SNARE binding [Evidence IDA,IPI] [PMID 18388317]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0090114 - COPII-coated vesicle budding [Evidence IMP] [PMID 15689495]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20375281]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 15689495]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 2504726]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 7593181]; GO_process: GO:0048194 - Golgi vesicle budding [Evidence IGI] [PMID 18388317]; GO_process: GO:0048211 - Golgi vesicle docking [Evidence IMP] [PMID 9545229]; GO_process: GO:0035494 - SNARE complex disassembly [Evidence IMP] [PMID 9157884]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IMP] [PMID 20059749]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 20059749]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20375281]; GO_process: GO:1990261 - pre-mRNA catabolic process [Evidence IMP] [PMID 22844259]; GO_process: GO:0006461 - protein complex assembly [Evidence IDA] [PMID 8603910]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:1900101 - regulation of endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 22844259]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IGI,IMP] [PMID 18388317]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Rab family GTPase YPT1 349711..350178 Sugiyamaella lignohabitans 30035879 AWJ20_3817 CDS PUF6 NC_031671.1 350571 352538 D Pumilio-homology domain protein; binds the 3' UTR of ASH1 mRNA and represses its translation, resulting in proper asymmetric localization of ASH1 mRNA; required at post-transcriptional step for efficient retrotransposition; absence results in decreased Ty1 Gag:GFP protein levels; co-sediments with the 60S ribosomal subunit and is required for its biogenesis; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IDA] [PMID 19806183]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003730 - mRNA 3'-UTR binding [Evidence IDA] [PMID 15198983]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000900 - translation repressor activity, nucleic acid binding [Evidence IDA] [PMID 15198983]; GO_process: GO:0017148 - negative regulation of translation [Evidence IDA] [PMID 15198983]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0006810 - transport [Evidence IEA]; Puf6p 350571..352538 Sugiyamaella lignohabitans 30035880 AWJ20_3818 CDS HAP3 NC_031671.1 352859 353602 R Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex; complex is heme-activated and glucose-repressed; complex is a transcriptional activator and global regulator of respiratory gene expression; contains sequences contributing to both complex assembly and DNA binding; GO_component: GO:0016602 - CCAAT-binding factor complex [Evidence IDA,IPI] [PMID 2832951]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 7828851]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 2832951]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 2832951]; GO_process: GO:0043457 - regulation of cellular respiration [Evidence IMP] [PMID 2182199]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hap3p complement(352859..353602) Sugiyamaella lignohabitans 30035881 AWJ20_3819 CDS AWJ20_3819 NC_031671.1 354966 356045 R uncharacterized protein complement(354966..356045) Sugiyamaella lignohabitans 30035882 AWJ20_3820 CDS VPS3 NC_031671.1 357300 360764 D CORVET complex subunit VPS3 357300..360764 Sugiyamaella lignohabitans 30035884 AWJ20_3821 CDS AWJ20_3821 NC_031671.1 360932 361576 R uncharacterized protein complement(360932..361576) Sugiyamaella lignohabitans 30035885 AWJ20_3822 CDS PRP18 NC_031671.1 362367 363341 D Splicing factor and component of snRNP U5; factor involved in the positioning of the 3' splice site during the second catalytic step of splicing; interacts with Slu7p; GO_component: GO:0071021 - U2-type post-spliceosomal complex [Evidence IDA] [PMID 12212850]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 8474454]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 8474454]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA,IEA]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IDA] [PMID 12212850]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IGI] [PMID 17626844]; GO_process: GO:0008380 - RNA splicing [Evidence IEA,IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IDA] [PMID 12212850]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 12403466]; GO_process: GO:0071048 - nuclear retention of unspliced pre-mRNA at the site of transcription [Evidence IGI,IMP] [PMID 14718167]; Prp18p 362367..363341 Sugiyamaella lignohabitans 30035886 AWJ20_3823 CDS SGT1 NC_031671.1 363718 364554 R Cochaperone protein; regulates activity of adenylyl cyclase Cyr1p; involved in kinetochore complex assembly; associates with the SCF (Skp1p/Cdc53p/F box protein) ubiquitin ligase complex; acts as a linker between Skp1p and HSP90 complexes; protein abundance increases in response to DNA replication stress; GO_component: GO:0000151 - ubiquitin ligase complex [Evidence IDA] [PMID 10445024]; GO_function: GO:0051087 - chaperone binding [Evidence ISS] [PMID 12456005]; GO_function: GO:0051087 - chaperone binding [Evidence IDA] [PMID 16945921]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 16945921]; GO_process: GO:0019933 - cAMP-mediated signaling [Evidence IGI,IPI] [PMID 12456005]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051382 - kinetochore assembly [Evidence IDA] [PMID 10445024]; GO_process: GO:0006461 - protein complex assembly [Evidence IGI,ISS] [PMID 12456005]; GO_process: GO:0006461 - protein complex assembly [Evidence IDA] [PMID 15090617]; GO_process: GO:0016567 - protein ubiquitination [Evidence TAS] [PMID 12456005]; GO_process: GO:0051726 - regulation of cell cycle [Evidence TAS] [PMID 11847307]; Sgt1p complement(363718..364554) Sugiyamaella lignohabitans 30035887 AWJ20_3824 CDS NOB1 NC_031671.1 365586 367052 D Protein involved in proteasomal and 40S ribosomal subunit biogenesis; required for cleavage of the 20S pre-rRNA to generate the mature 18S rRNA; cleavage is activated by Fun12p, a GTPase and translation initiation factor; relocalizes from nucleus to nucleolus upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12588997]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12502737]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12588997]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 12588997]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 19801658]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0070181 - small ribosomal subunit rRNA binding [Evidence IDA] [PMID 19706509]; GO_process: GO:0030490 - maturation of SSU-rRNA [Evidence IDA] [PMID 19801658]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEP,IMP] [PMID 12588997]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15388878]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP,IPI] [PMID 12502737]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IDA] [PMID 12588997]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IPI] [PMID 12628929]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nob1p 365586..367052 Sugiyamaella lignohabitans 30035888 AWJ20_3825 CDS RSR1 NC_031671.1 371591 372541 D GTP-binding protein of the Ras superfamily; required for bud site selection, morphological changes in response to mating pheromone, and efficient cell fusion; localized to the plasma membrane; significantly similar to mammalian Rap GTPases; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15282802]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8723349]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 1910037]; GO_function: GO:0003924 - GTPase activity [Evidence TAS] [PMID 9759491]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence TAS] [PMID 9891811]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence TAS] [PMID 2065354]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence TAS] [PMID 2690082]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 2065354]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 2690082]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence TAS] [PMID 9759491]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence TAS] [PMID 9891811]; Ras family GTPase RSR1 371591..372541 Sugiyamaella lignohabitans 30035889 AWJ20_3826 CDS AWJ20_3826 NC_031671.1 373013 374818 R methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor complement(373013..374818) Sugiyamaella lignohabitans 30035890 AWJ20_3827 CDS AWJ20_3827 NC_031671.1 375670 376845 D Fungal Genetics Stock Center 12071; isovaleryl-CoA dehydrogenase, mitochondrial precursor 375670..376845 Sugiyamaella lignohabitans 30035891 AWJ20_3828 CDS OSH2 NC_031671.1 380125 383535 D Member of an oxysterol-binding protein family with seven members; in S. cerevisiae, family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability; OSH2 has a paralog, SWH1, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11408574]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 20008566]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 12727870]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11408574]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence ISS] [PMID 11238399]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20008566]; GO_function: GO:0008142 - oxysterol binding [Evidence ISS] [PMID 11238399]; GO_function: GO:0015248 - sterol transporter activity [Evidence IDA] [PMID 20008566]; GO_process: GO:0035621 - ER to Golgi ceramide transport [Evidence IMP] [PMID 24213531]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 15173322]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17004323]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IGI] [PMID 17004323]; GO_process: GO:0015918 - sterol transport [Evidence IGI] [PMID 16585271]; GO_process: GO:0015918 - sterol transport [Evidence IDA] [PMID 20008566]; GO_process: GO:0006810 - transport [Evidence IEA]; oxysterol-binding protein related protein OSH2 380125..383535 Sugiyamaella lignohabitans 30035892 AWJ20_3829 CDS MEP3 NC_031671.1 387080 388555 D Ammonium permease of high capacity and low affinity; belongs to a ubiquitous family of cytoplasmic membrane proteins that transport only ammonium (NH4+); expression is under the nitrogen catabolite repression regulation ammonia permease; MEP3 has a paralog, MEP1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence TAS] [PMID 11486013]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 9234685]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]; GO_function: GO:0008519 - ammonium transmembrane transporter activity [Evidence IDA,IMP,ISS] [PMID 9234685]; GO_process: GO:0072488 - ammonium transmembrane transport [Evidence IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IEA,IEA]; GO_process: GO:0015696 - ammonium transport [Evidence IMP,ISS] [PMID 9234685]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 9234685]; GO_process: GO:0006810 - transport [Evidence IEA]; ammonium permease MEP3 387080..388555 Sugiyamaella lignohabitans 30035893 AWJ20_3830 CDS csn2 NC_031671.1 389005 390252 R COP9/signalosome complex subunit Csn2 complement(389005..390252) Sugiyamaella lignohabitans 30035895 AWJ20_3831 CDS NAM2 NC_031671.1 391496 394201 R Mitochondrial leucyl-tRNA synthetase; also has a direct role in splicing of several mitochondrial group I introns; indirectly required for mitochondrial genome maintenance; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 1990003]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004823 - leucine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004823 - leucine-tRNA ligase activity [Evidence IDA] [PMID 1990003]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IPI] [PMID 11142386]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0000372 - Group I intron splicing [Evidence IMP] [PMID 12486008]; GO_process: GO:0000372 - Group I intron splicing [Evidence IMP] [PMID 2277640]; GO_process: GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006429 - leucyl-tRNA aminoacylation [Evidence IDA] [PMID 1990003]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI] [PMID 16777356]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; leucine--tRNA ligase NAM2 complement(391496..394201) Sugiyamaella lignohabitans 30035896 AWJ20_3832 CDS NHX1 NC_031671.1 396173 397399 D Na+/H+ and K+/H+ exchanger; required for intracellular sequestration of Na+ and K+; located in the vacuole and late endosome compartments; required for osmotolerance to acute hypertonic shock and for vacuolar fusion; ortholog of human NHE9, which is linked to autism; GO_component: GO:0005769 - early endosome [Evidence IDA] [PMID 22210050]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20826459]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 20709757]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 22210050]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 9694857]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 22210050]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0015386 - potassium:proton antiporter activity [Evidence IMP] [PMID 15635088]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IEA]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IMP] [PMID 10998367]; GO_function: GO:0015385 - sodium:proton antiporter activity [Evidence IMP] [PMID 15635088]; GO_function: GO:0015299 - solute:proton antiporter activity [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0030004 - cellular monovalent inorganic cation homeostasis [Evidence IMP] [PMID 10589731]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0071805 - potassium ion transmembrane transport [Evidence IMP] [PMID 15635088]; GO_process: GO:0006813 - potassium ion transport [Evidence IEA]; GO_process: GO:0006885 - regulation of pH [Evidence IEA]; GO_process: GO:0035725 - sodium ion transmembrane transport [Evidence IMP] [PMID 10998367]; GO_process: GO:0035725 - sodium ion transmembrane transport [Evidence IMP] [PMID 15635088]; GO_process: GO:0006814 - sodium ion transport [Evidence IEA,IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence IMP] [PMID 10589731]; bifunctional K:H/Na:H antiporter NHX1 396173..397399 Sugiyamaella lignohabitans 30035897 AWJ20_3833 CDS SMC6 NC_031671.1 399759 402416 D Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; homologous to S. pombe rad18; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IEA]; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IDA] [PMID 15738391]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11927594]; GO_component: GO:0035861 - site of double-strand break [Evidence IDA] [PMID 16892052]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IDA] [PMID 15738391]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 16793545]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 11927594]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15738391]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0051304 - chromosome separation [Evidence IMP] [PMID 15793567]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IEA]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 16892052]; GO_process: GO:0071139 - resolution of recombination intermediates [Evidence IMP] [PMID 20159973]; DNA repair protein SMC6 399759..402416 Sugiyamaella lignohabitans 30035898 AWJ20_3834 CDS SMC6 NC_031671.1 402676 403341 D Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; homologous to S. pombe rad18; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IEA]; GO_component: GO:0030915 - Smc5-Smc6 complex [Evidence IDA] [PMID 15738391]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11927594]; GO_component: GO:0035861 - site of double-strand break [Evidence IDA] [PMID 16892052]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IDA] [PMID 15738391]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 16793545]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 11927594]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15738391]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0051304 - chromosome separation [Evidence IMP] [PMID 15793567]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IEA]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 16892052]; GO_process: GO:0071139 - resolution of recombination intermediates [Evidence IMP] [PMID 20159973]; DNA repair protein SMC6 402676..403341 Sugiyamaella lignohabitans 30035899 AWJ20_3835 CDS USO1 NC_031671.1 403435 405690 R Essential protein involved in vesicle-mediated ER to Golgi transport; binds membranes and functions during vesicle docking to the Golgi; required for assembly of the ER-to-Golgi SNARE complex; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IDA] [PMID 17192843]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA,IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 17192843]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8603910]; GO_process: GO:0048211 - Golgi vesicle docking [Evidence IDA] [PMID 9545229]; GO_process: GO:0048193 - Golgi vesicle transport [Evidence IEA]; GO_process: GO:0035493 - SNARE complex assembly [Evidence IMP] [PMID 8603910]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IEA]; Uso1p complement(403435..405690) Sugiyamaella lignohabitans 30035900 AWJ20_3836 CDS USO1 NC_031671.1 405732 407753 R Essential protein involved in vesicle-mediated ER to Golgi transport; binds membranes and functions during vesicle docking to the Golgi; required for assembly of the ER-to-Golgi SNARE complex; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IDA] [PMID 17192843]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA,IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 17192843]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8603910]; GO_process: GO:0048211 - Golgi vesicle docking [Evidence IDA] [PMID 9545229]; GO_process: GO:0048193 - Golgi vesicle transport [Evidence IEA]; GO_process: GO:0035493 - SNARE complex assembly [Evidence IMP] [PMID 8603910]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IEA]; Uso1p complement(405732..407753) Sugiyamaella lignohabitans 30035901 AWJ20_3837 CDS AWJ20_3837 NC_031671.1 412571 414010 D uncharacterized protein 412571..414010 Sugiyamaella lignohabitans 30035902 AWJ20_3838 CDS UTP20 NC_031671.1 414180 420110 R Component of the small-subunit (SSU) processome; SSU processome is involved in the biogenesis of the 18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 17652137]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17652137]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17652137]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 17652137]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 17652137]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17652137]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp20p complement(414180..420110) Sugiyamaella lignohabitans 30035903 AWJ20_3839 CDS AWJ20_3839 NC_031671.1 420190 421350 R uncharacterized protein complement(420190..421350) Sugiyamaella lignohabitans 30035904 AWJ20_3840 CDS URA7 NC_031671.1 422530 424269 R Major CTP synthase isozyme (see also URA8); catalyzes the ATP-dependent transfer of the amide nitrogen from glutamine to UTP, forming CTP, the final step in de novo biosynthesis of pyrimidines; involved in phospholipid biosynthesis; capable of forming cytoplasmic filaments termed cytoophidium, especially during conditions of glucose depletion; URA7 has a paralog, URA8, that arose from the whole genome duplication; GO_component: GO:0097268 - cytoophidium [Evidence IDA] [PMID 20713603]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003883 - CTP synthase activity [Evidence IEA,IEA]; GO_function: GO:0003883 - CTP synthase activity [Evidence IMP,ISS] [PMID 1753946]; GO_function: GO:0003883 - CTP synthase activity [Evidence IDA] [PMID 8075080]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0044210 - 'de novo' CTP biosynthetic process [Evidence IEA]; GO_process: GO:0006241 - CTP biosynthetic process [Evidence IDA] [PMID 8075080]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 9668079]; GO_process: GO:0019856 - pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 1753946]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA,IEA]; CTP synthase URA7 complement(422530..424269) Sugiyamaella lignohabitans 30035906 AWJ20_3841 CDS AWJ20_3841 NC_031671.1 423019 423783 D uncharacterized protein 423019..423783 Sugiyamaella lignohabitans 30035907 AWJ20_3842 CDS YPR1 NC_031671.1 425685 426581 D NADPH-dependent aldo-keto reductase; reduces multiple substrates including 2-methylbutyraldehyde and D,L-glyceraldehyde, expression is induced by osmotic and oxidative stress; functionally redundant with other aldo-keto reductases; protein abundance increases in response to DNA replication stress; YPR1 has a paralog, GCY1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 19016485]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA,IMP] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; trifunctional aldehyde reductase/carbonyl reductase (NADPH)/glucose 1-dehydrogenase (NADP(+)) YPR1 425685..426581 Sugiyamaella lignohabitans 30035908 AWJ20_3843 CDS RMD1 NC_031671.1 427253 428629 D Cytoplasmic protein required for sporulation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Rmd1p 427253..428629 Sugiyamaella lignohabitans 30035909 AWJ20_3844 CDS AWJ20_3844 NC_031671.1 434804 436258 D uncharacterized protein 434804..436258 Sugiyamaella lignohabitans 30035910 AWJ20_3845 CDS CDC4 NC_031671.1 437248 439506 R F-box protein required for both the G1/S and G2/M phase transitions; modular substrate specificity factor which associates with core SCF (Cdc53p, Skp1p and Hrt1p/Rbx1p) to form the SCFCdc4 complex; SCFCdc4 acts as a ubiquitin-protein ligase directing ubiquitination of cyclin-dependent kinase (CDK) phosphorylated substrates, such as: Sic1p, Far1p, Cdc6p, Clb6p, and Cln3p; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346238]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 9346239]; GO_component: GO:0043224 - nuclear SCF ubiquitin ligase complex [Evidence IDA] [PMID 11080155]; GO_component: GO:0016363 - nuclear matrix [Evidence IDA] [PMID 2244914]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11080155]; GO_function: GO:0050815 - phosphoserine binding [Evidence IDA] [PMID 23314252]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_function: GO:0061630 - ubiquitin protein ligase activity [Evidence IDA] [PMID 9346238]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 9346239]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 10409741]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 10409741]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI] [PMID 7954792]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 328339]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346238]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 9346239]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; SCF ubiquitin ligase complex subunit CDC4 complement(437248..439506) Sugiyamaella lignohabitans 30035911 AWJ20_3846 CDS AWJ20_3846 NC_031671.1 442775 443782 D uncharacterized protein 442775..443782 Sugiyamaella lignohabitans 30035912 AWJ20_3847 CDS BXI1 NC_031671.1 447425 448225 D Protein involved in apoptosis; variously described as containing a BCL-2 homology (BH3) domain or as a member of the BAX inhibitor family; reported to promote apoptosis under some conditions and to inhibit it in others; localizes to ER and vacuole; may link the unfolded protein response to apoptosis via regulation of calcium-mediated signaling; translocates to mitochondria under apoptosis-inducing conditions in a process involving Mir1p and Cor1p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 21673967]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 21673659]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 21673967]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 21673659]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006915 - apoptotic process [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 21673659]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 21673967]; GO_process: GO:0019722 - calcium-mediated signaling [Evidence IMP] [PMID 21673967]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 21673967]; Bxi1p 447425..448225 Sugiyamaella lignohabitans 30035913 AWJ20_3848 CDS PHO11 NC_031671.1 448477 450570 R acid phosphatase PHO11 complement(448477..450570) Sugiyamaella lignohabitans 30035914 AWJ20_3849 CDS AWJ20_3849 NC_031671.1 451234 452847 R uncharacterized protein complement(451234..452847) Sugiyamaella lignohabitans 30035915 AWJ20_3850 CDS AWJ20_3850 NC_031671.1 453209 455224 R Peptide-N4-(N-acetyl-beta- glucosaminyl)asparagineamidase A complement(453209..455224) Sugiyamaella lignohabitans 30035917 AWJ20_3851 CDS URA3 NC_031671.1 455956 456753 D Orotidine-5'-phosphate (OMP) decarboxylase; catalyzes the sixth enzymatic step in the de novo biosynthesis of pyrimidines, converting OMP into uridine monophosphate (UMP); converts 5-FOA into 5-fluorouracil, a toxic compound; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18812321]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IDA] [PMID 2061334]; GO_function: GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IMP] [PMID 4550660]; GO_function: GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IMP] [PMID 5651325]; GO_process: GO:0044205 - 'de novo' UMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 5651325]; GO_process: GO:0006222 - UMP biosynthetic process [Evidence IDA] [PMID 2061334]; GO_process: GO:0006222 - UMP biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0006222 - UMP biosynthetic process [Evidence IMP] [PMID 5651325]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]; orotidine-5'-phosphate decarboxylase 455956..456753 Sugiyamaella lignohabitans 30035918 AWJ20_3852 CDS DBP3 NC_031671.1 458453 460072 R RNA-Dependent ATPase, member of DExD/H-box family; involved in cleavage of site A3 within the ITS1 spacer during rRNA processing; not essential for growth, but deletion causes severe slow-growth phenotype; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9032262]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22083961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 18975973]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000464 - endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9032262]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; RNA-dependent ATPase DBP3 complement(458453..460072) Sugiyamaella lignohabitans 30035919 AWJ20_3853 CDS ERO1 NC_031671.1 461851 463677 D Thiol oxidase required for oxidative protein folding in the ER; essential for maintaining proper redox balance in ER; feedback regulation of Ero1p occurs via reduction and oxidation of Ero1p regulatory bonds; reduced Pdi1p activates Ero1p by direct reduction of Ero1p regulatory bonds; depletion of thiol substrates and accumulation of oxidized Pdi1p results in inactivation of Ero1p by both Pdi1p-mediated oxidation and autonomous oxidation of Ero1p regulatory bonds; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9659914]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016671 - oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IMP] [PMID 10982384]; GO_function: GO:0016972 - thiol oxidase activity [Evidence IDA] [PMID 16407158]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IGI] [PMID 11584268]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 9659913]; Ero1p 461851..463677 Sugiyamaella lignohabitans 30035920 AWJ20_3854 CDS RRT12 NC_031671.1 464898 465311 R Probable subtilisin-family protease; role in formation of the dityrosine layer of spore walls; localizes to the spore wall and also the nuclear envelope and ER region in mature spores; GO_component: GO:0005619 - ascospore wall [Evidence IDA] [PMID 19779569]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 19779569]; GO_component: GO:0031160 - spore wall [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042802 - identical protein binding [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IBA,IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence ISS] [PMID 10592175]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 19779569]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IBA,IEA,IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Rrt12p complement(464898..465311) Sugiyamaella lignohabitans 30035921 AWJ20_3855 CDS RRD1 NC_031671.1 466442 467893 R Peptidyl-prolyl cis/trans-isomerase; activator of the phosphotyrosyl phosphatase activity of PP2A; involved in G1 phase progression, microtubule dynamics, bud morphogenesis and DNA repair; required for rapid reduction of Sgs1p levels in response to rapamycin; subunit of the Tap42p-Sit4p-Rrd1p complex; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15150670]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 21129186]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15150670]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 16380387]; GO_function: GO:0019211 - phosphatase activator activity [Evidence IEA]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IMP] [PMID 12952889]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15150670]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 9705277]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IPI] [PMID 11134337]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IMP] [PMID 11262194]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA]; GO_process: GO:0043618 - regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IMP,IPI] [PMID 21129186]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 10660069]; peptidylprolyl isomerase RRD1 complement(466442..467893) Sugiyamaella lignohabitans 30035922 AWJ20_3856 CDS NUP192 NC_031671.1 468646 473577 D Essential subunit of the inner ring of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport; homologous to human NUP205; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0044611 - nuclear pore inner ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0044615 - nuclear pore nuclear basket [Evidence IDA] [PMID 10428845]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 10428845]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006999 - nuclear pore organization [Evidence IMP] [PMID 10428845]; GO_process: GO:0006999 - nuclear pore organization [Evidence IMP] [PMID 11121302]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IC] [PMID 10684247]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nup192p 468646..473577 Sugiyamaella lignohabitans 30035923 AWJ20_3857 CDS NSP1 NC_031671.1 473749 476502 R FG-nucleoporin NSP1 complement(join(473749..475815,476488..476502)) Sugiyamaella lignohabitans 30035924 AWJ20_3858 CDS GCV2 NC_031671.1 477310 480333 D P subunit of the mitochondrial glycine decarboxylase complex; glycine decarboxylase is required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of 5,10-methylene-THF in the cytoplasm; GO_component: GO:0005960 - glycine cleavage complex [Evidence ISS] [PMID 8830251]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA,IEA]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IDA] [PMID 320197]; GO_function: GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IDA] [PMID 8830251]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_process: GO:0006546 - glycine catabolic process [Evidence IEA]; GO_process: GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEP,IMP] [PMID 8830251]; GO_process: GO:0006544 - glycine metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IGI] [PMID 10871621]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glycine decarboxylase subunit P 477310..480333 Sugiyamaella lignohabitans 30035925 AWJ20_3859 CDS TRM7 NC_031671.1 482919 483815 D 2'-O-ribose methyltransferase; methylates the 2'-O-ribose of tRNA-Phe, tRNA-Trp, and tRNA-Leu at positions C32 and N34 of the tRNA anticodon loop; crucial biological role likely modification of tRNA-Phe; interacts with Trm732p and Rtt10p in 2'-O-methylation of C32 and N34 substrate tRNAs, respectively; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11927565]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IEA]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IDA] [PMID 11927565]; GO_function: GO:0008175 - tRNA methyltransferase activity [Evidence IMP,ISS] [PMID 9917067]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0001510 - RNA methylation [Evidence IEA]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 11927565]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 11927565]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Trm7p 482919..483815 Sugiyamaella lignohabitans 30035926 AWJ20_3860 CDS KRS1 NC_031671.1 484050 485798 R Lysyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 330225]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IDA] [PMID 3888626]; GO_function: GO:0004824 - lysine-tRNA ligase activity [Evidence IMP] [PMID 7628447]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IDA] [PMID 3888626]; GO_process: GO:0006430 - lysyl-tRNA aminoacylation [Evidence IMP] [PMID 7628447]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; lysine--tRNA ligase KRS1 complement(484050..485798) Sugiyamaella lignohabitans 30035928 AWJ20_3861 CDS TFG2 NC_031671.1 486426 487697 D TFIIF (Transcription Factor II) middle subunit; involved in both transcription initiation and elongation of RNA polymerase II; homologous to human RAP30; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IEA]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 12242279]; GO_component: GO:0005674 - transcription factor TFIIF complex [Evidence IDA] [PMID 7995524]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000991 - core RNA polymerase II binding transcription factor activity [Evidence IDA] [PMID 14749386]; GO_function: GO:0001139 - core RNA polymerase II recruiting transcription factor activity [Evidence IC] [PMID 7995524]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 7995524]; GO_process: GO:0001111 - promoter clearance from RNA polymerase II promoter [Evidence IC] [PMID 7995524]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 18362165]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 1331084]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 18362165]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IMP] [PMID 15572698]; GO_process: GO:0001174 - transcriptional start site selection at RNA polymerase II promoter [Evidence IMP] [PMID 20033062]; transcription factor IIF subunit TFG2 486426..487697 Sugiyamaella lignohabitans 30035929 AWJ20_3862 CDS AWJ20_3862 NC_031671.1 490103 491218 D AraC family transcriptional regulator 490103..491218 Sugiyamaella lignohabitans 30035930 AWJ20_3863 CDS AWJ20_3863 NC_031671.1 491935 493533 D uncharacterized protein 491935..493533 Sugiyamaella lignohabitans 30035931 AWJ20_3864 CDS KIN3 NC_031671.1 494277 496028 D serine/threonine protein kinase KIN3 494277..496028 Sugiyamaella lignohabitans 30035932 AWJ20_3865 CDS ACT1 NC_031671.1 496266 497540 R Actin; structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 3967297]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 6365930]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 8163554]; GO_component: GO:0005884 - actin filament [Evidence IDA] [PMID 6217414]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 3967297]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 6365930]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 8163554]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 3967297]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 8163554]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 10911987]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IDA] [PMID 6217414]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IDA,IMP] [PMID 9732290]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA] [PMID 17118118]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence TAS] [PMID 10652251]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17287397]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 15024029]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IGI] [PMID 9864365]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence TAS] [PMID 10652251]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10911987]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence TAS] [PMID 10652251]; GO_process: GO:0009306 - protein secretion [Evidence IGI,IMP] [PMID 10793147]; GO_process: GO:0000011 - vacuole inheritance [Evidence IGI,IMP] [PMID 8978821]; GO_process: GO:0030050 - vesicle transport along actin filament [Evidence TAS] [PMID 10652251]; actin complement(496266..497540) Sugiyamaella lignohabitans 30035933 AWJ20_3866 CDS PRT1 NC_031671.1 498378 500636 D eIF3b subunit of the eukaryotic translation initiation factor 3 (eIF3); subunit of the core complex of eIF3; essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 9722586]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IDA] [PMID 17242201]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IEA,IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9660829]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9671501]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA,IPI,ISS] [PMID 7876188]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 9671501]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IEA]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence IMP] [PMID 3029094]; GO_process: GO:0006413 - translational initiation [Evidence IDA] [PMID 9671501]; Prt1p 498378..500636 Sugiyamaella lignohabitans 30035934 AWJ20_3867 CDS IMD4 NC_031671.1 504870 505979 R Inosine monophosphate dehydrogenase; catalyzes the rate-limiting step in the de novo synthesis of GTP; member of a four-gene family in S. cerevisiae, constitutively expressed; IMD4 has a paralog, IMD3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0003938 - IMP dehydrogenase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003938 - IMP dehydrogenase activity [Evidence ISS] [PMID 11003640]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006177 - GMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA]; IMP dehydrogenase IMD4 complement(504870..505979) Sugiyamaella lignohabitans 30035935 AWJ20_3868 CDS IMD4 NC_031671.1 506268 506783 R Inosine monophosphate dehydrogenase; catalyzes the rate-limiting step in the de novo synthesis of GTP; member of a four-gene family in S. cerevisiae, constitutively expressed; IMD4 has a paralog, IMD3, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_function: GO:0003938 - IMP dehydrogenase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003938 - IMP dehydrogenase activity [Evidence ISS] [PMID 11003640]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006177 - GMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA]; IMP dehydrogenase IMD4 complement(506268..506783) Sugiyamaella lignohabitans 30035936 AWJ20_3869 CDS PEP4 NC_031671.1 507742 508815 R proteinase A complement(507742..508815) Sugiyamaella lignohabitans 30035937 AWJ20_3870 CDS AWJ20_3870 NC_031671.1 512551 514062 R ser/thr/tyr protein kinase RAD53 complement(512551..514062) Sugiyamaella lignohabitans 30035939 AWJ20_3871 CDS AWJ20_3871 NC_031671.1 517514 519562 D uncharacterized protein join(517514..517627,518288..519562) Sugiyamaella lignohabitans 30035940 AWJ20_3872 CDS AWJ20_3872 NC_031671.1 518294 519583 R putative spidroin-1-like complement(518294..519583) Sugiyamaella lignohabitans 30035941 AWJ20_3873 CDS AWJ20_3873 NC_031671.1 521620 522333 R uncharacterized protein complement(521620..522333) Sugiyamaella lignohabitans 30035942 AWJ20_3874 CDS AWJ20_3874 NC_031671.1 521975 522265 D uncharacterized protein 521975..522265 Sugiyamaella lignohabitans 30035943 AWJ20_3875 CDS MPM1 NC_031671.1 525204 526226 D Mitochondrial intermembrane space hypothetical protein; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 11791739]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22993211]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11791739]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9874242]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mpm1p 525204..526226 Sugiyamaella lignohabitans 30035944 AWJ20_3876 CDS GLC8 NC_031671.1 527614 528468 D Regulatory subunit of protein phosphatase 1 (Glc7p); involved in glycogen metabolism and chromosome segregation; proposed to regulate Glc7p activity via conformational alteration; ortholog of the mammalian protein phosphatase inhibitor 2; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 12127071]; GO_function: GO:0004864 - protein phosphatase inhibitor activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 7565759]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence TAS] [PMID 9584086]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IEA]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IEA]; GO_process: GO:0043666 - regulation of phosphoprotein phosphatase activity [Evidence IEA]; GO_process: GO:0009966 - regulation of signal transduction [Evidence IEA]; Glc8p 527614..528468 Sugiyamaella lignohabitans 30035945 AWJ20_3877 CDS TUB2 NC_031671.1 531013 532137 D Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules; mutation in human ortholog is associated with congenital fibrosis of the extraocular muscles (CFEOM) with polymicrogyria; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005828 - kinetochore microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0005874 - microtubule [Evidence IEA,IEA]; GO_component: GO:0005880 - nuclear microtubule [Evidence IC] [PMID 9488492]; GO_component: GO:0043234 - protein complex [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9585415]; GO_component: GO:0045298 - tubulin complex [Evidence IDA,IPI] [PMID 9488492]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0045143 - homologous chromosome segregation [Evidence IC] [PMID 9488492]; GO_process: GO:0007017 - microtubule-based process [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IC] [PMID 9488492]; GO_process: GO:0030473 - nuclear migration along microtubule [Evidence IC] [PMID 9488492]; GO_process: GO:0051258 - protein polymerization [Evidence IEA]; GO_process: GO:0046677 - response to antibiotic [Evidence IEA]; beta-tubulin 531013..532137 Sugiyamaella lignohabitans 30035946 AWJ20_3878 CDS CCC1 NC_031671.1 540215 541075 D Putative vacuolar Fe2+/Mn2+ transporter; suppresses respiratory deficit of yfh1 mutants, which lack the ortholog of mammalian frataxin, by preventing mitochondrial iron accumulation; relative distribution to the vacuole decreases upon DNA replication stress; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8866476]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 11390404]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IMP] [PMID 11390404]; GO_function: GO:0005384 - manganese ion transmembrane transporter activity [Evidence IMP] [PMID 11390404]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IGI,IMP] [PMID 7941738]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IGI,IMP] [PMID 10713071]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IGI,IMP] [PMID 8866476]; GO_process: GO:0015684 - ferrous iron transport [Evidence IMP] [PMID 11390404]; GO_process: GO:0006828 - manganese ion transport [Evidence IMP] [PMID 11390404]; GO_process: GO:0006810 - transport [Evidence IEA]; Ccc1p 540215..541075 Sugiyamaella lignohabitans 30035947 AWJ20_3879 CDS AWJ20_3879 NC_031671.1 541768 546084 R uncharacterized protein complement(541768..546084) Sugiyamaella lignohabitans 30035948 AWJ20_3880 CDS MUP1 NC_031671.1 548349 550058 D High affinity methionine permease; integral membrane protein with 13 putative membrane-spanning regions; also involved in cysteine uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 8893857]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000102 - L-methionine secondary active transmembrane transporter activity [Evidence IDA] [PMID 8893857]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0042883 - cysteine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0044690 - methionine import [Evidence IGI,IMP] [PMID 8893857]; GO_process: GO:0015821 - methionine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0000101 - sulfur amino acid transport [Evidence IMP] [PMID 8893857]; GO_process: GO:0006810 - transport [Evidence IEA]; Mup1p 548349..550058 Sugiyamaella lignohabitans 30035950 AWJ20_3881 CDS AWJ20_3881 NC_031671.1 550308 552002 R uncharacterized protein complement(550308..552002) Sugiyamaella lignohabitans 30035951 AWJ20_3882 CDS ACT1 NC_031671.1 552510 553592 R Actin; structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 3967297]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 6365930]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 8163554]; GO_component: GO:0005884 - actin filament [Evidence IDA] [PMID 6217414]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 3967297]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 6365930]; GO_component: GO:0032432 - actin filament bundle [Evidence IDA] [PMID 8163554]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 3967297]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 8163554]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 10911987]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IDA] [PMID 6217414]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0000916 - actomyosin contractile ring contraction [Evidence IDA,IMP] [PMID 9732290]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IDA] [PMID 17118118]; GO_process: GO:0007119 - budding cell isotropic bud growth [Evidence TAS] [PMID 10652251]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17287397]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 15024029]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IGI] [PMID 9864365]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence TAS] [PMID 10652251]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10911987]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence TAS] [PMID 10652251]; GO_process: GO:0009306 - protein secretion [Evidence IGI,IMP] [PMID 10793147]; GO_process: GO:0000011 - vacuole inheritance [Evidence IGI,IMP] [PMID 8978821]; GO_process: GO:0030050 - vesicle transport along actin filament [Evidence TAS] [PMID 10652251]; actin complement(552510..553592) Sugiyamaella lignohabitans 30035952 AWJ20_3883 CDS AWJ20_3883 NC_031671.1 559176 559388 D uncharacterized protein 559176..559388 Sugiyamaella lignohabitans 30035953 AWJ20_3884 CDS PMC1 NC_031671.1 562802 566446 D Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions; prevents growth inhibition by activation of calcineurin in the presence of elevated concentrations of calcium; similar to mammalian PMCA1a; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 24124599]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 7507493]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IEA,IEA]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IMP] [PMID 10431803]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IGI] [PMID 7507493]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IMP] [PMID 15280017]; GO_process: GO:0006816 - calcium ion transport [Evidence IMP] [PMID 7507493]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IMP] [PMID 7507493]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 7507493]; GO_process: GO:0006810 - transport [Evidence IEA]; calcium-transporting ATPase PMC1 562802..566446 Sugiyamaella lignohabitans 30035954 AWJ20_3885 CDS AWJ20_3885 NC_031671.1 563746 564084 R uncharacterized protein complement(563746..564084) Sugiyamaella lignohabitans 30035955 AWJ20_3886 CDS AWJ20_3886 NC_031671.1 564754 565350 R uncharacterized protein complement(564754..565350) Sugiyamaella lignohabitans 30035956 AWJ20_3887 CDS YPS1 NC_031671.1 567989 569179 R Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; YPS1 has a paralog, MKC7, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA] [PMID 8389368]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0016485 - protein processing [Evidence IDA] [PMID 8626758]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps1p complement(567989..569179) Sugiyamaella lignohabitans 30035957 AWJ20_3889 CDS AWJ20_3889 NC_031671.1 570577 571596 R Putative dihydrokaempferol 4-reductase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence ISA] [PMID 19577617]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; carbonyl reductase (NADPH-dependent) complement(570577..571596) Sugiyamaella lignohabitans 30035959 AWJ20_3890 CDS ATG3 NC_031671.1 573547 574593 D E2-like enzyme; involved in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; plays a role in formation of Atg8p-phosphatidylethanolamine conjugates, which are involved in membrane dynamics during autophagy and Cvt; interaction with Atg8p is regulated by its acetylation by Esa1p (catalytic subunit of NuA4 histone acetyltransferase complex) while attenuation of Atg3 acetylation is mediated by histone deacetylase Rpd3p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11149920]; GO_function: GO:0019776 - Atg8 ligase activity [Evidence IMP,ISS] [PMID 11100732]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IMP] [PMID 11100732]; GO_process: GO:0006501 - C-terminal protein lipidation [Evidence IDA,IMP] [PMID 15277523]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 9023185]; GO_process: GO:0000045 - autophagic vacuole assembly [Evidence IMP] [PMID 11149920]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0044805 - late nucleophagy [Evidence IMP] [PMID 22768199]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 19793921]; GO_process: GO:0034727 - piecemeal microautophagy of nucleus [Evidence IMP] [PMID 18701704]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Atg3p 573547..574593 Sugiyamaella lignohabitans 30035961 AWJ20_3891 CDS PDS5 NC_031671.1 576039 579665 D Protein involved in sister chromatid condensation and cohesion; colocalizes with cohesin on chromosomes, may function as a protein-protein interaction scaffold; also required during meiosis; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 11062262]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0000798 - nuclear cohesin complex [Evidence IDA] [PMID 22901742]; GO_component: GO:0034990 - nuclear mitotic cohesin complex [Evidence IDA] [PMID 22912589]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0005198 - structural molecule activity [Evidence ISS] [PMID 11137006]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 11448778]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 19736318]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 15819623]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 11062262]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 11062262]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 14623866]; GO_process: GO:0007129 - synapsis [Evidence IMP] [PMID 19736318]; Pds5p 576039..579665 Sugiyamaella lignohabitans 30035962 AWJ20_3892 CDS RCO1 NC_031671.1 579889 580893 R Essential component of the Rpd3S histone deacetylase complex; interacts with Eaf3p; GO_component: GO:0032221 - Rpd3S complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0032221 - Rpd3S complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0000118 - histone deacetylase complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP] [PMID 16286007]; GO_process: GO:0060195 - negative regulation of antisense RNA transcription [Evidence IMP] [PMID 21248844]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 19417103]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI] [PMID 19948887]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; Rco1p complement(579889..580893) Sugiyamaella lignohabitans 30035963 AWJ20_3893 CDS MAP2 NC_031671.1 583659 585271 R Methionine aminopeptidase; catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IGI,ISA] [PMID 8618900]; GO_function: GO:0008235 - metalloexopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0070084 - protein initiator methionine removal [Evidence IEA]; GO_process: GO:0035551 - protein initiator methionine removal involved in protein maturation [Evidence IMP] [PMID 11811952]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Map2p complement(join(583659..584782,585259..585271)) Sugiyamaella lignohabitans 30035964 AWJ20_3894 CDS ARG7 NC_031671.1 597377 598729 D Mitochondrial ornithine acetyltransferase; catalyzes the fifth step in arginine biosynthesis; also possesses acetylglutamate synthase activity, regenerates acetylglutamate while forming ornithine; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 205532]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004042 - acetyl-CoA:L-glutamate N-acetyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004042 - acetyl-CoA:L-glutamate N-acetyltransferase activity [Evidence IDA,IGI] [PMID 9428669]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004358 - glutamate N-acetyltransferase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0004358 - glutamate N-acetyltransferase activity [Evidence IDA] [PMID 9428669]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA,IEA,IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence TAS] [PMID 12603335]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006592 - ornithine biosynthetic process [Evidence IDA] [PMID 9428669]; glutamate N-acetyltransferase 597377..598729 Sugiyamaella lignohabitans 30035965 AWJ20_3895 CDS AWJ20_3895 NC_031671.1 597652 598059 R Ecm40p complement(597652..598059) Sugiyamaella lignohabitans 30035966 AWJ20_3896 CDS AWJ20_3896 NC_031671.1 602256 604001 R uncharacterized protein complement(602256..604001) Sugiyamaella lignohabitans 30035967 AWJ20_3897 CDS SNU13 NC_031671.1 605282 605665 R RNA binding protein; part of U3 snoRNP involved in rRNA processing, part of U4/U6-U5 tri-snRNP involved in mRNA splicing, similar to human 15.5K protein; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 11081632]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA,IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP,ISS] [PMID 14730029]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 17332014]; GO_function: GO:0003723 - RNA binding [Evidence IPI] [PMID 17631273]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 11720284]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 14730029]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 14730029]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; RNA binding protein SNU13 complement(605282..605665) Sugiyamaella lignohabitans 30035968 AWJ20_3898 CDS AWJ20_3898 NC_031671.1 606664 608376 D uncharacterized protein 606664..608376 Sugiyamaella lignohabitans 30035969 AWJ20_3899 CDS APE1 NC_031671.1 613092 614648 D Vacuolar aminopeptidase yscI; zinc metalloproteinase that belongs to the peptidase family M18; often used as a marker protein in studies of autophagy and cytosol to vacuole targeting (CVT) pathway; protein increases in abundance and relative distribution to cytoplasmic foci increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 1400574]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IDA] [PMID 3882418]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence ISS] [PMID 2651436]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence ISS] [PMID 2689224]; Ape1p 613092..614648 Sugiyamaella lignohabitans 30035970 AWJ20_3900 CDS AMF1 NC_031671.1 614915 616768 R Putative paralog of ATR1; but not required for boron tolerance; member of the DHA2 family of drug:H+ antiporters; YOR378W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Amf1p complement(614915..616768) Sugiyamaella lignohabitans 30035973 AWJ20_3901 CDS DAL5 NC_031671.1 619297 620592 D Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]; allantoate permease 619297..620592 Sugiyamaella lignohabitans 30035974 AWJ20_3902 CDS PAT1 NC_031671.1 623341 626019 D Deadenylation-dependent mRNA-decapping factor; also required for faithful chromosome transmission, maintenance of rDNA locus stability, and protection of mRNA 3'-UTRs from trimming; associated with topoisomerase II; binds to mRNAs under glucose starvation, most often in the 3' UTR; functionally linked to Pab1p; forms cytoplasmic foci upon DNA replication stress; phosphorylation by PKA inhibits P body foci formation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23706738]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA,IMP] [PMID 12730603]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 23222640]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 10779343]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23706738]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 23706738]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IDA] [PMID 23222640]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IGI,IMP] [PMID 18981231]; GO_process: GO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA [Evidence IMP,IPI] [PMID 10913177]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IMP] [PMID 20832728]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0045947 - negative regulation of translational initiation [Evidence IDA,IMP] [PMID 20832728]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IMP] [PMID 10779343]; Pat1p 623341..626019 Sugiyamaella lignohabitans 30035975 AWJ20_3903 CDS ACP1 NC_031671.1 626975 627202 D Mitochondrial matrix acyl carrier protein; involved in biosynthesis of octanoate, which is a precursor to lipoic acid; activated by phosphopantetheinylation catalyzed by Ppt2p; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0000036 - ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process [Evidence ISS] [PMID 8394042]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0009107 - lipoate biosynthetic process [Evidence IMP] [PMID 9187370]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Acp1p 626975..627202 Sugiyamaella lignohabitans 30035976 AWJ20_3904 CDS PCS60 NC_031671.1 629147 630802 D Oxalyl-CoA synthetase; capable of catalyzing conversion of oxalate to oxalyl-CoA; catalyzes first step in pathway of oxalate degradation that functions to protect yeast from inhibitory effects of oxalate; peroxisomal protein that binds mRNA; localizes to both peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid; similar to E. coli long chain acyl-CoA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 8841414]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8841414]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0050203 - oxalate-CoA ligase activity [Evidence IDA,IMP] [PMID 24291261]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0033611 - oxalate catabolic process [Evidence IDA,IMP] [PMID 24291261]; Pcs60p 629147..630802 Sugiyamaella lignohabitans 30035977 AWJ20_3905 CDS DBP6 NC_031671.1 631041 632960 R Essential protein involved in ribosome biogenesis; putative ATP-dependent RNA helicase of the DEAD-box protein family; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9528757]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 15126390]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17145778]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 10322435]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9528757]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9528757]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Dbp6p complement(631041..632960) Sugiyamaella lignohabitans 30035978 AWJ20_3906 CDS MSS4 NC_031671.1 635645 637453 D Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 635645..637453 Sugiyamaella lignohabitans 30035979 AWJ20_3907 CDS POL90 NC_031671.1 655603 658500 R polyprotein of non-LTR retrotransposon Zorro 1 and repeat region-related DNA; polyprotein of L1-like non-LTR retrotransposon Zorro 1 complement(655603..658500) Sugiyamaella lignohabitans 30035980 AWJ20_3909 CDS AWJ20_3909 NC_031671.1 664264 665214 D uncharacterized protein 664264..665214 Sugiyamaella lignohabitans 30035982 AWJ20_3910 CDS NUP85 NC_031671.1 665497 668793 D Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport and NPC biogenesis and is involved in establishment of a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p; also plays roles in several processes that may require localization of genes or chromosomes at the nuclear periphery, including double-strand break repair, transcription and chromatin silencing; homologous to human NUP85 aka NUP75; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 22331846]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 8565072]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 8816998]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 8565072]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 8816998]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA] [PMID 15817685]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12730220]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 11071906]; GO_process: GO:0006810 - transport [Evidence IEA]; Nup85p 665497..668793 Sugiyamaella lignohabitans 30035984 AWJ20_3911 CDS AWJ20_3911 NC_031671.1 670651 672309 D uncharacterized protein 670651..672309 Sugiyamaella lignohabitans 30035985 AWJ20_3912 CDS AWJ20_3912 NC_031671.1 672479 673576 R uncharacterized protein complement(672479..673576) Sugiyamaella lignohabitans 30035986 AWJ20_3913 CDS ESA1 NC_031671.1 673943 675442 D Catalytic subunit of the histone acetyltransferase complex (NuA4); acetylates four conserved internal lysines of histone H4 N-terminal tail and can acetylate histone H2A; required for cell cycle progression and transcriptional silencing at the rDNA locus and regulation of autophagy; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 10487762]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 10911987]; GO_component: GO:0035267 - NuA4 histone acetyltransferase complex [Evidence IPI] [PMID 15485911]; GO_component: GO:0032777 - Piccolo NuA4 histone acetyltransferase complex [Evidence IDA] [PMID 12782659]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 10911987]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence IDA] [PMID 10911987]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0010485 - H4 histone acetyltransferase activity [Evidence IDA] [PMID 12110674]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IEA]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 10487762]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA] [PMID 17274630]; GO_function: GO:0034212 - peptide N-acetyltransferase activity [Evidence IMP] [PMID 23050233]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 12353039]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 16135807]; GO_process: GO:0006354 - DNA-templated transcription, elongation [Evidence IDA,IMP] [PMID 15949446]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IGI,IMP] [PMID 16436512]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10082517]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 10487762]; GO_process: GO:0018394 - peptidyl-lysine acetylation [Evidence IMP] [PMID 23050233]; GO_process: GO:0016239 - positive regulation of macroautophagy [Evidence IMP] [PMID 22539722]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 19822662]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 10082517]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 11867538]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11036083]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; NuA4 histone acetyltransferase complex catalytic subunit ESA1 673943..675442 Sugiyamaella lignohabitans 30035987 AWJ20_3914 CDS RRD2 NC_031671.1 675743 676891 R Peptidyl-prolyl cis/trans-isomerase; also activates the phosphotyrosyl phosphatase activity of protein phosphatase 2A (PP2A); regulates G1 phase progression, the osmoresponse, microtubule dynamics; subunit of the Tap42p-Pph21p-Rrd2p complex; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IDA] [PMID 17550305]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 16380387]; GO_function: GO:0019211 - phosphatase activator activity [Evidence IEA]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IGI,ISS] [PMID 10660069]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IMP] [PMID 12952889]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IMP] [PMID 11262194]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IGI,IMP] [PMID 10660069]; peptidylprolyl isomerase RRD2 complement(675743..676891) Sugiyamaella lignohabitans 30035988 AWJ20_3915 CDS ALG13 NC_031671.1 677182 677685 D Catalytic component of UDP-GlcNAc transferase; required for the second step of dolichyl-linked oligosaccharide synthesis; anchored to the ER membrane via interaction with Alg14p; similar to bacterial and human glycosyltransferases; protein abundance increases in response to DNA replication stress; GO_component: GO:0043541 - UDP-N-acetylglucosamine transferase complex [Evidence IPI] [PMID 16100110]; GO_component: GO:0043541 - UDP-N-acetylglucosamine transferase complex [Evidence IPI] [PMID 16100113]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16100110]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16100113]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0042406 - extrinsic component of endoplasmic reticulum membrane [Evidence IDA] [PMID 16100110]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0004577 - N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity [Evidence IEA]; GO_function: GO:0004577 - N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity [Evidence IMP,ISS] [PMID 15615718]; GO_function: GO:0004577 - N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity [Evidence IDA,IMP,ISS] [PMID 16100113]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006488 - dolichol-linked oligosaccharide biosynthetic process [Evidence IMP,ISS] [PMID 15615718]; GO_process: GO:0006488 - dolichol-linked oligosaccharide biosynthetic process [Evidence IDA,IMP,ISS] [PMID 16100113]; GO_process: GO:0030259 - lipid glycosylation [Evidence IEA]; N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase catalytic subunit ALG13 677182..677685 Sugiyamaella lignohabitans 30035989 AWJ20_3916 CDS ISA2 NC_031671.1 677907 678563 R Protein required for maturation of mitochondrial [4Fe-4S] proteins; functions in a complex with Isa1p and possibly Iba57p; localizes to the mitochondrial intermembrane space, overexpression of ISA2 suppresses grx5 mutations; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 10805735]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005506 - iron ion binding [Evidence IDA] [PMID 21987576]; GO_process: GO:0009102 - biotin biosynthetic process [Evidence IGI,IMP] [PMID 17259550]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IGI,IMP] [PMID 10805735]; Isa2p complement(677907..678563) Sugiyamaella lignohabitans 30035990 AWJ20_3917 CDS AWJ20_3917 NC_031671.1 679192 680208 D uncharacterized protein 679192..680208 Sugiyamaella lignohabitans 30035991 AWJ20_3918 CDS PHO8 NC_031671.1 682735 684348 R alkaline phosphatase PHO8 complement(682735..684348) Sugiyamaella lignohabitans 30035992 AWJ20_3919 CDS ARO8 NC_031671.1 685842 687503 R Aromatic aminotransferase I; expression is regulated by general control of amino acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IEA]; GO_function: GO:0047536 - 2-aminoadipate transaminase activity [Evidence IDA] [PMID 19342587]; GO_function: GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0008793 - aromatic-amino-acid:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0008793 - aromatic-amino-acid:2-oxoglutarate aminotransferase activity [Evidence IDA] [PMID 9491082]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO_process: GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]; GO_process: GO:0009072 - aromatic amino acid family metabolic process [Evidence IGI,IMP] [PMID 9491083]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0006571 - tyrosine biosynthetic process [Evidence IEA]; bifunctional 2-aminoadipate transaminase/aromatic-amino-acid:2-oxoglutarate transaminase complement(685842..687503) Sugiyamaella lignohabitans 30035993 AWJ20_3920 CDS AWJ20_3920 NC_031671.1 687566 687775 R uncharacterized protein complement(687566..687775) Sugiyamaella lignohabitans 30035995 AWJ20_3921 CDS ARL3 NC_031671.1 688549 689145 R ARF-like small GTPase of the RAS superfamily; required for recruitment of Arl1p, a GTPase that regulates membrane traffic, to the Golgi apparatus; NatC-catalyzed N-terminal acetylation regulates Golgi membrane association mediated by interaction with membrane receptor, Sys1p; similar to ADP-ribosylation factor and orthologous to mammalian ARFRP1; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15077113]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15077114]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 9920936]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA,ISS] [PMID 9920936]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 16926193]; GO_process: GO:0006886 - intracellular protein transport [Evidence IMP] [PMID 9920936]; GO_process: GO:0033365 - protein localization to organelle [Evidence IMP] [PMID 12620189]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Arf family GTPase ARL3 complement(688549..689145) Sugiyamaella lignohabitans 30035996 AWJ20_3922 CDS ADE1 NC_031671.1 690026 690946 D N-succinyl-5-aminoimidazole-4-carboxamide ribotide synthetase; required for 'de novo' purine nucleotide biosynthesis; red pigment accumulates in mutant cells deprived of adenine; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IEA,IEA]; GO_function: GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IDA] [PMID 1756975]; GO_function: GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IMP] [PMID 5767024]; GO_function: GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IMP] [PMID 5767025]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IDA] [PMID 1756975]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IMP] [PMID 5767024]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IMP] [PMID 5767025]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IDA] [PMID 1756975]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 5767024]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 5767025]; phosphoribosylaminoimidazolesuccinocarboxamide synthase 690026..690946 Sugiyamaella lignohabitans 30035997 AWJ20_3923 CDS PTC6 NC_031671.1 691740 693089 D Mitochondrial type 2C protein phosphatase (PP2C); has similarity to mammalian PP1Ks; involved in mitophagy; null mutant is sensitive to rapamycin and has decreased phosphorylation of the Pda1 subunit of pyruvate dehydrogenase; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 17166847]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 18180296]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0004741 - [pyruvate dehydrogenase (lipoamide)] phosphatase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA] [PMID 17002782]; GO_process: GO:0016236 - macroautophagy [Evidence IGI] [PMID 17166847]; GO_process: GO:0000422 - mitochondrion degradation [Evidence IMP] [PMID 17166847]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IMP] [PMID 18180296]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 18180296]; type 2C protein phosphatase PTC6 691740..693089 Sugiyamaella lignohabitans 30035998 AWJ20_3924 CDS POL90 NC_031671.1 702558 705455 R polyprotein of non-LTR retrotransposon Zorro 1 and repeat region-related DNA; polyprotein of L1-like non-LTR retrotransposon Zorro 1 complement(702558..705455) Sugiyamaella lignohabitans 30035999 AWJ20_3925 CDS AWJ20_3925 NC_031671.1 717614 718165 R uncharacterized protein complement(717614..718165) Sugiyamaella lignohabitans 30036000 AWJ20_3927 CDS AWJ20_3927 NC_031671.1 719248 719544 R uncharacterized protein complement(719248..719544) Sugiyamaella lignohabitans 30036002 AWJ20_3928 CDS AOH2 NC_031671.1 720516 724226 D xanthine dehydrogenase/oxidase 720516..724226 Sugiyamaella lignohabitans 30036003 AWJ20_3929 CDS SAY1 NC_031671.1 725372 726289 R Sterol deacetylase; component of the sterol acetylation/deacetylation cycle along with Atf2p; active both in the endoplasmic reticulum (ER) and in lipid droplets; integral membrane protein with active site in the ER lumen; green fluorescent protein (GFP)-fusion protein localizes to the ER; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 24868093]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 18034159]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 18034159]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0034084 - steryl deacetylase activity [Evidence IDA,IMP] [PMID 18034159]; GO_process: GO:0009636 - response to toxic substance [Evidence IMP] [PMID 18034159]; GO_process: GO:0034210 - sterol deacetylation [Evidence IMP] [PMID 18034159]; GO_process: GO:0016125 - sterol metabolic process [Evidence IMP] [PMID 18034159]; Say1p complement(725372..726289) Sugiyamaella lignohabitans 30036004 AWJ20_3930 CDS AWJ20_3930 NC_031671.1 728241 729293 D uncharacterized protein 728241..729293 Sugiyamaella lignohabitans 30036006 AWJ20_3931 CDS COQ6 NC_031671.1 729621 731246 D Putative flavin-dependent monooxygenase; involved in ubiquinone (Coenzyme Q) biosynthesis; localizes to the matrix face of the mitochondrial inner membrane in a large complex with other ubiquinone biosynthetic enzymes; human COX6 can rescue a yeast cox6 mutant and is implicated in steroid-resistant nephrotic syndrome (SRNS); GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 12721307]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence ISA] [PMID 12721307]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 21944752]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 9266513]; putative N,N-dimethylaniline monooxygenase COQ6 729621..731246 Sugiyamaella lignohabitans 30036007 AWJ20_3932 CDS AWJ20_3932 NC_031671.1 731869 733311 D uncharacterized protein 731869..733311 Sugiyamaella lignohabitans 30036008 AWJ20_3933 CDS AWJ20_3933 NC_031671.1 733458 734279 R uncharacterized protein complement(733458..734279) Sugiyamaella lignohabitans 30036009 AWJ20_3934 CDS TGL2 NC_031671.1 736051 737364 D Triacylglycerol lipase that is localized to the mitochondria; has lipolytic activity towards triacylglycerols and diacylglycerols when expressed in E. coli; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19959834]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IMP] [PMID 9544243]; GO_process: GO:0006505 - GPI anchor metabolic process [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IMP] [PMID 19959834]; Tgl2p 736051..737364 Sugiyamaella lignohabitans 30036010 AWJ20_3935 CDS ALD5 NC_031671.1 737539 738930 R Mitochondrial aldehyde dehydrogenase; involved in regulation or biosynthesis of electron transport chain components and acetate formation; activated by K+; utilizes NADP+ as the preferred coenzyme; constitutively expressed; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IDA] [PMID 9473035]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IMP] [PMID 15256563]; GO_process: GO:0006068 - ethanol catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldehyde dehydrogenase (NAD(P)(+)) ALD5 complement(737539..738930) Sugiyamaella lignohabitans 30036011 AWJ20_3936 CDS AWJ20_3936 NC_031671.1 740233 741807 D uncharacterized protein 740233..741807 Sugiyamaella lignohabitans 30036012 AWJ20_3937 CDS AWJ20_3937 NC_031671.1 742105 743130 R uncharacterized protein complement(742105..743130) Sugiyamaella lignohabitans 30036013 AWJ20_3938 CDS ORC1 NC_031671.1 746553 748787 D Largest subunit of the origin recognition complex; involved in directing DNA replication by binding to replication origins; also involved in transcriptional silencing; exhibits ATPase activity; ORC1 has a paralog, SIR3, that arose from the whole genome duplication; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005664 - nuclear origin of replication recognition complex [Evidence IDA,IMP] [PMID 9372948]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11168584]; GO_component: GO:0000808 - origin recognition complex [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 17825064]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 9038340]; GO_function: GO:0016887 - ATPase activity [Evidence IMP] [PMID 9038340]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11168584]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 16716188]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 12897051]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA,IGI] [PMID 16581798]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 9335335]; origin recognition complex subunit 1 746553..748787 Sugiyamaella lignohabitans 30036014 AWJ20_3939 CDS SEC14 NC_031671.1 748898 749689 R Phosphatidylinositol/phosphatidylcholine transfer protein; involved in regulating PtdIns, PtdCho, and ceramide metabolism, products of which regulate intracellular transport and UPR; has a role in localization of lipid raft proteins; functionally homologous to mammalian PITPs; SEC14 has a paralog, YKL091C, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 1997207]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 7816798]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 1997207]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12869188]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 2466847]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA,IMP] [PMID 10488334]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 2407740]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA,IMP] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA,IMP] [PMID 2215682]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA] [PMID 2407740]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 10848624]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 19129178]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IMP] [PMID 6754086]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IGI,IMP] [PMID 18753406]; GO_process: GO:0048194 - Golgi vesicle budding [Evidence IDA] [PMID 9553090]; GO_process: GO:0048194 - Golgi vesicle budding [Evidence IDA] [PMID 9736710]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 14528019]; GO_process: GO:2001246 - negative regulation of phosphatidylcholine biosynthetic process [Evidence IDA,IMP] [PMID 7816798]; GO_process: GO:1901352 - negative regulation of phosphatidylglycerol biosynthetic process [Evidence IMP] [PMID 12869188]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IGI,IMP] [PMID 10567405]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 10848624]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA,IMP] [PMID 2215682]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 2407740]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; phosphatidylinositol/phosphatidylcholine transfer protein SEC14 complement(748898..749689) Sugiyamaella lignohabitans 30036015 AWJ20_3940 CDS NUP84 NC_031671.1 751932 753830 D Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport and NPC biogenesis; also plays roles in several processes that may require localization of genes or chromosomes at the nuclear periphery, including double-strand break repair, transcription and chromatin silencing; homologous to human NUP107; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 11823431]; GO_component: GO:0031080 - nuclear pore outer ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 22331846]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12482937]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 21818277]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI] [PMID 15725626]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 16418532]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 17538013]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 8565072]; GO_process: GO:0031990 - mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 18258809]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0035392 - maintenance of chromatin silencing at telomere [Evidence IMP] [PMID 16418532]; GO_process: GO:0031081 - nuclear pore distribution [Evidence IMP] [PMID 8565072]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22110603]; GO_process: GO:0045893 - positive regulation of transcription, DNA-templated [Evidence IDA,IGI,IMP] [PMID 15817685]; GO_process: GO:0000973 - posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery [Evidence IMP] [PMID 20932479]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 12730220]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IMP] [PMID 16418532]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Nup84p 751932..753830 Sugiyamaella lignohabitans 30036017 AWJ20_3942 CDS TOP1 NC_031671.1 754376 756945 R Topoisomerase I; nuclear enzyme that relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone; relaxes both positively and negatively supercoiled DNA; functions in replication, transcription, and recombination; role in processing ribonucleoside monophosphates in genomic DNA into irreversible single-strand breaks; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IPI] [PMID 10967121]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 6088500]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IEA,IEA]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IMP] [PMID 2989818]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IDA] [PMID 6088500]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0031490 - chromatin DNA binding [Evidence IBA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 2549254]; GO_process: GO:0006265 - DNA topological change [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IMP] [PMID 2989818]; GO_process: GO:0006265 - DNA topological change [Evidence IDA] [PMID 6088500]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IMP] [PMID 9199287]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 10082585]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IGI,IMP] [PMID 8895658]; GO_process: GO:0007097 - nuclear migration [Evidence IGI,IMP] [PMID 8895658]; GO_process: GO:0000019 - regulation of mitotic recombination [Evidence IMP] [PMID 2902925]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 1660829]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 2840207]; DNA topoisomerase 1 complement(join(754376..756696,756882..756945)) Sugiyamaella lignohabitans 30036019 AWJ20_3943 CDS CBP3 NC_031671.1 757564 758625 R Mitochondrial protein required for assembly of cytochrome bc1 complex; forms a complex with Cbp6p that binds to mt ribosomes near the polypeptide tunnel exit and promotes efficient translation of the COB mRNA; Cbp3p-Cbp6p complex also interacts with newly synthesized cytochrome b (Cobp) and Cbp4p to promote assembly of Cobp into the cytochrome bc1 complex; Cbp3p-Cbp6p complex is sequestered if assembly of Complex III is blocked, downregulating COB mRNA translation; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23509072]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0032592 - integral component of mitochondrial membrane [Evidence IDA] [PMID 11522252]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005761 - mitochondrial ribosome [Evidence IDA] [PMID 21670217]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11522252]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0043022 - ribosome binding [Evidence IDA,IPI] [PMID 21670217]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 11522252]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 15759116]; GO_process: GO:0070131 - positive regulation of mitochondrial translation [Evidence IMP] [PMID 21670217]; Cbp3p complement(757564..758625) Sugiyamaella lignohabitans 30036020 AWJ20_3944 CDS EMC2 NC_031671.1 758904 759806 D Member of conserved ER transmembrane complex; required for efficient folding of proteins in the ER; null mutant displays induction of the unfolded protein response; homologous to worm Y57G7A.10/EMC-2, fly CG17556, human TTC35; GO_component: GO:0072546 - ER membrane protein complex [Evidence IDA] [PMID 19325107]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IGI] [PMID 19325107]; Emc2p 758904..759806 Sugiyamaella lignohabitans 30036021 AWJ20_3945 CDS TIP41 NC_031671.1 760023 760913 R Protein that interacts with Tap42p, which regulates PP2A; component of the TOR (target of rapamycin) signaling pathway; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IMP,IPI] [PMID 11741537]; Tip41p complement(760023..760913) Sugiyamaella lignohabitans 30036022 AWJ20_3946 CDS AWJ20_3946 NC_031671.1 765914 767086 R uncharacterized protein complement(765914..767086) Sugiyamaella lignohabitans 30036023 AWJ20_3947 CDS GOR1 NC_031671.1 769234 770232 D Glyoxylate reductase; null mutation results in increased biomass after diauxic shift; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0048037 - cofactor binding [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IEA]; GO_function: GO:0047964 - glyoxylate reductase activity [Evidence IMP] [PMID 17173333]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence ISS] [PMID 9341119]; GO_process: GO:0009436 - glyoxylate catabolic process [Evidence IMP] [PMID 17173333]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence ISS] [PMID 9341119]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Gor1p 769234..770232 Sugiyamaella lignohabitans 30036024 AWJ20_3948 CDS AWJ20_3948 NC_031671.1 770433 771488 R uncharacterized protein complement(770433..771488) Sugiyamaella lignohabitans 30036025 AWJ20_3949 CDS AWJ20_3949 NC_031671.1 776972 777658 R expressed protein; uncharacterized protein complement(776972..777658) Sugiyamaella lignohabitans 30036026 AWJ20_3950 CDS AWJ20_3950 NC_031671.1 781841 782137 D uncharacterized protein 781841..782137 Sugiyamaella lignohabitans 30036028 AWJ20_3951 CDS PBP1 NC_031671.1 783804 787265 D Component of glucose deprivation induced stress granules; involved in P-body-dependent granule assembly; similar to human ataxin-2; interacts with Pab1p to regulate mRNA polyadenylation; interacts with Mkt1p to regulate HO translation; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 15082763]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IGI,IMP,IPI] [PMID 9819425]; GO_process: GO:0045727 - positive regulation of translation [Evidence IMP,IPI] [PMID 15082763]; GO_process: GO:0034063 - stress granule assembly [Evidence IMP] [PMID 18981231]; Pbp1p 783804..787265 Sugiyamaella lignohabitans 30036029 AWJ20_3952 CDS AWJ20_3952 NC_031671.1 787754 789199 D uncharacterized protein 787754..789199 Sugiyamaella lignohabitans 30036030 AWJ20_3953 CDS RRN7 NC_031671.1 789406 791118 D Component of the core factor (CF) rDNA transcription factor complex; CF is required for transcription of 35S rRNA genes by RNA polymerase I and is composed of Rrn6p, Rrn7p, and Rrn11p; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 7958901]; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 8702872]; GO_component: GO:0070860 - RNA polymerase I core factor complex [Evidence IDA] [PMID 8887672]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22362748]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001164 - RNA polymerase I CORE element sequence-specific DNA binding [Evidence IDA] [PMID 18451108]; GO_function: GO:0001187 - RNA polymerase I CORE element sequence-specific DNA binding transcription factor recruiting transcription factor activity [Evidence IC]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA,IPI] [PMID 8702872]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006361 - transcription initiation from RNA polymerase I promoter [Evidence NAS] [PMID 7958901]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IDA,IMP] [PMID 7958901]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rrn7p 789406..791118 Sugiyamaella lignohabitans 30036031 AWJ20_3954 CDS CDC21 NC_031671.1 791308 792243 R Thymidylate synthase; required for de novo biosynthesis of pyrimidine deoxyribonucleotides; expression is induced at G1/S; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8132557]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0004799 - thymidylate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004799 - thymidylate synthase activity [Evidence IMP] [PMID 334734]; GO_function: GO:0004799 - thymidylate synthase activity [Evidence IDA] [PMID 6287238]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006231 - dTMP biosynthetic process [Evidence IEA]; GO_process: GO:0006231 - dTMP biosynthetic process [Evidence IMP] [PMID 334734]; GO_process: GO:0006231 - dTMP biosynthetic process [Evidence IMP] [PMID 794696]; GO_process: GO:0006235 - dTTP biosynthetic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA]; thymidylate synthase complement(791308..792243) Sugiyamaella lignohabitans 30036032 AWJ20_3956 CDS GIP3 NC_031671.1 798789 802895 D protein phosphatase regulator GIP3 join(798789..799029,799108..802895) Sugiyamaella lignohabitans 30036034 AWJ20_3957 CDS RPL5 NC_031671.1 803096 803986 R Ribosomal 60S subunit protein L5; homologous to mammalian ribosomal protein L5 and bacterial L18; binds 5S rRNA and is required for 60S subunit assembly; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA]; GO_function: GO:0008097 - 5S rRNA binding [Evidence IDA] [PMID 8764831]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 8474444]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L5 complement(803096..803986) Sugiyamaella lignohabitans 30036035 AWJ20_3958 CDS AWJ20_3958 NC_031671.1 807826 808116 R Putative glutamine amidotransferase; has Aft1p-binding motif in the promoter; may be involved in copper and iron homeostasis; YLR126C is not an essential protein; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IEP,ISS] [PMID 14534306]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEP,ISS] [PMID 14534306]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; putative amidotransferase complement(807826..808116) Sugiyamaella lignohabitans 30036036 AWJ20_3959 CDS AWJ20_3959 NC_031671.1 808285 808620 R amidotransferase (predicted) complement(808285..808620) Sugiyamaella lignohabitans 30036037 AWJ20_3960 CDS AWJ20_3960 NC_031671.1 809345 810463 R uncharacterized protein complement(809345..810463) Sugiyamaella lignohabitans 30036039 AWJ20_3961 CDS YKU70 NC_031671.1 811717 812742 R Subunit of the telomeric Ku complex (Yku70p-Yku80p); involved in telomere length maintenance, structure and telomere position effect; required for localization of telomerase ribonucleoprotein to nucleus via interaction with the TLC1 guide RNA; relocates to sites of double-strand cleavage to promote nonhomologous end joining during DSB repair; GO_component: GO:0043564 - Ku70:Ku80 complex [Evidence IEA]; GO_component: GO:0043564 - Ku70:Ku80 complex [Evidence IDA] [PMID 8754818]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence TAS] [PMID 10367891]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 10638763]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence TAS] [PMID 12080091]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12975323]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence TAS] [PMID 10367891]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IDA] [PMID 11553718]; GO_process: GO:0006342 - chromatin silencing [Evidence IDA,IMP] [PMID 9501103]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI,IMP] [PMID 18791224]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IGI,IMP] [PMID 17321803]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 11016833]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IMP] [PMID 10908335]; GO_process: GO:0097552 - mitochondrial double-strand break repair via homologous recombination [Evidence IMP] [PMID 22214610]; GO_process: GO:0000723 - telomere maintenance [Evidence IEA]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 10818099]; Yku70p complement(811717..812742) Sugiyamaella lignohabitans 30036040 AWJ20_3962 CDS AWJ20_3962 NC_031671.1 812890 813144 R ATP-dependent DNA helicase II subunit 1 complement(812890..813144) Sugiyamaella lignohabitans 30036041 AWJ20_3963 CDS POL2 NC_031671.1 814621 820464 D DNA polymerase epsilon catalytic subunit 814621..820464 Sugiyamaella lignohabitans 30036042 AWJ20_3964 CDS RAD14 NC_031671.1 820501 820794 R Protein that recognizes and binds damaged DNA during NER; subunit of Nucleotide Excision Repair Factor 1 (NEF1); contains zinc finger motif; homolog of human XPA protein; NER stands for nucleotide excision repair; GO_component: GO:0000110 - nucleotide-excision repair factor 1 complex [Evidence IPI] [PMID 8621533]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852079]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 23925126]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 8516285]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 8516285]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0000715 - nucleotide-excision repair, DNA damage recognition [Evidence IDA] [PMID 8516285]; Rad14p complement(820501..820794) Sugiyamaella lignohabitans 30036043 AWJ20_3965 CDS ORC5 NC_031671.1 822754 823404 D Subunit of the origin recognition complex (ORC); ORC directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005664 - nuclear origin of replication recognition complex [Evidence IDA,IMP] [PMID 9372948]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0000808 - origin recognition complex [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IMP] [PMID 9038340]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 16716188]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI,IMP] [PMID 7579692]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 12897051]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0031938 - regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16980387]; origin recognition complex subunit 5 822754..823404 Sugiyamaella lignohabitans 30036044 AWJ20_3966 CDS VPS27 NC_031671.1 823526 825286 R Endosomal protein that forms a complex with Hse1p; required for recycling Golgi proteins, forming lumenal membranes and sorting ubiquitinated proteins destined for degradation; has Ubiquitin Interaction Motifs which bind ubiquitin (Ubi4p); GO_component: GO:0033565 - ESCRT-0 complex [Evidence IPI] [PMID 12055639]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12055639]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 9702203]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 12055639]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 20150893]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 12055639]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP,IPI] [PMID 12055639]; ESCRT-0 subunit protein VPS27 complement(823526..825286) Sugiyamaella lignohabitans 30036045 AWJ20_3967 CDS IST1 NC_031671.1 825831 826754 D Protein with positive role in the multivesicular body sorting pathway; functions and forms a complex with Did2p; recruitment to endosomes is mediated by the Vps2p-Vps24p subcomplex of ESCRT-III; also interacts with Vps4p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18032584]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 14562095]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 18032584]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 18032584]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ist1p join(825831..825899,826146..826754) Sugiyamaella lignohabitans 30036046 AWJ20_3968 CDS TAM41 NC_031671.1 826881 827792 R Mitochondrial phosphatidate cytidylyltransferase (CDP-DAG synthase); required for cardiolipin biosynthesis; viability of null mutant is strain-dependent; mRNA is targeted to the bud; mutant displays defect in mitochondrial protein import, likely due to altered membrane lipid composition; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 16790493]; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 16943180]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 16790493]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 16943180]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14690591]; GO_function: GO:0004605 - phosphatidate cytidylyltransferase activity [Evidence IDA,IMP] [PMID 23623749]; GO_process: GO:0032049 - cardiolipin biosynthetic process [Evidence IMP] [PMID 19114592]; GO_process: GO:0032049 - cardiolipin biosynthetic process [Evidence IGI] [PMID 20485265]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tam41p complement(826881..827792) Sugiyamaella lignohabitans 30036047 AWJ20_3970 CDS DCR2 NC_031671.1 832165 833886 R Phosphoesterase; involved in downregulation of the unfolded protein response (UPR), at least in part via dephosphorylation of Ire1p; dosage-dependent positive regulator of the G1/S phase transition through control of the timing of START; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IMP,ISS] [PMID 15590836]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA,IMP] [PMID 17673172]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IDA] [PMID 16990850]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IGI,IMP] [PMID 16990850]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 16990850]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA,IMP] [PMID 17673172]; GO_process: GO:0007089 - traversing start control point of mitotic cell cycle [Evidence IMP] [PMID 15590836]; Dcr2p complement(832165..833886) Sugiyamaella lignohabitans 30036050 AWJ20_3971 CDS FCF1 NC_031671.1 834153 834722 R Putative PINc domain nuclease; required for early cleavages of 35S pre-rRNA and maturation of 18S rRNA; component of the SSU (small subunit) processome involved in 40S ribosomal subunit biogenesis; copurifies with Faf1p; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16762320]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16769905]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA,IPI] [PMID 16769905]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16762320]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16769905]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Fcf1p complement(834153..834722) Sugiyamaella lignohabitans 30036051 AWJ20_3972 CDS PEP5 NC_031671.1 835067 837961 D tethering complex subunit PEP5 835067..837961 Sugiyamaella lignohabitans 30036052 AWJ20_3973 CDS AWJ20_3973 NC_031671.1 838154 840124 R Arginyl-tRNA synthetase; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YDR341C has a paralog, MSR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004814 - arginine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004814 - arginine-tRNA ligase activity [Evidence IDA] [PMID 9622124]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006420 - arginyl-tRNA aminoacylation [Evidence IDA] [PMID 9622124]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; arginine--tRNA ligase complement(838154..840124) Sugiyamaella lignohabitans 30036053 AWJ20_3974 CDS AWJ20_3974 NC_031671.1 840468 841616 D uncharacterized protein 840468..841616 Sugiyamaella lignohabitans 30036054 AWJ20_3975 CDS AWJ20_3975 NC_031671.1 841645 843585 R gephyrin complement(841645..843585) Sugiyamaella lignohabitans 30036055 AWJ20_3976 CDS PUT4 NC_031671.1 844164 845768 D Proline permease; required for high-affinity transport of proline; also transports the toxic proline analog azetidine-2-carboxylate (AzC); PUT4 transcription is repressed in ammonia-grown cells; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IMP] [PMID 3552672]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015175 - neutral amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IDA,IGI] [PMID 8455553]; GO_process: GO:0015804 - neutral amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0015824 - proline transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; proline permease PUT4 844164..845768 Sugiyamaella lignohabitans 30036056 AWJ20_3977 CDS SEN2 NC_031671.1 846185 847399 D Subunit of the tRNA splicing endonuclease; tRNA splicing endonuclease is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen2p contains the active site for tRNA 5' splice site cleavage and has similarity to Sen34p and to Archaeal tRNA splicing endonuclease; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA,IMP] [PMID 12925762]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000214 - tRNA-intron endonuclease complex [Evidence IEA]; GO_component: GO:0000214 - tRNA-intron endonuclease complex [Evidence IDA] [PMID 9200603]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000213 - tRNA-intron endonuclease activity [Evidence IEA]; GO_function: GO:0000213 - tRNA-intron endonuclease activity [Evidence IMP] [PMID 2182322]; GO_function: GO:0000213 - tRNA-intron endonuclease activity [Evidence IDA] [PMID 9200603]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IEA]; GO_process: GO:0000379 - tRNA-type intron splice site recognition and cleavage [Evidence IMP] [PMID 2182322]; GO_process: GO:0000379 - tRNA-type intron splice site recognition and cleavage [Evidence IDA] [PMID 9200603]; Sen2p 846185..847399 Sugiyamaella lignohabitans 30036057 AWJ20_3978 CDS AWJ20_3978 NC_031671.1 850123 850623 D uncharacterized protein 850123..850623 Sugiyamaella lignohabitans 30036058 AWJ20_3979 CDS AWJ20_3979 NC_031671.1 850722 851177 R uncharacterized protein complement(850722..851177) Sugiyamaella lignohabitans 30036059 AWJ20_3980 CDS AWJ20_3980 NC_031671.1 852101 852478 R splicing factor, SYF2 family complement(852101..852478) Sugiyamaella lignohabitans 30036061 AWJ20_3981 CDS AWJ20_3981 NC_031671.1 855167 856948 D uncharacterized protein 855167..856948 Sugiyamaella lignohabitans 30036062 AWJ20_3982 CDS SNF5 NC_031671.1 857672 860077 D Subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; functions interdependently in transcriptional activation with Snf2p and Snf6p; relocates to the cytosol under hypoxic conditions; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8016655]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA,IMP] [PMID 8159677]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0000228 - nuclear chromosome [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 2233708]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IPI] [PMID 11865042]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IMP,IPI] [PMID 14580348]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 14580348]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IGI,IMP] [PMID 1459453]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 16024655]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 1339306]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 1901413]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3542227]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0005987 - sucrose catabolic process [Evidence IMP] [PMID 6392017]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Snf5p 857672..860077 Sugiyamaella lignohabitans 30036063 AWJ20_3983 CDS HTS1 NC_031671.1 860200 861897 R Cytoplasmic and mitochondrial histidine tRNA synthetase; efficient mitochondrial localization requires both a presequence and an amino-terminal sequence; mutations in human ortholog HARS2 are associated with Perrault syndrome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 3521891]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 3521891]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IDA] [PMID 16741232]; GO_function: GO:0004821 - histidine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006427 - histidyl-tRNA aminoacylation [Evidence IMP] [PMID 1459448]; GO_process: GO:0006427 - histidyl-tRNA aminoacylation [Evidence IDA] [PMID 16741232]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI] [PMID 16777356]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; histidine--tRNA ligase complement(860200..861897) Sugiyamaella lignohabitans 30036064 AWJ20_3984 CDS TFA1 NC_031671.1 862339 863472 D TFIIE large subunit; involved in recruitment of RNA polymerase II to the promoter, activation of TFIIH, and promoter opening; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IDA] [PMID 1429681]; GO_component: GO:0005673 - transcription factor TFIIE complex [Evidence IDA] [PMID 7961670]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IPI] [PMID 11779853]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IDA] [PMID 8702741]; GO_function: GO:0001097 - TFIIH-class transcription factor binding [Evidence IDA] [PMID 8702741]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 9271406]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 1331084]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 1429681]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 7961670]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9188494]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9271406]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001113 - transcriptional open complex formation at RNA polymerase II promoter [Evidence IDA,IGI] [PMID 10973956]; Tfa1p 862339..863472 Sugiyamaella lignohabitans 30036065 AWJ20_3985 CDS AWJ20_3985 NC_031671.1 864284 866941 R uncharacterized protein complement(864284..866941) Sugiyamaella lignohabitans 30036066 AWJ20_3986 CDS VMA3 NC_031671.1 868717 869025 R Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase; dicyclohexylcarbodiimide binding subunit; required for vacuolar acidification and important for copper and iron metal ion homeostasis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 15252052]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033179 - proton-transporting V-type ATPase, V0 domain [Evidence IEA]; GO_component: GO:0033177 - proton-transporting two-sector ATPase complex, proton-transporting domain [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000220 - vacuolar proton-transporting V-type ATPase, V0 domain [Evidence TAS] [PMID 9442887]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence TAS] [PMID 12482875]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006878 - cellular copper ion homeostasis [Evidence IMP] [PMID 9434348]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 9434348]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 2145283]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 2145283]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence TAS] [PMID 12482875]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 2145283]; H(+)-transporting V0 sector ATPase subunit c complement(868717..869025) Sugiyamaella lignohabitans 30036067 AWJ20_3987 CDS PRP46 NC_031671.1 870547 871992 R Member of the NineTeen Complex (NTC); this complex contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; GO_component: GO:0000974 - Prp19 complex [Evidence IPI] [PMID 12088152]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IDA] [PMID 11884590]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 12554883]; Prp46p complement(870547..871992) Sugiyamaella lignohabitans 30036068 AWJ20_3988 CDS NUS1 NC_031671.1 884483 885475 D Putative prenyltransferase; required for cell viability; proposed to be involved in protein trafficking because tet-repressible mutant shows accumulation of hypoglycosylated forms of CPY; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11086160]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14690591]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24390141]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 14690591]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008834 - di-trans,poly-cis-decaprenylcistransferase activity [Evidence IEA]; GO_function: GO:0004659 - prenyltransferase activity [Evidence ISS] [PMID 14690591]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 16943325]; Nus1p 884483..885475 Sugiyamaella lignohabitans 30036069 AWJ20_3989 CDS NPR3 NC_031671.1 885790 888651 D Subunit of SEA (Seh1-associated), Npr2/3, and Iml1p complexes; Npr2/3 complex mediates downregulation of TORC1 activity upon amino acid limitation; SEA complex is a coatomer-related complex that associates dynamically with the vacuole; Iml1p complex (Iml1p-Npr2p-Npr3p) is required for non-nitrogen-starvation (NNS)-induced autophagy; required for Npr2p phosphorylation and Iml1p-Npr2p interaction; null mutant shows delayed meiotic DNA replication and double-strand break repair; GO_component: GO:1990130 - Iml1 complex [Evidence IDA] [PMID 21900499]; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0097042 - extrinsic component of fungal-type vacuolar membrane [Evidence IDA] [PMID 21454883]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034198 - cellular response to amino acid starvation [Evidence IMP] [PMID 19521502]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 18069899]; GO_process: GO:0032007 - negative regulation of TOR signaling [Evidence IMP] [PMID 19521502]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 24603354]; GO_process: GO:2000785 - regulation of autophagic vacuole assembly [Evidence IMP] [PMID 21900499]; GO_process: GO:0006810 - transport [Evidence IEA]; Npr3p 885790..888651 Sugiyamaella lignohabitans 30036070 AWJ20_3990 CDS UBC8 NC_031671.1 888921 889427 R Ubiquitin-conjugating enzyme that regulates gluconeogenesis; negatively regulates gluconeogenesis by mediating the glucose-induced ubiquitination of fructose-1,6-bisphosphatase (FBPase); cytoplasmic enzyme that catalyzes the ubiquitination of histones in vitro; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10811607]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 1869573]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 10811607]; E2 ubiquitin-conjugating protein UBC8 complement(888921..889427) Sugiyamaella lignohabitans 30036072 AWJ20_3991 CDS SPO7 NC_031671.1 890923 892407 D Nem1-Spo7 phosphatase regulatory subunit SPO7 890923..892407 Sugiyamaella lignohabitans 30036073 AWJ20_3992 CDS GPI13 NC_031671.1 893079 896186 D ER membrane localized phosphoryltransferase; adds phosphoethanolamine onto the third mannose residue of the glycosylphosphatidylinositol (GPI) anchor precursor; similar to human PIG-O protein; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence ISS] [PMID 10793139]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051377 - mannose-ethanolamine phosphotransferase activity [Evidence IMP] [PMID 12441642]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IMP] [PMID 10793139]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 10793139]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 12441642]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Gpi13p 893079..896186 Sugiyamaella lignohabitans 30036074 AWJ20_3993 CDS AWJ20_3993 NC_031671.1 896334 897368 R uncharacterized protein complement(896334..897368) Sugiyamaella lignohabitans 30036075 AWJ20_3994 CDS AWJ20_3994 NC_031671.1 897589 900696 R uncharacterized protein complement(897589..900696) Sugiyamaella lignohabitans 30036076 AWJ20_3995 CDS AWJ20_3995 NC_031671.1 901035 903077 R uncharacterized protein complement(901035..903077) Sugiyamaella lignohabitans 30036077 AWJ20_3996 CDS SVP26 NC_031671.1 907621 908304 D Integral membrane protein of the early Golgi apparatus and ER; involved in COP II vesicle transport; may also function to promote retention of proteins in the early Golgi compartment; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 16957051]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 16107716]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 16957051]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0097020 - COPII adaptor activity [Evidence IMP,IPI] [PMID 20236934]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IDA,IMP] [PMID 16957051]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 16107716]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 16107716]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 16107716]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Svp26p 907621..908304 Sugiyamaella lignohabitans 30036078 AWJ20_3997 CDS PRS2 NC_031671.1 909451 910419 D 5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, synthesizes PRPP; which is required for nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes; PRS2 has a paralog, PRS4, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA,IEA]; GO_function: GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IGI] [PMID 15280369]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IMP] [PMID 10212224]; GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IGI] [PMID 15280369]; GO_process: GO:0044249 - cellular biosynthetic process [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IPI] [PMID 15470112]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0009156 - ribonucleoside monophosphate biosynthetic process [Evidence IEA]; ribose phosphate diphosphokinase subunit PRS2 909451..910419 Sugiyamaella lignohabitans 30036079 AWJ20_3998 CDS SLY41 NC_031671.1 910743 912932 R Protein involved in ER-to-Golgi transport; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23613772]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 1903839]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Sly41p complement(910743..912932) Sugiyamaella lignohabitans 30036080 AWJ20_3999 CDS FRA1 NC_031671.1 914141 916000 R Protein involved in negative regulation of iron regulon transcription; forms an iron independent complex with Fra2p, Grx3p, and Grx4p; cytosolic; mutant fails to repress transcription of iron regulon and is defective in spore formation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18281282]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0034396 - negative regulation of transcription from RNA polymerase II promoter in response to iron [Evidence IGI,IMP] [PMID 18281282]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; Fra1p complement(914141..916000) Sugiyamaella lignohabitans 30036081 AWJ20_4000 CDS ERG11 NC_031671.1 916502 917815 R Lanosterol 14-alpha-demethylase; catalyzes the C-14 demethylation of lanosterol to form 4,4''-dimethyl cholesta-8,14,24-triene-3-beta-ol in the ergosterol biosynthesis pathway; member of the cytochrome P450 family; associated and coordinately regulated with the P450 reductase Ncp1p; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15951236]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_function: GO:0008398 - sterol 14-demethylase activity [Evidence IEA]; GO_function: GO:0008398 - sterol 14-demethylase activity [Evidence IDA] [PMID 9087488]; GO_process: GO:0070988 - demethylation [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; sterol 14-demethylase complement(916502..917815) Sugiyamaella lignohabitans 30036085 AWJ20_4001 CDS KAP122 NC_031671.1 920607 923210 D Karyopherin beta; responsible for import of the Toa1p-Toa2p complex into the nucleus; binds to nucleoporins Nup1p and Nup2p; may play a role in regulation of pleiotropic drug resistance; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005635 - nuclear envelope [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 10525531]; GO_process: GO:0006606 - protein import into nucleus [Evidence IDA,IMP] [PMID 10525531]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0006810 - transport [Evidence IEA]; Kap122p 920607..923210 Sugiyamaella lignohabitans 30036086 AWJ20_4002 CDS MAK32 NC_031671.1 923609 924694 R Protein necessary for stability of L-A dsRNA-containing particles; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0044419 - interspecies interaction between organisms [Evidence IMP] [PMID 3551911]; Mak32p complement(923609..924694) Sugiyamaella lignohabitans 30036087 AWJ20_4003 CDS NUP116 NC_031671.1 925146 927719 R FG-nucleoporin NUP116 complement(925146..927719) Sugiyamaella lignohabitans 30036088 AWJ20_4004 CDS NUP116 NC_031671.1 927802 928641 R FG-nucleoporin NUP116 complement(927802..928641) Sugiyamaella lignohabitans 30036089 AWJ20_4005 CDS RAD27 NC_031671.1 929516 930553 D 5' to 3' exonuclease, 5' flap endonuclease; required for Okazaki fragment processing and maturation, for long-patch base-excision repair and large loop repair (LLR), ribonucleotide excision repair; member of the S. pombe RAD2/FEN1 family; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19699691]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19699691]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0008409 - 5'-3' exonuclease activity [Evidence IEA]; GO_function: GO:0008409 - 5'-3' exonuclease activity [Evidence IDA] [PMID 9166764]; GO_function: GO:0017108 - 5'-flap endonuclease activity [Evidence IEA]; GO_function: GO:0017108 - 5'-flap endonuclease activity [Evidence IDA] [PMID 11825897]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA,IEA]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0043137 - DNA replication, removal of RNA primer [Evidence IEA]; GO_process: GO:0043137 - DNA replication, removal of RNA primer [Evidence IDA] [PMID 16837458]; GO_process: GO:0006284 - base-excision repair [Evidence IEA]; GO_process: GO:0006286 - base-excision repair, base-free sugar-phosphate removal [Evidence IGI,IMP] [PMID 9927726]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA] [PMID 15342630]; GO_process: GO:0000734 - gene conversion at mating-type locus, DNA repair synthesis [Evidence IMP] [PMID 10025407]; GO_process: GO:0035753 - maintenance of DNA trinucleotide repeats [Evidence IGI,IMP] [PMID 16079237]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA,IEA,IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 12024027]; multifunctional nuclease RAD27 929516..930553 Sugiyamaella lignohabitans 30036090 AWJ20_4006 CDS APN1 NC_031671.1 931642 932619 D Major apurinic/apyrimidinic endonuclease; 3'-repair diesterase; involved in repair of DNA damage by oxidation and alkylating agents; also functions as a 3'-5' exonuclease to repair 7,8-dihydro-8-oxodeoxyguanosine; genetically interacts with NTG1 to maintain mitochondrial genome integrity; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11238901]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7690756]; GO_function: GO:0017005 - 3'-tyrosyl-DNA phosphodiesterase activity [Evidence IDA] [PMID 12397185]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IDA] [PMID 12767225]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IMP,ISS] [PMID 1693433]; GO_function: GO:0008311 - double-stranded DNA 3'-5' exodeoxyribonuclease activity [Evidence IDA] [PMID 16024777]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008081 - phosphoric diester hydrolase activity [Evidence IDA] [PMID 3056935]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006284 - base-excision repair [Evidence IDA] [PMID 9295360]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; DNA-(apurinic or apyrimidinic site) lyase APN1 931642..932619 Sugiyamaella lignohabitans 30036091 AWJ20_4007 CDS AWJ20_4007 NC_031671.1 933560 935002 D arrestin (or S-antigen), N-terminal domain protein 933560..935002 Sugiyamaella lignohabitans 30036092 AWJ20_4008 CDS AWJ20_4008 NC_031671.1 937968 939551 D uncharacterized protein 937968..939551 Sugiyamaella lignohabitans 30036093 AWJ20_4009 CDS YPR1 NC_031671.1 940062 940955 D NADPH-dependent aldo-keto reductase; reduces multiple substrates including 2-methylbutyraldehyde and D,L-glyceraldehyde, expression is induced by osmotic and oxidative stress; functionally redundant with other aldo-keto reductases; protein abundance increases in response to DNA replication stress; YPR1 has a paralog, GCY1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence IDA] [PMID 19016485]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0042843 - D-xylose catabolic process [Evidence IDA] [PMID 12271459]; GO_process: GO:0019568 - arabinose catabolic process [Evidence IDA,IMP] [PMID 12271459]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; trifunctional aldehyde reductase/carbonyl reductase (NADPH)/glucose 1-dehydrogenase (NADP(+)) YPR1 940062..940955 Sugiyamaella lignohabitans 30036094 AWJ20_4010 CDS AWJ20_4010 NC_031671.1 941544 943850 D uncharacterized protein 941544..943850 Sugiyamaella lignohabitans 30036096 AWJ20_4011 CDS RFA1 NC_031671.1 946717 948507 R replication factor A subunit protein RFA1 complement(946717..948507) Sugiyamaella lignohabitans 30036097 AWJ20_4012 CDS AWJ20_4012 NC_031671.1 952156 954954 D uncharacterized protein 952156..954954 Sugiyamaella lignohabitans 30036098 AWJ20_4013 CDS SAS10 NC_031671.1 970817 972613 D Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit; disrupts silencing when overproduced; mutant has increased aneuploidy tolerance; essential gene; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9611201]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Sas10p 970817..972613 Sugiyamaella lignohabitans 30036099 AWJ20_4014 CDS AWJ20_4014 NC_031671.1 973080 973805 D uncharacterized protein 973080..973805 Sugiyamaella lignohabitans 30036100 AWJ20_4015 CDS AIM2 NC_031671.1 976058 976879 D protein AIM2 join(976058..976133,976176..976879) Sugiyamaella lignohabitans 30036101 AWJ20_4016 CDS mei2 NC_031671.1 977848 979965 D RNA-binding protein involved in meiosis Mei2 977848..979965 Sugiyamaella lignohabitans 30036102 AWJ20_4017 CDS HSL7 NC_031671.1 981659 983995 D Protein arginine N-methyltransferase; exhibits septin and Hsl1p-dependent bud neck localization and periodic Hsl1p-dependent phosphorylation; required along with Hsl1p for bud neck recruitment, phosphorylation, and degradation of Swe1p; relocalizes away from bud neck upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10490648]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10805747]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0032174 - cellular bud neck septin collar [Evidence IDA] [PMID 23389636]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0008469 - histone-arginine N-methyltransferase activity [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0035241 - protein-arginine omega-N monomethyltransferase activity [Evidence IDA] [PMID 16426232]; GO_function: GO:0035241 - protein-arginine omega-N monomethyltransferase activity [Evidence IDA] [PMID 18515076]; GO_function: GO:0035243 - protein-arginine omega-N symmetric methyltransferase activity [Evidence IDA] [PMID 18515076]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IGI,IMP] [PMID 10490630]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0044257 - cellular protein catabolic process [Evidence IMP] [PMID 23042131]; GO_process: GO:0034969 - histone arginine methylation [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0006479 - protein methylation [Evidence IEA]; GO_process: GO:0051726 - regulation of cell cycle [Evidence IMP] [PMID 8647431]; Hsl7p 981659..983995 Sugiyamaella lignohabitans 30036103 AWJ20_4018 CDS RRP5 NC_031671.1 990502 993891 R RNA binding protein involved in synthesis of both 18S and 5.8S rRNAs; component of both the ribosomal small subunit (SSU) processosome and the 90S preribosome; acts as part of a Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription and has a role in bigenesis of the large ribosomal subunit; has binding preference for single stranded tracts of U's; relocalizes from nucleolus to nucleus upon DNA replication stress; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 8896463]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0008266 - poly(U) RNA binding [Evidence IDA] [PMID 16428605]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000464 - endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp5p complement(990502..993891) Sugiyamaella lignohabitans 30036104 AWJ20_4019 CDS RRP5 NC_031671.1 994013 995830 R RNA binding protein involved in synthesis of both 18S and 5.8S rRNAs; component of both the ribosomal small subunit (SSU) processosome and the 90S preribosome; acts as part of a Mak21p-Noc2p-Rrp5p module that associates with nascent pre-rRNA during transcription and has a role in bigenesis of the large ribosomal subunit; has binding preference for single stranded tracts of U's; relocalizes from nucleolus to nucleus upon DNA replication stress; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 8896463]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0008266 - poly(U) RNA binding [Evidence IDA] [PMID 16428605]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000464 - endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 8896463]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rrp5p complement(join(994013..995530,995642..995830)) Sugiyamaella lignohabitans 30036105 AWJ20_4020 CDS MXR1 NC_031671.1 996712 997326 D Methionine-S-sulfoxide reductase; involved in the response to oxidative stress; protects iron-sulfur clusters from oxidative inactivation along with MXR2; involved in the regulation of lifespan; reduced activity of human homolog implicated in Alzheimer disease; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 20799725]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016671 - oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor [Evidence IEA]; GO_function: GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA,IEA]; GO_function: GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IDA,IMP] [PMID 15141092]; GO_function: GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IDA,IMP,ISS] [PMID 9275166]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI,IMP] [PMID 11929995]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 9275166]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0030091 - protein repair [Evidence IEA]; GO_process: GO:0006979 - response to oxidative stress [Evidence IEA]; Mxr1p 996712..997326 Sugiyamaella lignohabitans 30036107 AWJ20_4021 CDS AWJ20_4021 NC_031671.1 999749 1000363 D uncharacterized protein 999749..1000363 Sugiyamaella lignohabitans 30036108 AWJ20_4022 CDS AWJ20_4022 NC_031671.1 1001193 1002584 R uncharacterized protein complement(1001193..1002584) Sugiyamaella lignohabitans 30036109 AWJ20_4023 CDS AWJ20_4023 NC_031671.1 1004474 1007383 D uncharacterized protein 1004474..1007383 Sugiyamaella lignohabitans 30036110 AWJ20_4024 CDS HXK2 NC_031671.1 1009856 1011643 D Hexokinase isoenzyme 2; catalyzes phosphorylation of glucose in the cytosol; predominant hexokinase during growth on glucose; functions in the nucleus to repress expression of HXK1 and GLK1 and to induce expression of its own gene; antiapoptotic; phosphorylation/dephosphorylation at serine-14 by protein kinase Snf1p and protein phosphatase Glc7p-Reg1p regulates nucleocytoplasmic shuttling of Hxk2p; HXK2 has a paralog, HXK1, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11311123]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9563516]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11311123]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9563516]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004396 - hexokinase activity [Evidence IEA,IEA]; GO_function: GO:0004396 - hexokinase activity [Evidence IDA] [PMID 12611889]; GO_function: GO:0004396 - hexokinase activity [Evidence IDA] [PMID 332086]; GO_function: GO:0004396 - hexokinase activity [Evidence IMP] [PMID 6341351]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0046835 - carbohydrate phosphorylation [Evidence IEA,IEA]; GO_process: GO:0032445 - fructose import [Evidence IGI] [PMID 6300872]; GO_process: GO:0006000 - fructose metabolic process [Evidence IMP] [PMID 6300872]; GO_process: GO:0046323 - glucose import [Evidence IGI] [PMID 6300872]; GO_process: GO:0006006 - glucose metabolic process [Evidence IMP] [PMID 6300872]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IDA] [PMID 332086]; GO_process: GO:0006096 - glycolytic process [Evidence IDA,IMP] [PMID 8917466]; GO_process: GO:0019318 - hexose metabolic process [Evidence IEA]; GO_process: GO:0006013 - mannose metabolic process [Evidence IDA] [PMID 332086]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 12089449]; GO_process: GO:0046015 - regulation of transcription by glucose [Evidence IDA] [PMID 11311123]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 15722108]; hexokinase 2 1009856..1011643 Sugiyamaella lignohabitans 30036111 AWJ20_4025 CDS MSS4 NC_031671.1 1013454 1015280 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(1013454..1015280) Sugiyamaella lignohabitans 30036112 AWJ20_4026 CDS AWJ20_4026 NC_031671.1 1030228 1031409 R homogentisate 1,2-dioxygenase complement(1030228..1031409) Sugiyamaella lignohabitans 30036113 AWJ20_4027 CDS AWJ20_4027 NC_031671.1 1032590 1033435 D Mediator of RNA polymerase II transcription subunit 18 1032590..1033435 Sugiyamaella lignohabitans 30036114 AWJ20_4028 CDS NOP7 NC_031671.1 1033650 1035482 R Component of several different pre-ribosomal particles; forms a complex with Ytm1p and Erb1p that is required for maturation of the large ribosomal subunit; required for exit from G0 and the initiation of cell proliferation; GO_component: GO:0070545 - PeBoW complex [Evidence IDA,IPI] [PMID 16287855]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0043021 - ribonucleoprotein complex binding [Evidence IEA]; GO_process: GO:0044786 - cell cycle DNA replication [Evidence IMP] [PMID 12110181]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IDA] [PMID 11911362]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IDA] [PMID 16888624]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Nop7p complement(1033650..1035482) Sugiyamaella lignohabitans 30036115 AWJ20_4029 CDS STL1 NC_031671.1 1038269 1039882 R glucose-inactivated glycerol proton symporter STL1 complement(1038269..1039882) Sugiyamaella lignohabitans 30036116 AWJ20_4030 CDS SGA1 NC_031671.1 1042292 1043908 R Intracellular sporulation-specific glucoamylase; involved in glycogen degradation; induced during starvation of a/a diploids late in sporulation, but dispensable for sporulation; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 2493265]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004339 - glucan 1,4-alpha-glucosidase activity [Evidence IEA,IEA]; GO_function: GO:0004339 - glucan 1,4-alpha-glucosidase activity [Evidence IDA] [PMID 2493265]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP] [PMID 350852]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0005980 - glycogen catabolic process [Evidence IMP] [PMID 11486014]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; GO_process: GO:0005976 - polysaccharide metabolic process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; glucan 1,4-alpha-glucosidase complement(1042292..1043908) Sugiyamaella lignohabitans 30036118 AWJ20_4031 CDS ARK1 NC_031671.1 1046236 1049613 D serine/threonine protein kinase ARK1 1046236..1049613 Sugiyamaella lignohabitans 30036119 AWJ20_4032 CDS PCP1 NC_031671.1 1055708 1056874 D Mitochondrial serine protease; required for the processing of various mitochondrial proteins and maintenance of mitochondrial DNA and morphology; belongs to the rhomboid-GlpG superfamily of intramembrane peptidases; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 12774122]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 12774122]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IMP] [PMID 20558178]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0010821 - regulation of mitochondrion organization [Evidence IMP] [PMID 11907266]; GO_process: GO:0010821 - regulation of mitochondrion organization [Evidence IMP] [PMID 12707284]; GO_process: GO:0006465 - signal peptide processing [Evidence IMP] [PMID 12417197]; Pcp1p 1055708..1056874 Sugiyamaella lignohabitans 30036120 AWJ20_4033 CDS MSS4 NC_031671.1 1069797 1072009 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(join(1069797..1071562,1071847..1072009)) Sugiyamaella lignohabitans 30036121 AWJ20_4034 CDS MSS4 NC_031671.1 1073340 1074926 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(1073340..1074926) Sugiyamaella lignohabitans 30036122 AWJ20_4035 CDS UBC6 NC_031671.1 1078022 1078540 R Ubiquitin-conjugating enzyme involved in ERAD; located at the cytosolic side of the ER membrane; tail region contains a transmembrane segment at the C-terminus; substrate of the ubiquitin-proteasome pathway; ER-associated protein degradation is also known as ERAD; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8396728]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016881 - acid-amino acid ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 18191224]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 8396728]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18191224]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 8393731]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 8396728]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 8641272]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 8781238]; GO_process: GO:0006513 - protein monoubiquitination [Evidence IDA,IMP] [PMID 8396728]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IMP] [PMID 19345192]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; E2 ubiquitin-conjugating protein UBC6 complement(1078022..1078540) Sugiyamaella lignohabitans 30036123 AWJ20_4037 CDS AWJ20_4037 NC_031671.1 1082163 1083047 R U4/U6.U5 small nuclear ribonucleoprotein complement(1082163..1083047) Sugiyamaella lignohabitans 30036125 AWJ20_4038 CDS AWJ20_4038 NC_031671.1 1083338 1084726 D uncharacterized protein 1083338..1084726 Sugiyamaella lignohabitans 30036126 AWJ20_4039 CDS UBX7 NC_031671.1 1084955 1086989 R UBX (ubiquitin regulatory X) domain-containing protein; interacts with Cdc48p; UBX7 has a paralog, UBX6, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 14755638]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 14755638]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 14755638]; Ubx7p complement(join(1084955..1086664,1086873..1086989)) Sugiyamaella lignohabitans 30036127 AWJ20_4040 CDS PDC1 NC_031671.1 1087593 1089275 R Major of three pyruvate decarboxylase isozymes; key enzyme in alcoholic fermentation; decarboxylates pyruvate to acetaldehyde; involved in amino acid catabolism; subject to glucose-, ethanol-, and autoregulation; activated by phosphorylation in response to glucose levels; N-terminally propionylated in vivo; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 2665820]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16850348]; GO_function: GO:0047433 - branched-chain-2-oxoacid decarboxylase activity [Evidence IMP] [PMID 9546164]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IEA]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IDA] [PMID 23423327]; GO_function: GO:0004737 - pyruvate decarboxylase activity [Evidence IDA] [PMID 2404950]; GO_function: GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO_process: GO:0006559 - L-phenylalanine catabolic process [Evidence IGI] [PMID 12499363]; GO_process: GO:0000955 - amino acid catabolic process via Ehrlich pathway [Evidence IEA]; GO_process: GO:0000949 - aromatic amino acid family catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0019655 - glucose catabolic process to ethanol [Evidence IDA] [PMID 2404950]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006090 - pyruvate metabolic process [Evidence IDA] [PMID 2404950]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IGI] [PMID 12499363]; indolepyruvate decarboxylase 1 complement(1087593..1089275) Sugiyamaella lignohabitans 30036129 AWJ20_4041 CDS MSS4 NC_031671.1 1092052 1093860 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(1092052..1093860) Sugiyamaella lignohabitans 30036130 AWJ20_4042 CDS PMU1 NC_031671.1 1096481 1096882 R Putative phosphomutase; contains a region homologous to the active site of phosphomutases; overexpression suppresses the histidine auxotrophy of an ade3 ade16 ade17 triple mutant and the temperature sensitivity of a tps2 mutant; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Pmu1p complement(1096481..1096882) Sugiyamaella lignohabitans 30036131 AWJ20_4043 CDS CDC5 NC_031671.1 1098756 1100837 D Polo-like kinase; controls targeting and activation of Rho1p at cell division site via Rholp guanine nucleotide exchange factors; regulates Spc72p; also functions in adaptation to DNA damage during meiosis; has similarity to Xenopus Plx1 and S. pombe Plo1p; possible Cdc28p substrate; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10594031]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9819423]; GO_component: GO:0000922 - spindle pole [Evidence IDA] [PMID 10594031]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 16763112]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 12637549]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA,IMP] [PMID 17122856]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA,IMP] [PMID 8321244]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0010696 - positive regulation of spindle pole body separation [Evidence IGI,IMP] [PMID 18500339]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 16763112]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA,IMP] [PMID 17122856]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA,IMP] [PMID 8321244]; GO_process: GO:0000712 - resolution of meiotic recombination intermediates [Evidence IMP] [PMID 12717442]; GO_process: GO:0090306 - spindle assembly involved in meiosis [Evidence IMP] [PMID 20237423]; GO_process: GO:0070194 - synaptonemal complex disassembly [Evidence IGI] [PMID 18832066]; polo kinase CDC5 1098756..1100837 Sugiyamaella lignohabitans 30036132 AWJ20_4044 CDS SIN3 NC_031671.1 1104184 1104855 D transcriptional regulator SIN3 1104184..1104855 Sugiyamaella lignohabitans 30036133 AWJ20_4045 CDS SIN3 NC_031671.1 1105161 1109414 D transcriptional regulator SIN3 1105161..1109414 Sugiyamaella lignohabitans 30036134 AWJ20_4046 CDS PFA4 NC_031671.1 1112750 1113700 R Palmitoyltransferase with autoacylation activity; required for palmitoylation of amino acid permeases containing a C-terminal Phe-Trp-Cys site; required for modification of Chs3p; member of the DHHC family of putative palmitoyltransferases; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16647879]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016409 - palmitoyltransferase activity [Evidence IMP] [PMID 16818716]; GO_function: GO:0019706 - protein-cysteine S-palmitoyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0018345 - protein palmitoylation [Evidence IMP] [PMID 16751107]; GO_process: GO:0018345 - protein palmitoylation [Evidence IMP] [PMID 16818716]; Pfa4p complement(1112750..1113700) Sugiyamaella lignohabitans 30036135 AWJ20_4047 CDS ARG4 NC_031671.1 1114610 1116007 D Argininosuccinate lyase; catalyzes the final step in the arginine biosynthesis pathway; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_function: GO:0004056 - argininosuccinate lyase activity [Evidence IEA,IEA]; GO_function: GO:0004056 - argininosuccinate lyase activity [Evidence IDA] [PMID 4578972]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0006526 - arginine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]; GO_process: GO:0042450 - arginine biosynthetic process via ornithine [Evidence IDA] [PMID 4578972]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; argininosuccinate lyase ARG4 1114610..1116007 Sugiyamaella lignohabitans 30036136 AWJ20_4048 CDS MSS4 NC_031671.1 1117079 1118902 D Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 1117079..1118902 Sugiyamaella lignohabitans 30036137 AWJ20_4049 CDS AWJ20_4049 NC_031671.1 1120783 1121862 D uncharacterized protein 1120783..1121862 Sugiyamaella lignohabitans 30036138 AWJ20_4050 CDS IME2 NC_031671.1 1124805 1126031 D protein kinase IME2 1124805..1126031 Sugiyamaella lignohabitans 30036140 AWJ20_4051 CDS TEM1 NC_031671.1 1126288 1126947 R GTP-binding protein of the Ras superfamily; involved in termination of M-phase; controls actomyosin and septin dynamics during cytokinesis; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 19154724]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 12048186]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 10688190]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence TAS] [PMID 16039591]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Ras family GTPase TEM1 complement(1126288..1126947) Sugiyamaella lignohabitans 30036141 AWJ20_4052 CDS AWJ20_4052 NC_031671.1 1128006 1128641 D uncharacterized protein 1128006..1128641 Sugiyamaella lignohabitans 30036142 AWJ20_4053 CDS ILV5 NC_031671.1 1131271 1132494 D Acetohydroxyacid reductoisomerase and mtDNA binding protein; involved in branched-chain amino acid biosynthesis and maintenance of wild-type mitochondrial DNA; found in mitochondrial nucleoids; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 18193418]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 18023287]; GO_function: GO:0004455 - ketol-acid reductoisomerase activity [Evidence IEA,IEA]; GO_function: GO:0004455 - ketol-acid reductoisomerase activity [Evidence IMP] [PMID 14124940]; GO_function: GO:0004455 - ketol-acid reductoisomerase activity [Evidence IMP] [PMID 3027658]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IMP] [PMID 14124940]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 18826960]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 7621838]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]; ketol-acid reductoisomerase 1131271..1132494 Sugiyamaella lignohabitans 30036143 AWJ20_4054 CDS MSS4 NC_031671.1 1135285 1137090 D Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 1135285..1137090 Sugiyamaella lignohabitans 30036144 AWJ20_4055 CDS ERB1 NC_031671.1 1138124 1140604 R Constituent of 66S pre-ribosomal particles; forms a complex with Nop7p and Ytm1p that is required for maturation of the large ribosomal subunit; required for maturation of the 25S and 5.8S ribosomal RNAs; homologous to mammalian Bop1; GO_component: GO:0070545 - PeBoW complex [Evidence IDA,IPI] [PMID 16287855]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0043021 - ribonucleoprotein complex binding [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11522832]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IPI] [PMID 16287855]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Erb1p complement(1138124..1140604) Sugiyamaella lignohabitans 30036145 AWJ20_4056 CDS HSH49 NC_031671.1 1141005 1141865 D U2-snRNP associated splicing factor; similar to the mammalian splicing factor SAP49; proposed to function as a U2-snRNP assembly factor along with Hsh155p and binding partner Cus1p; contains two RNA recognition motifs (RRM); GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 15565172]; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 16314500]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9436903]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 16314500]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP,IPI] [PMID 9436903]; Hsh49p 1141005..1141865 Sugiyamaella lignohabitans 30036146 AWJ20_4057 CDS STE50 NC_031671.1 1142101 1143663 R Protein involved in mating response; invasive/filamentous growth, and osmotolerance, acts as an adaptor that links G protein-associated Cdc42p-Ste20p complex to the effector Ste11p to modulate signal transduction; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9742096]; GO_function: GO:0032093 - SAM domain binding [Evidence IDA] [PMID 16337230]; GO_function: GO:0019887 - protein kinase regulator activity [Evidence IDA,IPI] [PMID 10397774]; GO_process: GO:0000161 - MAPK cascade involved in osmosensory signaling pathway [Evidence IMP,IPI] [PMID 9742096]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0007050 - cell cycle arrest [Evidence IEA]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 12455951]; GO_process: GO:0007232 - osmosensory signaling pathway via Sho1 osmosensor [Evidence IMP] [PMID 11370856]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP,IPI] [PMID 8793874]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0001402 - signal transduction involved in filamentous growth [Evidence IMP,IPI] [PMID 9738877]; Ste50p complement(1142101..1143663) Sugiyamaella lignohabitans 30036147 AWJ20_4058 CDS AWJ20_4058 NC_031671.1 1148799 1151465 R uncharacterized protein complement(1148799..1151465) Sugiyamaella lignohabitans 30036148 AWJ20_4059 CDS AWJ20_4059 NC_031671.1 1152565 1153131 D uncharacterized protein 1152565..1153131 Sugiyamaella lignohabitans 30036149 AWJ20_4060 CDS PSA1 NC_031671.1 1155794 1157035 R GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase); synthesizes GDP-mannose from GTP and mannose-1-phosphate in cell wall biosynthesis; required for normal cell wall structure; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0004475 - mannose-1-phosphate guanylyltransferase activity [Evidence IEA]; GO_function: GO:0004475 - mannose-1-phosphate guanylyltransferase activity [Evidence IDA,IMP] [PMID 9195935]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IEA]; GO_process: GO:0009298 - GDP-mannose biosynthetic process [Evidence IDA,IMP] [PMID 9195935]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 11055399]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 9195935]; mannose-1-phosphate guanylyltransferase complement(1155794..1157035) Sugiyamaella lignohabitans 30036151 AWJ20_4061 CDS YME1 NC_031671.1 1160690 1162867 R Catalytic subunit of the i-AAA protease complex; complex is located in the mitochondrial inner membrane; responsible for degradation of unfolded or misfolded mitochondrial gene products; serves as a nonconventional translocation motor to pull PNPase into the intermembrane space; also has a role in intermembrane space protein folding; mutation causes an elevated rate of mitochondrial turnover; GO_component: GO:0031942 - i-AAA complex [Evidence IDA] [PMID 16267274]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 8688560]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IMP] [PMID 15772085]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IGI] [PMID 8688560]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 18843051]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 22993211]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence IDA,IMP] [PMID 16966379]; GO_process: GO:0051604 - protein maturation [Evidence IMP] [PMID 16966379]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; i-AAA protease YME1 complement(1160690..1162867) Sugiyamaella lignohabitans 30036152 AWJ20_4062 CDS AWJ20_4062 NC_031671.1 1161813 1162091 D uncharacterized protein 1161813..1162091 Sugiyamaella lignohabitans 30036153 AWJ20_4063 CDS AWJ20_4063 NC_031671.1 1170305 1171174 R Esterase that can function as an S-formylglutathione hydrolase; non-essential intracellular esterase; may be involved in the detoxification of formaldehyde, which can be metabolized to S-formylglutathione; similar to human esterase D; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10427036]; GO_function: GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0018738 - S-formylglutathione hydrolase activity [Evidence IDA] [PMID 10427036]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0046294 - formaldehyde catabolic process [Evidence IEA]; GO_process: GO:0046294 - formaldehyde catabolic process [Evidence IMP] [PMID 10427036]; S-formylglutathione hydrolase complement(1170305..1171174) Sugiyamaella lignohabitans 30036154 AWJ20_4064 CDS DMA2 NC_031671.1 1171610 1173238 R Ubiquitin-protein ligase (E3); controls septin dynamics and spindle position checkpoint (SPOC) with ligase Dma1p by regulating recruitment of Elm1p to bud neck; regulates levels of eIF2 subunit Gcd11p, as well as abundance, localization, and ubiquitination of Cdk inhibitory kinase Swe1p; ortholog of human RNF8, similar to human Chfr; contains FHA and RING finger domains; DMA2 has a paralog, DMA1, that arose from the whole genome duplication; GO_component: GO:0032177 - cellular bud neck split septin rings [Evidence IMP] [PMID 23442799]; GO_component: GO:0005934 - cellular bud tip [Evidence IMP] [PMID 23442799]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 18202552]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0032186 - cellular bud neck septin ring organization [Evidence IGI] [PMID 22570619]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI] [PMID 15146058]; GO_process: GO:0000132 - establishment of mitotic spindle orientation [Evidence IGI] [PMID 22570619]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0031578 - mitotic spindle orientation checkpoint [Evidence IGI] [PMID 15146058]; GO_process: GO:0031578 - mitotic spindle orientation checkpoint [Evidence IGI] [PMID 22570619]; GO_process: GO:0051865 - protein autoubiquitination [Evidence IDA] [PMID 18202552]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IGI] [PMID 22570619]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IGI] [PMID 21562220]; GO_process: GO:0000921 - septin ring assembly [Evidence IGI] [PMID 15146058]; GO_process: GO:0000921 - septin ring assembly [Evidence IGI] [PMID 22570619]; ubiquitin-conjugating protein DMA2 complement(1171610..1173238) Sugiyamaella lignohabitans 30036155 AWJ20_4065 CDS MLS1 NC_031671.1 1176319 1177995 D Malate synthase, enzyme of the glyoxylate cycle; involved in utilization of non-fermentable carbon sources; expression is subject to carbon catabolite repression; localizes in peroxisomes during growth on oleic acid, otherwise cytosolic; can accept butyryl-CoA as acyl-CoA donor in addition to traditional substrate acetyl-CoA; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 11846793]; GO_component: GO:0009514 - glyoxysome [Evidence IEA,IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 11846793]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 2211514]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004474 - malate synthase activity [Evidence IEA,IEA]; GO_function: GO:0004474 - malate synthase activity [Evidence IMP] [PMID 23642236]; GO_function: GO:0004474 - malate synthase activity [Evidence IMP] [PMID 8878673]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IMP] [PMID 23642236]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IMP] [PMID 8878673]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; malate synthase MLS1 1176319..1177995 Sugiyamaella lignohabitans 30036156 AWJ20_4066 CDS OLA1 NC_031671.1 1179552 1180280 R P-loop ATPase with similarity to human OLA1 and bacterial YchF; identified as specifically interacting with the proteasome; null mutant displays increased translation rate and increased readthrough of premature stop codons; protein abundance increases in response to hydrogen peroxide and to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 17430889]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Ola1p complement(1179552..1180280) Sugiyamaella lignohabitans 30036157 AWJ20_4067 CDS AWJ20_4067 NC_031671.1 1181633 1182160 R uncharacterized protein complement(1181633..1182160) Sugiyamaella lignohabitans 30036158 AWJ20_4068 CDS AWJ20_4068 NC_031671.1 1182300 1182536 R uncharacterized protein complement(1182300..1182536) Sugiyamaella lignohabitans 30036159 AWJ20_4069 CDS OTU2 NC_031671.1 1183720 1184400 R hypothetical protein; may interact with ribosomes, based on co-purification experiments; member of the ovarian tumor-like (OTU) superfamily of predicted cysteine proteases; shows cytoplasmic localization; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Otu2p complement(1183720..1184400) Sugiyamaella lignohabitans 30036160 AWJ20_4070 CDS AWJ20_4070 NC_031671.1 1185162 1187309 R Pentatricopeptide repeat-containing protein complement(1185162..1187309) Sugiyamaella lignohabitans 30036162 AWJ20_4071 CDS AWJ20_4071 NC_031671.1 1192110 1194677 D uncharacterized protein 1192110..1194677 Sugiyamaella lignohabitans 30036163 AWJ20_4072 CDS KRE6 NC_031671.1 1198660 1200927 D Type II integral membrane protein; required for beta-1,6 glucan biosynthesis; putative beta-glucan synthase; localizes to ER, plasma membrane, sites of polarized growth and secretory vesicles; functionally redundant with Skn1p; KRE6 has a paralog, SKN1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 17893149]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 7929594]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 21193403]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 21193403]; GO_component: GO:0030133 - transport vesicle [Evidence IDA] [PMID 21193403]; GO_function: GO:0015926 - glucosidase activity [Evidence IMP,ISS] [PMID 10601196]; GO_process: GO:0006078 - (1->6)-beta-D-glucan biosynthetic process [Evidence IMP,ISS] [PMID 7929594]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 7929594]; beta-glucan synthesis-associated protein KRE6 1198660..1200927 Sugiyamaella lignohabitans 30036164 AWJ20_4073 CDS NFU1 NC_031671.1 1201629 1202486 D Protein involved in iron metabolism in mitochondria; similar to NifU, which is a protein required for the maturation of the Fe/S clusters of nitrogenase in nitrogen-fixing bacteria; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 10468587]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP,ISS] [PMID 10468587]; GO_process: GO:0006880 - intracellular sequestering of iron ion [Evidence IMP] [PMID 10588895]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 10468587]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 10588895]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 12065597]; Nfu1p 1201629..1202486 Sugiyamaella lignohabitans 30036165 AWJ20_4074 CDS PAB1 NC_031671.1 1203033 1205888 R Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15630021]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15769879]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15630021]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15769879]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 8631901]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA,IMP] [PMID 9193001]; GO_function: GO:0008428 - ribonuclease inhibitor activity [Evidence IDA] [PMID 11889048]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0060211 - regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IDA,IMP] [PMID 17766253]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA,IMP] [PMID 10357826]; GO_process: GO:0006810 - transport [Evidence IEA]; polyadenylate-binding protein complement(1203033..1205888) Sugiyamaella lignohabitans 30036166 AWJ20_4075 CDS AWJ20_4075 NC_031671.1 1209025 1210143 D uncharacterized protein 1209025..1210143 Sugiyamaella lignohabitans 30036167 AWJ20_4076 CDS SCS3 NC_031671.1 1211645 1213468 D Protein required for inositol prototrophy; required for normal ER membrane biosynthesis; ortholog of the FIT family of proteins involved in triglyceride droplet biosynthesis and homologous to human FIT2; disputed role in the synthesis of inositol phospholipids from inositol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IMP] [PMID 22927826]; GO_process: GO:0006644 - phospholipid metabolic process [Evidence IMP] [PMID 7706223]; Scs3p 1211645..1213468 Sugiyamaella lignohabitans 30036168 AWJ20_4077 CDS AWJ20_4077 NC_031671.1 1215404 1217140 D Putative kinase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; putative phosphotransferase 1215404..1217140 Sugiyamaella lignohabitans 30036169 AWJ20_4078 CDS RAD50 NC_031671.1 1217345 1220932 R MRX complex DNA-binding subunit complement(1217345..1220932) Sugiyamaella lignohabitans 30036170 AWJ20_4079 CDS AWJ20_4079 NC_031671.1 1225634 1228528 R uncharacterized protein complement(1225634..1228528) Sugiyamaella lignohabitans 30036171 AWJ20_4080 CDS CPD1 NC_031671.1 1230699 1231325 D Cyclic nucleotide phosphodiesterase; hydrolyzes ADP-ribose 1'', 2''-cyclic phosphate to ADP-ribose 1''-phosphate; may have a role in tRNA splicing; no detectable phenotype is conferred by null mutation or by overexpression; protein abundance increases in response to DNA replication stress; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030136 - clathrin-coated vesicle [Evidence IDA] [PMID 14562095]; GO_function: GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IEA]; GO_function: GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IDA,IMP] [PMID 10734185]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004112 - cyclic-nucleotide phosphodiesterase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0009187 - cyclic nucleotide metabolic process [Evidence IDA] [PMID 10734185]; Cpd1p 1230699..1231325 Sugiyamaella lignohabitans 30036173 AWJ20_4082 CDS AWJ20_4082 NC_031671.1 1232891 1234750 D uncharacterized protein 1232891..1234750 Sugiyamaella lignohabitans 30036175 AWJ20_4083 CDS PCD1 NC_031671.1 1234947 1235870 R 8-oxo-dGTP diphosphatase; prevents spontaneous mutagenesis via sanitization of oxidized purine nucleoside triphosphates; can also act as peroxisomal pyrophosphatase with specificity for coenzyme A and CoA derivatives, may function to remove potentially toxic oxidized CoA disulfide from peroxisomes to maintain the capacity for beta-oxidation of fatty acids; nudix hydrolase family member; similar E. coli MutT and human, rat and mouse MTH1; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 10922370]; GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity [Evidence IDA,IMP] [PMID 15475388]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016462 - pyrophosphatase activity [Evidence IDA] [PMID 10922370]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 15475388]; GO_process: GO:0009132 - nucleoside diphosphate metabolic process [Evidence IEA]; Pcd1p complement(1234947..1235870) Sugiyamaella lignohabitans 30036176 AWJ20_4084 CDS AWJ20_4084 NC_031671.1 1237151 1238761 D uncharacterized protein 1237151..1238761 Sugiyamaella lignohabitans 30036177 AWJ20_4085 CDS APM1 NC_031671.1 1238952 1240472 R Mu1-like medium subunit of the AP-1 complex; binds clathrin; involved in clathrin-dependent Golgi protein sorting; the AP-1 complex is the clathrin-associated protein complex; GO_component: GO:0030121 - AP-1 adaptor complex [Evidence IPI,ISS] [PMID 10564262]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0016023 - cytoplasmic membrane-bounded vesicle [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IPI,ISS] [PMID 10564262]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 17003107]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IPI,ISS] [PMID 10564262]; Apm1p complement(1238952..1240472) Sugiyamaella lignohabitans 30036178 AWJ20_4086 CDS MSS4 NC_031671.1 1243377 1245305 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(join(1243377..1245199,1245281..1245305)) Sugiyamaella lignohabitans 30036179 AWJ20_4087 CDS LEU1 NC_031671.1 1247586 1249883 D Isopropylmalate isomerase; catalyzes the second step in the leucine biosynthesis pathway; GO_component: GO:0009316 - 3-isopropylmalate dehydratase complex [Evidence IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 4355481]; GO_function: GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IMP] [PMID 5724969]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IMP] [PMID 5724969]; GO_process: GO:0009098 - leucine biosynthetic process [Evidence IMP] [PMID 6323436]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; 3-isopropylmalate dehydratase LEU1 1247586..1249883 Sugiyamaella lignohabitans 30036180 AWJ20_4088 CDS AWJ20_4088 NC_031671.1 1250086 1252281 R Csc1p complement(1250086..1252281) Sugiyamaella lignohabitans 30036181 AWJ20_4089 CDS CPR6 NC_031671.1 1254758 1255651 R Peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; plays a role in determining prion variants; binds to Hsp82p and contributes to chaperone activity; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9191025]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 10942767]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 9191025]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 10942767]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA,IPI] [PMID 9927435]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 10942767]; peptidylprolyl isomerase CPR6 complement(1254758..1255651) Sugiyamaella lignohabitans 30036182 AWJ20_4090 CDS MIF2 NC_031671.1 1256697 1257446 R Muscle M-line assembly protein unc-89 complement(1256697..1257446) Sugiyamaella lignohabitans 30036184 AWJ20_4091 CDS CRD1 NC_031671.1 1258029 1259045 D Cardiolipin synthase; produces cardiolipin, which is a phospholipid of the mitochondrial inner membrane that is required for normal mitochondrial membrane potential and function; required to maintain tubular mitochondrial morphology and functions in mitochondrial fusion; also required for normal vacuolar ion homeostasis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008808 - cardiolipin synthase activity [Evidence IDA] [PMID 7564918]; GO_function: GO:0008808 - cardiolipin synthase activity [Evidence IMP] [PMID 9614098]; GO_function: GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 18799619]; GO_process: GO:0008610 - lipid biosynthetic process [Evidence IDA] [PMID 7564918]; GO_process: GO:0008610 - lipid biosynthetic process [Evidence IMP] [PMID 9614098]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0007006 - mitochondrial membrane organization [Evidence IMP] [PMID 10777514]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; cardiolipin synthase 1258029..1259045 Sugiyamaella lignohabitans 30036185 AWJ20_4092 CDS CCT4 NC_031671.1 1259270 1260904 R Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct4p complement(1259270..1260904) Sugiyamaella lignohabitans 30036186 AWJ20_4093 CDS AWJ20_4093 NC_031671.1 1259382 1260035 D uncharacterized protein 1259382..1260035 Sugiyamaella lignohabitans 30036187 AWJ20_4094 CDS CDC123 NC_031671.1 1261573 1262772 D Protein involved in nutritional control of the cell cycle; regulates abundance of the translation initiation factor eIF2; ortholog of human D123 protein; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007346 - regulation of mitotic cell cycle [Evidence IMP] [PMID 15319434]; GO_process: GO:0006417 - regulation of translation [Evidence IGI] [PMID 15319434]; Cdc123p 1261573..1262772 Sugiyamaella lignohabitans 30036188 AWJ20_4095 CDS TIM17 NC_031671.1 1263486 1263962 D Essential component of the TIM23 complex; with Tim23p, contributes to the architecture and function of the import channel; may link the import motor to the core Translocase of the Inner Mitochondrial membrane (TIM23 complex); GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IDA] [PMID 15618217]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IPI] [PMID 7600576]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015266 - protein channel activity [Evidence IMP] [PMID 11344168]; GO_function: GO:0015266 - protein channel activity [Evidence IMP] [PMID 15618217]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 18826960]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 11344168]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 15618217]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 7600576]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 7919535]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; protein transporter TIM17 1263486..1263962 Sugiyamaella lignohabitans 30036189 AWJ20_4096 CDS AWJ20_4096 NC_031671.1 1263503 1263886 R uncharacterized protein complement(1263503..1263886) Sugiyamaella lignohabitans 30036190 AWJ20_4097 CDS AWJ20_4097 NC_031671.1 1264627 1266798 D uncharacterized protein 1264627..1266798 Sugiyamaella lignohabitans 30036191 AWJ20_4098 CDS AWJ20_4098 NC_031671.1 1270742 1271377 D uncharacterized protein 1270742..1271377 Sugiyamaella lignohabitans 30036192 AWJ20_4099 CDS AWJ20_4099 NC_031671.1 1271985 1272536 R uncharacterized protein complement(1271985..1272536) Sugiyamaella lignohabitans 30036193 AWJ20_4100 CDS TRM1 NC_031671.1 1272978 1274702 D tRNA methyltransferase; two forms of the protein are made by alternative translation starts; localizes to both the nucleus and mitochondrion to produce the modified base N2,N2-dimethylguanosine in tRNAs in both compartments; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 7599275]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 7599275]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IEA]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IMP] [PMID 19602197]; GO_component: GO:0005637 - nuclear inner membrane [Evidence IDA] [PMID 7599275]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0004809 - tRNA (guanine-N2-)-methyltransferase activity [Evidence IEA]; GO_function: GO:0004809 - tRNA (guanine-N2-)-methyltransferase activity [Evidence IDA,IMP] [PMID 9801306]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IMP] [PMID 2426253]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Trm1p 1272978..1274702 Sugiyamaella lignohabitans 30036196 AWJ20_4101 CDS PUF4 NC_031671.1 1275145 1278597 R Member of the PUF protein family; PUF family is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence ISS] [PMID 11101532]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15024427]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 18327269]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0001308 - negative regulation of chromatin silencing involved in replicative cell aging [Evidence IGI,IMP] [PMID 9150138]; GO_process: GO:0017148 - negative regulation of translation [Evidence IDA] [PMID 20427513]; GO_process: GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IGI] [PMID 11101532]; GO_process: GO:0008104 - protein localization [Evidence IMP] [PMID 9150138]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Puf4p complement(1275145..1278597) Sugiyamaella lignohabitans 30036197 AWJ20_4102 CDS AWJ20_4102 NC_031671.1 1287534 1289027 R uncharacterized protein complement(1287534..1289027) Sugiyamaella lignohabitans 30036198 AWJ20_4103 CDS PMA1 NC_031671.1 1289652 1292459 R Plasma membrane H+-ATPase; pumps protons out of the cell; major regulator of cytoplasmic pH and plasma membrane potential; P2-type ATPase; Hsp30p plays a role in Pma1p regulation; interactions with Std1p appear to propagate [GAR+]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 10716729]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 15536122]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11739806]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12469340]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IEA]; GO_function: GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IDA] [PMID 17912695]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:1902906 - proteasome storage granule assembly [Evidence IMP] [PMID 23690178]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IDA] [PMID 8396147]; GO_process: GO:0006885 - regulation of pH [Evidence IEP] [PMID 8929277]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 8396147]; GO_process: GO:0006810 - transport [Evidence IEA]; H(+)-exporting P2-type ATPase PMA1 complement(1289652..1292459) Sugiyamaella lignohabitans 30036199 AWJ20_4104 CDS SAN1 NC_031671.1 1293140 1295671 R Ubiquitin-protein ligase; involved in proteasome-dependent degradation of aberrant nuclear proteins; targets substrates with regions of exposed hydrophobicity containing 5 or more contiguous hydrophobic residues; contains intrinsically disordered regions that contribute to substrate recognition; prefers a window of exposed hydrophobicity that causes a particular level of protein insolubility, suggesting that San1p evolved to target highly aggregation-prone proteins; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 20080635]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15797381]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 15078868]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 15797381]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20080635]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 15078868]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IDA,IMP] [PMID 15797381]; GO_process: GO:0051788 - response to misfolded protein [Evidence IMP] [PMID 15797381]; ubiquitin-protein ligase SAN1 complement(1293140..1295671) Sugiyamaella lignohabitans 30036200 AWJ20_4105 CDS FCY1 NC_031671.1 1297314 1297706 R Cytosine deaminase; zinc metalloenzyme that catalyzes the hydrolytic deamination of cytosine to uracil; of biomedical interest because it also catalyzes the deamination of 5-fluorocytosine (5FC) to form anticancer drug 5-fluorouracil (5FU); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004131 - cytosine deaminase activity [Evidence IEA]; GO_function: GO:0004131 - cytosine deaminase activity [Evidence IDA] [PMID 15535715]; GO_function: GO:0004131 - cytosine deaminase activity [Evidence IDA] [PMID 9000374]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0044206 - UMP salvage [Evidence IEA]; GO_process: GO:0046087 - cytidine metabolic process [Evidence IMP] [PMID 10501935]; GO_process: GO:0019858 - cytosine metabolic process [Evidence IMP] [PMID 9000374]; GO_process: GO:0008655 - pyrimidine-containing compound salvage [Evidence IMP] [PMID 9000374]; cytosine deaminase complement(1297314..1297706) Sugiyamaella lignohabitans 30036201 AWJ20_4106 CDS AMS1 NC_031671.1 1298237 1301596 R Vacuolar alpha mannosidase; involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 3281936]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence IEA,IEA]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence ISS] [PMID 2675832]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence IDA] [PMID 3281936]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0015923 - mannosidase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence ISS] [PMID 2675832]; GO_process: GO:0006013 - mannose metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009313 - oligosaccharide catabolic process [Evidence IMP] [PMID 12723970]; Ams1p complement(1298237..1301596) Sugiyamaella lignohabitans 30036202 AWJ20_4107 CDS JLP1 NC_031671.1 1302377 1303492 R Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p complement(1302377..1303492) Sugiyamaella lignohabitans 30036203 AWJ20_4108 CDS NUP170 NC_031671.1 1303922 1307581 R Subunit of the inner ring of the nuclear pore complex (NPC); contributes to NPC assembly and nucleocytoplasmic transport; both Nup170p and NUP157p are similar to human Nup155p; NUP170 has a paralog, NUP157, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0044611 - nuclear pore inner ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 12509452]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 17418788]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IMP] [PMID 19414606]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IGI] [PMID 19414608]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IGI] [PMID 20498018]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 11290711]; GO_process: GO:0070869 - heterochromatin assembly involved in chromatin silencing [Evidence IMP] [PMID 23452847]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI,IMP,IPI] [PMID 12473689]; GO_process: GO:0051292 - nuclear pore complex assembly [Evidence IGI] [PMID 19414608]; GO_process: GO:0051292 - nuclear pore complex assembly [Evidence IGI] [PMID 20498018]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IEA]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IC] [PMID 10684247]; GO_process: GO:0036228 - protein targeting to nuclear inner membrane [Evidence IMP] [PMID 16929305]; GO_process: GO:0036228 - protein targeting to nuclear inner membrane [Evidence IMP] [PMID 21659568]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nup170p complement(1303922..1307581) Sugiyamaella lignohabitans 30036204 AWJ20_4109 CDS RIM21 NC_031671.1 1309183 1311084 D pH sensor molecule, component of the RIM101 pathway; has a role in cell wall construction and alkaline pH response; is glycosylated and phosphorylated; interacts with Dfg16p and Rim9p to form a pH-sensing complex; localization to the plasma membrane is dependent on Dfg16p and Rim9p; has similarity to A. nidulans PalH; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23019326]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 10821185]; GO_process: GO:0071469 - cellular response to alkalinity [Evidence IMP] [PMID 23019326]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IGI,IMP] [PMID 16524906]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 10821185]; Rim21p 1309183..1311084 Sugiyamaella lignohabitans 30036205 AWJ20_4110 CDS AWJ20_4110 NC_031671.1 1311241 1311726 R uncharacterized protein complement(1311241..1311726) Sugiyamaella lignohabitans 30036207 AWJ20_4111 CDS ORC4 NC_031671.1 1311847 1312758 R Subunit of the origin recognition complex (ORC); ORC directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; ORC4 has a paralog, RIF2, that arose from the whole genome duplication; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005664 - nuclear origin of replication recognition complex [Evidence IDA,IMP] [PMID 9372948]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0000808 - origin recognition complex [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 16716188]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 12897051]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; origin recognition complex subunit 4 complement(1311847..1312758) Sugiyamaella lignohabitans 30036208 AWJ20_4112 CDS AWJ20_4112 NC_031671.1 1312948 1314735 D uncharacterized protein 1312948..1314735 Sugiyamaella lignohabitans 30036209 AWJ20_4113 CDS AWJ20_4113 NC_031671.1 1314842 1315777 R uncharacterized protein complement(1314842..1315777) Sugiyamaella lignohabitans 30036210 AWJ20_4114 CDS PEX7 NC_031671.1 1316743 1317897 D Peroxisomal signal receptor for peroxisomal matrix proteins; recognizes the N-terminal nonapeptide signal (PTS2); WD repeat protein; defects in human homolog cause lethal rhizomelic chondrodysplasia punctata (RCDP); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15545321]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 7957058]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 15545321]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 7535304]; GO_function: GO:0005053 - peroxisome matrix targeting signal-2 binding [Evidence IPI] [PMID 8636211]; GO_function: GO:0005053 - peroxisome matrix targeting signal-2 binding [Evidence IDA] [PMID 8670791]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 10087260]; GO_process: GO:0016560 - protein import into peroxisome matrix, docking [Evidence IPI] [PMID 9094717]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Pex7p 1316743..1317897 Sugiyamaella lignohabitans 30036211 AWJ20_4115 CDS SPE3 NC_031671.1 1319321 1319977 D Spermidine synthase; involved in biosynthesis of spermidine and also in biosynthesis of pantothenic acid; spermidine is required for growth of wild-type cells; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004766 - spermidine synthase activity [Evidence IEA]; GO_function: GO:0004766 - spermidine synthase activity [Evidence IMP,ISS] [PMID 9073064]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006596 - polyamine biosynthetic process [Evidence IEA]; GO_process: GO:0008295 - spermidine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008295 - spermidine biosynthetic process [Evidence IMP] [PMID 9073064]; spermidine synthase 1319321..1319977 Sugiyamaella lignohabitans 30036212 AWJ20_4116 CDS CIT1 NC_031671.1 1324349 1325254 D Citrate synthase; catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate; the rate-limiting enzyme of the TCA cycle; nuclear encoded mitochondrial protein; CIT1 has a paralog, CIT2, that arose from the whole genome duplication; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_function: GO:0004108 - citrate (Si)-synthase activity [Evidence IEA,IEA]; GO_function: GO:0004108 - citrate (Si)-synthase activity [Evidence IDA,IMP] [PMID 17570335]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0046912 - transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer [Evidence IEA]; GO_process: GO:0046356 - acetyl-CoA catabolic process [Evidence IDA,IMP] [PMID 17570335]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006101 - citrate metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; citrate (Si)-synthase CIT1 1324349..1325254 Sugiyamaella lignohabitans 30036213 AWJ20_4117 CDS AWJ20_4117 NC_031671.1 1326740 1327636 R uncharacterized protein complement(1326740..1327636) Sugiyamaella lignohabitans 30036214 AWJ20_4118 CDS ILS1 NC_031671.1 1332449 1335502 R Cytoplasmic isoleucine-tRNA synthetase; target of the G1-specific inhibitor reveromycin A; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 7619074]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence IDA] [PMID 7619074]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence IDA] [PMID 782885]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IDA] [PMID 782885]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; isoleucine--tRNA ligase ILS1 complement(1332449..1335502) Sugiyamaella lignohabitans 30036215 AWJ20_4119 CDS AWJ20_4119 NC_031671.1 1336438 1338888 R uncharacterized protein complement(1336438..1338888) Sugiyamaella lignohabitans 30036216 AWJ20_4120 CDS DOP1 NC_031671.1 1347097 1352190 D Golgi-localized, leucine-zipper domain containing protein; involved in endosome to Golgi transport, organization of the ER, establishing cell polarity, and morphogenesis; detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 20477991]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16301316]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IMP] [PMID 16301316]; GO_process: GO:0000902 - cell morphogenesis [Evidence IMP,ISS] [PMID 10931277]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IMP] [PMID 16301316]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Dop1p 1347097..1352190 Sugiyamaella lignohabitans 30036218 AWJ20_4121 CDS MTQ2 NC_031671.1 1352554 1353240 R S-adenosylmethionine-dependent methyltransferase; subunit of complex with Trm112p that methylates translation release factor Sup45p (eRF1) in the ternary complex eRF1-eRF3-GTP; similar to E.coli PrmC; member of the seven beta-strand family; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0035657 - eRF1 methyltransferase complex [Evidence IPI] [PMID 17008308]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA,IMP] [PMID 16321977]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0008276 - protein methyltransferase activity [Evidence IEA]; GO_function: GO:0008276 - protein methyltransferase activity [Evidence IDA] [PMID 15509572]; GO_function: GO:0008276 - protein methyltransferase activity [Evidence IDA] [PMID 17008308]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0018364 - peptidyl-glutamine methylation [Evidence IDA] [PMID 15509572]; GO_process: GO:0018364 - peptidyl-glutamine methylation [Evidence IDA] [PMID 17008308]; GO_process: GO:0006417 - regulation of translation [Evidence IDA] [PMID 15509572]; GO_process: GO:0006417 - regulation of translation [Evidence IDA] [PMID 16321977]; Mtq2p complement(1352554..1353240) Sugiyamaella lignohabitans 30036219 AWJ20_4122 CDS CLF1 NC_031671.1 1354688 1356763 D Member of the NineTeen Complex (NTC); this complex contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs; homolog of Drosophila crooked neck protein; interacts with U1 snRNP proteins; GO_component: GO:0000974 - Prp19 complex [Evidence IDA] [PMID 11842115]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 11842115]; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0071008 - U2-type post-mRNA release spliceosomal complex [Evidence IDA] [PMID 11105756]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 11105756]; GO_component: GO:0000785 - chromatin [Evidence IDA] [PMID 11973290]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11973290]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 11973290]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 11105756]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 11842115]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IC] [PMID 11105756]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP,IPI] [PMID 11973290]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000354 - cis assembly of pre-catalytic spliceosome [Evidence IMP,IPI] [PMID 10445879]; GO_process: GO:0000354 - cis assembly of pre-catalytic spliceosome [Evidence IMP] [PMID 12509417]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Clf1p 1354688..1356763 Sugiyamaella lignohabitans 30036220 AWJ20_4123 CDS MSL5 NC_031671.1 1356988 1358946 R Component of commitment complex; which defines first step in splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000243 - commitment complex [Evidence IDA] [PMID 10376880]; GO_component: GO:0000243 - commitment complex [Evidence IDA] [PMID 9150140]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0045131 - pre-mRNA branch point binding [Evidence IDA] [PMID 9182766]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 9182766]; Msl5p complement(1356988..1358946) Sugiyamaella lignohabitans 30036221 AWJ20_4124 CDS AWJ20_4124 NC_031671.1 1360872 1363469 R uncharacterized protein complement(1360872..1363469) Sugiyamaella lignohabitans 30036222 AWJ20_4125 CDS AIM14 NC_031671.1 1364083 1366059 R NADPH oxidase localized to the perinuclear ER; produces superoxide from NADPH; overexpression causes MCA1 dependent apoptosis; likely involved in superoxide-mediated regulation of the actin cytoskeleton; member of a conserved superfamily of NADPH oxidases (NOX enzymes); has similarity to iron/copper reductases (FRE1-8), particularly Fre8p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 10341420]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0097038 - perinuclear endoplasmic reticulum [Evidence IDA] [PMID 22586098]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IMP] [PMID 22586098]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016722 - oxidoreductase activity, oxidizing metal ions [Evidence ISA] [PMID 10341420]; GO_function: GO:0016175 - superoxide-generating NADPH oxidase activity [Evidence IMP] [PMID 22586098]; GO_process: GO:0006915 - apoptotic process [Evidence IGI] [PMID 22586098]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0032956 - regulation of actin cytoskeleton organization [Evidence IMP] [PMID 22586098]; Aim14p complement(1364083..1366059) Sugiyamaella lignohabitans 30036223 AWJ20_4126 CDS AWJ20_4126 NC_031671.1 1366833 1367672 R uncharacterized protein complement(1366833..1367672) Sugiyamaella lignohabitans 30036224 AWJ20_4127 CDS CFT2 NC_031671.1 1367969 1370653 R Subunit of the mRNA cleavage and polyadenlylation factor (CPF); required for pre-mRNA cleavage, polyadenylation and poly(A) site recognition, 43% similarity with the mammalian CPSF-100 protein; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IEA]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 10523662]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 9099738]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IPI] [PMID 9099738]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IEA]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Cft2p complement(1367969..1370653) Sugiyamaella lignohabitans 30036225 AWJ20_4128 CDS OYE3 NC_031671.1 1372690 1373892 R Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN); homologous to Oye2p with different ligand binding and catalytic properties; has potential roles in oxidative stress response and programmed cell death; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IDA,ISS] [PMID 7836424]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0018548 - pentaerythritol trinitrate reductase activity [Evidence IEA]; GO_function: GO:0052690 - trichloro-p-hydroquinone reductive dehalogenase activity [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17897954]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Oye3p complement(join(1372690..1373263,1373360..1373892)) Sugiyamaella lignohabitans 30036226 AWJ20_4129 CDS AWJ20_4129 NC_031671.1 1374746 1375558 D uncharacterized protein 1374746..1375558 Sugiyamaella lignohabitans 30036227 AWJ20_4130 CDS AWJ20_4130 NC_031671.1 1376241 1377467 D PT repeat family protein 1376241..1377467 Sugiyamaella lignohabitans 30036229 AWJ20_4131 CDS MGM1 NC_031671.1 1378147 1381095 R Mitochondrial GTPase, present in complex with Ugo1p and Fzo1p; required for mitochondrial morphology, fusion, and genome maintenance; exists as long and short form with different distributions; ratio of long to short forms is regulated by Psd1p; homolog of human OPA1 involved in autosomal dominant optic atrophy; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 11038181]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031304 - intrinsic component of mitochondrial inner membrane [Evidence IDA] [PMID 19505460]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030061 - mitochondrial crista [Evidence IDA] [PMID 19505460]; GO_component: GO:0097002 - mitochondrial inner boundary membrane [Evidence IDA] [PMID 19505460]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 11038181]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 12707284]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISA] [PMID 11038181]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0061025 - membrane fusion [Evidence IDA] [PMID 22977249]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IDA] [PMID 12566426]; GO_process: GO:0008053 - mitochondrial fusion [Evidence IMP,IPI] [PMID 12808034]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 1532158]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 15125685]; dynamin-related GTPase MGM1 complement(1378147..1381095) Sugiyamaella lignohabitans 30036230 AWJ20_4132 CDS AWJ20_4132 NC_031671.1 1382685 1384100 D uncharacterized protein 1382685..1384100 Sugiyamaella lignohabitans 30036231 AWJ20_4133 CDS GSY1 NC_031671.1 1386707 1388764 D Glycogen synthase; expression induced by glucose limitation, nitrogen starvation, environmental stress, and entry into stationary phase; GSY1 has a paralog, GSY2, that arose from the whole genome duplication; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004373 - glycogen (starch) synthase activity [Evidence IEA,IEA]; GO_function: GO:0004373 - glycogen (starch) synthase activity [Evidence IDA] [PMID 2123485]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IGI,IMP,ISS] [PMID 1908457]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; glycogen (starch) synthase GSY1 1386707..1388764 Sugiyamaella lignohabitans 30036232 AWJ20_4135 CDS AWJ20_4135 NC_031671.1 1396034 1396909 D Epoxide hydrolase; member of the alpha/beta hydrolase fold family; may have a role in detoxification of epoxides; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004301 - epoxide hydrolase activity [Evidence IDA,ISS] [PMID 15769598]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009636 - response to toxic substance [Evidence ISS] [PMID 15769598]; epoxide hydrolase 1396034..1396909 Sugiyamaella lignohabitans 30036234 AWJ20_4136 CDS YHM2 NC_031671.1 1398757 1399701 D Citrate and oxoglutarate carrier protein; exports citrate from and imports oxoglutarate into the mitochondrion, causing net export of NADPH reducing equivalents; also associates with mt nucleoids and has a role in replication and segregation of the mt genome; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 9559855]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 9742088]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 20371607]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 9742088]; GO_function: GO:0005371 - tricarboxylate secondary active transmembrane transporter activity [Evidence IDA] [PMID 20371607]; GO_function: GO:0005371 - tricarboxylate secondary active transmembrane transporter activity [Evidence IDA] [PMID 9559855]; GO_process: GO:0015742 - alpha-ketoglutarate transport [Evidence IDA] [PMID 20371607]; GO_process: GO:0006843 - mitochondrial citrate transport [Evidence IDA] [PMID 20371607]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI,IMP] [PMID 9742088]; GO_process: GO:0006842 - tricarboxylic acid transport [Evidence IDA] [PMID 9559855]; Yhm2p 1398757..1399701 Sugiyamaella lignohabitans 30036235 AWJ20_4137 CDS ATP10 NC_031671.1 1399906 1400814 R Assembly factor for the F0 sector of mitochondrial F1F0 ATP synthase; mitochondrial inner membrane protein; interacts genetically with ATP6; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0032592 - integral component of mitochondrial membrane [Evidence IDA] [PMID 2141026]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IPI] [PMID 14998992]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 22842922]; GO_function: GO:0051082 - unfolded protein binding [Evidence IPI] [PMID 14998992]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IEA]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IMP,IPI] [PMID 14998992]; Atp10p complement(1399906..1400814) Sugiyamaella lignohabitans 30036236 AWJ20_4138 CDS SGS1 NC_031671.1 1404245 1405591 D ATP-dependent DNA helicase SGS1 1404245..1405591 Sugiyamaella lignohabitans 30036237 AWJ20_4139 CDS LOS1 NC_031671.1 1406419 1409358 R Nuclear pore protein; involved in nuclear export of pre-tRNA and in re-export of mature tRNAs after their retrograde import from the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18045534]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0016363 - nuclear matrix [Evidence IDA] [PMID 8366091]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IDA] [PMID 9774653]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence TAS] [PMID 11959996]; GO_process: GO:0006409 - tRNA export from nucleus [Evidence IMP] [PMID 9802895]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0071528 - tRNA re-export from nucleus [Evidence IGI] [PMID 20032305]; GO_process: GO:0006810 - transport [Evidence IEA]; Los1p complement(1406419..1409358) Sugiyamaella lignohabitans 30036238 AWJ20_4140 CDS DPH5 NC_031671.1 1411712 1412611 D Methyltransferase required for synthesis of diphthamide; diphthamide is a modified histidine residue of translation elongation factor 2 (Eft1p or Eft2p); not essential for viability; GFP-Dph5p fusion protein localizes to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004164 - diphthine synthase activity [Evidence IEA,IEA]; GO_function: GO:0004164 - diphthine synthase activity [Evidence IMP] [PMID 1508200]; GO_function: GO:0004164 - diphthine synthase activity [Evidence IDA] [PMID 3042777]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA,IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 1508200]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IDA] [PMID 3042777]; diphthine synthase 1411712..1412611 Sugiyamaella lignohabitans 30036240 AWJ20_4141 CDS MRPL40 NC_031671.1 1412876 1413778 R Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL40 complement(1412876..1413778) Sugiyamaella lignohabitans 30036241 AWJ20_4142 CDS AWJ20_4142 NC_031671.1 1414333 1416297 D uncharacterized protein 1414333..1416297 Sugiyamaella lignohabitans 30036242 AWJ20_4143 CDS ILV6 NC_031671.1 1416983 1417936 R Regulatory subunit of acetolactate synthase; acetolactate synthase catalyzes the first step of branched-chain amino acid biosynthesis; enhances activity of the Ilv2p catalytic subunit, localizes to mitochondria; GO_component: GO:0005948 - acetolactate synthase complex [Evidence IDA] [PMID 10213630]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003984 - acetolactate synthase activity [Evidence IEA]; GO_function: GO:0003984 - acetolactate synthase activity [Evidence IDA] [PMID 8972574]; GO_function: GO:0016597 - amino acid binding [Evidence IEA]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IDA] [PMID 8972574]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IDA,ISS] [PMID 8972574]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009099 - valine biosynthetic process [Evidence IEA]; acetolactate synthase regulatory subunit complement(1416983..1417936) Sugiyamaella lignohabitans 30036243 AWJ20_4144 CDS AWJ20_4144 NC_031671.1 1425014 1425928 R uncharacterized protein complement(1425014..1425928) Sugiyamaella lignohabitans 30036244 AWJ20_4145 CDS AWJ20_4145 NC_031671.1 1427357 1428469 D uncharacterized protein 1427357..1428469 Sugiyamaella lignohabitans 30036245 AWJ20_4146 CDS SRP1 NC_031671.1 1429049 1430683 R Karyopherin alpha homolog; forms a dimer with karyopherin beta Kap95p to mediate import of nuclear proteins, binds the nuclear localization signal of the substrate during import; involved in cotranslational protein degradation; binds ribosome-bound nascent polypeptides; Srp1p and Sts1p couple proteasomes to nascent polypeptides emerging from the ribosome for cotranslational degradation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10725229]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10725229]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 7622450]; GO_process: GO:0006606 - protein import into nucleus [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 19141610]; GO_process: GO:0006612 - protein targeting to membrane [Evidence IMP] [PMID 16929305]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; karyopherin alpha complement(1429049..1430683) Sugiyamaella lignohabitans 30036246 AWJ20_4148 CDS SSA3 NC_031671.1 1434267 1436228 D ATPase involved in protein folding and the response to stress; plays a role in SRP-dependent cotranslational protein-membrane targeting and translocation; member of the heat shock protein 70 (HSP70) family; localized to the cytoplasm; SSA3 has a paralog, SSA4, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 10745074]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IGI] [PMID 3302682]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 8151709]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence ISS] [PMID 8151709]; GO_function: GO:0051082 - unfolded protein binding [Evidence IGI] [PMID 9789005]; GO_process: GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation [Evidence IMP] [PMID 8754838]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 24855027]; GO_process: GO:0006457 - protein folding [Evidence IGI] [PMID 9789005]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp70 family ATPase SSA3 1434267..1436228 Sugiyamaella lignohabitans 30036248 AWJ20_4149 CDS GST1 NC_031671.1 1437211 1437855 D EFY87247|glutathione S-transferase [Metarhizium acridum CQMa 102]; glutathione S-transferase 1437211..1437855 Sugiyamaella lignohabitans 30036249 AWJ20_4150 CDS PMR1 NC_031671.1 1438159 1441302 R High affinity Ca2+/Mn2+ P-type ATPase; required for Ca2+ and Mn2+ transport into Golgi; involved in Ca2+ dependent protein sorting and processing; D53A mutant (Mn2+ transporting) is rapamycin sensitive, Q783A mutant (Ca2+ transporting) is rapamycin resistant; Mn2+ transport into Golgi lumen appears to be required for rapamycin sensitivity; mutations in human homolog ATP2C1 cause acantholytic skin condition Hailey-Hailey disease; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 24124599]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 9092527]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 10545175]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IEA,IEA]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IDA,IMP] [PMID 10545175]; GO_function: GO:0005388 - calcium-transporting ATPase activity [Evidence IMP] [PMID 1379856]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0015410 - manganese-transporting ATPase activity [Evidence IDA] [PMID 10801856]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA,IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IDA,IMP] [PMID 10545175]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IGI] [PMID 23569283]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 1379856]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006828 - manganese ion transport [Evidence IDA] [PMID 10801856]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ca(2+)/Mn(2+)-transporting P-type ATPase PMR1 complement(1438159..1441302) Sugiyamaella lignohabitans 30036251 AWJ20_4151 CDS RNT1 NC_031671.1 1445320 1446903 R Nuclear dsRNA-specific ribonuclease (RNase III); involved in rDNA transcription, rRNA processing and U2 snRNA 3' end formation by cleavage of a stem-loop structure at the 3' end of U2 snRNA; involved in polyadenylation-independent transcription termination; involved in the cell wall stress response, regulating the degradation of cell wall integrity and morphogenesis checkpoint genes; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15090619]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15090619]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IEA,IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IDA] [PMID 15766245]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA,IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0034473 - U1 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034963 - box C/D snoRNA processing [Evidence IMP] [PMID 23201338]; GO_process: GO:0034964 - box H/ACA snoRNA processing [Evidence IMP] [PMID 23201338]; GO_process: GO:0006325 - chromatin organization [Evidence IMP] [PMID 17991894]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA,IMP] [PMID 17158880]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 17991894]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 17991894]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 22576366]; GO_process: GO:0030847 - termination of RNA polymerase II transcription, exosome-dependent [Evidence IDA,IMP,IPI] [PMID 19818713]; Rnt1p complement(1445320..1446903) Sugiyamaella lignohabitans 30036252 AWJ20_4152 CDS AWJ20_4152 NC_031671.1 1447379 1448014 D uncharacterized protein 1447379..1448014 Sugiyamaella lignohabitans 30036253 AWJ20_4153 CDS CUS1 NC_031671.1 1448080 1449990 R Protein required for assembly of U2 snRNP into the spliceosome; forms a complex with Hsh49p and Hsh155p; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 15565172]; GO_component: GO:0005686 - U2 snRNP [Evidence IDA] [PMID 16314500]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 16314500]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IDA] [PMID 8566755]; Cus1p complement(1448080..1449990) Sugiyamaella lignohabitans 30036254 AWJ20_4154 CDS RRG7 NC_031671.1 1452400 1453398 D hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion; deletion confers sensitivity to 4-(N-(S-glutathionylacetyl)amino) phenylarsenoxide (GSAO); YOR305W is not an essential gene; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Rrg7p 1452400..1453398 Sugiyamaella lignohabitans 30036255 AWJ20_4155 CDS AAF1 NC_031671.1 1454121 1455590 R adhesion and aggregation factor identified by ability to make transformed S. cerevisiae clump and stick to polystyrene beads; adhesion and aggregation factor complement(1454121..1455590) Sugiyamaella lignohabitans 30036256 AWJ20_4156 CDS UBA2 NC_031671.1 1460556 1462088 D Subunit of heterodimeric nuclear SUMO activating enzyme E1 with Aos1p; activates Smt3p (SUMO) before its conjugation to proteins (sumoylation), which may play a role in protein targeting; essential for viability; GO_component: GO:0031510 - SUMO activating enzyme complex [Evidence IPI] [PMID 9312010]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 7629121]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019948 - SUMO activating enzyme activity [Evidence IDA,IMP] [PMID 9312010]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008641 - small protein activating enzyme activity [Evidence IEA]; GO_process: GO:0006464 - cellular protein modification process [Evidence IEA]; GO_process: GO:0016925 - protein sumoylation [Evidence IEA]; GO_process: GO:0016925 - protein sumoylation [Evidence IDA,IMP] [PMID 9312010]; E1 ubiquitin-activating protein UBA2 1460556..1462088 Sugiyamaella lignohabitans 30036257 AWJ20_4157 CDS GAA1 NC_031671.1 1462299 1464053 R Subunit of the GPI:protein transamidase complex; removes the GPI-anchoring signal and attaches GPI (glycosylphosphatidylinositol) to proteins in the ER; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IEA]; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IDA] [PMID 11598210]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003923 - GPI-anchor transamidase activity [Evidence IC] [PMID 11598210]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IMP] [PMID 11598210]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IMP] [PMID 7730400]; Gaa1p complement(1462299..1464053) Sugiyamaella lignohabitans 30036258 AWJ20_4158 CDS AWJ20_4158 NC_031671.1 1465423 1465950 D uncharacterized protein 1465423..1465950 Sugiyamaella lignohabitans 30036259 AWJ20_4159 CDS VPS17 NC_031671.1 1466276 1468165 R Subunit of the membrane-associated retromer complex; essential for endosome-to-Golgi retrograde protein transport; peripheral membrane protein that assembles onto the membrane with Vps5p to promote vesicle formation; required for recruiting the retromer complex to the endosome membranes; GO_component: GO:0012505 - endomembrane system [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IPI] [PMID 9700157]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030905 - retromer complex, outer shell [Evidence IPI] [PMID 9700157]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps17p complement(1466276..1468165) Sugiyamaella lignohabitans 30036260 AWJ20_4160 CDS AWJ20_4160 NC_031671.1 1468843 1470993 R uncharacterized protein complement(1468843..1470993) Sugiyamaella lignohabitans 30036262 AWJ20_4161 CDS NPL6 NC_031671.1 1472082 1474418 D Component of the RSC chromatin remodeling complex; interacts with Rsc3p, Rsc30p, Ldb7p, and Htl1p to form a module important for a broad range of RSC functions; involved in nuclear protein import and maintenance of proper telomere length; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 14729968]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 12183366]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12482937]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IC] [PMID 14729968]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 2556404]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Npl6p 1472082..1474418 Sugiyamaella lignohabitans 30036263 AWJ20_4162 CDS AWJ20_4162 NC_031671.1 1475446 1476018 D uncharacterized protein 1475446..1476018 Sugiyamaella lignohabitans 30036264 AWJ20_4163 CDS YOR1 NC_031671.1 1476588 1480496 R Plasma membrane ATP-binding cassette (ABC) transporter; multidrug transporter mediates export of many different organic anions including oligomycin; homolog of human cystic fibrosis transmembrane receptor (CFTR); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9575223]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008559 - xenobiotic-transporting ATPase activity [Evidence IDA,IMP] [PMID 23270647]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042908 - xenobiotic transport [Evidence IDA,IMP] [PMID 23270647]; ATP-binding cassette transporter YOR1 complement(1476588..1480496) Sugiyamaella lignohabitans 30036265 AWJ20_4164 CDS AWJ20_4164 NC_031671.1 1486231 1487604 D uncharacterized protein 1486231..1487604 Sugiyamaella lignohabitans 30036266 AWJ20_4165 CDS AWJ20_4165 NC_031671.1 1487990 1489969 D Neurospora crassa e-Compendium ncu10311.3; CBS/PB1 domain-containing protein 1487990..1489969 Sugiyamaella lignohabitans 30036267 AWJ20_4166 CDS AWJ20_4166 NC_031671.1 1490178 1490930 R uncharacterized protein complement(1490178..1490930) Sugiyamaella lignohabitans 30036268 AWJ20_4167 CDS FRE5 NC_031671.1 1492457 1493227 R Putative ferric reductase with similarity to Fre2p; expression induced by low iron levels; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence ISA] [PMID 9726978]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre5p complement(1492457..1493227) Sugiyamaella lignohabitans 30036269 AWJ20_4168 CDS FMS1 NC_031671.1 1495214 1496527 D Polyamine oxidase; converts spermine to spermidine, which is required for the essential hypusination modification of translation factor eIF-5A; also involved in pantothenic acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0052904 - N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [Evidence IEA]; GO_function: GO:0052903 - N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0046592 - polyamine oxidase activity [Evidence IMP] [PMID 11154694]; GO_function: GO:0046592 - polyamine oxidase activity [Evidence IDA] [PMID 21067138]; GO_function: GO:0052902 - spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity [Evidence IEA]; GO_function: GO:0052901 - spermine:oxygen oxidoreductase (spermidine-forming) activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IMP] [PMID 11154694]; GO_process: GO:0006598 - polyamine catabolic process [Evidence IGI,IMP] [PMID 12586697]; polyamine oxidase 1495214..1496527 Sugiyamaella lignohabitans 30036270 AWJ20_4169 CDS AAH1 NC_031671.1 1496890 1497945 D Adenine deaminase (adenine aminohydrolase); converts adenine to hypoxanthine; involved in purine salvage; transcriptionally regulated by nutrient levels and growth phase; Aah1p degraded upon entry into quiescence via SCF and the proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IBA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0000034 - adenine deaminase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0000034 - adenine deaminase activity [Evidence IDA,IMP] [PMID 1577682]; GO_function: GO:0019239 - deaminase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006146 - adenine catabolic process [Evidence IEA,IEA]; GO_process: GO:0006146 - adenine catabolic process [Evidence IDA,IMP] [PMID 1577682]; GO_process: GO:0043103 - hypoxanthine salvage [Evidence IEA]; GO_process: GO:0043103 - hypoxanthine salvage [Evidence IDA,IMP] [PMID 1577682]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IEA]; GO_process: GO:0009168 - purine ribonucleoside monophosphate biosynthetic process [Evidence IEA]; GO_process: GO:0043101 - purine-containing compound salvage [Evidence IDA,IMP] [PMID 1577682]; adenine deaminase 1496890..1497945 Sugiyamaella lignohabitans 30036271 AWJ20_4170 CDS DSE4 NC_031671.1 1498159 1500495 R Daughter cell-specific secreted protein with similarity to glucanases; degrades cell wall from the daughter side causing daughter to separate from mother; GO_component: GO:0030428 - cell septum [Evidence IDA] [PMID 12455695]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0005576 - extracellular region [Evidence ISS] [PMID 11747810]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11935221]; GO_function: GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity [Evidence IGI] [PMID 12455695]; GO_function: GO:0052861 - glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group [Evidence IEA,IEA]; GO_function: GO:0052862 - glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_process: GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IEP,ISS] [PMID 11747810]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 16328626]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Dse4p complement(1498159..1500495) Sugiyamaella lignohabitans 30036273 AWJ20_4171 CDS ITR2 NC_031671.1 1501640 1503223 D Myo-inositol transporter; member of the sugar transporter superfamily; expressed constitutively; ITR2 has a paralog, ITR1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 2040626]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16233524]; GO_function: GO:0005365 - myo-inositol transmembrane transporter activity [Evidence IMP,ISS] [PMID 2040626]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015798 - myo-inositol transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; myo-inositol transporter ITR2 1501640..1503223 Sugiyamaella lignohabitans 30036274 AWJ20_4172 CDS AWJ20_4172 NC_031671.1 1504609 1505151 R Uncharacterized protein complement(1504609..1505151) Sugiyamaella lignohabitans 30036275 AWJ20_4173 CDS AWJ20_4173 NC_031671.1 1505987 1506469 D uncharacterized protein 1505987..1506469 Sugiyamaella lignohabitans 30036276 AWJ20_4174 CDS AWJ20_4174 NC_031671.1 1506713 1507192 D uncharacterized protein 1506713..1507192 Sugiyamaella lignohabitans 30036277 AWJ20_4175 CDS TLG1 NC_031671.1 1507616 1508338 D Essential t-SNARE that mediates fusion of vesicles with the late Golgi; forms a complex with Tlg2p and Vti1p; mediates fusion of endosome-derived vesicles with the late Golgi; binds the docking complex VFT (Vps fifty-three) through interaction with Vps51p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0031201 - SNARE complex [Evidence IPI] [PMID 10397773]; GO_component: GO:0031901 - early endosome membrane [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 9427746]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 15973437]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 14981247]; GO_process: GO:0048193 - Golgi vesicle transport [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 9427746]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11739407]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Tlg1p 1507616..1508338 Sugiyamaella lignohabitans 30036278 AWJ20_4176 CDS TDA3 NC_031671.1 1509559 1511221 D Putative oxidoreductase involved in late endosome to Golgi transport; physical and genetical interactions with Btn2p; null mutant is viable, has extended S phase, and sensitive to expression of top1-T722A allele; similar to human FOXRED1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21441304]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005770 - late endosome [Evidence IEA]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 21441304]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IGI,IMP,IPI] [PMID 21441304]; GO_process: GO:0006810 - transport [Evidence IEA]; Tda3p join(1509559..1509592,1509942..1511221) Sugiyamaella lignohabitans 30036279 AWJ20_4177 CDS YEN1 NC_031671.1 1511744 1513945 D Holliday junction resolvase; promotes template switching during break-induced replication (BIR), causing non-reciprocal translocations (NRTs); localization is cell-cycle dependent and regulated by Cdc28p phosphorylation; homolog of human GEN1; similar to S. cerevisiae endonuclease Rth1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19520826]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19520826]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IDA,IMP] [PMID 19020614]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA,IEA]; GO_function: GO:0000014 - single-stranded DNA endodeoxyribonuclease activity [Evidence ISS] [PMID 9683672]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI] [PMID 20106725]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI] [PMID 20106725]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA,IEA]; Yen1p 1511744..1513945 Sugiyamaella lignohabitans 30036280 AWJ20_4178 CDS PKH2 NC_031671.1 1514140 1517022 R serine/threonine protein kinase PKH2 complement(1514140..1517022) Sugiyamaella lignohabitans 30036281 AWJ20_4182 CDS PRC1 NC_031671.1 1522443 1524062 R Vacuolar carboxypeptidase Y (proteinase C, CPY); broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IDA,IMP] [PMID 8679540]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IDA,IMP] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence TAS] [PMID 8789256]; carboxypeptidase C PRC1 complement(1522443..1524062) Sugiyamaella lignohabitans 30036286 AWJ20_4183 CDS WSS1 NC_031671.1 1524537 1525598 R Sumoylated protein localizing to the nuclear periphery of mother cells; localizes to a single spot on the nuclear periphery of mother cells but not daughters; interacts genetically with SMT3; UV-sensitive mutant phenotype and genetic interactions suggest a role in the DNA damage response; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 18336552]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI] [PMID 15598824]; GO_process: GO:0016925 - protein sumoylation [Evidence IGI] [PMID 11606525]; GO_process: GO:0010224 - response to UV-B [Evidence IMP] [PMID 11606770]; GO_process: GO:0010224 - response to UV-B [Evidence IMP] [PMID 15598824]; GO_process: GO:0010225 - response to UV-C [Evidence IMP] [PMID 11606770]; GO_process: GO:0010225 - response to UV-C [Evidence IMP] [PMID 15598824]; Wss1p complement(1524537..1525598) Sugiyamaella lignohabitans 30036287 AWJ20_4184 CDS ESP1 NC_031671.1 1526916 1531667 D Separase, a caspase-like cysteine protease; promotes sister chromatid separation by mediating dissociation of the cohesin Scc1p from chromatin; inhibits protein phosphatase 2A-Cdc55p to promote mitotic exit; inhibited by Pds1p; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11149918]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11149918]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005819 - spindle [Evidence IDA] [PMID 11149918]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_function: GO:0004197 - cysteine-type endopeptidase activity [Evidence IDA] [PMID 11081625]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA,IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 18321989]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP,IPI] [PMID 9635435]; GO_process: GO:0034048 - negative regulation of protein phosphatase type 2A activity [Evidence IMP,IPI] [PMID 16713564]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence IGI,IPI] [PMID 12598903]; GO_process: GO:0032888 - regulation of mitotic spindle elongation [Evidence IGI,IMP] [PMID 18430955]; Esp1p 1526916..1531667 Sugiyamaella lignohabitans 30036288 AWJ20_4185 CDS AWJ20_4185 NC_031671.1 1533011 1533751 D uncharacterized protein 1533011..1533751 Sugiyamaella lignohabitans 30036289 AWJ20_4186 CDS NNF2 NC_031671.1 1533937 1536861 R Protein that exhibits physical and genetic interactions with Rpb8p; Rpb8p is a subunit of RNA polymerases I, II, and III; computational analysis of large-scale protein-protein interaction data suggests a role in chromosome segregation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Nnf2p complement(1533937..1536861) Sugiyamaella lignohabitans 30036290 AWJ20_4187 CDS MRI1 NC_031671.1 1538362 1539468 D 5'-methylthioribose-1-phosphate isomerase; catalyzes the isomerization of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate in the methionine salvage pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IEA,IEA]; GO_function: GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IDA,ISS] [PMID 15215245]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_process: GO:0019284 - L-methionine biosynthetic process from S-adenosylmethionine [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 15215245]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 18625006]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0044249 - cellular biosynthetic process [Evidence IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; S-methyl-5-thioribose-1-phosphate isomerase MRI1 1538362..1539468 Sugiyamaella lignohabitans 30036291 AWJ20_4188 CDS MNN2 NC_031671.1 1539663 1541465 R Alpha-1,2-mannosyltransferase; responsible for addition of the first alpha-1,2-linked mannose to form the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 9756928]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IMP] [PMID 9756928]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 9756928]; Mnn2p complement(1539663..1541465) Sugiyamaella lignohabitans 30036292 AWJ20_4189 CDS PFS2 NC_031671.1 1543032 1544435 D Integral subunit of the pre-mRNA CPF complex; the cleavage and polyadenylation factor (CPF) complex plays an essential role in mRNA 3'-end formation by bridging different processing factors and thereby promoting the assembly of the processing complex; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IC] [PMID 12819204]; GO_process: GO:0006379 - mRNA cleavage [Evidence IMP] [PMID 10619842]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IMP] [PMID 10619842]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Pfs2p 1543032..1544435 Sugiyamaella lignohabitans 30036293 AWJ20_4190 CDS SEY1 NC_031671.1 1544617 1547094 R Dynamin-like GTPase that mediates homotypic ER fusion; has a role in ER morphology; interacts physically and genetically with Yop1p and Rtn1p; functional ortholog of the human atlastin ATL1, defects in which cause a form of the human disease hereditary spastic paraplegia; homolog of Arabidopsis RHD3; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 19665976]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 19665976]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 19665976]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IGI] [PMID 19665976]; GO_process: GO:0016320 - endoplasmic reticulum membrane fusion [Evidence IDA,IGI,IMP] [PMID 22508509]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IEA]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IGI,IGI] [PMID 19665976]; GO_process: GO:0007029 - endoplasmic reticulum organization [Evidence IGI] [PMID 22508509]; GO_process: GO:0061024 - membrane organization [Evidence IGI] [PMID 12427979]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; dynamin-like GTPase SEY1 complement(1544617..1547094) Sugiyamaella lignohabitans 30036295 AWJ20_4191 CDS SYG1 NC_031671.1 1547054 1551624 D Plasma membrane hypothetical protein; truncation and overexpression suppresses lethality of G-alpha protein deficiency; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 7592711]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 7592711]; Syg1p join(1547054..1547227,1548541..1551624) Sugiyamaella lignohabitans 30036296 AWJ20_4192 CDS BGL7 NC_031671.1 1551661 1553379 R top hit is XP_007344833.1 originated in Auricularia delicata TFB-10046 SS5; beta-glucosidase complement(1551661..1553379) Sugiyamaella lignohabitans 30036297 AWJ20_4193 CDS AWJ20_4193 NC_031671.1 1553632 1554654 D uncharacterized protein 1553632..1554654 Sugiyamaella lignohabitans 30036298 AWJ20_4194 CDS NEO1 NC_031671.1 1554707 1558006 R Putative aminophospholipid translocase (flippase); involved in endocytosis and vacuolar biogenesis; localizes to endosomes and the Golgi aparatus; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 15314152]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 12960419]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 15314152]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence ISS] [PMID 9224683]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence ISS] [PMID 12221123]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 15314152]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IEA,IEA]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 12960419]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 15314152]; putative aminophospholipid-translocating P4-type ATPase NEO1 complement(1554707..1558006) Sugiyamaella lignohabitans 30036299 AWJ20_4195 CDS MED4 NC_031671.1 1558693 1559688 D Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 9420330]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Med4p 1558693..1559688 Sugiyamaella lignohabitans 30036300 AWJ20_4196 CDS AWJ20_4196 NC_031671.1 1560132 1560809 D uncharacterized protein 1560132..1560809 Sugiyamaella lignohabitans 30036301 AWJ20_4197 CDS AWJ20_4197 NC_031671.1 1561016 1561906 R uncharacterized protein complement(1561016..1561906) Sugiyamaella lignohabitans 30036302 AWJ20_4198 CDS TIM23 NC_031671.1 1563974 1564591 R Essential component of the TIM23 complex; involved in protein import into mitochondrial matrix and inner membrane; with Tim17p, contributes to architecture and function of the import channel; TIM23 complex is short for the translocase of the inner mitochondrial membrane; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IEA]; GO_component: GO:0005744 - mitochondrial inner membrane presequence translocase complex [Evidence IPI] [PMID 7600576]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IEA]; GO_function: GO:0030943 - mitochondrion targeting sequence binding [Evidence IDA,IMP] [PMID 8858146]; GO_function: GO:0015266 - protein channel activity [Evidence IDA] [PMID 11713477]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 10830167]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 7600576]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; protein transporter TIM23 complement(1563974..1564591) Sugiyamaella lignohabitans 30036303 AWJ20_4199 CDS ECM38 NC_031671.1 1565329 1567344 R Gamma-glutamyltranspeptidase; major glutathione-degrading enzyme; involved in detoxification of electrophilic xenobiotics; expression induced mainly by nitrogen starvation; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 6143574]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003840 - gamma-glutamyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003840 - gamma-glutamyltransferase activity [Evidence IMP] [PMID 11672438]; GO_function: GO:0036374 - glutathione hydrolase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IMP] [PMID 11672438]; GO_process: GO:0006749 - glutathione metabolic process [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006805 - xenobiotic metabolic process [Evidence IMP] [PMID 16857395]; gamma-glutamyltransferase complement(1565329..1567344) Sugiyamaella lignohabitans 30036304 AWJ20_4200 CDS FKS1 NC_031671.1 1568266 1574097 R Catalytic subunit of 1,3-beta-D-glucan synthase; functionally redundant with alternate catalytic subunit Gsc2p; binds to regulatory subunit Rho1p; involved in cell wall synthesis and maintenance; localizes to sites of cell wall remodeling; FKS1 has a paralog, GSC2, that arose from the whole genome duplication; GO_component: GO:0000148 - 1,3-beta-D-glucan synthase complex [Evidence IEA]; GO_component: GO:0000148 - 1,3-beta-D-glucan synthase complex [Evidence IDA] [PMID 7983071]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11856368]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11856368]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8602515]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11856368]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8602515]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11856368]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17507646]; GO_function: GO:0003843 - 1,3-beta-D-glucan synthase activity [Evidence IEA,IEA]; GO_function: GO:0003843 - 1,3-beta-D-glucan synthase activity [Evidence IDA,IMP] [PMID 7528927]; GO_function: GO:0003843 - 1,3-beta-D-glucan synthase activity [Evidence IDA] [PMID 7649185]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006075 - (1->3)-beta-D-glucan biosynthetic process [Evidence IEA]; GO_process: GO:0006075 - (1->3)-beta-D-glucan biosynthetic process [Evidence IDA,IMP] [PMID 7528927]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 14593073]; GO_process: GO:0008360 - regulation of cell shape [Evidence IEA]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 17302939]; 1,3-beta-D-glucan synthase complement(1568266..1574097) Sugiyamaella lignohabitans 30036307 AWJ20_4201 CDS GAS1 NC_031671.1 1577995 1579653 D Beta-1,3-glucanosyltransferase; required for cell wall assembly and also has a role in transcriptional silencing; localizes to cell surface via a glycosylphosphatidylinositol (GPI) anchor; also found at nuclear periphery; genetic interactions with histone H3 lysine acetyltransferases GCN5 and SAS3 indicate previously unsuspected functions for Gas1 in DNA damage response and cell cycle regulation; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 18462190]; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005621 - cellular bud scar [Evidence IDA] [PMID 19793924]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 19793924]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 10716729]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 19541632]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 1824714]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19793924]; GO_component: GO:0000936 - primary cell septum [Evidence IDA] [PMID 19793924]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 10809732]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 15355340]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 17397106]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006342 - chromatin silencing [Evidence IMP,IPI] [PMID 19541632]; GO_process: GO:0030447 - filamentous growth [Evidence IMP] [PMID 15645503]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16986442]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 9515908]; 1,3-beta-glucanosyltransferase GAS1 1577995..1579653 Sugiyamaella lignohabitans 30036308 AWJ20_4202 CDS AWJ20_4202 NC_031671.1 1580570 1581457 R Protein PXR1 complement(1580570..1581457) Sugiyamaella lignohabitans 30036309 AWJ20_4203 CDS PSE1 NC_031671.1 1581844 1585425 R Karyopherin/importin that interacts with the nuclear pore complex; acts as the nuclear import receptor for specific proteins, including Pdr1p, Yap1p, Ste12p, and Aft1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9238021]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9238021]; GO_function: GO:0008139 - nuclear localization sequence binding [Evidence IDA] [PMID 11694505]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 11274141]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI] [PMID 9238021]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 16651379]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0007088 - regulation of mitosis [Evidence IMP] [PMID 14697200]; GO_process: GO:0060188 - regulation of protein desumoylation [Evidence IMP,IPI] [PMID 17403926]; GO_process: GO:0006810 - transport [Evidence IEA]; Pse1p complement(join(1581844..1584915,1585252..1585425)) Sugiyamaella lignohabitans 30036310 AWJ20_4204 CDS CNB1 NC_031671.1 1592737 1593171 R Calcineurin B; regulatory subunit of calcineurin, a Ca++/calmodulin-regulated type 2B protein phosphatase which regulates Crz1p (stress-response transcription factor); other calcineurin subunit encoded by CNA1 and/or CMP1; regulates function of Aly1p alpha-arrestin; myristoylation by Nmt1p reduces calcineurin activity in response to submaximal Ca signals, is needed to prevent constitutive phosphatase activity; protein abundance increases in response to DNA replication stress; GO_component: GO:0005955 - calcineurin complex [Evidence IPI] [PMID 10887154]; GO_component: GO:0005955 - calcineurin complex [Evidence IDA] [PMID 1321337]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence ISS] [PMID 11015619]; GO_function: GO:0004723 - calcium-dependent protein serine/threonine phosphatase activity [Evidence IDA,ISS] [PMID 1321337]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 1321337]; GO_process: GO:0006873 - cellular ion homeostasis [Evidence IMP] [PMID 8798496]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 7530227]; calcineurin regulatory subunit B complement(1592737..1593171) Sugiyamaella lignohabitans 30036311 AWJ20_4205 CDS HHF2 NC_031671.1 1596925 1597236 R Histone H4; core histone protein required for chromatin assembly and chromosome function; one of two identical histone proteins (see also HHF2); contributes to telomeric silencing; N-terminal domain involved in maintaining genomic integrity; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000788 - nuclear nucleosome [Evidence TAS] [PMID 2275823]; GO_component: GO:0000786 - nucleosome [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence TAS] [PMID 2275823]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence TAS] [PMID 2275823]; GO_process: GO:0034729 - histone H3-K79 methylation [Evidence IMP] [PMID 18158898]; GO_process: GO:0006334 - nucleosome assembly [Evidence IEA]; GO_process: GO:0043935 - sexual sporulation resulting in formation of a cellular spore [Evidence IMP] [PMID 20713519]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; histone H4 complement(1596925..1597236) Sugiyamaella lignohabitans 30036312 AWJ20_4206 CDS UBP8 NC_031671.1 1599228 1601102 D ubiquitin-specific protease UBP8 1599228..1601102 Sugiyamaella lignohabitans 30036313 AWJ20_4207 CDS AWJ20_4207 NC_031671.1 1602457 1603854 D uncharacterized protein 1602457..1603854 Sugiyamaella lignohabitans 30036314 AWJ20_4208 CDS AWJ20_4208 NC_031671.1 1605309 1606484 R uncharacterized protein complement(1605309..1606484) Sugiyamaella lignohabitans 30036315 AWJ20_4209 CDS OTU1 NC_031671.1 1607828 1608829 D Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p; may contribute to regulation of protein degradation by deubiquitylating substrates that have been ubiquitylated by Ufd2p; member of the Ovarian Tumor (OTU) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 16427015]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA] [PMID 16427015]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 15755922]; Otu1p 1607828..1608829 Sugiyamaella lignohabitans 30036316 AWJ20_4210 CDS BUD20 NC_031671.1 1609145 1609600 R C2H2-type zinc finger protein required for ribosome assembly; shuttling factor which associates with pre-60S particles in the nucleus, accompanying them to the cytoplasm; cytoplasmic dissociation of Bud20p requires Drg1p; N-terminus harbors a nuclear localization signal (NLS) and a nuclear export signal (NES); cytoplasmic Bud20p is reimported by Kap123-dependent pathway; involved in bud-site selection; diploid mutants display a random budding pattern; similar to human ZNF593; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23045392]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23212245]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11452010]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23212245]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23045392]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA,IDA] [PMID 23212245]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IDA] [PMID 23045392]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 11452010]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI,IMP] [PMID 23045392]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI,IMP] [PMID 23212245]; Bud20p complement(1609145..1609600) Sugiyamaella lignohabitans 30036318 AWJ20_4211 CDS PLP2 NC_031671.1 1611582 1612292 R Protein that interacts with the CCT complex to stimulate actin folding; has similarity to phosducins; null mutant lethality is complemented by mouse phosducin-like protein MgcPhLP; CCT is short for chaperonin containing TCP-1; essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 10749875]; GO_function: GO:0031683 - G-protein beta/gamma-subunit complex binding [Evidence IDA] [PMID 10749875]; GO_function: GO:0003779 - actin binding [Evidence IDA,IMP] [PMID 19501098]; GO_process: GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO_process: GO:0007329 - positive regulation of transcription from RNA polymerase II promoter by pheromones [Evidence IMP,IPI] [PMID 10749875]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 19501098]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; Plp2p complement(1611582..1612292) Sugiyamaella lignohabitans 30036319 AWJ20_4212 CDS LEU3 NC_031671.1 1613376 1615985 D Putative transcription factor SEF1 1613376..1615985 Sugiyamaella lignohabitans 30036320 AWJ20_4213 CDS AQY1 NC_031671.1 1622359 1623210 D Spore-specific water channel; mediates the transport of water across cell membranes, developmentally controlled; may play a role in spore maturation, probably by allowing water outflow, may be involved in freeze tolerance; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10092523]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0015250 - water channel activity [Evidence IGI,IMP,ISS] [PMID 9765289]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 15583134]; GO_process: GO:0006810 - transport [Evidence IEA,IEA,IEA]; GO_process: GO:0006833 - water transport [Evidence IMP] [PMID 9765289]; Aqy1p 1622359..1623210 Sugiyamaella lignohabitans 30036321 AWJ20_4214 CDS AWJ20_4214 NC_031671.1 1623955 1624545 D uncharacterized protein 1623955..1624545 Sugiyamaella lignohabitans 30036322 AWJ20_4216 CDS CRZ1 NC_031671.1 1628542 1630761 D DNA-binding transcription factor CRZ1 1628542..1630761 Sugiyamaella lignohabitans 30036324 AWJ20_4217 CDS TRM12 NC_031671.1 1630997 1632346 R S-adenosylmethionine-dependent methyltransferase; required for wybutosine formation in phenylalanine-accepting tRNA; member of the seven beta-strand family; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS] [PMID 12872006]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA] [PMID 16005430]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IDA] [PMID 16642040]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 16005430]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IEA]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 16642040]; GO_process: GO:0031591 - wybutosine biosynthetic process [Evidence IMP] [PMID 17150819]; Trm12p complement(1630997..1632346) Sugiyamaella lignohabitans 30036325 AWJ20_4218 CDS SOK2 NC_031671.1 1639114 1640703 R Nuclear protein that negatively regulates pseudohyphal differentiation; plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA) signal transduction pathway; relocalizes to the cytosol in response to hypoxia; SOK2 has a paralog, PHD1, that arose from the whole genome duplication; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence ISS] [PMID 8524252]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 11046133]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 8524252]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sok2p complement(1639114..1640703) Sugiyamaella lignohabitans 30036326 AWJ20_4219 CDS RBA50 NC_031671.1 1646809 1648131 R Protein involved in transcription; interacts with RNA polymerase II subunits Rpb2p, Rpb3, and Rpb11p; has similarity to human RPAP1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15282305]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rba50p complement(1646809..1648131) Sugiyamaella lignohabitans 30036327 AWJ20_4220 CDS AWJ20_4220 NC_031671.1 1651905 1653509 D uncharacterized protein 1651905..1653509 Sugiyamaella lignohabitans 30036329 AWJ20_4221 CDS AWJ20_4221 NC_031671.1 1657305 1658654 D uncharacterized protein 1657305..1658654 Sugiyamaella lignohabitans 30036330 AWJ20_4222 CDS ORC2 NC_031671.1 1658853 1660541 R Subunit of the origin recognition complex (ORC); ORC directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; interacts with Spp1p and with trimethylated histone H3; phosphorylated by Cdc28p; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0005664 - nuclear origin of replication recognition complex [Evidence IDA,IMP] [PMID 9372948]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0000808 - origin recognition complex [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 9288745]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9159120]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9288745]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 16716188]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI,IMP] [PMID 7579692]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IDA] [PMID 12897051]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 16980387]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IMP] [PMID 18845545]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; origin recognition complex subunit 2 complement(1658853..1660541) Sugiyamaella lignohabitans 30036331 AWJ20_4223 CDS THI4 NC_031671.1 1661453 1662412 R Thiazole synthase; abundant protein involved in the formation of the thiazole moiety of thiamine during thiamine biosynthesis; acts more as a co-substrate rather than an enzyme by providing the sulphur source for thiazole formation; undergoes a single turnover only; required for mitochondrial genome stability in response to DNA damaging agents; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15544818]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 16850348]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0008198 - ferrous iron binding [Evidence IDA] [PMID 22031445]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 9367751]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IMP] [PMID 7941734]; GO_process: GO:0052837 - thiazole biosynthetic process [Evidence IEA]; GO_process: GO:0052837 - thiazole biosynthetic process [Evidence IDA] [PMID 22031445]; thiamine thiazole synthase complement(1661453..1662412) Sugiyamaella lignohabitans 30036332 AWJ20_4224 CDS AWJ20_4224 NC_031671.1 1663753 1665657 R UV radiation resistance-associated gene protein complement(1663753..1665657) Sugiyamaella lignohabitans 30036333 AWJ20_4225 CDS AWJ20_4225 NC_031671.1 1668113 1668934 D uncharacterized protein 1668113..1668934 Sugiyamaella lignohabitans 30036334 AWJ20_4226 CDS SMC1 NC_031671.1 1672813 1676532 R Subunit of the multiprotein cohesin complex; essential protein involved in chromosome segregation and in double-strand DNA break repair; SMC chromosomal ATPase family member, binds DNA with a preference for DNA with secondary structure; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA,IEA]; GO_component: GO:0008278 - cohesin complex [Evidence IEA]; GO_component: GO:0034990 - nuclear mitotic cohesin complex [Evidence IDA] [PMID 9990856]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003680 - AT DNA binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 7929577]; GO_function: GO:0000217 - DNA secondary structure binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 9727028]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 11448778]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 15280507]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI] [PMID 9335333]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 8276886]; cohesin subunit SMC1 complement(1672813..1676532) Sugiyamaella lignohabitans 30036335 AWJ20_4227 CDS JLP1 NC_031671.1 1679683 1680840 D Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p 1679683..1680840 Sugiyamaella lignohabitans 30036336 AWJ20_4228 CDS PLB3 NC_031671.1 1680897 1682660 R Phospholipase B (lysophospholipase) involved in lipid metabolism; hydrolyzes phosphatidylinositol and phosphatidylserine and displays transacylase activity in vitro; PLB3 has a paralog, PLB1, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 10497163]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10497163]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IMP,ISS] [PMID 10497163]; GO_function: GO:0004620 - phospholipase activity [Evidence IEA]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IDA,IMP] [PMID 10497163]; GO_process: GO:0006660 - phosphatidylserine catabolic process [Evidence IDA,IMP] [PMID 10497163]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; Plb3p complement(1680897..1682660) Sugiyamaella lignohabitans 30036337 AWJ20_4229 CDS STP2 NC_031671.1 1683109 1685295 R Transcription factor; activated by proteolytic processing in response to signals from the SPS sensor system for external amino acids; activates transcription of amino acid permease genes; STP2 has a paralog, STP1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21127045]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 10648791]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21127045]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 11212916]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IMP] [PMID 10648791]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA,IMP] [PMID 19906648]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI,IMP,ISS] [PMID 10648791]; Stp2p complement(1683109..1685295) Sugiyamaella lignohabitans 30036338 AWJ20_4230 CDS YMD8 NC_031671.1 1690464 1692017 R Putative nucleotide sugar transporter; has similarity to Vrg4p; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005338 - nucleotide-sugar transmembrane transporter activity [Evidence ISS] [PMID 9395539]; GO_process: GO:0015786 - UDP-glucose transport [Evidence IMP] [PMID 18693752]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0015780 - nucleotide-sugar transport [Evidence ISS] [PMID 9395539]; GO_process: GO:0006810 - transport [Evidence IEA]; Ymd8p complement(1690464..1692017) Sugiyamaella lignohabitans 30036340 AWJ20_4231 CDS YPS7 NC_031671.1 1693232 1695415 D Putative GPI-anchored aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; located in the cytoplasm and endoplasmic reticulum; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps7p 1693232..1695415 Sugiyamaella lignohabitans 30036341 AWJ20_4232 CDS AWJ20_4232 NC_031671.1 1695722 1696063 R uncharacterized protein complement(1695722..1696063) Sugiyamaella lignohabitans 30036342 AWJ20_4233 CDS UGA4 NC_031671.1 1700817 1702451 D GABA (gamma-aminobutyrate) permease; serves as a GABA transport protein involved in the utilization of GABA as a nitrogen source; catalyzes the transport of putrescine and delta-aminolevulinic acid (ALA); localized to the vacuolar membrane; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14985124]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015495 - gamma-aminobutyric acid:proton symporter activity [Evidence IGI] [PMID 8455553]; GO_function: GO:0015489 - putrescine transmembrane transporter activity [Evidence IGI] [PMID 14985124]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IEP,IGI] [PMID 8455553]; GO_process: GO:0015847 - putrescine transport [Evidence IGI] [PMID 14985124]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IGI] [PMID 8455553]; GO_process: GO:0006810 - transport [Evidence IEA]; Uga4p 1700817..1702451 Sugiyamaella lignohabitans 30036343 AWJ20_4234 CDS FLC2 NC_031671.1 1702787 1705123 R FAD transporter FLC2 complement(1702787..1705123) Sugiyamaella lignohabitans 30036344 AWJ20_4235 CDS CAR2 NC_031671.1 1707353 1708639 R L-ornithine transaminase (OTAse); catalyzes the second step of arginine degradation, expression is dually-regulated by allophanate induction and a specific arginine induction process; not nitrogen catabolite repression sensitive; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004587 - ornithine-oxo-acid transaminase activity [Evidence IEA]; GO_function: GO:0004587 - ornithine-oxo-acid transaminase activity [Evidence IMP] [PMID 3036506]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0055129 - L-proline biosynthetic process [Evidence IEA]; GO_process: GO:0006527 - arginine catabolic process [Evidence NAS] [PMID 14263163]; GO_process: GO:0006527 - arginine catabolic process [Evidence IC] [PMID 3036506]; GO_process: GO:0006591 - ornithine metabolic process [Evidence IMP] [PMID 3036506]; ornithine-oxo-acid transaminase complement(1707353..1708639) Sugiyamaella lignohabitans 30036345 AWJ20_4236 CDS AWJ20_4236 NC_031671.1 1709771 1711237 R uncharacterized protein complement(1709771..1711237) Sugiyamaella lignohabitans 30036346 AWJ20_4237 CDS BST1 NC_031671.1 1714370 1717405 D GPI inositol deacylase of the endoplasmic reticulum (ER); negatively regulates COPII vesicle formation; prevents production of vesicles with defective subunits; required for proper discrimination between resident ER proteins and Golgi-bound cargo molecules; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8862519]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 8862519]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0050185 - phosphatidylinositol deacylase activity [Evidence IGI] [PMID 14734546]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 8862519]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11673477]; GO_process: GO:0006505 - GPI anchor metabolic process [Evidence IEA]; GO_process: GO:0006505 - GPI anchor metabolic process [Evidence IGI] [PMID 14734546]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006621 - protein retention in ER lumen [Evidence IMP] [PMID 8862519]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016050 - vesicle organization [Evidence IGI,IMP] [PMID 8862519]; Bst1p 1714370..1717405 Sugiyamaella lignohabitans 30036347 AWJ20_4238 CDS AWJ20_4238 NC_031671.1 1718452 1720752 R uncharacterized protein complement(1718452..1720752) Sugiyamaella lignohabitans 30036348 AWJ20_4239 CDS SLN1 NC_031671.1 1725799 1729281 D Histidine kinase osmosensor that regulates a MAP kinase cascade; transmembrane protein with an intracellular kinase domain that signals to Ypd1p and Ssk1p, thereby forming a phosphorelay system similar to bacterial two-component regulators; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10198019]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 14665464]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8808622]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0009927 - histidine phosphotransfer kinase activity [Evidence IDA,IMP] [PMID 12455952]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005034 - osmosensor activity [Evidence IDA] [PMID 12821642]; GO_function: GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO_function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IDA] [PMID 8808622]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0006469 - negative regulation of protein kinase activity [Evidence IGI,IMP] [PMID 9482735]; GO_process: GO:0007234 - osmosensory signaling via phosphorelay pathway [Evidence IDA] [PMID 8808622]; GO_process: GO:0018106 - peptidyl-histidine phosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA,IEA]; GO_process: GO:0046777 - protein autophosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0023014 - signal transduction by phosphorylation [Evidence IEA]; Sln1p 1725799..1729281 Sugiyamaella lignohabitans 30036349 AWJ20_4240 CDS FLR1 NC_031671.1 1730246 1731907 D Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; involved in efflux of fluconazole, diazaborine, benomyl, methotrexate, and other drugs; expression induced in cells treated with the mycotoxin patulin; relocalizes from nucleus to plasma membrane upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10903515]; GO_function: GO:0015238 - drug transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015244 - fluconazole transporter activity [Evidence ISS] [PMID 9235926]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI,IMP] [PMID 10572257]; GO_process: GO:0006855 - drug transmembrane transport [Evidence IGI] [PMID 9235926]; GO_process: GO:0015893 - drug transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9235926]; GO_process: GO:0006810 - transport [Evidence IEA]; Flr1p 1730246..1731907 Sugiyamaella lignohabitans 30036351 AWJ20_4241 CDS AWJ20_4241 NC_031671.1 1732253 1733298 D RNA-binding protein, G-patch type (predicted) join(1732253..1732340,1732427..1733298) Sugiyamaella lignohabitans 30036352 AWJ20_4242 CDS MCP2 NC_031671.1 1733361 1735283 R Mitochondrial hypothetical protein involved in lipid homeostasis; integral membrane protein that localizes to the mitochondrial inner membrane; involved in mitochondrial morphology; non-essential gene which interacts genetically with MDM10, and other members of the ERMES complex; transcription is periodic during the metabolic cycle; homologous to human aarF domain containing kinase, ADCK1; GO_component: GO:0032592 - integral component of mitochondrial membrane [Evidence IDA] [PMID 23781023]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 23781023]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0055088 - lipid homeostasis [Evidence IGI] [PMID 23781023]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence IGI,IMP] [PMID 23781023]; Mcp2p complement(1733361..1735283) Sugiyamaella lignohabitans 30036353 AWJ20_4243 CDS KTR2 NC_031671.1 1735835 1736410 D Mannosyltransferase involved in N-linked protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family; KTR2 has a paralog, YUR1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8631921]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IDA] [PMID 8631921]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 8631921]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 8631921]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; mannosyltransferase KTR2 1735835..1736410 Sugiyamaella lignohabitans 30036354 AWJ20_4244 CDS RPB4 NC_031671.1 1738238 1738528 R RNA polymerase II subunit B32; forms two subunit dissociable complex with Rpb7p; the Rpb4p/Rpb7p subcomplex regulates cellular lifespan via an mRNA decay process; involved in recruitment of 3'-end processing factors to transcribing RNA polymerase II complex and in export of mRNA to cytoplasm under stress conditions; also involved in translation initiation; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 1331084]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2183013]; GO_component: GO:0005665 - DNA-directed RNA polymerase II, core complex [Evidence IDA] [PMID 2186966]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12857861]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IEA]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 16357218]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12857861]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003968 - RNA-directed RNA polymerase activity [Evidence IDA] [PMID 18004386]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 11087726]; GO_function: GO:0003727 - single-stranded RNA binding [Evidence IDA] [PMID 11087726]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IPI] [PMID 21074047]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0031990 - mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 12857861]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IMP] [PMID 16357218]; GO_process: GO:0045948 - positive regulation of translational initiation [Evidence IMP] [PMID 21074047]; GO_process: GO:0034402 - recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex [Evidence IMP] [PMID 18195044]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11577101]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IDA] [PMID 11087726]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase II subunit RPB4 complement(1738238..1738528) Sugiyamaella lignohabitans 30036355 AWJ20_4245 CDS AWJ20_4245 NC_031671.1 1739532 1740448 D uncharacterized protein join(1739532..1739534,1739864..1740014,1740279..1740448) Sugiyamaella lignohabitans 30036356 AWJ20_4246 CDS PNC1 NC_031671.1 1740670 1741362 R Nicotinamidase that converts nicotinamide to nicotinic acid; part of the NAD(+) salvage pathway; required for life span extension by calorie restriction; PNC1 expression responds to all known stimuli that extend replicative life span; protein increases in abundance and relative distribution to cytoplasmic foci decreases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12736687]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12736687]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 12736687]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008936 - nicotinamidase activity [Evidence IEA]; GO_function: GO:0008936 - nicotinamidase activity [Evidence ISS] [PMID 11901108]; GO_function: GO:0008936 - nicotinamidase activity [Evidence IMP] [PMID 19381334]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 11901108]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11901108]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0019358 - nicotinate nucleotide salvage [Evidence ISS] [PMID 11901108]; GO_process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IEP,IMP] [PMID 12736687]; nicotinamidase complement(1740670..1741362) Sugiyamaella lignohabitans 30036357 AWJ20_4247 CDS KAE1 NC_031671.1 1741931 1742560 D Highly conserved ATPase of HSP70/DnaK family; essential functional component of the EKC/KEOPS complex, with Bud32p, Cgi121p, Pcc1p, and Gon7p; EKC/KEOPS complex is required for t6A tRNA modification and telomeric TG1-3 recombination; may have role in transcription; GO_component: GO:0000408 - EKC/KEOPS complex [Evidence IDA] [PMID 16564010]; GO_component: GO:0000408 - EKC/KEOPS complex [Evidence IDA] [PMID 16874308]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 16874308]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0031490 - chromatin DNA binding [Evidence IDA] [PMID 16874308]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0051276 - chromosome organization [Evidence IMP] [PMID 18439903]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 16874308]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 23620299]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0000723 - telomere maintenance [Evidence IPI] [PMID 16564010]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IGI,IMP] [PMID 23390378]; GO_process: GO:0070526 - threonylcarbamoyladenosine biosynthetic process [Evidence IEA]; GO_process: GO:0070525 - threonylcarbamoyladenosine metabolic process [Evidence IMP] [PMID 21183954]; GO_process: GO:0070525 - threonylcarbamoyladenosine metabolic process [Evidence IMP] [PMID 21459853]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Kae1p 1741931..1742560 Sugiyamaella lignohabitans 30036358 AWJ20_4248 CDS SEC20 NC_031671.1 1743369 1744427 R Membrane glycoprotein v-SNARE; involved in retrograde transport from the Golgi to the endoplasmic reticulum (ER); required for N- and O-glycosylation in the Golgi but not in the ER; interacts with the Dsl1p complex through Tip20p; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 12853481]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 12893879]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 9214619]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8334998]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA,ISM] [PMID 1537327]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 19346454]; GO_function: GO:0005484 - SNAP receptor activity [Evidence ISM] [PMID 12853481]; GO_function: GO:0005484 - SNAP receptor activity [Evidence ISM] [PMID 12893879]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8612273]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048279 - vesicle fusion with endoplasmic reticulum [Evidence IC] [PMID 8612273]; GO_process: GO:0048279 - vesicle fusion with endoplasmic reticulum [Evidence NAS] [PMID 9214619]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sec20p complement(1743369..1744427) Sugiyamaella lignohabitans 30036359 AWJ20_4249 CDS AWJ20_4249 NC_031671.1 1744856 1745443 D uncharacterized protein 1744856..1745443 Sugiyamaella lignohabitans 30036360 AWJ20_4250 CDS AWJ20_4250 NC_031671.1 1745659 1747257 R uncharacterized protein complement(1745659..1747257) Sugiyamaella lignohabitans 30036362 AWJ20_4251 CDS AWJ20_4251 NC_031671.1 1747651 1748736 R uncharacterized protein complement(1747651..1748736) Sugiyamaella lignohabitans 30036363 AWJ20_4252 CDS AWJ20_4252 NC_031671.1 1751242 1752807 R uncharacterized protein complement(1751242..1752807) Sugiyamaella lignohabitans 30036364 AWJ20_4253 CDS AWJ20_4253 NC_031671.1 1756225 1759047 R uncharacterized protein complement(1756225..1759047) Sugiyamaella lignohabitans 30036365 AWJ20_4254 CDS AWJ20_4254 NC_031671.1 1760200 1763013 D uncharacterized protein 1760200..1763013 Sugiyamaella lignohabitans 30036366 AWJ20_4255 CDS MDV1 NC_031671.1 1765173 1767200 D Peripheral protein of cytosolic face of mitochondrial outer membrane; required for mitochondrial fission; interacts with Fis1p and with the dynamin-related GTPase Dnm1p; contains WD repeats; MDV1 has a paralog, CAF4, that arose from the whole genome duplication; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 11038180]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 11038182]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0000266 - mitochondrial fission [Evidence IGI,IMP] [PMID 11038180]; GO_process: GO:0000266 - mitochondrial fission [Evidence IGI,IMP,IPI] [PMID 11038182]; GO_process: GO:0000266 - mitochondrial fission [Evidence IGI,IMP] [PMID 11038183]; GO_process: GO:0000266 - mitochondrial fission [Evidence IGI,IMP,IPI] [PMID 11179417]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI,IMP] [PMID 11038182]; GO_process: GO:0016559 - peroxisome fission [Evidence IGI] [PMID 18445678]; Mdv1p 1765173..1767200 Sugiyamaella lignohabitans 30036367 AWJ20_4257 CDS AWJ20_4257 NC_031671.1 1768460 1768681 R uncharacterized protein complement(1768460..1768681) Sugiyamaella lignohabitans 30036369 AWJ20_4258 CDS CCT7 NC_031671.1 1769042 1770712 R Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; mutant has increased aneuploidy tolerance; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct7p complement(1769042..1770712) Sugiyamaella lignohabitans 30036370 AWJ20_4259 CDS UTP30 NC_031671.1 1775737 1776546 R Putative subunit of U3-containing 90S preribosome complex; complex is involved in production of 18S rRNA and assembly of small ribosomal subunit; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IPI] [PMID 21724601]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp30p complement(1775737..1776546) Sugiyamaella lignohabitans 30036371 AWJ20_4260 CDS HSM3 NC_031671.1 1777339 1778802 D Proteasome-interacting protein; involved in the assembly of the base subcomplex of the 19S proteasomal regulatory particle (RP); involved in DNA mismatch repair during slow growth; weak similarity to Msh1p; related to human 19S subunit S5b; structural study suggests Hsm3p is a scaffold protein for Rpt1p-Rpt2p complex formation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19446323]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19446323]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA,IPI] [PMID 19217412]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 10681183]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19217412]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI] [PMID 19412159]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446322]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IGI,IMP] [PMID 19446323]; Hsm3p 1777339..1778802 Sugiyamaella lignohabitans 30036373 AWJ20_4261 CDS IPI3 NC_031671.1 1778938 1780374 R Component of the Rix1 complex and pre-replicative complexes (pre-RCs); required for processing of ITS2 sequences from 35S pre-rRNA; component of the pre-60S ribosomal particle with the dynein-related AAA-type ATPase Mdn1p; required for pre-RC formation and maintenance during DNA replication licensing; highly conserved protein which contains several WD40 motifs; IPI3 is an essential gene; other members include Rix1p, Ipi1p, and Ipi3p; GO_component: GO:0097344 - Rix1 complex [Evidence IDA] [PMID 14759368]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 22421151]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15528184]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 22421151]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IMP] [PMID 22421151]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 14759368]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 22421151]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 15528184]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Ipi3p complement(1778938..1780374) Sugiyamaella lignohabitans 30036374 AWJ20_4262 CDS AWJ20_4262 NC_031671.1 1780863 1782143 D uncharacterized protein 1780863..1782143 Sugiyamaella lignohabitans 30036375 AWJ20_4263 CDS MTR4 NC_031671.1 1782361 1785597 R ATP-dependent 3'-5' RNA helicase of the DExD/H family; involved in nuclear RNA processing and degradation both as a component of TRAMP complex and in TRAMP-independent processes; TRAMP unwinds RNA duplexes, with Mtr4p unwinding activity stimulated by Pap2p/Air2p but not dependent on ongoing polyadenylation; contains an arch domain, with two coiled-coil arms/stalks and a globular fist/KOW domain, which has RNA binding activity and is required for 5.8S rRNA processing; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15828860]; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15935758]; GO_component: GO:0031499 - TRAMP complex [Evidence IDA,IPI] [PMID 15935759]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16541108]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15226447]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8756671]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0034459 - ATP-dependent 3'-5' RNA helicase activity [Evidence IDA,IMP] [PMID 18000032]; GO_function: GO:0034459 - ATP-dependent 3'-5' RNA helicase activity [Evidence IDA] [PMID 18096702]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA] [PMID 18096702]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0034475 - U4 snRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0034476 - U5 snRNA 3'-end processing [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9463390]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IDA] [PMID 15828860]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IDA] [PMID 15935758]; GO_process: GO:0071031 - nuclear mRNA surveillance of mRNA 3'-end processing [Evidence IGI,IMP] [PMID 17410208]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IMP] [PMID 19369424]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 16374505]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 18940861]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15935758]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IGI] [PMID 18000032]; GO_process: GO:0071049 - nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription [Evidence IGI] [PMID 11586364]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IMP] [PMID 10611222]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IMP] [PMID 10508172]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IMP] [PMID 9463390]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; ATP-dependent RNA helicase MTR4 complement(1782361..1785597) Sugiyamaella lignohabitans 30036376 AWJ20_4264 CDS NPR1 NC_031671.1 1790754 1792460 D serine/threonine protein kinase NPR1 1790754..1792460 Sugiyamaella lignohabitans 30036377 AWJ20_4265 CDS AWJ20_4265 NC_031671.1 1793607 1794617 R uncharacterized protein complement(1793607..1794617) Sugiyamaella lignohabitans 30036378 AWJ20_4266 CDS MRPL19 NC_031671.1 1795887 1796267 R Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL19 complement(1795887..1796267) Sugiyamaella lignohabitans 30036379 AWJ20_4267 CDS SHM1 NC_031671.1 1797261 1798520 D Mitochondrial serine hydroxymethyltransferase; converts serine to glycine plus 5,10 methylenetetrahydrofolate; involved in generating precursors for purine, pyrimidine, amino acid, and lipid biosynthesis; reverse reaction generates serine; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 6271]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 9398220]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IMP] [PMID 1100397]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006563 - L-serine metabolic process [Evidence IEA]; GO_process: GO:0006544 - glycine metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IMP] [PMID 1100397]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IGI] [PMID 9398220]; GO_process: GO:0009070 - serine family amino acid biosynthetic process [Evidence IGI] [PMID 9398220]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; glycine hydroxymethyltransferase SHM1 1797261..1798520 Sugiyamaella lignohabitans 30036380 AWJ20_4269 CDS AWJ20_4269 NC_031671.1 1800472 1803603 D Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein 1800472..1803603 Sugiyamaella lignohabitans 30036382 AWJ20_4270 CDS TIM54 NC_031671.1 1804267 1805694 D Component of the mitochondrial TIM22 complex; involved in insertion of polytopic proteins into the inner membrane; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0042721 - mitochondrial inner membrane protein insertion complex [Evidence IDA] [PMID 10637294]; GO_component: GO:0042721 - mitochondrial inner membrane protein insertion complex [Evidence IDA] [PMID 10648604]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015266 - protein channel activity [Evidence IDA] [PMID 12637749]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IGI] [PMID 10637294]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IMP] [PMID 17893242]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IGI,IMP] [PMID 9412462]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tim54p 1804267..1805694 Sugiyamaella lignohabitans 30036384 AWJ20_4271 CDS UBP10 NC_031671.1 1805921 1808173 R Ubiquitin-specific protease, deubiquitinates Ub-protein moieties; interacts with proteins that function in rRNA production and ribosome biogenesis; stabilizes Rpa190p, the largest subunit of RNAP I, by mediating its deubiquitination; controls PCNA deubiquitylation; may regulate silencing by acting on Sir4p; involved in posttranscriptionally regulating Gap1p and possibly other transporters; localized to the nucleolus; human USP36 is a functional analog of Ubp10p; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22902402]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10490600]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 10490600]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 15721261]; GO_process: GO:0016578 - histone deubiquitination [Evidence IMP] [PMID 22829782]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA,IMP] [PMID 15721261]; GO_process: GO:0016579 - protein deubiquitination [Evidence IMP] [PMID 22829782]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp10p complement(1805921..1808173) Sugiyamaella lignohabitans 30036385 AWJ20_4272 CDS SPB1 NC_031671.1 1808691 1811231 R AdoMet-dependent methyltransferase; involved in rRNA processing and 60S ribosomal subunit maturation; methylates G2922 in the tRNA docking site of the large subunit rRNA and in the absence of snR52, U2921; suppressor of PAB1 mutants; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10556316]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10648622]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10556316]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016435 - rRNA (guanine) methyltransferase activity [Evidence IMP] [PMID 15546625]; GO_function: GO:0008650 - rRNA (uridine-2'-O-)-methyltransferase activity [Evidence IGI] [PMID 14636587]; GO_function: GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0001510 - RNA methylation [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10556316]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10648622]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10556316]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10648622]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IGI] [PMID 14636587]; GO_process: GO:0031167 - rRNA methylation [Evidence IDA,IGI,IMP] [PMID 15546625]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Spb1p complement(1808691..1811231) Sugiyamaella lignohabitans 30036386 AWJ20_4273 CDS AWJ20_4273 NC_031671.1 1819969 1821513 D uncharacterized protein 1819969..1821513 Sugiyamaella lignohabitans 30036387 AWJ20_4274 CDS CYC1 NC_031671.1 1822390 1822710 D Cytochrome c, isoform 1; electron carrier of the mitochondrial intermembrane space that transfers electrons from ubiquinone-cytochrome c oxidoreductase to cytochrome c oxidase during cellular respiration; mutations in human homolog cause insulin-responsive hyperglycemia; CYC1 has a paralog, CYC7, that arose from the whole genome duplication; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 9866716]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IDA] [PMID 18975895]; GO_function: GO:0009055 - electron carrier activity [Evidence IDA] [PMID 7851399]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006123 - mitochondrial electron transport, cytochrome c to oxygen [Evidence IDA] [PMID 7851399]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IDA] [PMID 7851399]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; cytochrome c isoform 1 1822390..1822710 Sugiyamaella lignohabitans 30036388 AWJ20_4275 CDS SSY1 NC_031671.1 1824146 1827307 D Component of the SPS plasma membrane amino acid sensor system; senses external amino acid concentration and transmits intracellular signals that result in regulation of expression of amino acid permease genes; other members are Ssy1p, Ptr3p, and Ssy5p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 10409731]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0043200 - response to amino acid [Evidence IMP] [PMID 10409731]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ssy1p 1824146..1827307 Sugiyamaella lignohabitans 30036389 AWJ20_4276 CDS ISY1 NC_031671.1 1827573 1828286 R Member of the NineTeen Complex (NTC); NTC contains Prp19p and stabilizes U6 snRNA in catalytic forms of spliceosome containing U2, U5, and U6 snRNAs; interacts with Prp16p to modulate splicing fidelity; isy1 syf2 cells have defective spindles; GO_component: GO:0000974 - Prp19 complex [Evidence IDA] [PMID 11018040]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 10094305]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 11018040]; GO_component: GO:0071007 - U2-type catalytic step 2 spliceosome [Evidence IDA] [PMID 10094305]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0071014 - post-mRNA release spliceosomal complex [Evidence IDA] [PMID 10094305]; GO_component: GO:0071020 - post-spliceosomal complex [Evidence IDA] [PMID 10094305]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IGI] [PMID 16103217]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IC] [PMID 10094305]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 10094305]; GO_process: GO:0000389 - mRNA 3'-splice site recognition [Evidence IMP] [PMID 16103217]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; Isy1p complement(1827573..1828286) Sugiyamaella lignohabitans 30036390 AWJ20_4277 CDS AWJ20_4277 NC_031671.1 1829521 1831113 D Myb family protein (predicted) 1829521..1831113 Sugiyamaella lignohabitans 30036391 AWJ20_4278 CDS SCW11 NC_031671.1 1832739 1834244 D Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based on its regulation by Ste12p; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 9748433]; GO_function: GO:0042973 - glucan endo-1,3-beta-D-glucosidase activity [Evidence ISS] [PMID 9748433]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 9748433]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Scw11p 1832739..1834244 Sugiyamaella lignohabitans 30036392 AWJ20_4279 CDS AWJ20_4279 NC_031671.1 1834532 1834849 R uncharacterized protein complement(1834532..1834849) Sugiyamaella lignohabitans 30036393 AWJ20_4280 CDS AWJ20_4280 NC_031671.1 1834976 1835692 R uncharacterized protein complement(1834976..1835692) Sugiyamaella lignohabitans 30036395 AWJ20_4281 CDS YPS1 NC_031671.1 1838549 1839943 D Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; YPS1 has a paralog, MKC7, that arose from the whole genome duplication; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA] [PMID 8389368]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0016485 - protein processing [Evidence IDA] [PMID 8626758]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps1p 1838549..1839943 Sugiyamaella lignohabitans 30036396 AWJ20_4282 CDS CYT1 NC_031671.1 1840288 1841031 R Cytochrome c1; component of the mitochondrial respiratory chain; expression is regulated by the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence TAS] [PMID 11279090]; GO_component: GO:0005746 - mitochondrial respiratory chain [Evidence TAS] [PMID 11279090]; GO_component: GO:0005750 - mitochondrial respiratory chain complex III [Evidence IDA] [PMID 10873857]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0045153 - electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity [Evidence IMP] [PMID 11279090]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006122 - mitochondrial electron transport, ubiquinol to cytochrome c [Evidence IMP] [PMID 11279090]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006119 - oxidative phosphorylation [Evidence TAS] [PMID 11279090]; ubiquinol--cytochrome-c reductase catalytic subunit CYT1 complement(1840288..1841031) Sugiyamaella lignohabitans 30036397 AWJ20_4283 CDS INP51 NC_031671.1 1849212 1852604 D Phosphatidylinositol 4,5-bisphosphate 5-phosphatase; synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in phosphatidylinositol 4,5-bisphosphate homeostasis and in endocytosis; null mutation confers cold-tolerant growth; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17452534]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 9560389]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IEA]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10224048]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IMP] [PMID 9438131]; GO_function: GO:0004439 - phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity [Evidence IDA,IMP] [PMID 9565610]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA] [PMID 10224048]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 9438131]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 9560389]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; phosphoinositide 5-phosphatase INP51 1849212..1852604 Sugiyamaella lignohabitans 30036398 AWJ20_4284 CDS AWJ20_4284 NC_031671.1 1853650 1856451 R uncharacterized protein complement(1853650..1856451) Sugiyamaella lignohabitans 30036399 AWJ20_4285 CDS AWJ20_4285 NC_031671.1 1862103 1864394 D uncharacterized protein 1862103..1864394 Sugiyamaella lignohabitans 30036400 AWJ20_4286 CDS TRZ1 NC_031671.1 1865520 1867772 R tRNA 3'-end processing endonuclease tRNase Z; also localized to mitochondria and interacts genetically with Rex2 exonuclease; homolog of the human candidate prostate cancer susceptibility gene ELAC2; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14690591]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 24249226]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 24249226]; GO_function: GO:0042781 - 3'-tRNA processing endoribonuclease activity [Evidence IDA] [PMID 12711671]; GO_function: GO:0042781 - 3'-tRNA processing endoribonuclease activity [Evidence IDA] [PMID 24249226]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:1990180 - mitochondrial tRNA 3'-end processing [Evidence IDA,IMP] [PMID 24249226]; GO_process: GO:0042780 - tRNA 3'-end processing [Evidence IDA] [PMID 24249226]; GO_process: GO:0034414 - tRNA 3'-trailer cleavage, endonucleolytic [Evidence IDA] [PMID 12711671]; GO_process: GO:0034414 - tRNA 3'-trailer cleavage, endonucleolytic [Evidence IMP] [PMID 24249226]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Trz1p complement(1865520..1867772) Sugiyamaella lignohabitans 30036401 AWJ20_4287 CDS AWJ20_4287 NC_031671.1 1869437 1872109 D uncharacterized protein 1869437..1872109 Sugiyamaella lignohabitans 30036402 AWJ20_4288 CDS AWJ20_4288 NC_031671.1 1873480 1873869 D uncharacterized protein 1873480..1873869 Sugiyamaella lignohabitans 30036403 AWJ20_4289 CDS BRR6 NC_031671.1 1886235 1888196 D Essential nuclear envelope integral membrane protein; required for nuclear envelope morphology, nuclear pore complex localization, nuclear export; exhibits synthetic lethal genetic interactions with genes involved in lipid metabolism; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 11483521]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IGI] [PMID 20016074]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 11483521]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006998 - nuclear envelope organization [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IEA]; GO_process: GO:0006611 - protein export from nucleus [Evidence IMP] [PMID 11483521]; GO_process: GO:0006810 - transport [Evidence IEA]; Brr6p 1886235..1888196 Sugiyamaella lignohabitans 30036404 AWJ20_4290 CDS RAI1 NC_031671.1 1889251 1889799 R Nuclear protein with decapping endonuclease activity; targets mRNAs with unmethylated 7-methylguanosine cap structures and 5'-triphosphates; binds to and stabilizes the exoribonuclease Rat1p; required for pre-rRNA processing; relocalizes to the cytosol in response to hypoxia; homologous to human DOM3Z; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 10805743]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12612077]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0034353 - RNA pyrophosphohydrolase activity [Evidence IDA] [PMID 20802481]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IDA] [PMID 10805743]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:1990174 - phosphodiesterase decapping endonuclease activity [Evidence IDA,IMP] [PMID 20802481]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10805743]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10805743]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 16131592]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IDA,IMP] [PMID 20802481]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0030846 - termination of RNA polymerase II transcription, poly(A)-coupled [Evidence IMP] [PMID 15565157]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rai1p complement(1889251..1889799) Sugiyamaella lignohabitans 30036406 AWJ20_4291 CDS VPS5 NC_031671.1 1890208 1892316 D Nexin-1 homolog; required for localizing membrane proteins from a prevacuolar/late endosomal compartment back to late Golgi; structural component of retromer membrane coat complex; forms a retromer subcomplex with Vps17p; required for recruiting the retromer complex to the endosome membranes; VPS5 has a paralog, YKR078W, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9175702]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 9175702]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 9700157]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030905 - retromer complex, outer shell [Evidence IPI] [PMID 9700157]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps5p 1890208..1892316 Sugiyamaella lignohabitans 30036407 AWJ20_4292 CDS MAK10 NC_031671.1 1893516 1895558 R Non-catalytic subunit of N-terminal acetyltransferase of the NatC type; required for replication of dsRNA virus; expression is glucose-repressible; GO_component: GO:0031417 - NatC complex [Evidence IDA] [PMID 10504710]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IMP] [PMID 11274203]; GO_process: GO:0006474 - N-terminal protein amino acid acetylation [Evidence IMP] [PMID 11274203]; Mak10p complement(1893516..1895558) Sugiyamaella lignohabitans 30036408 AWJ20_4293 CDS VPS1 NC_031671.1 1896697 1900322 R Dynamin-like GTPase required for vacuolar sorting; also involved in actin cytoskeleton organization, endocytosis, late Golgi-retention of some proteins, regulation of peroxisome biogenesis; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 20841380]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 15550248]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 16520372]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA,ISS] [PMID 8299420]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI,IMP,IPI] [PMID 15265985]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IGI,IMP] [PMID 20841380]; GO_process: GO:0060988 - lipid tube assembly [Evidence IDA] [PMID 20841380]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0016559 - peroxisome fission [Evidence IMP] [PMID 18445678]; GO_process: GO:0007031 - peroxisome organization [Evidence IDA,IGI,IMP] [PMID 12707309]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 8299420]; GO_process: GO:0007034 - vacuolar transport [Evidence IMP] [PMID 8299420]; dynamin-like GTPase VPS1 complement(join(1896697..1898820,1899621..1900322)) Sugiyamaella lignohabitans 30036409 AWJ20_4294 CDS SPS19 NC_031671.1 1902469 1903350 D Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 1902469..1903350 Sugiyamaella lignohabitans 30036410 AWJ20_4295 CDS YPQ2 NC_031671.1 1905497 1906714 D Putative vacuolar membrane transporter for cationic amino acids; likely contributes to amino acid homeostasis by exporting cationic amino acids from the vacuole; member of the PQ-loop family, with seven transmembrane domains; mutant phenotype is functionally complemented by rat PQLC2 vacuolar transporter; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0071627 - integral component of fungal-type vacuolar membrane [Evidence IDA] [PMID 23169667]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015326 - cationic amino acid transmembrane transporter activity [Evidence IMP,ISO] [PMID 23169667]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0034488 - basic amino acid transmembrane export from vacuole [Evidence IMP,ISO] [PMID 23169667]; GO_process: GO:0006810 - transport [Evidence IEA]; Ypq2p 1905497..1906714 Sugiyamaella lignohabitans 30036411 AWJ20_4296 CDS PAP1 NC_031671.1 1907089 1908690 D Poly(A) polymerase; one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs; required for gene looping; GO_component: GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex [Evidence IDA] [PMID 12819204]; GO_component: GO:0005654 - nucleoplasm [Evidence IPI] [PMID 8631901]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA] [PMID 17850751]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA] [PMID 1840648]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031123 - RNA 3'-end processing [Evidence IEA]; GO_process: GO:0043631 - RNA polyadenylation [Evidence IEA]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 1840648]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IMP] [PMID 8524265]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0071050 - snoRNA polyadenylation [Evidence IGI] [PMID 18951092]; polynucleotide adenylyltransferase PAP1 1907089..1908690 Sugiyamaella lignohabitans 30036412 AWJ20_4297 CDS RKM4 NC_031671.1 1909221 1910666 R Ribosomal lysine methyltransferase; specific for monomethylation of Rpl42ap and Rpl42bp (lysine 55); nuclear SET-domain containing protein; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016279 - protein-lysine N-methyltransferase activity [Evidence IGI,IMP] [PMID 18957409]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0018026 - peptidyl-lysine monomethylation [Evidence IGI,IMP] [PMID 18957409]; Rkm4p complement(1909221..1910666) Sugiyamaella lignohabitans 30036413 AWJ20_4298 CDS HAT2 NC_031671.1 1911078 1912403 D Subunit of the Hat1p-Hat2p histone acetyltransferase complex; required for high affinity binding of the complex to free histone H4, thereby enhancing Hat1p activity; similar to human RbAp46 and 48; has a role in telomeric silencing; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8858151]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9575221]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IPI] [PMID 14761951]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA,IPI] [PMID 8858151]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA] [PMID 9575221]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14761951]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9575221]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 8858151]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 9575221]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 8858151]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IDA] [PMID 8858151]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 10982821]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 8858151]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 9575221]; Hat2p 1911078..1912403 Sugiyamaella lignohabitans 30036414 AWJ20_4299 CDS AWJ20_4299 NC_031671.1 1912854 1913720 D 54S ribosomal protein L50, mitochondrial 1912854..1913720 Sugiyamaella lignohabitans 30036415 AWJ20_4300 CDS NMD5 NC_031671.1 1913902 1917126 R Karyopherin; a carrier protein involved in nuclear import of proteins; importin beta homolog; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9852143]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9852143]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP] [PMID 9755161]; GO_function: GO:0008565 - protein transporter activity [Evidence IDA] [PMID 9852143]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP,ISS] [PMID 9755161]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nmd5p complement(1913902..1917126) Sugiyamaella lignohabitans 30036418 AWJ20_4301 CDS IAH1 NC_031671.1 1918215 1918988 D Isoamyl acetate-hydrolyzing esterase; required in balance with alcohol acetyltransferase to maintain optimal amounts of isoamyl acetate, which is particularly important in sake brewing; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IDA] [PMID 10855721]; GO_process: GO:0006083 - acetate metabolic process [Evidence IDA] [PMID 10855721]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; Iah1p 1918215..1918988 Sugiyamaella lignohabitans 30036419 AWJ20_4302 CDS AWJ20_4302 NC_031671.1 1920775 1921500 D uncharacterized protein 1920775..1921500 Sugiyamaella lignohabitans 30036420 AWJ20_4303 CDS AWJ20_4303 NC_031671.1 1921755 1922717 R uncharacterized protein complement(1921755..1922717) Sugiyamaella lignohabitans 30036421 AWJ20_4307 CDS PRM1 NC_031671.1 1927292 1929343 R pheromone-regulated protein PRM1 complement(1927292..1929343) Sugiyamaella lignohabitans 30036425 AWJ20_4308 CDS ATM1 NC_031671.1 1929934 1932174 R Mitochondrial inner membrane ATP-binding cassette (ABC) transporter; exports mitochondrially synthesized precursors of iron-sulfur (Fe/S) clusters to the cytosol; GO_component: GO:0016021 - integral component of membrane [Evidence IBA,IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 7828591]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 16754360]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IMP,ISS] [PMID 7828591]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 9428742]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IBA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette Fe/S cluster precursor transporter ATM1 complement(1929934..1932174) Sugiyamaella lignohabitans 30036426 AWJ20_4309 CDS AWJ20_4309 NC_031671.1 1932833 1933690 R uncharacterized protein complement(1932833..1933690) Sugiyamaella lignohabitans 30036427 AWJ20_4310 CDS DNF3 NC_031671.1 1934204 1938676 R Trans-golgi network aminophospholipid translocase (flippase); maintains membrane lipid asymmetry in post-Golgi secretory vesicles; localizes to the trans-Golgi network; likely involved in protein transport; type 4 P-type ATPase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 17093059]; GO_component: GO:0030140 - trans-Golgi network transport vesicle [Evidence IDA] [PMID 12221123]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 16452632]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 16452632]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; aminophospholipid-translocating P4-type ATPase DNF3 complement(1934204..1938676) Sugiyamaella lignohabitans 30036429 AWJ20_4311 CDS AWJ20_4311 NC_031671.1 1935417 1935698 D uncharacterized protein 1935417..1935698 Sugiyamaella lignohabitans 30036430 AWJ20_4312 CDS DNF3 NC_031671.1 1938960 1940012 R Trans-golgi network aminophospholipid translocase (flippase); maintains membrane lipid asymmetry in post-Golgi secretory vesicles; localizes to the trans-Golgi network; likely involved in protein transport; type 4 P-type ATPase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 17093059]; GO_component: GO:0030140 - trans-Golgi network transport vesicle [Evidence IDA] [PMID 12221123]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 16452632]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 16452632]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; aminophospholipid-translocating P4-type ATPase DNF3 complement(1938960..1940012) Sugiyamaella lignohabitans 30036431 AWJ20_4313 CDS RPL19A NC_031671.1 1945012 1945314 D Ribosomal 60S subunit protein L19A; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal; homologous to mammalian ribosomal protein L19, no bacterial homolog; RPL19A has a paralog, RPL19B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L19A 1945012..1945314 Sugiyamaella lignohabitans 30036432 AWJ20_4314 CDS OYE2 NC_031671.1 1947551 1948150 D Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN); responsible for geraniol reduction into citronellol during fermentation; homologous to Oye3p with different ligand binding and catalytic properties; may be involved in sterol metabolism, oxidative stress response, and programmed cell death; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17897954]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IDA,ISS] [PMID 8454584]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0018548 - pentaerythritol trinitrate reductase activity [Evidence IEA]; GO_function: GO:0052690 - trichloro-p-hydroquinone reductive dehalogenase activity [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17897954]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Oye2p 1947551..1948150 Sugiyamaella lignohabitans 30036433 AWJ20_4315 CDS OYE2 NC_031671.1 1949423 1949962 D Conserved NADPH oxidoreductase containing flavin mononucleotide (FMN); responsible for geraniol reduction into citronellol during fermentation; homologous to Oye3p with different ligand binding and catalytic properties; may be involved in sterol metabolism, oxidative stress response, and programmed cell death; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17897954]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]; GO_function: GO:0003959 - NADPH dehydrogenase activity [Evidence IDA,ISS] [PMID 8454584]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0018548 - pentaerythritol trinitrate reductase activity [Evidence IEA]; GO_function: GO:0052690 - trichloro-p-hydroquinone reductive dehalogenase activity [Evidence IEA]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17897954]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Oye2p 1949423..1949962 Sugiyamaella lignohabitans 30036434 AWJ20_4316 CDS AIM1 NC_031671.1 1950997 1951368 D Protein involved in mitochondrial function or organization; null mutant displays elevated frequency of mitochondrial genome loss; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Aim1p 1950997..1951368 Sugiyamaella lignohabitans 30036435 AWJ20_4317 CDS AWJ20_4317 NC_031671.1 1956643 1957866 D uncharacterized protein 1956643..1957866 Sugiyamaella lignohabitans 30036436 AWJ20_4318 CDS TEC1 NC_031671.1 1958970 1961627 R Transcription factor targeting filamentation genes and Ty1 expression; Ste12p activation of most filamentation gene promoters depends on Tec1p and Tec1p transcriptional activity is dependent on its association with Ste12p; binds to TCS elements upstream of filamentation genes, which are regulated by Tec1p/Ste12p/Dig1p complex; competes with Dig2p for binding to Ste12p/Dig1p; positive regulator of chronological life span; TEA/ATTS DNA-binding domain family member; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19218425]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9036858]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 9036858]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IGI,IMP] [PMID 16782869]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0001300 - chronological cell aging [Evidence IMP] [PMID 21840851]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 12455687]; GO_process: GO:0036003 - positive regulation of transcription from RNA polymerase II promoter in response to stress [Evidence IDA] [PMID 9036858]; GO_process: GO:0010527 - positive regulation of transposition, RNA-mediated [Evidence IMP] [PMID 10652102]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 8730867]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IDA,IMP] [PMID 9036858]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9055077]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Tec1p complement(1958970..1961627) Sugiyamaella lignohabitans 30036437 AWJ20_4319 CDS RAX1 NC_031671.1 1967187 1968758 D Protein involved in bud site selection during bipolar budding; localization requires Rax2p; has similarity to members of the insulin-related peptide superfamily; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14980713]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15356260]; GO_component: GO:0005934 - cellular bud tip [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 15356260]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IGI] [PMID 11110666]; GO_process: GO:0038032 - termination of G-protein coupled receptor signaling pathway [Evidence IEA]; Rax1p 1967187..1968758 Sugiyamaella lignohabitans 30036438 AWJ20_4320 CDS ell1 NC_031671.1 1969550 1971718 R RNA polymerase II transcription elongation factor SpELL complement(1969550..1971718) Sugiyamaella lignohabitans 30036440 AWJ20_4321 CDS AWJ20_4321 NC_031671.1 1974724 1975791 R Putative short-chain dehydrogenase/reductase; YDL114W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; short-chain dehydrogenase/reductase complement(1974724..1975791) Sugiyamaella lignohabitans 30036441 AWJ20_4322 CDS SLN1 NC_031671.1 1978189 1981404 R Histidine kinase osmosensor that regulates a MAP kinase cascade; transmembrane protein with an intracellular kinase domain that signals to Ypd1p and Ssk1p, thereby forming a phosphorelay system similar to bacterial two-component regulators; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10198019]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 14665464]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8808622]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0009927 - histidine phosphotransfer kinase activity [Evidence IDA,IMP] [PMID 12455952]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005034 - osmosensor activity [Evidence IDA] [PMID 12821642]; GO_function: GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO_function: GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO_function: GO:0004673 - protein histidine kinase activity [Evidence IDA] [PMID 8808622]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0006469 - negative regulation of protein kinase activity [Evidence IGI,IMP] [PMID 9482735]; GO_process: GO:0007234 - osmosensory signaling via phosphorelay pathway [Evidence IDA] [PMID 8808622]; GO_process: GO:0018106 - peptidyl-histidine phosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0000160 - phosphorelay signal transduction system [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA,IEA]; GO_process: GO:0046777 - protein autophosphorylation [Evidence IDA] [PMID 8808622]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0023014 - signal transduction by phosphorylation [Evidence IEA]; Sln1p complement(1978189..1981404) Sugiyamaella lignohabitans 30036442 AWJ20_4324 CDS AMD2 NC_031671.1 1985212 1986825 D Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; Amd2p 1985212..1986825 Sugiyamaella lignohabitans 30036444 AWJ20_4326 CDS AWJ20_4326 NC_031671.1 1989143 1989754 D uncharacterized protein 1989143..1989754 Sugiyamaella lignohabitans 30036446 AWJ20_4327 CDS sad1 NC_031671.1 1989965 1992781 R spindle pole body protein Sad1 complement(1989965..1992781) Sugiyamaella lignohabitans 30036447 AWJ20_4328 CDS AWJ20_4328 NC_031671.1 1993816 1995180 D uncharacterized protein 1993816..1995180 Sugiyamaella lignohabitans 30036448 AWJ20_4329 CDS OSH3 NC_031671.1 1995398 1998667 R Member of an oxysterol-binding protein family; this family has seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 20008566]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11408574]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence ISS] [PMID 11238399]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20008566]; GO_function: GO:0008142 - oxysterol binding [Evidence ISS] [PMID 11238399]; GO_function: GO:0015248 - sterol transporter activity [Evidence IDA] [PMID 20008566]; GO_process: GO:0035621 - ER to Golgi ceramide transport [Evidence IMP] [PMID 24213531]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 15173322]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 17004323]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IGI] [PMID 12054531]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IGI] [PMID 12054531]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IGI] [PMID 17004323]; GO_process: GO:0010922 - positive regulation of phosphatase activity [Evidence IDA] [PMID 21295699]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 12054531]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 17082746]; GO_process: GO:0015918 - sterol transport [Evidence IGI,IMP] [PMID 16585271]; GO_process: GO:0015918 - sterol transport [Evidence IDA] [PMID 20008566]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; oxysterol-binding protein related protein OSH3 complement(1995398..1998667) Sugiyamaella lignohabitans 30036449 AWJ20_4330 CDS TMS1 NC_031671.1 2000252 2001685 D Vacuolar membrane hypothetical protein; is conserved in mammals; predicted to contain eleven transmembrane helices; interacts with Pdr5p, a protein involved in multidrug resistance; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 10637174]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Tms1p 2000252..2001685 Sugiyamaella lignohabitans 30036451 AWJ20_4331 CDS BBC1 NC_031671.1 2002494 2006794 D Protein possibly involved in assembly of actin patches; interacts with an actin assembly factor Las17p and with the SH3 domains of Type I myosins Myo3p and Myo5p; localized predominantly to cortical actin patches; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11743162]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11901111]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_function: GO:0017024 - myosin I binding [Evidence IPI] [PMID 11901111]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI,IPI] [PMID 11901111]; Bbc1p join(2002494..2004681,2004738..2006794) Sugiyamaella lignohabitans 30036452 AWJ20_4332 CDS SAM2 NC_031671.1 2007555 2008709 D S-adenosylmethionine synthetase; catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine; SAM2 has a paralog, SAM1, that arose from the whole genome duplication; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004478 - methionine adenosyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004478 - methionine adenosyltransferase activity [Evidence IDA] [PMID 18078345]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IMP] [PMID 17426150]; GO_process: GO:0006555 - methionine metabolic process [Evidence IMP] [PMID 4585174]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; methionine adenosyltransferase SAM2 2007555..2008709 Sugiyamaella lignohabitans 30036453 AWJ20_4333 CDS RIB2 NC_031671.1 2009798 2010586 D Bifunctional DRAP deaminase tRNA:pseudouridine synthase; the deaminase catalyzes the third step in riboflavin biosynthesis and the synthase catalyzes formation of pseudouridine at position 32 in cytoplasmic tRNAs; RIB2 has a paralog, PUS9, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence ISM] [PMID 15466869]; GO_function: GO:0043723 - 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate deaminase activity [Evidence IMP] [PMID 4555411]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA,IMP] [PMID 15466869]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence ISS] [PMID 8710514]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 4555411]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 5366000]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA,IMP] [PMID 15466869]; bifunctional DRAP deaminase/tRNA pseudouridine synthase RIB2 2009798..2010586 Sugiyamaella lignohabitans 30036454 AWJ20_4334 CDS KAP123 NC_031671.1 2012036 2015407 D Karyopherin beta; mediates nuclear import of ribosomal proteins prior to assembly into ribosomes and import of histones H3 and H4; localizes to the nuclear pore, nucleus, and cytoplasm; exhibits genetic interactions with RAI1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9238021]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9238021]; GO_function: GO:0008536 - Ran GTPase binding [Evidence IEA]; GO_function: GO:0008139 - nuclear localization sequence binding [Evidence IDA] [PMID 11694505]; GO_function: GO:0008565 - protein transporter activity [Evidence IPI] [PMID 9182759]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9321403]; GO_process: GO:0006607 - NLS-bearing protein import into nucleus [Evidence IMP] [PMID 11694505]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IMP] [PMID 11352936]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:2000220 - regulation of pseudohyphal growth [Evidence IMP] [PMID 22043304]; GO_process: GO:0006610 - ribosomal protein import into nucleus [Evidence IMP] [PMID 9321403]; GO_process: GO:0006810 - transport [Evidence IEA]; Kap123p 2012036..2015407 Sugiyamaella lignohabitans 30036455 AWJ20_4335 CDS AWJ20_4335 NC_031671.1 2016496 2018064 D uncharacterized protein 2016496..2018064 Sugiyamaella lignohabitans 30036456 AWJ20_4336 CDS MRP7 NC_031671.1 2019230 2020396 D Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0000048 - peptidyltransferase activity [Evidence ISS] [PMID 9445368]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL2 2019230..2020396 Sugiyamaella lignohabitans 30036457 AWJ20_4337 CDS TPN1 NC_031671.1 2020594 2022162 R Plasma membrane pyridoxine (vitamin B6) transporter; member of the purine-cytosine permease subfamily within the major facilitator superfamily; proton symporter with similarity to Fcy21p, Fcy2p, and Fcy22p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12649274]; GO_function: GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_function: GO:0051183 - vitamin transporter activity [Evidence IDA] [PMID 12649274]; GO_process: GO:0015851 - nucleobase transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0051180 - vitamin transport [Evidence IDA] [PMID 12649274]; Tpn1p complement(2020594..2022162) Sugiyamaella lignohabitans 30036458 AWJ20_4338 CDS AWJ20_4338 NC_031671.1 2022990 2024594 R uncharacterized protein complement(2022990..2024594) Sugiyamaella lignohabitans 30036459 AWJ20_4339 CDS GAL10 NC_031671.1 2024998 2025672 R UDP-glucose-4-epimerase; catalyzes the interconversion of UDP-galactose and UDP-D-glucose in galactose metabolism; also catalyzes the conversion of alpha-D-glucose or alpha-D-galactose to their beta-anomers; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 14764091]; GO_function: GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA,IEA]; GO_function: GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IMP] [PMID 14158615]; GO_function: GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IDA] [PMID 14764091]; GO_function: GO:0004034 - aldose 1-epimerase activity [Evidence IEA]; GO_function: GO:0004034 - aldose 1-epimerase activity [Evidence IDA] [PMID 14764091]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IMP] [PMID 14158615]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IDA] [PMID 14764091]; GO_process: GO:0006012 - galactose metabolic process [Evidence IEA,IEA,IEA]; GO_process: GO:0019318 - hexose metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; bifunctional UDP-glucose 4-epimerase/aldose 1-epimerase complement(2024998..2025672) Sugiyamaella lignohabitans 30036460 AWJ20_4340 CDS IFH1 NC_031671.1 2028562 2030778 D Coactivator, regulates transcription of ribosomal protein (RP) genes; recruited to RP gene promoters during optimal growth conditions via Fhl1p; subunit of CURI, a complex that coordinates RP production and pre-rRNA processing; regulated by acetylation and phosphorylation at different growth states via TORC1 signaling; IFH1 has a paralog, CRF1, that arose from the whole genome duplication; GO_component: GO:0032545 - CURI complex [Evidence IDA] [PMID 17452446]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 15620355]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15466158]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15466158]; GO_function: GO:0003713 - transcription coactivator activity [Evidence IGI,IMP] [PMID 15620355]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 9755194]; GO_process: GO:0060963 - positive regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IMP] [PMID 15616569]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ifh1p 2028562..2030778 Sugiyamaella lignohabitans 30036462 AWJ20_4341 CDS AWJ20_4341 NC_031671.1 2031101 2032018 R uncharacterized protein complement(2031101..2032018) Sugiyamaella lignohabitans 30036463 AWJ20_4342 CDS GCN2 NC_031671.1 2032429 2037639 R serine/threonine-protein kinase GCN2 complement(2032429..2037639) Sugiyamaella lignohabitans 30036464 AWJ20_4343 CDS AWJ20_4343 NC_031671.1 2043163 2044626 D similar to Aspergillus flavus NRRL3357 XP_002376764.1; histidine acid phosphatase, putative 2043163..2044626 Sugiyamaella lignohabitans 30036465 AWJ20_4344 CDS ARX1 NC_031671.1 2044980 2046533 D Nuclear export factor for the ribosomal pre-60S subunit; shuttling factor which directly binds FG rich nucleoporins and facilities translocation through the nuclear pore complex; interacts directly with Alb1p; responsible for Tif6p recycling defects in the absence of Rei1; associated with the ribosomal export complex; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12374754]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16648468]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 16648468]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16648468]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 12374754]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 16648468]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16648468]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 16648468]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 16648468]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI] [PMID 17803941]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IGI,IMP] [PMID 18077551]; Arx1p 2044980..2046533 Sugiyamaella lignohabitans 30036466 AWJ20_4345 CDS SGF73 NC_031671.1 2048221 2049789 D SAGA complex subunit; has a role in anchoring the deubiquitination module into SAGA and SLIK complexes; involved in preinitiation complex assembly at promoters; relocalizes to the cytosol in response to hypoxia; human ortholog ataxin-7 is associated with spinocerebellar ataxia diseases; mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay; GO_component: GO:0071819 - DUBm complex [Evidence IDA] [PMID 20395473]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 12052880]; GO_component: GO:0000124 - SAGA complex [Evidence IPI] [PMID 15932941]; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 17090597]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IPI] [PMID 15932941]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 18488019]; GO_function: GO:0008047 - enzyme activator activity [Evidence IMP] [PMID 20434206]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 15932941]; GO_function: GO:0005198 - structural molecule activity [Evidence IGI,IMP] [PMID 15932941]; GO_process: GO:0016568 - chromatin modification [Evidence IMP] [PMID 15932941]; GO_process: GO:0016568 - chromatin modification [Evidence IMP] [PMID 17090597]; GO_process: GO:0016573 - histone acetylation [Evidence IPI] [PMID 12052880]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 15932941]; GO_process: GO:0016578 - histone deubiquitination [Evidence IMP] [PMID 19226466]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 18488019]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 17090597]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 19226466]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Sgf73p 2048221..2049789 Sugiyamaella lignohabitans 30036467 AWJ20_4346 CDS BMH2 NC_031671.1 2054333 2055151 D 14-3-3 protein, minor isoform; controls proteome at post-transcriptional level, binds proteins and DNA, involved in regulation of many processes including exocytosis, vesicle transport, Ras/MAPK signaling, and rapamycin-sensitive signaling; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress; BMH2 has a paralog, BMH1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12167636]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 12167636]; GO_function: GO:0050815 - phosphoserine binding [Evidence IMP] [PMID 9822578]; GO_function: GO:0019904 - protein domain specific binding [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 14704161]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI] [PMID 19934224]; GO_process: GO:0007265 - Ras protein signal transduction [Evidence IGI] [PMID 9215628]; GO_process: GO:0030437 - ascospore formation [Evidence IGI] [PMID 9215628]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence IGI] [PMID 17559233]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IGI] [PMID 9215628]; GO_process: GO:0043066 - negative regulation of apoptotic process [Evidence IMP] [PMID 22785534]; GO_process: GO:0051436 - negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle [Evidence IPI] [PMID 17030612]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IGI] [PMID 19934224]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IGI] [PMID 9215628]; GO_process: GO:0001402 - signal transduction involved in filamentous growth [Evidence IGI] [PMID 9215628]; 14-3-3 family protein BMH2 2054333..2055151 Sugiyamaella lignohabitans 30036468 AWJ20_4347 CDS ASC1 NC_031671.1 2057461 2058477 D G-protein beta subunit and guanine dissociation inhibitor for Gpa2p; ortholog of RACK1 that inhibits translation; core component of the small (40S) ribosomal subunit; regulates P-body formation induced by replication stress; represses Gcn4p in the absence of amino acid starvation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 15340087]; GO_function: GO:0001965 - G-protein alpha-subunit binding [Evidence IPI] [PMID 17591772]; GO_function: GO:0005092 - GDP-dissociation inhibitor activity [Evidence IDA] [PMID 17591772]; GO_function: GO:0004871 - signal transducer activity [Evidence IMP,IPI] [PMID 17591772]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IMP,IPI] [PMID 17591772]; GO_process: GO:0010255 - glucose mediated signaling pathway [Evidence IMP,IPI] [PMID 17591772]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 17591772]; GO_process: GO:0017148 - negative regulation of translation [Evidence IMP] [PMID 15340087]; guanine nucleotide-binding protein subunit beta 2057461..2058477 Sugiyamaella lignohabitans 30036469 AWJ20_4348 CDS tam14 NC_031671.1 2058719 2060212 R top hit is XP_002839470.1 originated in Tuber melanosporum Mel28; conserved fungal protein; uncharacterized protein complement(2058719..2060212) Sugiyamaella lignohabitans 30036470 AWJ20_4349 CDS SCJ1 NC_031671.1 2060611 2061657 D One of several homologs of bacterial chaperone DnaJ; located in the ER lumen where it cooperates with Kar2p to mediate maturation of proteins; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 7744969]; GO_function: GO:0051087 - chaperone binding [Evidence IMP,ISS] [PMID 9817751]; GO_function: GO:0031072 - heat shock protein binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11381090]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IMP] [PMID 9817751]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006986 - response to unfolded protein [Evidence IMP] [PMID 9817751]; GO_process: GO:0006810 - transport [Evidence IEA]; Scj1p 2060611..2061657 Sugiyamaella lignohabitans 30036471 AWJ20_4350 CDS AWJ20_4350 NC_031671.1 2061855 2062805 R Efm3p complement(2061855..2062805) Sugiyamaella lignohabitans 30036473 AWJ20_4351 CDS OLE1 NC_031671.1 2065489 2066967 D Delta(9) fatty acid desaturase; required for monounsaturated fatty acid synthesis and for normal distribution of mitochondria; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 12475963]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IGI,ISA] [PMID 8530368]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [Evidence IEA]; GO_function: GO:0004768 - stearoyl-CoA 9-desaturase activity [Evidence IEA,IEA]; GO_function: GO:0004768 - stearoyl-CoA 9-desaturase activity [Evidence IMP,ISS] [PMID 1978720]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006636 - unsaturated fatty acid biosynthetic process [Evidence IMP,ISS] [PMID 1978720]; stearoyl-CoA 9-desaturase 2065489..2066967 Sugiyamaella lignohabitans 30036474 AWJ20_4352 CDS MET8 NC_031671.1 2068017 2068775 D Bifunctional dehydrogenase and ferrochelatase; involved in the biosynthesis of siroheme, a prosthetic group used by sulfite reductase; required for sulfate assimilation and methionine biosynthesis; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004325 - ferrochelatase activity [Evidence IDA] [PMID 11980703]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0043115 - precorrin-2 dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0043115 - precorrin-2 dehydrogenase activity [Evidence IDA] [PMID 10051442]; GO_function: GO:0043115 - precorrin-2 dehydrogenase activity [Evidence IDA] [PMID 11980703]; GO_function: GO:0051266 - sirohydrochlorin ferrochelatase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019354 - siroheme biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0019354 - siroheme biosynthetic process [Evidence IMP] [PMID 9003798]; GO_process: GO:0000103 - sulfate assimilation [Evidence IMP] [PMID 10051442]; bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase MET8 2068017..2068775 Sugiyamaella lignohabitans 30036475 AWJ20_4353 CDS BCD1 NC_031671.1 2071121 2072368 R Essential protein required for the accumulation of box C/D snoRNA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence NAS] [PMID 12837249]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0016074 - snoRNA metabolic process [Evidence IMP] [PMID 12837249]; Bcd1p complement(2071121..2072368) Sugiyamaella lignohabitans 30036476 AWJ20_4354 CDS MSC7 NC_031671.1 2074720 2076501 D hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; msc7 mutants are defective in directing meiotic recombination events to homologous chromatids; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 10511544]; Msc7p 2074720..2076501 Sugiyamaella lignohabitans 30036477 AWJ20_4355 CDS RRF1 NC_031671.1 2076751 2077491 R Mitochondrial ribosome recycling factor; essential for mitochondrial protein synthesis and for the maintenance of the respiratory function of mitochondria; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 12853640]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003747 - translation release factor activity [Evidence ISO] [PMID 9746366]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 12853640]; GO_process: GO:0006412 - translation [Evidence IEA,IEA]; Rrf1p complement(2076751..2077491) Sugiyamaella lignohabitans 30036478 AWJ20_4356 CDS RPL10 NC_031671.1 2079043 2079711 D Ribosomal 60S subunit protein L10; responsible for joining the 40S and 60S subunits; regulates translation initiation; similar to members of the QM gene family; homologous to mammalian ribosomal protein L10 and bacterial L16; protein abundance increases in response to DNA replication stress; mutations in the human ortholog are associated with development of T-cell acute lymphoblastic leukemia and similar changes in the yeast gene result in ribosome biogenesis defects; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 18824477]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 9580698]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006415 - translational termination [Evidence IMP] [PMID 18824477]; ribosomal 60S subunit protein L10 2079043..2079711 Sugiyamaella lignohabitans 30036479 AWJ20_4358 CDS DLT1 NC_031671.1 2081839 2083404 D hypothetical protein; mutant sensitive to 6-azauracil (6AU) and mycophenolic acid (MPA); GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Dlt1p 2081839..2083404 Sugiyamaella lignohabitans 30036481 AWJ20_4359 CDS ENT2 NC_031671.1 2083659 2085212 R Epsin-like protein required for endocytosis and actin patch assembly; functionally redundant with Ent1p; contains clathrin-binding motif at C-terminus; ENT2 has a paralog, ENT1, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence TAS] [PMID 10652251]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0030276 - clathrin binding [Evidence TAS] [PMID 12461563]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence IMP] [PMID 10449404]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 10449404]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 10449404]; Ent2p complement(2083659..2085212) Sugiyamaella lignohabitans 30036482 AWJ20_4360 CDS AIM2 NC_031671.1 2088253 2088792 D protein AIM2 2088253..2088792 Sugiyamaella lignohabitans 30036484 AWJ20_4361 CDS DCW1 NC_031671.1 2091163 2092527 D Putative mannosidase; GPI-anchored membrane protein required for cell wall biosynthesis in bud formation;homologous to Dfg5p; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA] [PMID 12421307]; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0008496 - mannan endo-1,6-alpha-mannosidase activity [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI] [PMID 15470258]; GO_process: GO:0016052 - carbohydrate catabolic process [Evidence IEA]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IDA] [PMID 12421307]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Dcw1p 2091163..2092527 Sugiyamaella lignohabitans 30036485 AWJ20_4362 CDS DCW1 NC_031671.1 2093419 2094780 R Putative mannosidase; GPI-anchored membrane protein required for cell wall biosynthesis in bud formation;homologous to Dfg5p; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA] [PMID 12421307]; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0008496 - mannan endo-1,6-alpha-mannosidase activity [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI] [PMID 15470258]; GO_process: GO:0016052 - carbohydrate catabolic process [Evidence IEA]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IDA] [PMID 12421307]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Dcw1p complement(2093419..2094780) Sugiyamaella lignohabitans 30036486 AWJ20_4364 CDS ppc89 NC_031671.1 2096672 2098993 R spindle pole body protein Ppc89 complement(2096672..2098993) Sugiyamaella lignohabitans 30036488 AWJ20_4365 CDS URA5 NC_031671.1 2099500 2100213 D Major orotate phosphoribosyltransferase (OPRTase) isozyme; catalyzes the fifth enzymatic step in de novo biosynthesis of pyrimidines, converting orotate into orotidine-5'-phosphate; URA5 has a paralog, URA10, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IMP] [PMID 4550660]; GO_function: GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IDA] [PMID 9882434]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0044205 - 'de novo' UMP biosynthetic process [Evidence IEA]; GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0009116 - nucleoside metabolic process [Evidence IEA]; GO_process: GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0046132 - pyrimidine ribonucleoside biosynthetic process [Evidence IMP] [PMID 4550660]; GO_process: GO:0046132 - pyrimidine ribonucleoside biosynthetic process [Evidence IDA] [PMID 9882434]; orotate phosphoribosyltransferase URA5 2099500..2100213 Sugiyamaella lignohabitans 30036489 AWJ20_4366 CDS mug136 NC_031671.1 2102663 2104201 D acetylglucosaminyltransferase (predicted) 2102663..2104201 Sugiyamaella lignohabitans 30036490 AWJ20_4367 CDS SEC65 NC_031671.1 2104394 2105257 R Subunit of the signal recognition particle (SRP); involved in protein targeting to the ER; interacts with Srp54p; homolog of mammalian SRP19; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0048500 - signal recognition particle [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IEA]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IDA] [PMID 1313947]; GO_component: GO:0005786 - signal recognition particle, endoplasmic reticulum targeting [Evidence IMP,ISS] [PMID 1313948]; GO_function: GO:0008312 - 7S RNA binding [Evidence IEA]; GO_function: GO:0008312 - 7S RNA binding [Evidence IDA] [PMID 14681587]; GO_process: GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA]; GO_process: GO:0006617 - SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition [Evidence IMP] [PMID 1313947]; GO_process: GO:0045047 - protein targeting to ER [Evidence IMP] [PMID 1313948]; Sec65p complement(2104394..2105257) Sugiyamaella lignohabitans 30036491 AWJ20_4368 CDS TOM71 NC_031671.1 2109154 2109843 R protein channel TOM71 complement(2109154..2109843) Sugiyamaella lignohabitans 30036492 AWJ20_4369 CDS SCS7 NC_031671.1 2110210 2111316 R Sphingolipid alpha-hydroxylase; functions in the alpha-hydroxylation of sphingolipid-associated very long chain fatty acids, has both cytochrome b5-like and hydroxylase/desaturase domains, not essential for growth; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 9353282]; GO_function: GO:0080132 - fatty acid alpha-hydroxylase activity [Evidence IMP] [PMID 9353282]; GO_function: GO:0080132 - fatty acid alpha-hydroxylase activity [Evidence IMP] [PMID 9559540]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006673 - inositolphosphoceramide metabolic process [Evidence IMP] [PMID 16652392]; GO_process: GO:0006673 - inositolphosphoceramide metabolic process [Evidence IMP] [PMID 9353282]; GO_process: GO:0006673 - inositolphosphoceramide metabolic process [Evidence IMP] [PMID 9368039]; GO_process: GO:0006673 - inositolphosphoceramide metabolic process [Evidence IGI,IMP] [PMID 9559540]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; fatty acid alpha-hydroxylase complement(2110210..2111316) Sugiyamaella lignohabitans 30036493 AWJ20_4371 CDS AWJ20_4371 NC_031671.1 2113234 2113947 D Ornithine transporter of the mitochondrial inner membrane 2113234..2113947 Sugiyamaella lignohabitans 30036496 AWJ20_4372 CDS DAL5 NC_031671.1 2115570 2116118 D Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]; allantoate permease 2115570..2116118 Sugiyamaella lignohabitans 30036497 AWJ20_4373 CDS THI73 NC_031671.1 2116563 2117369 D Putative plasma membrane permease; proposed to be involved in carboxylic acid uptake and repressed by thiamine; substrate of Dbf2p/Mob1p kinase; transcription is altered if mitochondrial dysfunction occurs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16850348]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 10869563]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 10869563]; Thi73p 2116563..2117369 Sugiyamaella lignohabitans 30036498 AWJ20_4374 CDS AWJ20_4374 NC_031671.1 2119348 2120598 D uncharacterized protein 2119348..2120598 Sugiyamaella lignohabitans 30036499 AWJ20_4375 CDS AWJ20_4375 NC_031671.1 2123358 2124776 R NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor complement(2123358..2124776) Sugiyamaella lignohabitans 30036500 AWJ20_4376 CDS AWJ20_4376 NC_031671.1 2126849 2128852 R uncharacterized protein complement(2126849..2128852) Sugiyamaella lignohabitans 30036501 AWJ20_4377 CDS AWJ20_4377 NC_031671.1 2138045 2138467 D potential mitochondrial NADH-ubiquinone oxidoreductase complex I,17.2 kD subunit; similar to N. crassa orf (CAD21387); allele of CaO19.1625; putative mitochondrial Complex I, 17.2 kd subunit 2138045..2138467 Sugiyamaella lignohabitans 30036502 AWJ20_4378 CDS DYS1 NC_031671.1 2138712 2139812 R Deoxyhypusine synthase; catalyzes formation of deoxyhypusine, the first step in hypusine biosynthesis; triggers posttranslational hypusination of translation elongation factor eIF-5A and regulates its intracellular levels; tetrameric; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0034038 - deoxyhypusine synthase activity [Evidence IEA]; GO_function: GO:0034038 - deoxyhypusine synthase activity [Evidence IDA] [PMID 7629166]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0050983 - deoxyhypusine biosynthetic process from spermidine [Evidence IEA]; GO_process: GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IEA,IEA]; GO_process: GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IDA] [PMID 7629166]; Dys1p complement(2138712..2139812) Sugiyamaella lignohabitans 30036503 AWJ20_4379 CDS ADK1 NC_031671.1 2140654 2141421 D Adenylate kinase, required for purine metabolism; localized to the cytoplasm and the mitochondria; lacks cleavable signal sequence; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 2850178]; GO_component: GO:0005829 - cytosol [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 2850178]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IDA] [PMID 15753074]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IDA,IMP] [PMID 18433446]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IMP] [PMID 2850178]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006172 - ADP biosynthetic process [Evidence IEA]; GO_process: GO:0006172 - ADP biosynthetic process [Evidence IDA] [PMID 2848829]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 20980819]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0009117 - nucleotide metabolic process [Evidence IMP] [PMID 2850178]; GO_process: GO:0046939 - nucleotide phosphorylation [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; adenylate kinase ADK1 2140654..2141421 Sugiyamaella lignohabitans 30036504 AWJ20_4380 CDS PCF11 NC_031671.1 2141698 2143314 R mRNA 3' end processing factor; essential component of cleavage and polyadenylation factor IA (CF IA), involved in pre-mRNA 3' end processing and in transcription termination; binds C-terminal domain of largest subunit of RNA pol II (Rpo21p); required for gene looping; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005849 - mRNA cleavage factor complex [Evidence IPI] [PMID 11344258]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IDA] [PMID 12727883]; GO_function: GO:0000993 - RNA polymerase II core binding [Evidence IMP,IPI] [PMID 15998810]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IMP] [PMID 15998810]; GO_process: GO:0006353 - DNA-templated transcription, termination [Evidence IEA]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 11344258]; GO_process: GO:0006378 - mRNA polyadenylation [Evidence IDA] [PMID 11344258]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IDA] [PMID 12727883]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IDA,IMP] [PMID 15998810]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Pcf11p complement(2141698..2143314) Sugiyamaella lignohabitans 30036506 AWJ20_4381 CDS AWJ20_4381 NC_031671.1 2143721 2144047 R mRNA 3' end processing factor complement(2143721..2144047) Sugiyamaella lignohabitans 30036507 AWJ20_4382 CDS GGC1 NC_031671.1 2146078 2146872 D Mitochondrial GTP/GDP transporter; essential for mitochondrial genome maintenance; has a role in mitochondrial iron transport; member of the mitochondrial carrier family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 10930523]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0001409 - guanine nucleotide transmembrane transporter activity [Evidence IDA] [PMID 14998997]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP] [PMID 14629196]; GO_process: GO:0001408 - guanine nucleotide transport [Evidence IDA] [PMID 14998997]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 14998997]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 8905928]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 14998997]; GO_process: GO:0006810 - transport [Evidence IEA]; Ggc1p 2146078..2146872 Sugiyamaella lignohabitans 30036508 AWJ20_4383 CDS PUF3 NC_031671.1 2147349 2150264 D mRNA-binding protein PUF3 2147349..2150264 Sugiyamaella lignohabitans 30036509 AWJ20_4384 CDS AWJ20_4384 NC_031671.1 2167450 2168505 D uncharacterized protein 2167450..2168505 Sugiyamaella lignohabitans 30036510 AWJ20_4385 CDS AWJ20_4385 NC_031671.1 2168658 2169659 R uncharacterized protein complement(2168658..2169659) Sugiyamaella lignohabitans 30036511 AWJ20_4386 CDS AWJ20_4386 NC_031671.1 2170379 2170669 D uncharacterized protein 2170379..2170669 Sugiyamaella lignohabitans 30036512 AWJ20_4387 CDS NAT2 NC_031671.1 2172362 2173081 D hypothetical protein; has an apparent role in acetylation of N-terminal methionine residues; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0004596 - peptide alpha-N-acetyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0017196 - N-terminal peptidyl-methionine acetylation [Evidence IMP] [PMID 8175741]; Nat2p 2172362..2173081 Sugiyamaella lignohabitans 30036513 AWJ20_4388 CDS GTR1 NC_031671.1 2176203 2176940 R Cytoplasmic GTPase; forms a heterodimer with Gtr2p to stimulate TORC1 in response to amino acids; component of GSE complex, which is required for sorting of Gap1p; involved in phosphate transport and telomeric silencing; similar to human RagA and RagB; GO_component: GO:0034448 - EGO complex [Evidence IDA] [PMID 16732272]; GO_component: GO:1990131 - Gtr1-Gtr2 GTPase complex [Evidence IPI] [PMID 10388807]; GO_component: GO:1990131 - Gtr1-Gtr2 GTPase complex [Evidence IPI] [PMID 16143306]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10388807]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 15885099]; GO_component: GO:0031902 - late endosome membrane [Evidence IDA] [PMID 16732272]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10388807]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 22726655]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 23716719]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IDA] [PMID 22726655]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 18258182]; GO_process: GO:0006817 - phosphate ion transport [Evidence IEA]; GO_process: GO:0006817 - phosphate ion transport [Evidence IMP] [PMID 1620108]; GO_process: GO:0032008 - positive regulation of TOR signaling [Evidence IDA,IGI,IMP] [PMID 19748353]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IMP,IPI] [PMID 15937128]; GO_process: GO:0006383 - transcription from RNA polymerase III promoter [Evidence IMP,IPI] [PMID 15937128]; GO_process: GO:0006810 - transport [Evidence IEA]; Rag GTPase GTR1 complement(2176203..2176940) Sugiyamaella lignohabitans 30036514 AWJ20_4389 CDS ERG9 NC_031671.1 2178301 2179545 D Farnesyl-diphosphate farnesyl transferase (squalene synthase); joins two farnesyl pyrophosphate moieties to form squalene in the sterol biosynthesis pathway; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 350878]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004310 - farnesyl-diphosphate farnesyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004310 - farnesyl-diphosphate farnesyltransferase activity [Evidence IDA] [PMID 8157649]; GO_function: GO:0004310 - farnesyl-diphosphate farnesyltransferase activity [Evidence IDA] [PMID 8323279]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0051996 - squalene synthase activity [Evidence IEA]; GO_function: GO:0051996 - squalene synthase activity [Evidence IDA] [PMID 8157649]; GO_function: GO:0051996 - squalene synthase activity [Evidence IDA] [PMID 8323279]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_function: GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 1807826]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]; GO_process: GO:0008610 - lipid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; bifunctional farnesyl-diphosphate farnesyltransferase/squalene synthase 2178301..2179545 Sugiyamaella lignohabitans 30036515 AWJ20_4390 CDS AWJ20_4390 NC_031671.1 2179752 2180648 R uncharacterized protein complement(2179752..2180648) Sugiyamaella lignohabitans 30036517 AWJ20_4391 CDS COQ4 NC_031671.1 2189886 2190818 D Protein with a role in ubiquinone (Coenzyme Q) biosynthesis; possibly functioning in stabilization of Coq7p; located on the matrix face of the mitochondrial inner membrane; component of a mitochondrial ubiquinone-synthesizing complex; GO_component: GO:0031314 - extrinsic component of mitochondrial inner membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 11469793]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 11469793]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 9266513]; Coq4p 2189886..2190818 Sugiyamaella lignohabitans 30036518 AWJ20_4392 CDS NOP56 NC_031671.1 2194235 2195800 R Essential evolutionarily-conserved nucleolar protein; component of the box C/D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation; overexpression causes spindle orientation defects; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IPI] [PMID 10733567]; GO_component: GO:0031428 - box C/D snoRNP complex [Evidence IDA] [PMID 11081632]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9372940]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000154 - rRNA modification [Evidence TAS] [PMID 10690410]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 10733567]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; snoRNP complex protein NOP56 complement(2194235..2195800) Sugiyamaella lignohabitans 30036519 AWJ20_4393 CDS MAP1 NC_031671.1 2196589 2197773 D Methionine aminopeptidase; catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map2p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IEA]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IDA] [PMID 11968008]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IDA] [PMID 2246265]; GO_function: GO:0008235 - metalloexopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0010629 - negative regulation of gene expression [Evidence IMP] [PMID 21124907]; GO_process: GO:0070084 - protein initiator methionine removal [Evidence IEA]; GO_process: GO:0035551 - protein initiator methionine removal involved in protein maturation [Evidence IMP] [PMID 11811952]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Map1p 2196589..2197773 Sugiyamaella lignohabitans 30036520 AWJ20_4394 CDS CCT6 NC_031671.1 2206534 2208135 R Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, essential protein that is required for the assembly of actin and tubulins in vivo; contains an ATP-binding motif; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct6p complement(2206534..2208135) Sugiyamaella lignohabitans 30036521 AWJ20_4395 CDS AWJ20_4395 NC_031671.1 2208929 2209555 D translin-associated factor TraX, putative 2208929..2209555 Sugiyamaella lignohabitans 30036522 AWJ20_4396 CDS AWJ20_4396 NC_031671.1 2209793 2210395 R Protein UGX2 complement(2209793..2210395) Sugiyamaella lignohabitans 30036523 AWJ20_4397 CDS UGA3 NC_031671.1 2216262 2218670 D Transcriptional activator for GABA-dependent induction of GABA genes; binds to DNA elements found in the promoters of target genes and increases their expression in the presence of GABA (gamma-aminobutyrate); zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; localized to the nucleus; examples of GABA genes include UGA1, UGA2, and UGA4; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19159085]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 12235130]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 21515579]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0001010 - sequence-specific DNA binding transcription factor recruiting transcription factor activity [Evidence IDA,IGI] [PMID 21515579]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 3888627]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7899074]; GO_process: GO:0019740 - nitrogen utilization [Evidence IMP] [PMID 7899074]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Uga3p 2216262..2218670 Sugiyamaella lignohabitans 30036524 AWJ20_4398 CDS AWJ20_4398 NC_031671.1 2220434 2226492 R Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9448009]; GO_component: GO:0000943 - retrotransposon nucleocapsid [Evidence ISS] [PMID 9582191]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 9582191]; GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0003964 - RNA-directed DNA polymerase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0004540 - ribonuclease activity [Evidence ISS] [PMID 9582191]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015074 - DNA integration [Evidence IEA,IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0032196 - transposition [Evidence IEA]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence ISS] [PMID 9582191]; GO_process: GO:0019076 - viral release from host cell [Evidence IEA]; gag-pol fusion protein complement(join(2220434..2220442,2220853..2226492)) Sugiyamaella lignohabitans 30036525 AWJ20_4399 CDS SLY1 NC_031671.1 2227206 2229161 D Hydrophilic protein involved in ER/Golgi vesicle trafficking; SM (Sec1/Munc-18) family protein that binds the tSNARE Sed5p and stimulates its assembly into a trans-SNARE membrane-protein complex; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 10747087]; GO_component: GO:0000139 - Golgi membrane [Evidence IDA] [PMID 15372079]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 15372079]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10747087]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IGI] [PMID 15958490]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0000149 - SNARE binding [Evidence IDA] [PMID 15958490]; GO_function: GO:0019905 - syntaxin binding [Evidence IDA,IMP] [PMID 12186954]; GO_function: GO:0019905 - syntaxin binding [Evidence IDA] [PMID 15372079]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 9545229]; GO_process: GO:0035543 - positive regulation of SNARE complex assembly [Evidence IMP] [PMID 12186954]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 15958490]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006904 - vesicle docking involved in exocytosis [Evidence IEA]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IMP] [PMID 8636207]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sly1p 2227206..2229161 Sugiyamaella lignohabitans 30036526 AWJ20_4400 CDS AWJ20_4400 NC_031671.1 2230272 2231993 D uncharacterized protein 2230272..2231993 Sugiyamaella lignohabitans 30036529 AWJ20_4401 CDS RVB1 NC_031671.1 2232530 2233900 R ATP-dependent DNA helicase, also known as pontin; member of the AAA+ and RuvB-like protein families; similar to Rvb2p; conserved component of multiple complexes including the INO80 complex, the Swr1 complex, and the R2TP complex (Rvb1-Rvb2-Tah1-Pih1); involved in multiple processes such as chromatin remodeling, box C/D snoRNP assembly, and RNA polymerase II assembly; GO_component: GO:0070209 - ASTRA complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0097255 - R2TP complex [Evidence IDA] [PMID 15766533]; GO_component: GO:0097255 - R2TP complex [Evidence IPI] [PMID 18268103]; GO_component: GO:0000812 - Swr1 complex [Evidence IPI] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IPI] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IDA] [PMID 18234224]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0000492 - box C/D snoRNP assembly [Evidence IMP] [PMID 18268103]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IPI] [PMID 14690608]; GO_process: GO:0043486 - histone exchange [Evidence IPI] [PMID 14645854]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11278922]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; RuvB family ATP-dependent DNA helicase pontin complement(2232530..2233900) Sugiyamaella lignohabitans 30036530 AWJ20_4402 CDS HST4 NC_031671.1 2234504 2236435 D Member of the Sir2 family of NAD(+)-dependent protein deacetylases; involved along with Hst3p in silencing at telomeres, cell cycle progression, radiation resistance, genomic stability and short-chain fatty acid metabolism; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence ISS] [PMID 7498786]; GO_function: GO:0070403 - NAD+ binding [Evidence IEA]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IMP] [PMID 16815704]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 7498786]; GO_process: GO:0016575 - histone deacetylation [Evidence IMP] [PMID 16815704]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0046459 - short-chain fatty acid metabolic process [Evidence IMP] [PMID 12618394]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hst4p 2234504..2236435 Sugiyamaella lignohabitans 30036531 AWJ20_4403 CDS GPN3 NC_031671.1 2236658 2237482 R Putative GTPase with a role in biogenesis of RNA pol II and polIII; may be involved in assembly of RNA polymerases II and III and in their transport into the nucleus; may have a role in sister chromatid cohesion; contains a Gly-Pro-Asn motif in the G domain; similar to Npa3p and Gpn2p; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0005525 - GTP binding [Evidence ISA] [PMID 23267056]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0005048 - signal sequence binding [Evidence ISS] [PMID 14690591]; GO_process: GO:0044376 - RNA polymerase II complex localization to nucleus [Evidence IMP] [PMID 23267056]; GO_process: GO:1990022 - RNA polymerase III complex localization to nucleus [Evidence IMP] [PMID 23267056]; Gpn3p complement(2236658..2237482) Sugiyamaella lignohabitans 30036532 AWJ20_4404 CDS MSC2 NC_031671.1 2237940 2240624 R Endoplasmic reticulum zinc transporter; part of a heterodimeric transporter with Zrg17p that transfers zinc from the cytosol to the ER lumen; member of the cation diffusion facilitator family of efflux pumps; localizes to ER and nucleus; mutations affect the cellular distribution of zinc and also confer defects in meiotic recombination between homologous chromatids; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15277543]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 11058603]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046873 - metal ion transmembrane transporter activity [Evidence ISS] [PMID 11058603]; GO_function: GO:0005385 - zinc ion transmembrane transporter activity [Evidence IMP] [PMID 11058603]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006882 - cellular zinc ion homeostasis [Evidence IMP] [PMID 11058603]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 15277543]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IEA]; GO_process: GO:0006829 - zinc ion transport [Evidence IMP] [PMID 15277543]; metal cation transporter MSC2 complement(2237940..2240624) Sugiyamaella lignohabitans 30036533 AWJ20_4405 CDS SWT21 NC_031671.1 2241082 2242248 D Protein involved in mRNA splicing; contains a consensus nuclear export signal (NES) sequence similar to the consensus sequence recognized by Crm1p; interacts genetically with Prp40p and Tgs1p; contains WD40 repeats; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19451230]; GO_component: GO:0030532 - small nuclear ribonucleoprotein complex [Evidence IDA] [PMID 19451230]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 19451230]; Swt21p 2241082..2242248 Sugiyamaella lignohabitans 30036534 AWJ20_4406 CDS RRI1 NC_031671.1 2242438 2243550 R Catalytic subunit of the COP9 signalosome (CSN) complex; acts as an isopeptidase in cleaving the ubiquitin-like protein Nedd8 from SCF ubiquitin ligases; metalloendopeptidase involved in the adaptation to pheromone signaling; GO_component: GO:0008180 - COP9 signalosome [Evidence IEA]; GO_component: GO:0008180 - COP9 signalosome [Evidence IDA] [PMID 12446563]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IMP] [PMID 12183637]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0000754 - adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion [Evidence IMP] [PMID 12446563]; GO_process: GO:0010388 - cullin deneddylation [Evidence IMP] [PMID 12186635]; GO_process: GO:0010388 - cullin deneddylation [Evidence IMP] [PMID 12446563]; GO_process: GO:0010388 - cullin deneddylation [Evidence IMP] [PMID 24164706]; GO_process: GO:0070452 - positive regulation of ergosterol biosynthetic process [Evidence IMP] [PMID 24164706]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; Rri1p complement(2242438..2243550) Sugiyamaella lignohabitans 30036535 AWJ20_4407 CDS AWJ20_4407 NC_031671.1 2244772 2247237 D uncharacterized protein 2244772..2247237 Sugiyamaella lignohabitans 30036536 AWJ20_4408 CDS PBN1 NC_031671.1 2247390 2248109 R Component of glycosylphosphatidylinositol-mannosyltransferase I; essential component; required for the autocatalytic post-translational processing of the protease B precursor Prb1p; localizes to ER in lumenal orientation; homolog of mammalian PIG-X; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 9649520]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IMP] [PMID 15635094]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16418276]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 15635094]; GO_process: GO:0016485 - protein processing [Evidence IMP] [PMID 9649520]; Pbn1p complement(2247390..2248109) Sugiyamaella lignohabitans 30036537 AWJ20_4409 CDS AWJ20_4409 NC_031671.1 2250779 2251789 D uncharacterized protein 2250779..2251789 Sugiyamaella lignohabitans 30036538 AWJ20_4410 CDS RGD2 NC_031671.1 2252126 2254819 R GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p; relocalizes from bud neck to cytoplasm upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 11591390]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IC,IPI] [PMID 11591390]; Rgd2p complement(2252126..2254819) Sugiyamaella lignohabitans 30036540 AWJ20_4411 CDS ASG1 NC_031671.1 2257298 2260183 D Zinc cluster protein proposed to be a transcriptional regulator; regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Asg1p 2257298..2260183 Sugiyamaella lignohabitans 30036541 AWJ20_4412 CDS RIB1 NC_031671.1 2260396 2262627 R GTP cyclohydrolase II; catalyzes the first step of the riboflavin biosynthesis pathway; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA,IEA]; GO_function: GO:0019238 - cyclohydrolase activity [Evidence IGI,IMP] [PMID 4555411]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 4555411]; GO_process: GO:0009231 - riboflavin biosynthetic process [Evidence IMP] [PMID 5366000]; GTP cyclohydrolase II complement(2260396..2262627) Sugiyamaella lignohabitans 30036542 AWJ20_4413 CDS AWJ20_4413 NC_031671.1 2264645 2265148 D uncharacterized protein 2264645..2265148 Sugiyamaella lignohabitans 30036543 AWJ20_4414 CDS RRT2 NC_031671.1 2266161 2267450 R Methylesterase performing penultimate step of diphthamide biosynthesis; hydrolyzes methylated diphthine to produce diphthine and allows Dph6-catalyzed amidation reaction to occur; deletion leads to resistance to sordarin and accumulation of methylatediphthine; WD40 domain-containing protein; involved in endosomal recycling; forms complex with Rtt10p that functions in retromer-mediated pathway for recycling internalized cell-surface proteins; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21880895]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 21880895]; GO_function: GO:0032451 - demethylase activity [Evidence IDA,IMP] [PMID 24739148]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 21880895]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA]; GO_process: GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IMP] [PMID 22188241]; diphthamide synthase complement(2266161..2267450) Sugiyamaella lignohabitans 30036544 AWJ20_4415 CDS AWJ20_4415 NC_031671.1 2270766 2271950 D Molybdenum cofactor biosynthesis protein A 2270766..2271950 Sugiyamaella lignohabitans 30036545 AWJ20_4416 CDS ERP3 NC_031671.1 2272077 2272652 D Molybdenum cofactor biosynthesis protein C 2272077..2272652 Sugiyamaella lignohabitans 30036546 AWJ20_4418 CDS DOP98 NC_031671.1 2273945 2274283 D one of two genes similar to Amanita muscaria DOPA-dioxygenase; allele of CaO19.8608; putative DOPA-dioxygenase 2273945..2274283 Sugiyamaella lignohabitans 30036548 AWJ20_4419 CDS DOM34 NC_031671.1 2274543 2275703 D Protein that facilitates ribosomal subunit dissociation; Dom34-Hbs1 complex and Rli1p have roles in dissociating inactive ribosomes to facilitate translation restart, particularly ribosomes stalled in 3' UTRs; required for RNA cleavage in no-go decay, but reports conflict on endonuclease activity; Pelota ortholog; protein abundance increases in response to DNA replication stress; DOM34 has a paralog, YCL001W-B, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 17889667]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 19420139]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 21623367]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 19481524]; GO_process: GO:0000294 - nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay [Evidence IDA] [PMID 17889667]; GO_process: GO:0070966 - nuclear-transcribed mRNA catabolic process, no-go decay [Evidence IGI] [PMID 16554824]; GO_process: GO:0070966 - nuclear-transcribed mRNA catabolic process, no-go decay [Evidence IMP] [PMID 19420139]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0045727 - positive regulation of translation [Evidence IMP] [PMID 24424461]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0032790 - ribosome disassembly [Evidence IDA] [PMID 20947765]; GO_process: GO:0032790 - ribosome disassembly [Evidence IMP] [PMID 22770215]; GO_process: GO:0032790 - ribosome disassembly [Evidence IDA,IMP] [PMID 24424461]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosome dissociation factor DOM34 2274543..2275703 Sugiyamaella lignohabitans 30036549 AWJ20_4420 CDS SNF3 NC_031671.1 2276507 2277661 D Plasma membrane low glucose sensor, regulates glucose transport; contains 12 predicted transmembrane segments and a long C-terminal tail required for induction of hexose transporters; also senses fructose and mannose; SNF3 has a paralog, RGT2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2406560]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0005536 - glucose binding [Evidence TAS] [PMID 10477308]; GO_function: GO:0005355 - glucose transmembrane transporter activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0004872 - receptor activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0051594 - detection of glucose [Evidence IGI,IMP] [PMID 8901598]; GO_process: GO:0015755 - fructose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IGI] [PMID 9564039]; GO_process: GO:0015761 - mannose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 18616605]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 10477308]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Snf3p 2276507..2277661 Sugiyamaella lignohabitans 30036551 AWJ20_4421 CDS AWJ20_4421 NC_031671.1 2277959 2278162 D uncharacterized protein 2277959..2278162 Sugiyamaella lignohabitans 30036552 AWJ20_4422 CDS AWJ20_4422 NC_031671.1 2278558 2279526 D uncharacterized protein 2278558..2279526 Sugiyamaella lignohabitans 30036553 AWJ20_4423 CDS coq9 NC_031671.1 2280776 2281357 R ubiquinone biosynthesis protein Coq9 (predicted) complement(2280776..2281357) Sugiyamaella lignohabitans 30036554 AWJ20_4424 CDS FAR10 NC_031671.1 2282230 2284548 D Protein involved in recovery from arrest in response to pheromone; acts in a cell cycle arrest recovery pathway independent from Far1p; interacts with Far3p, Far7p, Far8p, Far9p, and Far11p; potential Cdc28p substrate; FAR10 has a paralog, VPS64, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 12514182]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 23625923]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000321 - re-entry into mitotic cell cycle after pheromone arrest [Evidence IGI] [PMID 12588993]; Far10p 2282230..2284548 Sugiyamaella lignohabitans 30036555 AWJ20_4425 CDS MGR3 NC_031671.1 2284858 2285790 D Subunit of the mitochondrial (mt) i-AAA protease supercomplex; i-AAA degrades misfolded mitochondrial proteins; forms a subcomplex with Mgr1p that binds to substrates to facilitate proteolysis; required for growth of cells lacking mtDNA; GO_component: GO:0031942 - i-AAA complex [Evidence IDA] [PMID 18843051]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 18843051]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051787 - misfolded protein binding [Evidence IDA] [PMID 18843051]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 18843051]; Mgr3p 2284858..2285790 Sugiyamaella lignohabitans 30036556 AWJ20_4426 CDS AWJ20_4426 NC_031671.1 2286204 2286602 D uncharacterized protein 2286204..2286602 Sugiyamaella lignohabitans 30036557 AWJ20_4427 CDS AWJ20_4427 NC_031671.1 2286888 2287433 R uncharacterized protein complement(2286888..2287433) Sugiyamaella lignohabitans 30036558 AWJ20_4428 CDS FOL3 NC_031671.1 2290605 2291834 R Dihydrofolate synthetase, involved in folic acid biosynthesis; catalyzes conversion of dihydropteroate to dihydrofolate in folate coenzyme biosynthesis; FOL3 has a paralog, RMA1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008841 - dihydrofolate synthase activity [Evidence IEA]; GO_function: GO:0008841 - dihydrofolate synthase activity [Evidence IMP] [PMID 11731153]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004326 - tetrahydrofolylpolyglutamate synthase activity [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006761 - dihydrofolate biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IMP] [PMID 11731153]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0046901 - tetrahydrofolylpolyglutamate biosynthetic process [Evidence IEA]; dihydrofolate synthase complement(2290605..2291834) Sugiyamaella lignohabitans 30036559 AWJ20_4429 CDS RPO41 NC_031671.1 2293027 2295939 D similar to Saccharomyces cerevisiae S288c NP_116617.1; Rpo41p 2293027..2295939 Sugiyamaella lignohabitans 30036560 AWJ20_4430 CDS ELO1 NC_031671.1 2297411 2298451 D Elongase I, medium-chain acyl elongase; catalyzes carboxy-terminal elongation of unsaturated C12-C16 fatty acyl-CoAs to C16-C18 fatty acids; ELO1 has a paralog, FEN1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 8702485]; GO_function: GO:0009922 - fatty acid elongase activity [Evidence IMP] [PMID 12684876]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0019368 - fatty acid elongation, unsaturated fatty acid [Evidence IMP] [PMID 10850979]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; fatty acid elongase ELO1 2297411..2298451 Sugiyamaella lignohabitans 30036562 AWJ20_4431 CDS STL1 NC_031671.1 2299717 2301507 D glucose-inactivated glycerol proton symporter STL1 2299717..2301507 Sugiyamaella lignohabitans 30036563 AWJ20_4432 CDS TRM8 NC_031671.1 2305254 2305874 R Noncatalytic subunit of a tRNA methyltransferase complex; Trm8p and Trm82p comprise an enzyme that catalyzes a methyl-transfer from S-adenosyl-l-methionine to the N(7) atom of guanine at position 46 in tRNA; Trm8 lacks catalytic activity if not bound to Trm82p; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0043527 - tRNA methyltransferase complex [Evidence IDA] [PMID 12403464]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IMP] [PMID 12403464]; GO_function: GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IDA] [PMID 17382321]; GO_function: GO:0000049 - tRNA binding [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0036265 - RNA (guanine-N7)-methylation [Evidence IEA,IEA,IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IMP] [PMID 12403464]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 17382321]; GO_process: GO:0006400 - tRNA modification [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; Trm8p complement(2305254..2305874) Sugiyamaella lignohabitans 30036564 AWJ20_4433 CDS CPS1 NC_031671.1 2307112 2308890 D Vacuolar carboxypeptidase S; expression is induced under low-nitrogen conditions; GO_component: GO:0000328 - fungal-type vacuole lumen [Evidence IDA] [PMID 1569061]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IMP] [PMID 2026161]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IMP] [PMID 2026161]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IMP] [PMID 2026161]; Cps1p 2307112..2308890 Sugiyamaella lignohabitans 30036565 AWJ20_4434 CDS AYR1 NC_031671.1 2309070 2309897 R Bifunctional triacylglycerol lipase and 1-acyl DHAP reductase; NADPH-dependent 1-acyl dihydroxyacetone phosphate reductase involved in phosphatidic acid biosynthesis; lipid droplet triacylglycerol lipase involved in the mobilization of non-polar lipids; found in lipid particles, the endoplasmic reticulum and the mitochondrial outer membrane; required for spore germination; role in cell wall biosynthesis; capable of metabolizing steroid hormones; oleic acid inducible; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10617610]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10617610]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0000140 - acylglycerone-phosphate reductase activity [Evidence IEA]; GO_function: GO:0000140 - acylglycerone-phosphate reductase activity [Evidence IMP] [PMID 10617610]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IGI,IMP] [PMID 24187129]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006654 - phosphatidic acid biosynthetic process [Evidence IMP] [PMID 10617610]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IGI] [PMID 24187129]; acylglycerone-phosphate reductase complement(2309070..2309897) Sugiyamaella lignohabitans 30036566 AWJ20_4435 CDS AWJ20_4435 NC_031671.1 2310141 2311646 D uncharacterized protein 2310141..2311646 Sugiyamaella lignohabitans 30036567 AWJ20_4436 CDS PPM1 NC_031671.1 2311686 2312504 R Carboxyl methyltransferase; methylates the C terminus of the protein phosphatase 2A catalytic subunit (Pph21p or Pph22p), which is important for complex formation with regulatory subunits; required for methionine to inhibit autophagy and promote growth; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0018423 - protein C-terminal leucine carboxyl O-methyltransferase activity [Evidence IMP] [PMID 11060018]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006481 - C-terminal protein methylation [Evidence IMP] [PMID 11060018]; GO_process: GO:0043623 - cellular protein complex assembly [Evidence IMP] [PMID 11060018]; GO_process: GO:0032259 - methylation [Evidence IEA,IEA]; GO_process: GO:0010506 - regulation of autophagy [Evidence IMP] [PMID 23870128]; Ppm1p complement(2311686..2312504) Sugiyamaella lignohabitans 30036568 AWJ20_4437 CDS AWJ20_4437 NC_031671.1 2312541 2312846 R uncharacterized protein complement(2312541..2312846) Sugiyamaella lignohabitans 30036569 AWJ20_4438 CDS AWJ20_4438 NC_031671.1 2313368 2314573 D uncharacterized protein 2313368..2314573 Sugiyamaella lignohabitans 30036570 AWJ20_4439 CDS SEC31 NC_031671.1 2314963 2318809 R Component of the Sec13p-Sec31p complex of the COPII vesicle coat; COPII coat is required for vesicle formation in ER to Golgi transport; mutant has increased aneuploidy tolerance; GO_component: GO:0030127 - COPII vesicle coat [Evidence IDA] [PMID 8004676]; GO_component: GO:0012507 - ER to Golgi transport vesicle membrane [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 17604721]; GO_process: GO:0090114 - COPII-coated vesicle budding [Evidence IMP] [PMID 12475940]; GO_process: GO:0090114 - COPII-coated vesicle budding [Evidence IDA] [PMID 8223424]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sec31p complement(join(2314963..2318539,2318598..2318809)) Sugiyamaella lignohabitans 30036571 AWJ20_4440 CDS AWJ20_4440 NC_031671.1 2319259 2319795 D uncharacterized protein 2319259..2319795 Sugiyamaella lignohabitans 30036573 AWJ20_4441 CDS SLT2 NC_031671.1 2321300 2321626 R Serine/threonine MAP kinase; involved in regulating maintenance of cell wall integrity, cell cycle progression, and nuclear mRNA retention in heat shock; required for mitophagy and pexophagy; affects recruitment of mitochondria to phagophore assembly site (PAS); plays a role in adaptive response of cells to cold; regulated by the PKC1-mediated signaling pathway; SLT2 has a paralog, KDX1, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12361575]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 23924898]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 23924898]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12361575]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 23924898]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence ISS] [PMID 8386319]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 20823268]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IDA] [PMID 24554767]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0000165 - MAPK cascade [Evidence IEA,IEA]; GO_process: GO:0030969 - UFP-specific transcription factor mRNA processing involved in endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 18971375]; GO_process: GO:0000917 - barrier septum assembly [Evidence IGI] [PMID 19633265]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IDA,IMP] [PMID 16380504]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IGI] [PMID 16524906]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20385774]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 14703512]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IMP] [PMID 20219973]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 17302939]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IGI,IMP] [PMID 8386319]; GO_process: GO:0042990 - regulation of transcription factor import into nucleus [Evidence IMP] [PMID 20219973]; GO_process: GO:0001101 - response to acid [Evidence IMP] [PMID 16087742]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 8386319]; mitogen-activated serine/threonine-protein kinase SLT2 complement(2321300..2321626) Sugiyamaella lignohabitans 30036574 AWJ20_4442 CDS AWJ20_4442 NC_031671.1 2322706 2323311 D uncharacterized protein 2322706..2323311 Sugiyamaella lignohabitans 30036575 AWJ20_4443 CDS ARO7 NC_031671.1 2325220 2325630 D Chorismate mutase; catalyzes the conversion of chorismate to prephenate to initiate the tyrosine/phenylalanine-specific branch of aromatic amino acid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004106 - chorismate mutase activity [Evidence IEA,IEA]; GO_function: GO:0004106 - chorismate mutase activity [Evidence IDA] [PMID 3027508]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_process: GO:0009094 - L-phenylalanine biosynthetic process [Evidence IC,IMP] [PMID 3027508]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0046417 - chorismate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006571 - tyrosine biosynthetic process [Evidence IC,IMP] [PMID 3027508]; chorismate mutase ARO7 2325220..2325630 Sugiyamaella lignohabitans 30036576 AWJ20_4444 CDS YMC1 NC_031671.1 2325865 2326494 R Putative mitochondrial inner membrane transporter; proposed role in oleate metabolism and glutamate biosynthesis; member of the mitochondrial carrier (MCF) family; localizes to vacuole in response to H2O2; YMC1 has a paralog, YMC2, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23509072]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16140254]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005342 - organic acid transmembrane transporter activity [Evidence IGI,ISS] [PMID 16140254]; GO_process: GO:0006839 - mitochondrial transport [Evidence IGI] [PMID 16140254]; GO_process: GO:0006810 - transport [Evidence IEA]; Ymc1p complement(2325865..2326494) Sugiyamaella lignohabitans 30036577 AWJ20_4445 CDS VID24 NC_031671.1 2328510 2329514 D GID Complex regulatory subunit; binds GID Complex in response to glucose through interactions with complex member Vid28p; regulates fructose-1,6-bisphosphatase (FBPase) targeting to the vacuole; promotes proteasome-dependent catabolite degradation of FBPase; peripheral membrane protein located at Vid (vacuole import and degradation) vesicles; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 16872538]; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 18508925]; GO_component: GO:0016023 - cytoplasmic membrane-bounded vesicle [Evidence IDA] [PMID 9508768]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 9508768]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 15358789]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12730205]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 9508768]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 15358789]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence IMP] [PMID 9508768]; glucose-induced degradation complex subunit VID24 2328510..2329514 Sugiyamaella lignohabitans 30036578 AWJ20_4446 CDS DLD1 NC_031671.1 2329808 2331589 R D-lactate dehydrogenase; oxidizes D-lactate to pyruvate, transcription is heme-dependent, repressed by glucose, and derepressed in ethanol or lactate; located in the mitochondrial inner membrane; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9525904]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IMP,ISS] [PMID 8492799]; GO_function: GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8492799]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Dld1p complement(2329808..2331589) Sugiyamaella lignohabitans 30036579 AWJ20_4447 CDS ERG25 NC_031671.1 2332724 2333389 D C-4 methyl sterol oxidase; catalyzes the first of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis; mutants accumulate the sterol intermediate 4,4-dimethylzymosterol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 8663358]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8663358]; GO_function: GO:0000254 - C-4 methylsterol oxidase activity [Evidence IEA]; GO_function: GO:0000254 - C-4 methylsterol oxidase activity [Evidence IDA] [PMID 8663358]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 8663358]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA]; methylsterol monooxygenase 2332724..2333389 Sugiyamaella lignohabitans 30036580 AWJ20_4448 CDS TOP3 NC_031671.1 2338403 2339182 D DNA Topoisomerase III; conserved protein that functions in a complex with Sgs1p and Rmi1p to relax single-stranded negatively-supercoiled DNA preferentially; DNA catenation/decatenation activity stimulated by RPA and Sgs1p-Top2p-Rmi1p; involved in telomere stability and regulation of mitotic recombination; GO_component: GO:0031422 - RecQ helicase-Topo III complex [Evidence IPI] [PMID 15889139]; GO_component: GO:0031422 - RecQ helicase-Topo III complex [Evidence IDA] [PMID 15899853]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 1324925]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IDA] [PMID 22885009]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IEA,IEA]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IDA] [PMID 1324925]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IDA] [PMID 22885009]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 17571075]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IGI,IMP] [PMID 1328869]; GO_process: GO:0000018 - regulation of DNA recombination [Evidence IMP] [PMID 1328869]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IMP] [PMID 7708702]; DNA topoisomerase 3 2338403..2339182 Sugiyamaella lignohabitans 30036581 AWJ20_4449 CDS TOP3 NC_031671.1 2339215 2340084 D DNA Topoisomerase III; conserved protein that functions in a complex with Sgs1p and Rmi1p to relax single-stranded negatively-supercoiled DNA preferentially; DNA catenation/decatenation activity stimulated by RPA and Sgs1p-Top2p-Rmi1p; involved in telomere stability and regulation of mitotic recombination; GO_component: GO:0031422 - RecQ helicase-Topo III complex [Evidence IPI] [PMID 15889139]; GO_component: GO:0031422 - RecQ helicase-Topo III complex [Evidence IDA] [PMID 15899853]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 1324925]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IDA] [PMID 22885009]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IEA,IEA]; GO_function: GO:0003917 - DNA topoisomerase type I activity [Evidence IDA] [PMID 1324925]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IDA] [PMID 22885009]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 17571075]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IGI,IMP] [PMID 1328869]; GO_process: GO:0000018 - regulation of DNA recombination [Evidence IMP] [PMID 1328869]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IMP] [PMID 7708702]; DNA topoisomerase 3 2339215..2340084 Sugiyamaella lignohabitans 30036582 AWJ20_4450 CDS NUP42 NC_031671.1 2340212 2342455 R FG-nucleoporin NUP42 complement(2340212..2342455) Sugiyamaella lignohabitans 30036584 AWJ20_4451 CDS AWJ20_4451 NC_031671.1 2344753 2345187 R uncharacterized protein complement(2344753..2345187) Sugiyamaella lignohabitans 30036585 AWJ20_4452 CDS AWJ20_4452 NC_031671.1 2345937 2347082 R putative esterase complement(2345937..2347082) Sugiyamaella lignohabitans 30036586 AWJ20_4453 CDS DSD1 NC_031671.1 2348096 2349337 R D-serine dehydratase (aka D-serine ammonia-lyase); converts D-serine to pyruvate and ammonia by a reaction dependent on pyridoxal 5'-phosphate and zinc; may play a role in D-serine detoxification; L-serine is not a substrate; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008721 - D-serine ammonia-lyase activity [Evidence IEA]; GO_function: GO:0008721 - D-serine ammonia-lyase activity [Evidence IDA] [PMID 17869212]; GO_function: GO:0008721 - D-serine ammonia-lyase activity [Evidence IDA] [PMID 17937657]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0070178 - D-serine metabolic process [Evidence IMP] [PMID 17937657]; D-serine ammonia-lyase DSD1 complement(2348096..2349337) Sugiyamaella lignohabitans 30036587 AWJ20_4454 CDS set8 NC_031671.1 2349925 2351553 R lysine methyltransferase Set8 (predicted) complement(2349925..2351553) Sugiyamaella lignohabitans 30036588 AWJ20_4455 CDS HCR1 NC_031671.1 2351971 2352708 D eIF3j component of translation initiation factor 3 (eIF3); dual function protein involved in translation initiation as a substoichiometric component (eIF3j) of eIF3; required for processing of 20S pre-rRNA; required at post-transcriptional step for efficient retrotransposition; absence results in decreased Ty1 Gag:GFP protein levels; binds to eIF3 subunits Rpg1p and Prt1p and 18S rRNA; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA,IEA]; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IEA,IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IPI] [PMID 11179233]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IPI,ISS] [PMID 11179233]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IPI,ISS] [PMID 11179233]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11560931]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; Hcr1p 2351971..2352708 Sugiyamaella lignohabitans 30036589 AWJ20_4456 CDS AWJ20_4456 NC_031671.1 2354132 2356783 R Csc1p complement(2354132..2356783) Sugiyamaella lignohabitans 30036590 AWJ20_4457 CDS AWJ20_4457 NC_031671.1 2357336 2360158 R mRNA cleavage and polyadenylation specificity factor complex associated protein complement(2357336..2360158) Sugiyamaella lignohabitans 30036591 AWJ20_4458 CDS MSS116 NC_031671.1 2362866 2365043 D Mitochondrial transcription elongation factor; DEAD-box protein; required for efficient splicing of mitochondrial Group I and II introns; non-polar RNA helicase that also facilities strand annealing; promotes RNA folding by stabilizing an early assembly intermediate; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IMP] [PMID 2535893]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 17081564]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 17081564]; GO_function: GO:0033592 - RNA strand annealing activity [Evidence IDA] [PMID 17081564]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000372 - Group I intron splicing [Evidence IMP] [PMID 15618406]; GO_process: GO:0000373 - Group II intron splicing [Evidence IMP] [PMID 15618406]; GO_process: GO:0000373 - Group II intron splicing [Evidence IDA] [PMID 17081564]; GO_process: GO:0034337 - RNA folding [Evidence IMP] [PMID 21045551]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006392 - transcription elongation from mitochondrial promoter [Evidence IDA,IMP] [PMID 24732805]; Mss116p 2362866..2365043 Sugiyamaella lignohabitans 30036592 AWJ20_4459 CDS NRP1 NC_031671.1 2365325 2366908 R Putative RNA binding hypothetical protein; localizes to stress granules induced by glucose deprivation; predicted to be involved in ribosome biogenesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; Nrp1p complement(2365325..2366908) Sugiyamaella lignohabitans 30036593 AWJ20_4460 CDS VPS34 NC_031671.1 2368160 2370664 D Phosphatidylinositol (PI) 3-kinase that synthesizes PI-3-phosphate; forms membrane-associated signal transduction complex with Vps15p to regulate protein sorting; activated by the GTP-bound form of Gpa1p; a fraction is localized, with Vps15p, to nuclear pores at nucleus-vacuole junctions and may facilitate transcription elongation for genes positioned at the nuclear periphery; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 16421251]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 16421251]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 23335340]; GO_component: GO:0071561 - nucleus-vacuole junction [Evidence IDA] [PMID 23335340]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 21121900]; GO_component: GO:0034271 - phosphatidylinositol 3-kinase complex I [Evidence IDA] [PMID 11157979]; GO_component: GO:0034272 - phosphatidylinositol 3-kinase complex II [Evidence IDA] [PMID 11157979]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IDA] [PMID 16421251]; GO_function: GO:0016303 - 1-phosphatidylinositol-3-kinase activity [Evidence IEA,IEA]; GO_function: GO:0016303 - 1-phosphatidylinositol-3-kinase activity [Evidence IDA] [PMID 7989323]; GO_function: GO:0016303 - 1-phosphatidylinositol-3-kinase activity [Evidence IDA,IMP] [PMID 8385367]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 7989323]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 21121900]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 7989323]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA,IMP] [PMID 8385367]; GO_process: GO:0036092 - phosphatidylinositol-3-phosphate biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0048015 - phosphatidylinositol-mediated signaling [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 23335340]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 7989323]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; phosphatidylinositol 3-kinase VPS34 2368160..2370664 Sugiyamaella lignohabitans 30036595 AWJ20_4461 CDS SFA1 NC_031671.1 2370798 2371934 R Bifunctional alcohol dehydrogenase and formaldehyde dehydrogenase; formaldehyde dehydrogenase activity is glutathione-dependent; functions in formaldehyde detoxification and formation of long chain and complex alcohols, regulated by Hog1p-Sko1p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IDA] [PMID 8483449]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IMP] [PMID 12499363]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IDA] [PMID 8483449]; GO_function: GO:0033833 - hydroxymethylfurfural reductase (NADH) activity [Evidence IMP] [PMID 16652391]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000947 - amino acid catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0006069 - ethanol oxidation [Evidence IEA]; GO_process: GO:0046294 - formaldehyde catabolic process [Evidence IDA] [PMID 8483449]; GO_process: GO:0033859 - furaldehyde metabolic process [Evidence IMP] [PMID 16652391]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; bifunctional alcohol dehydrogenase/S-(hydroxymethyl)glutathione dehydrogenase complement(2370798..2371934) Sugiyamaella lignohabitans 30036596 AWJ20_4462 CDS AWJ20_4462 NC_031671.1 2370879 2371415 D uncharacterized protein 2370879..2371415 Sugiyamaella lignohabitans 30036597 AWJ20_4463 CDS CAB5 NC_031671.1 2372588 2373310 R Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC); subunits of this complex are: Cab2p, Cab3p, Cab4p, Cab5p, Sis2p and Vhs3p; probable dephospho-CoA kinase (DPCK) that catalyzes the last step in coenzyme A biosynthesis; null mutant lethality is complemented by E. coli coaE (encoding DPCK); detected in purified mitochondria in high-throughput studies; also localized to lipid droplets; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14690591]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004140 - dephospho-CoA kinase activity [Evidence IEA,IEA]; GO_function: GO:0004140 - dephospho-CoA kinase activity [Evidence ISS] [PMID 10592175]; GO_function: GO:0004140 - dephospho-CoA kinase activity [Evidence ISS] [PMID 14690591]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 10592175]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IGI] [PMID 19266201]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; putative dephospho-CoA kinase complement(2372588..2373310) Sugiyamaella lignohabitans 30036598 AWJ20_4464 CDS PAN5 NC_031671.1 2374449 2377097 D 2-dehydropantoate 2-reductase; part of the pantothenic acid pathway, structurally homologous to E. coli panE; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA,IEA]; GO_function: GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence ISS] [PMID 11154694]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0015940 - pantothenate biosynthetic process [Evidence ISS] [PMID 11154694]; 2-dehydropantoate 2-reductase PAN5 2374449..2377097 Sugiyamaella lignohabitans 30036599 AWJ20_4465 CDS RKM2 NC_031671.1 2377286 2378401 R Ribosomal protein lysine methyltransferase; responsible for trimethylation of the lysine residue at position 3 of Rpl12Ap and Rpl12Bp; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016279 - protein-lysine N-methyltransferase activity [Evidence IDA] [PMID 17005568]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0018026 - peptidyl-lysine monomethylation [Evidence IDA] [PMID 17005568]; GO_process: GO:0018023 - peptidyl-lysine trimethylation [Evidence IMP] [PMID 17005568]; Rkm2p complement(2377286..2378401) Sugiyamaella lignohabitans 30036600 AWJ20_4466 CDS AWJ20_4466 NC_031671.1 2379023 2379430 D uncharacterized protein 2379023..2379430 Sugiyamaella lignohabitans 30036601 AWJ20_4467 CDS UBR1 NC_031671.1 2379826 2385129 D E3 ubiquitin ligase (N-recognin); heterodimerizes with Rad6p to ubiquitinate substrates in the N-end rule pathway; role in endoplasmic reticulum-associated protein degradation (ERAD) in the absence of canonical ER membrane ligases or after stress; major role in targeting misfolded cytosolic proteins for degradation; regulates peptide transport via Cup9p ubiquitination; mutation in human UBR1 causes Johansson-Blizzard Syndrome (JBS); GO_component: GO:0005737 - cytoplasm [Evidence IGI,IMP] [PMID 20080635]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IPI] [PMID 10688918]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 10581257]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IGI,IMP] [PMID 23988329]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20080635]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 22670231]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IMP] [PMID 10581257]; GO_process: GO:0000209 - protein polyubiquitination [Evidence IMP] [PMID 2209542]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0090089 - regulation of dipeptide transport [Evidence IMP] [PMID 9427760]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:0071596 - ubiquitin-dependent protein catabolic process via the N-end rule pathway [Evidence IMP] [PMID 2209542]; E3 ubiquitin-protein ligase UBR1 2379826..2385129 Sugiyamaella lignohabitans 30036602 AWJ20_4468 CDS TYS1 NC_031671.1 2385618 2386805 R Cytoplasmic tyrosyl-tRNA synthetase; required for cytoplasmic protein synthesis; interacts with positions 34 and 35 of the tRNATyr anticodon; mutations in human ortholog YARS are associated with Charcot-Marie-Tooth (CMT) neuropathies; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11359929]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA,IMP,ISS] [PMID 11359929]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004831 - tyrosine-tRNA ligase activity [Evidence IDA] [PMID 782885]; GO_function: GO:0004831 - tyrosine-tRNA ligase activity [Evidence IDA,ISS] [PMID 8509419]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IDA] [PMID 782885]; GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IDA] [PMID 8509419]; tyrosine--tRNA ligase TYS1 complement(2385618..2386805) Sugiyamaella lignohabitans 30036603 AWJ20_4469 CDS AWJ20_4469 NC_031671.1 2387178 2387471 D mago nashi protein 2387178..2387471 Sugiyamaella lignohabitans 30036604 AWJ20_4470 CDS AWJ20_4470 NC_031671.1 2387508 2387765 D mago nashi protein 2387508..2387765 Sugiyamaella lignohabitans 30036606 AWJ20_4471 CDS AWJ20_4471 NC_031671.1 2388876 2390291 D fun thirty related protein Fft1 2388876..2390291 Sugiyamaella lignohabitans 30036607 AWJ20_4472 CDS FUN30 NC_031671.1 2390625 2392220 D DNA-dependent ATPase FUN30 2390625..2392220 Sugiyamaella lignohabitans 30036608 AWJ20_4473 CDS ATS1 NC_031671.1 2393514 2394632 D Protein required for modification of wobble nucleosides in tRNA; acts with Elongator complex, Kti11p, and Kti12p; has a potential role in regulatory interactions between microtubules and the cell cycle; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 13680156]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 18466297]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI,IMP] [PMID 13680156]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IGI,IMP] [PMID 13680156]; GO_process: GO:0007017 - microtubule-based process [Evidence IGI,ISS] [PMID 8070652]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; Ats1p 2393514..2394632 Sugiyamaella lignohabitans 30036609 AWJ20_4474 CDS CDC7 NC_031671.1 2395693 2397702 D serine/threonine protein kinase CDC7 2395693..2397702 Sugiyamaella lignohabitans 30036610 AWJ20_4475 CDS AWJ20_4475 NC_031671.1 2397989 2398939 D Pre-mRNA-splicing factor CWC21 2397989..2398939 Sugiyamaella lignohabitans 30036611 AWJ20_4476 CDS UGA2 NC_031671.1 2399040 2400572 R Succinate semialdehyde dehydrogenase; involved in the utilization of gamma-aminobutyrate (GABA) as a nitrogen source; part of the 4-aminobutyrate and glutamate degradation pathways; localized to the cytoplasm; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IEA,IEA]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IMP,ISS] [PMID 11031268]; GO_function: GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IMP] [PMID 3888627]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11031268]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEA,IEA]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEP,IMP,ISS] [PMID 11031268]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 3888627]; GO_process: GO:0006540 - glutamate decarboxylation to succinate [Evidence IGI,IMP,ISS] [PMID 11031268]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; succinate-semialdehyde dehydrogenase (NAD(P)(+)) complement(2399040..2400572) Sugiyamaella lignohabitans 30036612 AWJ20_4477 CDS TNA1 NC_031671.1 2401082 2402569 R High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p complement(2401082..2402569) Sugiyamaella lignohabitans 30036613 AWJ20_4478 CDS AWJ20_4478 NC_031671.1 2403328 2405571 R uncharacterized protein complement(2403328..2405571) Sugiyamaella lignohabitans 30036614 AWJ20_4479 CDS TKL1 NC_031671.1 2406896 2408935 D Transketolase; catalyzes conversion of xylulose-5-phosphate and ribose-5-phosphate to sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate in the pentose phosphate pathway; needed for synthesis of aromatic amino acids; TKL1 has a paralog, TKL2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence ISS] [PMID 2843500]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0004802 - transketolase activity [Evidence IEA,IEA]; GO_function: GO:0004802 - transketolase activity [Evidence IMP,ISS] [PMID 8226984]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence IMP] [PMID 8299150]; GO_process: GO:0006098 - pentose-phosphate shunt [Evidence TAS] [PMID 8534086]; transketolase TKL1 2406896..2408935 Sugiyamaella lignohabitans 30036615 AWJ20_4480 CDS COG3 NC_031671.1 2409994 2412699 R Essential component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0017119 - Golgi transport complex [Evidence IPI] [PMID 11703943]; GO_component: GO:0005801 - cis-Golgi network [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0008565 - protein transporter activity [Evidence TAS] [PMID 12077121]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 20065092]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 10512869]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 11703943]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0016236 - macroautophagy [Evidence IMP] [PMID 20065092]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20065092]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000301 - retrograde transport, vesicle recycling within Golgi [Evidence IMP] [PMID 11703943]; GO_process: GO:0006810 - transport [Evidence IEA]; Cog3p complement(2409994..2412699) Sugiyamaella lignohabitans 30036617 AWJ20_4481 CDS TYR1 NC_031671.1 2413693 2414547 D Prephenate dehydrogenase involved in tyrosine biosynthesis; expression is dependent on phenylalanine levels; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0004665 - prephenate dehydrogenase (NADP+) activity [Evidence IEA,IEA]; GO_function: GO:0008977 - prephenate dehydrogenase activity [Evidence IEA]; GO_function: GO:0008977 - prephenate dehydrogenase activity [Evidence ISS] [PMID 2697638]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006571 - tyrosine biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006570 - tyrosine metabolic process [Evidence NAS] [PMID 11752249]; pprephenate dehydrogenase (NADP(+)) 2413693..2414547 Sugiyamaella lignohabitans 30036618 AWJ20_4482 CDS RRP8 NC_031671.1 2415080 2416276 R Nucleolar S-adenosylmethionine-dependent rRNA methyltransferase; methylates adenine (m1A) of the large subunit (LSU) rRNA at position 645; involved in pre-rRNA cleavage at site A2; mutation is synthetically lethal with a gar1 mutation; deletion disrupts telomere maintenance by influencing the expression of neighboring gene STN1; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10864042]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 23180764]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence ISS] [PMID 10864042]; GO_function: GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IMP] [PMID 23180764]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0031167 - rRNA methylation [Evidence IMP] [PMID 23180764]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IGI,IMP] [PMID 10864042]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IGI] [PMID 23180764]; Rrp8p complement(2415080..2416276) Sugiyamaella lignohabitans 30036619 AWJ20_4483 CDS AWJ20_4483 NC_031671.1 2417733 2418506 D uncharacterized protein 2417733..2418506 Sugiyamaella lignohabitans 30036620 AWJ20_4484 CDS AWJ20_4484 NC_031671.1 2418677 2418976 R uncharacterized protein complement(2418677..2418976) Sugiyamaella lignohabitans 30036621 AWJ20_4485 CDS sim3 NC_031671.1 2419676 2420620 D NASP family CENP-A chaperone 2419676..2420620 Sugiyamaella lignohabitans 30036622 AWJ20_4486 CDS AWJ20_4486 NC_031671.1 2420785 2421168 D uncharacterized protein 2420785..2421168 Sugiyamaella lignohabitans 30036623 AWJ20_4487 CDS AWJ20_4487 NC_031671.1 2424725 2426413 D uncharacterized protein 2424725..2426413 Sugiyamaella lignohabitans 30036624 AWJ20_4488 CDS IMP4 NC_031671.1 2426716 2427672 R Component of the SSU processome; SSU processome is required for pre-18S rRNA processing; interacts with Mpp10p; member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034457 - Mpp10 complex [Evidence IDA] [PMID 17515605]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12242301]; GO_function: GO:0042134 - rRNA primary transcript binding [Evidence IPI] [PMID 11864606]; GO_function: GO:0043047 - single-stranded telomeric DNA binding [Evidence IDA] [PMID 17803460]; GO_function: GO:0030515 - snoRNA binding [Evidence IDA] [PMID 15489263]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence TAS] [PMID 10690410]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Imp4p complement(join(2426716..2427564,2427670..2427672)) Sugiyamaella lignohabitans 30036625 AWJ20_4489 CDS NAM7 NC_031671.1 2428600 2431943 D ATP-dependent RNA helicase of the SFI superfamily; involved in nonsense mediated mRNA decay; required for efficient translation termination at nonsense codons and targeting of NMD substrates to P-bodies; binds to the small ribosomal subunit via an interaction with Rps26; forms cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14763985]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005844 - polysome [Evidence TAS] [PMID 10098411]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence TAS] [PMID 10322435]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence TAS] [PMID 10322435]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence TAS] [PMID 10098411]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0043024 - ribosomal small subunit binding [Evidence IDA] [PMID 23801788]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 23390378]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IGI] [PMID 16157874]; GO_process: GO:0008298 - intracellular mRNA localization [Evidence IMP] [PMID 16777600]; GO_process: GO:0000956 - nuclear-transcribed mRNA catabolic process [Evidence IMP] [PMID 16285926]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI] [PMID 12769863]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IEA,IEA]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence TAS] [PMID 10098411]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA,IMP,IPI] [PMID 18676617]; GO_process: GO:0006449 - regulation of translational termination [Evidence TAS] [PMID 10098411]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 15388879]; ATP-dependent RNA helicase NAM7 join(2428600..2429021,2429261..2431943) Sugiyamaella lignohabitans 30036626 AWJ20_4490 CDS AWJ20_4490 NC_031671.1 2436134 2438263 R S-antigen, putative complement(join(2436134..2437738,2437805..2438263)) Sugiyamaella lignohabitans 30036628 AWJ20_4491 CDS AWJ20_4491 NC_031671.1 2438819 2442226 R midasin (predicted) complement(join(2438819..2440996,2441780..2442226)) Sugiyamaella lignohabitans 30036629 AWJ20_4492 CDS BUD2 NC_031671.1 2446880 2451157 D GTPase activating factor for Rsr1p/Bud1p; plays a role in spindle position checkpoint distinct from its role in bud site selection; required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10444589]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IBA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0031235 - intrinsic component of the cytoplasmic side of the plasma membrane [Evidence IBA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA,IEA]; GO_function: GO:0005099 - Ras GTPase activator activity [Evidence IBA]; GO_function: GO:0005099 - Ras GTPase activator activity [Evidence IDA] [PMID 8371782]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 2065354]; GO_process: GO:0007120 - axial cellular bud site selection [Evidence IMP] [PMID 22558355]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 2065354]; GO_process: GO:0007163 - establishment or maintenance of cell polarity [Evidence IMP] [PMID 23783029]; GO_process: GO:0030447 - filamentous growth [Evidence IMP] [PMID 15645503]; GO_process: GO:0036267 - invasive filamentous growth [Evidence IMP] [PMID 23783029]; GO_process: GO:0031578 - mitotic spindle orientation checkpoint [Evidence IMP] [PMID 22558355]; GO_process: GO:0046580 - negative regulation of Ras protein signal transduction [Evidence IBA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA,IEA]; GO_process: GO:0032320 - positive regulation of Ras GTPase activity [Evidence IBA]; GO_process: GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Bud2p 2446880..2451157 Sugiyamaella lignohabitans 30036630 AWJ20_4493 CDS AWJ20_4493 NC_031671.1 2451551 2454400 R uncharacterized protein complement(2451551..2454400) Sugiyamaella lignohabitans 30036631 AWJ20_4494 CDS AWJ20_4494 NC_031671.1 2457174 2457710 R uncharacterized protein complement(2457174..2457710) Sugiyamaella lignohabitans 30036632 AWJ20_4495 CDS TOP2 NC_031671.1 2458838 2459821 D Topoisomerase II; relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone of both positively and negatively supercoiled DNA; cleaves complementary strands; localizes to axial cores in meiosis; required for replication slow zone (RSZ) breakage following Mec1p inactivation; GO_component: GO:0097047 - DNA replication termination region [Evidence IPI] [PMID 20797631]; GO_component: GO:0009330 - DNA topoisomerase complex (ATP-hydrolyzing) [Evidence IBA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 6088500]; GO_component: GO:0000795 - synaptonemal complex [Evidence IDA] [PMID 1315786]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IEA,IEA]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IDA] [PMID 6088500]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IDA] [PMID 6323017]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IBA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA,IEA]; GO_process: GO:0006259 - DNA metabolic process [Evidence IEA]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 2549254]; GO_process: GO:0006265 - DNA topological change [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IDA] [PMID 6088500]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IMP] [PMID 24062159]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IMP] [PMID 9199287]; GO_process: GO:0031055 - chromatin remodeling at centromere [Evidence IMP] [PMID 18701701]; GO_process: GO:0044774 - mitotic DNA integrity checkpoint [Evidence IMP] [PMID 16651657]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 2156624]; GO_process: GO:0000019 - regulation of mitotic recombination [Evidence IMP] [PMID 2902925]; GO_process: GO:0097046 - replication fork progression beyond termination site [Evidence IMP] [PMID 20797631]; GO_process: GO:0000712 - resolution of meiotic recombination intermediates [Evidence IBA]; GO_process: GO:0000819 - sister chromatid segregation [Evidence IBA]; DNA topoisomerase 2 2458838..2459821 Sugiyamaella lignohabitans 30036633 AWJ20_4496 CDS TOP2 NC_031671.1 2460004 2463867 D Topoisomerase II; relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone of both positively and negatively supercoiled DNA; cleaves complementary strands; localizes to axial cores in meiosis; required for replication slow zone (RSZ) breakage following Mec1p inactivation; GO_component: GO:0097047 - DNA replication termination region [Evidence IPI] [PMID 20797631]; GO_component: GO:0009330 - DNA topoisomerase complex (ATP-hydrolyzing) [Evidence IBA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 6088500]; GO_component: GO:0000795 - synaptonemal complex [Evidence IDA] [PMID 1315786]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IEA,IEA]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IDA] [PMID 6088500]; GO_function: GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity [Evidence IDA] [PMID 6323017]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IBA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA,IEA]; GO_process: GO:0006259 - DNA metabolic process [Evidence IEA]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 2549254]; GO_process: GO:0006265 - DNA topological change [Evidence IEA]; GO_process: GO:0006265 - DNA topological change [Evidence IDA] [PMID 6088500]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IMP] [PMID 24062159]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IMP] [PMID 9199287]; GO_process: GO:0031055 - chromatin remodeling at centromere [Evidence IMP] [PMID 18701701]; GO_process: GO:0044774 - mitotic DNA integrity checkpoint [Evidence IMP] [PMID 16651657]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 2156624]; GO_process: GO:0000019 - regulation of mitotic recombination [Evidence IMP] [PMID 2902925]; GO_process: GO:0097046 - replication fork progression beyond termination site [Evidence IMP] [PMID 20797631]; GO_process: GO:0000712 - resolution of meiotic recombination intermediates [Evidence IBA]; GO_process: GO:0000819 - sister chromatid segregation [Evidence IBA]; DNA topoisomerase 2 2460004..2463867 Sugiyamaella lignohabitans 30036634 AWJ20_4497 CDS AWJ20_4497 NC_031671.1 2465001 2466143 R uncharacterized protein complement(2465001..2466143) Sugiyamaella lignohabitans 30036635 AWJ20_4498 CDS AWJ20_4498 NC_031671.1 2470929 2472470 D retrotransposon-derived protein PEG10 isoform 1 2470929..2472470 Sugiyamaella lignohabitans 30036636 AWJ20_4499 CDS USV1 NC_031671.1 2481696 2483465 D Putative transcription factor containing a C2H2 zinc finger; mutation affects transcriptional regulation of genes involved in growth on non-fermentable carbon sources, response to salt stress and cell wall biosynthesis; USV1 has a paralog, RGM1, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18667581]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 18667581]; GO_process: GO:0061416 - regulation of transcription from RNA polymerase II promoter in response to salt stress [Evidence IMP] [PMID 18667581]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Usv1p 2481696..2483465 Sugiyamaella lignohabitans 30036637 AWJ20_4500 CDS SEC21 NC_031671.1 2485505 2488303 R Gamma subunit of coatomer; coatomer is a heptameric protein complex that together with Arf1p forms the COPI coat; involved in ER to Golgi transport of selective cargo; GO_component: GO:0030126 - COPI vesicle coat [Evidence IEA]; GO_component: GO:0030126 - COPI vesicle coat [Evidence IDA] [PMID 1461285]; GO_component: GO:0030663 - COPI-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 17101773]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0005198 - structural molecule activity [Evidence IEA]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 1461285]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 8001155]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA,IEA]; Sec21p complement(2485505..2488303) Sugiyamaella lignohabitans 30036640 AWJ20_4501 CDS AWJ20_4501 NC_031671.1 2490137 2490691 D uncharacterized protein 2490137..2490691 Sugiyamaella lignohabitans 30036641 AWJ20_4502 CDS YPS3 NC_031671.1 2494111 2495370 D Aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0046658 - anchored component of plasma membrane [Evidence IDA,IPI] [PMID 11016834]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0004190 - aspartic-type endopeptidase activity [Evidence IDA,ISS] [PMID 10191273]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16087741]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Yps3p 2494111..2495370 Sugiyamaella lignohabitans 30036642 AWJ20_4503 CDS DAK1 NC_031671.1 2499060 2500847 R Dihydroxyacetone kinase; required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IEA,IEA]; GO_function: GO:0004371 - glycerone kinase activity [Evidence IDA] [PMID 12401799]; GO_function: GO:0004371 - glycerone kinase activity [Evidence ISS] [PMID 9038161]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0050354 - triokinase activity [Evidence IEA]; GO_process: GO:0019588 - anaerobic glycerol catabolic process [Evidence IEA]; GO_process: GO:0097237 - cellular response to toxic substance [Evidence IMP] [PMID 12401799]; GO_process: GO:0019563 - glycerol catabolic process [Evidence ISS] [PMID 9038161]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Dak1p complement(2499060..2500847) Sugiyamaella lignohabitans 30036643 AWJ20_4504 CDS AWJ20_4504 NC_031671.1 2501542 2501976 D uncharacterized protein 2501542..2501976 Sugiyamaella lignohabitans 30036644 AWJ20_4505 CDS AWJ20_4505 NC_031671.1 2502835 2504454 D uncharacterized protein 2502835..2504454 Sugiyamaella lignohabitans 30036645 AWJ20_4506 CDS AWJ20_4506 NC_031671.1 2509307 2510023 D uncharacterized protein 2509307..2510023 Sugiyamaella lignohabitans 30036646 AWJ20_4507 CDS MRPL36 NC_031671.1 2511106 2511696 D Mitochondrial ribosomal protein of the large subunit; overproduction suppresses mutations in the COX2 leader peptide-encoding region; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; mitochondrial 54S ribosomal protein YmL36 2511106..2511696 Sugiyamaella lignohabitans 30036647 AWJ20_4508 CDS DIB1 NC_031671.1 2512212 2512643 D 17-kDa component of the U4/U6aU5 tri-snRNP; plays an essential role in pre-mRNA splicing, orthologue of hDIM1, the human U5-specific 15-kDa protein; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 10610776]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 11720284]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA,IEA]; Dib1p 2512212..2512643 Sugiyamaella lignohabitans 30036648 AWJ20_4509 CDS AAT2 NC_031671.1 2514663 2515097 D Cytosolic aspartate aminotransferase involved in nitrogen metabolism; localizes to peroxisomes in oleate-grown cells; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9288922]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA,IMP] [PMID 9288922]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IDA] [PMID 1859361]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IMP] [PMID 9288922]; GO_function: GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006532 - aspartate biosynthetic process [Evidence IMP] [PMID 15780654]; GO_process: GO:0006532 - aspartate biosynthetic process [Evidence IMP] [PMID 9288922]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; aspartate transaminase AAT2 2514663..2515097 Sugiyamaella lignohabitans 30036649 AWJ20_4510 CDS AAT2 NC_031671.1 2515415 2515891 D Cytosolic aspartate aminotransferase involved in nitrogen metabolism; localizes to peroxisomes in oleate-grown cells; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9288922]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA,IMP] [PMID 9288922]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IDA] [PMID 1859361]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IMP] [PMID 9288922]; GO_function: GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006532 - aspartate biosynthetic process [Evidence IMP] [PMID 15780654]; GO_process: GO:0006532 - aspartate biosynthetic process [Evidence IMP] [PMID 9288922]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; aspartate transaminase AAT2 2515415..2515891 Sugiyamaella lignohabitans 30036651 AWJ20_4511 CDS AWJ20_4511 NC_031671.1 2516198 2516947 R uncharacterized protein complement(2516198..2516947) Sugiyamaella lignohabitans 30036652 AWJ20_4512 CDS AWJ20_4512 NC_031671.1 2521259 2522800 D retrotransposon-derived protein PEG10 isoform 1 2521259..2522800 Sugiyamaella lignohabitans 30036653 AWJ20_4513 CDS AWJ20_4513 NC_031671.1 2529254 2530786 D uncharacterized protein 2529254..2530786 Sugiyamaella lignohabitans 30036654 AWJ20_4514 CDS FUS3 NC_031671.1 2531090 2532160 R Mitogen-activated serine/threonine protein kinase involved in mating; phosphoactivated by Ste7p; substrates include Ste12p, Far1p, Bni1p, Sst2p; inhibits invasive growth during mating by phosphorylating Tec1p, promoting its; inhibits recruitment of Ste5p, Cdc42p-mediated asymmetry and mating morphogenesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10233162]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 11781566]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 17952059]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10233162]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18417610]; GO_component: GO:0042597 - periplasmic space [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence IEA,IEA]; GO_function: GO:0004707 - MAP kinase activity [Evidence IDA] [PMID 15620357]; GO_function: GO:0004707 - MAP kinase activity [Evidence IDA] [PMID 8384702]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0000165 - MAPK cascade [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0007050 - cell cycle arrest [Evidence IMP] [PMID 10049917]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0000746 - conjugation [Evidence IEA]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 10652102]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 15620357]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 8001818]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0043409 - negative regulation of MAPK cascade [Evidence IPI] [PMID 16424299]; GO_process: GO:0010526 - negative regulation of transposition, RNA-mediated [Evidence IMP] [PMID 9566871]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IDA] [PMID 15620357]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IDA] [PMID 8384702]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0046827 - positive regulation of protein export from nucleus [Evidence IMP] [PMID 22588722]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 22588722]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 8384702]; mitogen-activated serine/threonine-protein kinase FUS3 complement(2531090..2532160) Sugiyamaella lignohabitans 30036655 AWJ20_4515 CDS RPL24B NC_031671.1 2535258 2535737 D Ribosomal 60S subunit protein L24B; not essential for translation but may be required for normal translation rate; homologous to mammalian ribosomal protein L24, no bacterial homolog; RPL24B has a paralog, RPL24A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 6337137]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; ribosomal 60S subunit protein L24B 2535258..2535737 Sugiyamaella lignohabitans 30036656 AWJ20_4516 CDS AWJ20_4516 NC_031671.1 2536390 2536974 D uncharacterized protein 2536390..2536974 Sugiyamaella lignohabitans 30036657 AWJ20_4517 CDS AWJ20_4517 NC_031671.1 2537041 2538393 R uncharacterized protein complement(2537041..2538393) Sugiyamaella lignohabitans 30036658 AWJ20_4518 CDS STU2 NC_031671.1 2540248 2543100 D Microtubule-associated protein (MAP) of the XMAP215/Dis1 family; regulates microtubule dynamics during spindle orientation and metaphase chromosome alignment; interacts with spindle pole body component Spc72p; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 11511347]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 11511347]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IDA] [PMID 11553724]; GO_component: GO:0005874 - microtubule [Evidence IEA]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 11511347]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9606209]; GO_function: GO:0008017 - microtubule binding [Evidence IMP] [PMID 11553724]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence IPI] [PMID 9606209]; GO_process: GO:0007020 - microtubule nucleation [Evidence IPI] [PMID 9153752]; GO_process: GO:0030472 - mitotic spindle organization in nucleus [Evidence IGI] [PMID 11756468]; Stu2p 2540248..2543100 Sugiyamaella lignohabitans 30036659 AWJ20_4519 CDS CIR1 NC_031671.1 2543324 2544097 R Mitochondrial protein that interacts with frataxin (Yfh1p); putative ortholog of mammalian electron transfer flavoprotein complex subunit ETF-beta; may have a role in oxidative stress response; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Cir1p complement(2543324..2544097) Sugiyamaella lignohabitans 30036660 AWJ20_4520 CDS TDA10 NC_031671.1 2545547 2546404 D ATP-binding hypothetical protein; crystal structure resembles that of E.coli pantothenate kinase and other small kinases; null mutant is sensitive to expression of the top1-T722A allele; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 14997573]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; Tda10p 2545547..2546404 Sugiyamaella lignohabitans 30036662 AWJ20_4521 CDS AWJ20_4521 NC_031671.1 2547158 2547805 D uncharacterized protein 2547158..2547805 Sugiyamaella lignohabitans 30036663 AWJ20_4522 CDS AVT2 NC_031671.1 2548493 2550112 D Putative transporter; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11274162]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11274162]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence ISS] [PMID 11274162]; Avt2p 2548493..2550112 Sugiyamaella lignohabitans 30036664 AWJ20_4523 CDS AWJ20_4523 NC_031671.1 2548963 2549253 R formin (bud-site selection/polarity protein), putative complement(2548963..2549253) Sugiyamaella lignohabitans 30036665 AWJ20_4524 CDS TOF1 NC_031671.1 2551204 2553150 R Subunit of a replication-pausing checkpoint complex; Tof1p-Mrc1p-Csm3p acts at the stalled replication fork to promote sister chromatid cohesion after DNA damage, facilitating gap repair of damaged DNA; interacts with the MCM helicase; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0000228 - nuclear chromosome [Evidence IPI] [PMID 12944972]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16103218]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI,IMP] [PMID 16219777]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 16137625]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IMP,IPI] [PMID 12944972]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IMP] [PMID 18321795]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 14742714]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 17483413]; GO_process: GO:0008156 - negative regulation of DNA replication [Evidence IEA]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 16103218]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 16418273]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 17652453]; GO_process: GO:0048478 - replication fork protection [Evidence IMP] [PMID 16418273]; GO_process: GO:0048478 - replication fork protection [Evidence IMP] [PMID 18632578]; Tof1p complement(2551204..2553150) Sugiyamaella lignohabitans 30036666 AWJ20_4525 CDS TOF1 NC_031671.1 2553465 2554604 R Subunit of a replication-pausing checkpoint complex; Tof1p-Mrc1p-Csm3p acts at the stalled replication fork to promote sister chromatid cohesion after DNA damage, facilitating gap repair of damaged DNA; interacts with the MCM helicase; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0000228 - nuclear chromosome [Evidence IPI] [PMID 12944972]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16103218]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI,IMP] [PMID 16219777]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 16137625]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IMP,IPI] [PMID 12944972]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IMP] [PMID 18321795]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 14742714]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 17483413]; GO_process: GO:0008156 - negative regulation of DNA replication [Evidence IEA]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 16103218]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 16418273]; GO_process: GO:0043111 - replication fork arrest [Evidence IMP] [PMID 17652453]; GO_process: GO:0048478 - replication fork protection [Evidence IMP] [PMID 16418273]; GO_process: GO:0048478 - replication fork protection [Evidence IMP] [PMID 18632578]; Tof1p complement(2553465..2554604) Sugiyamaella lignohabitans 30036667 AWJ20_4526 CDS MDE1 NC_031671.1 2554962 2555483 R 5'-methylthioribulose-1-phosphate dehydratase; acts in the methionine salvage pathway; potential Smt3p sumoylation substrate; expression downregulated by caspofungin and deletion mutant is caspofungin resistant; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0046570 - methylthioribulose 1-phosphate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0046570 - methylthioribulose 1-phosphate dehydratase activity [Evidence IMP] [PMID 18625006]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0019284 - L-methionine biosynthetic process from S-adenosylmethionine [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 18625006]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; methylthioribulose 1-phosphate dehydratase MDE1 complement(2554962..2555483) Sugiyamaella lignohabitans 30036668 AWJ20_4527 CDS MDE1 NC_031671.1 2555526 2555732 R 5'-methylthioribulose-1-phosphate dehydratase; acts in the methionine salvage pathway; potential Smt3p sumoylation substrate; expression downregulated by caspofungin and deletion mutant is caspofungin resistant; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0046570 - methylthioribulose 1-phosphate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0046570 - methylthioribulose 1-phosphate dehydratase activity [Evidence IMP] [PMID 18625006]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0019284 - L-methionine biosynthetic process from S-adenosylmethionine [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 18625006]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; methylthioribulose 1-phosphate dehydratase MDE1 complement(2555526..2555732) Sugiyamaella lignohabitans 30036669 AWJ20_4528 CDS BRE1 NC_031671.1 2556299 2558479 D E3 ubiquitin ligase; forms heterodimer with Rad6p to monoubiquinate histone H2B-K123, which is required for the subsequent methylation of histone H3-K4 and H3-K79; required for DSBR, transcription, silencing, and checkpoint control; interacts with RNA-binding protein Npl3p, linking histone ubiquitination to mRNA processing; Bre1p-dependent histone ubiquitination promotes pre-mRNA splicing; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12876294]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 23103252]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 19531475]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 12535539]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IGI] [PMID 16783014]; GO_process: GO:0010390 - histone monoubiquitination [Evidence IMP] [PMID 12535538]; GO_process: GO:0010390 - histone monoubiquitination [Evidence IMP] [PMID 12535539]; GO_process: GO:0016574 - histone ubiquitination [Evidence IMP] [PMID 23103252]; GO_process: GO:0031573 - intra-S DNA damage checkpoint [Evidence IMP] [PMID 15632126]; GO_process: GO:0042138 - meiotic DNA double-strand break formation [Evidence IMP] [PMID 15280549]; GO_process: GO:0031571 - mitotic G1 DNA damage checkpoint [Evidence IMP] [PMID 16166626]; GO_process: GO:0031571 - mitotic G1 DNA damage checkpoint [Evidence IMP] [PMID 16783014]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0030174 - regulation of DNA-dependent DNA replication initiation [Evidence IMP] [PMID 23103252]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IGI] [PMID 23390378]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IGI] [PMID 15632065]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IPI] [PMID 19531475]; E3 ubiquitin-protein ligase BRE1 2556299..2558479 Sugiyamaella lignohabitans 30036670 AWJ20_4529 CDS YMC1 NC_031671.1 2558736 2559620 R Putative mitochondrial inner membrane transporter; proposed role in oleate metabolism and glutamate biosynthesis; member of the mitochondrial carrier (MCF) family; localizes to vacuole in response to H2O2; YMC1 has a paralog, YMC2, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23509072]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16140254]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005342 - organic acid transmembrane transporter activity [Evidence IGI,ISS] [PMID 16140254]; GO_process: GO:0006839 - mitochondrial transport [Evidence IGI] [PMID 16140254]; GO_process: GO:0006810 - transport [Evidence IEA]; Ymc1p complement(2558736..2559620) Sugiyamaella lignohabitans 30036671 AWJ20_4530 CDS SLG1 NC_031671.1 2562350 2563387 D Sensor-transducer of the stress-activated PKC1-MPK1 kinase pathway; involved in maintenance of cell wall integrity; required for mitophagy; involved in organization of the actin cytoskeleton; secretory pathway Wsc1p is required for the arrest of secretion response; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 17761172]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9391108]; GO_function: GO:0004888 - transmembrane signaling receptor activity [Evidence IGI,ISS] [PMID 10430578]; GO_process: GO:0007266 - Rho protein signal transduction [Evidence IMP] [PMID 10348843]; GO_process: GO:0007266 - Rho protein signal transduction [Evidence IMP] [PMID 10508863]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 10508863]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 10508863]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 24326069]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 10348843]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20385774]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 14593073]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 24326069]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 10348843]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 10508863]; GO_process: GO:0006970 - response to osmotic stress [Evidence IGI] [PMID 14871941]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Slg1p 2562350..2563387 Sugiyamaella lignohabitans 30036673 AWJ20_4531 CDS CHO1 NC_031671.1 2564764 2565354 D Phosphatidylserine synthase; functions in phospholipid biosynthesis; catalyzes the reaction CDP-diaclyglycerol + L-serine = CMP + L-1-phosphatidylserine, transcriptionally repressed by myo-inositol and choline; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 2002005]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 6274497]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 3005242]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_function: GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity [Evidence IEA]; GO_function: GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity [Evidence IDA] [PMID 6088519]; GO_function: GO:0003882 - CDP-diacylglycerol-serine O-phosphatidyltransferase activity [Evidence IMP] [PMID 6988386]; GO_function: GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IEA]; GO_process: GO:0006659 - phosphatidylserine biosynthetic process [Evidence IDA] [PMID 6088519]; GO_process: GO:0006659 - phosphatidylserine biosynthetic process [Evidence IMP] [PMID 6988386]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; CDP-diacylglycerol-serine O-phosphatidyltransferase 2564764..2565354 Sugiyamaella lignohabitans 30036674 AWJ20_4532 CDS SLM1 NC_031671.1 2566956 2569379 D Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm2p; acts downstream of Mss4p in a pathway regulating actin cytoskeleton organization in response to stress; phosphorylated by the TORC2 complex; protein abundance increases in response to DNA replication stress; SLM1 has a paralog, SLM2, that arose from the whole genome duplication; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 15689497]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0032126 - eisosome [Evidence IDA] [PMID 21451250]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 19064668]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15372071]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15689497]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17101780]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IDA] [PMID 15689497]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IDA] [PMID 21119626]; GO_function: GO:0046625 - sphingolipid binding [Evidence IDA] [PMID 21119626]; GO_process: GO:0031929 - TOR signaling [Evidence IPI] [PMID 15689497]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 15372071]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IGI] [PMID 15689497]; GO_process: GO:0051017 - actin filament bundle assembly [Evidence IGI] [PMID 15689497]; GO_process: GO:0070941 - eisosome assembly [Evidence IGI] [PMID 21451250]; GO_process: GO:0016197 - endosomal transport [Evidence IGI] [PMID 21451250]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IPI] [PMID 15689497]; GO_process: GO:0001558 - regulation of cell growth [Evidence IGI,IPI] [PMID 15689497]; Slm1p 2566956..2569379 Sugiyamaella lignohabitans 30036675 AWJ20_4533 CDS ALG11 NC_031671.1 2569633 2571219 R Alpha-1,2-mannosyltransferase; catalyzes sequential addition of the two terminal alpha 1,2-mannose residues to the Man5GlcNAc2-PP-dolichol intermediate during asparagine-linked glycosylation in the ER; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 11278778]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004377 - GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity [Evidence IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IGI] [PMID 11278778]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IDA] [PMID 16878994]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006490 - oligosaccharide-lipid intermediate biosynthetic process [Evidence IDA] [PMID 16878994]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IGI] [PMID 11278778]; alpha-1,2-mannosyltransferase ALG11 complement(2569633..2571219) Sugiyamaella lignohabitans 30036676 AWJ20_4534 CDS MOB1 NC_031671.1 2572037 2572489 R Component of the mitotic exit network; associates with and is required for the activation and Cdc15p-dependent phosphorylation of the Dbf2p kinase; required for cytokinesis and cell separation; component of the CCR4 transcriptional complex; relocalizes from cytoplasm to the nuclear periphery upon DNA replication stress; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11434459]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 11434459]; GO_function: GO:0019207 - kinase regulator activity [Evidence IDA] [PMID 11404483]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 11404483]; GO_process: GO:0007096 - regulation of exit from mitosis [Evidence TAS] [PMID 11404483]; Mob1p complement(2572037..2572489) Sugiyamaella lignohabitans 30036677 AWJ20_4535 CDS FMP40 NC_031671.1 2574470 2576221 D hypothetical protein; proposed to be involved in responding to environmental stresses; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Fmp40p 2574470..2576221 Sugiyamaella lignohabitans 30036678 AWJ20_4536 CDS PIM1 NC_031671.1 2581042 2583876 D ATP-dependent Lon protease; involved in degradation of misfolded proteins in mitochondria; required for biogenesis and maintenance of mitochondria; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IMP] [PMID 8146662]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IMP] [PMID 8276800]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IBA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA,IEA]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IEA,IEA]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IMP] [PMID 8146662]; GO_function: GO:0004176 - ATP-dependent peptidase activity [Evidence IMP] [PMID 8276800]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0070361 - mitochondrial light strand promoter anti-sense binding [Evidence IBA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IBA]; GO_function: GO:0003727 - single-stranded RNA binding [Evidence IBA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA,IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IBA,IEA]; GO_process: GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]; GO_process: GO:0051131 - chaperone-mediated protein complex assembly [Evidence IGI] [PMID 8810243]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IEA,IEA]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 16336126]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IGI,IMP] [PMID 7957078]; GO_process: GO:0007005 - mitochondrion organization [Evidence IBA]; GO_process: GO:0070407 - oxidation-dependent protein catabolic process [Evidence IBA,IEA]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0051260 - protein homooligomerization [Evidence IBA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0090296 - regulation of mitochondrial DNA replication [Evidence IEA]; GO_process: GO:0001666 - response to hypoxia [Evidence IBA]; ATP-dependent Lon protease PIM1 2581042..2583876 Sugiyamaella lignohabitans 30036679 AWJ20_4537 CDS STE18 NC_031671.1 2585187 2585597 D G protein gamma subunit; forms a dimer with Ste4p to activate the mating signaling pathway, forms a heterotrimer with Gpa1p and Ste4p to dampen signaling; C-terminus is palmitoylated and farnesylated, which are required for normal signaling; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8995254]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IEA]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IMP] [PMID 2105453]; GO_component: GO:0005834 - heterotrimeric G-protein complex [Evidence IDA] [PMID 8995254]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 8995254]; GO_function: GO:0004871 - signal transducer activity [Evidence IEA,IEA]; GO_function: GO:0004871 - signal transducer activity [Evidence IMP] [PMID 2107073]; GO_process: GO:0007186 - G-protein coupled receptor signaling pathway [Evidence IEA]; GO_process: GO:0031684 - heterotrimeric G-protein complex cycle [Evidence IMP] [PMID 2107073]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 3151178]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Ste18p 2585187..2585597 Sugiyamaella lignohabitans 30036680 AWJ20_4538 CDS ASN2 NC_031671.1 2586053 2587744 R Asparagine synthetase; catalyzes the synthesis of L-asparagine from L-aspartate in the asparagine biosynthetic pathway; ASN2 has a paralog, ASN1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA,IEA]; GO_function: GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 6105958]; GO_function: GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence ISS] [PMID 8951815]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0070981 - L-asparagine biosynthetic process [Evidence IEA]; GO_process: GO:0006529 - asparagine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006529 - asparagine biosynthetic process [Evidence IGI] [PMID 8951815]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; asparagine synthase (glutamine-hydrolyzing) 2 complement(2586053..2587744) Sugiyamaella lignohabitans 30036681 AWJ20_4539 CDS AWJ20_4539 NC_031671.1 2588215 2589162 R uncharacterized protein complement(2588215..2589162) Sugiyamaella lignohabitans 30036682 AWJ20_4540 CDS AWJ20_4540 NC_031671.1 2591367 2592065 R uncharacterized protein complement(2591367..2592065) Sugiyamaella lignohabitans 30036684 AWJ20_4541 CDS HSP82 NC_031671.1 2595127 2597244 R Hsp90 chaperone; redundant in function with Hsc82p; required for pheromone signaling, negative regulation of Hsf1p; docks with Tom70p for mitochondrial preprotein delivery; promotes telomerase DNA binding, nucleotide addition; protein abundance increases in response to DNA replication stress; contains two acid-rich unstructured regions that promote solubility of chaperone-substrate complexes; HSP82 has a paralog, HSC82, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0042623 - ATPase activity, coupled [Evidence IDA] [PMID 12235160]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 10564510]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IDA] [PMID 10564510]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP] [PMID 9371781]; GO_process: GO:0000492 - box C/D snoRNP assembly [Evidence IMP] [PMID 18268103]; GO_process: GO:0032212 - positive regulation of telomere maintenance via telomerase [Evidence IDA,IMP,IPI] [PMID 17954556]; GO_process: GO:0043248 - proteasome assembly [Evidence IDA,IGI,IMP] [PMID 12853471]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0042026 - protein refolding [Evidence IMP] [PMID 9371781]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IPI] [PMID 12526792]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 16487343]; GO_process: GO:0006950 - response to stress [Evidence IEA,IEA]; Hsp90 family chaperone HSP82 complement(2595127..2597244) Sugiyamaella lignohabitans 30036685 AWJ20_4542 CDS AWJ20_4542 NC_031671.1 2597860 2599134 D putative proteoglycan 4 2597860..2599134 Sugiyamaella lignohabitans 30036686 AWJ20_4543 CDS RTP1 NC_031671.1 2597940 2602097 R Protein required for the nuclear import and biogenesis of RNA pol II; conflicting evidence on whether null mutant is viable with elongated buds, or inviable; interacts with Rpb2, Rpb3, Nup116p, Nup100p and components of the R2TP complex (Rvb1p, Rvb2p, Pih1p); similar to human TMCO7 gene; GO_component: GO:0005622 - intracellular [Evidence IDA] [PMID 23438601]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0044376 - RNA polymerase II complex localization to nucleus [Evidence IMP,IPI] [PMID 23438601]; Rtp1p complement(join(2597940..2598538,2599217..2602097)) Sugiyamaella lignohabitans 30036687 AWJ20_4544 CDS OLA1 NC_031671.1 2602332 2603560 R P-loop ATPase with similarity to human OLA1 and bacterial YchF; identified as specifically interacting with the proteasome; null mutant displays increased translation rate and increased readthrough of premature stop codons; protein abundance increases in response to hydrogen peroxide and to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 17430889]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0043023 - ribosomal large subunit binding [Evidence IEA]; GO_function: GO:0043022 - ribosome binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Ola1p complement(join(2602332..2603426,2603540..2603560)) Sugiyamaella lignohabitans 30036688 AWJ20_4545 CDS YPT6 NC_031671.1 2604471 2604992 R Rab family GTPase; Ras-like GTP binding protein involved in the secretory pathway, required for fusion of endosome-derived vesicles with the late Golgi, maturation of the vacuolar carboxypeptidase Y; resides temporarily at the Golgi, dissociates into cytosol upon arrival of the Rab GTPaseYpt32p, which also functions in the late Golgi; Golgi-localized form is bound to GTP, while cytosolic form is GDP-bound; homolog of the mammalian Rab6; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 24194547]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 24924636]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 24924636]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0003924 - GTPase activity [Evidence ISS] [PMID 9433126]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 10990452]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IMP] [PMID 11160819]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Rab family GTPase YPT6 complement(2604471..2604992) Sugiyamaella lignohabitans 30036689 AWJ20_4546 CDS AWJ20_4546 NC_031671.1 2608339 2609799 D uncharacterized protein 2608339..2609799 Sugiyamaella lignohabitans 30036690 AWJ20_4547 CDS TPS2 NC_031671.1 2611314 2614149 D Phosphatase subunit of the trehalose-6-P synthase/phosphatase complex; involved in synthesis of the storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway; protein abundance increases in response to DNA replication stress; GO_component: GO:0005946 - alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) [Evidence IGI,IMP,IPI] [PMID 9837904]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004805 - trehalose-phosphatase activity [Evidence IEA]; GO_function: GO:0004805 - trehalose-phosphatase activity [Evidence IMP] [PMID 8444170]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 8203161]; GO_process: GO:0034605 - cellular response to heat [Evidence IDA] [PMID 8444170]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IEA]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IMP] [PMID 8203161]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IMP] [PMID 8444170]; trehalose-phosphatase TPS2 join(2611314..2611508,2611630..2614149) Sugiyamaella lignohabitans 30036691 AWJ20_4548 CDS DAL81 NC_031671.1 2614347 2616632 R Positive regulator of genes in multiple nitrogen degradation pathways; contains DNA binding domain but does not appear to bind the dodecanucleotide sequence present in the promoter region of many genes involved in allantoin catabolism; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 20581295]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0001128 - RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IPI] [PMID 10906145]; GO_function: GO:0001190 - RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 17603098]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IDA,IMP] [PMID 21515579]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IPI] [PMID 10906145]; GO_process: GO:0001080 - nitrogen catabolite activation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7899074]; GO_process: GO:1901717 - positive regulation of gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:1901714 - positive regulation of urea catabolic process [Evidence IMP] [PMID 2406136]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; Dal81p complement(2614347..2616632) Sugiyamaella lignohabitans 30036692 AWJ20_4549 CDS RFC4 NC_031671.1 2617496 2618332 D Subunit of heteropentameric Replication factor C (RF-C); which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0031390 - Ctf18 RFC-like complex [Evidence IPI] [PMID 11389843]; GO_component: GO:0005663 - DNA replication factor C complex [Evidence IDA,ISS] [PMID 8063832]; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12909721]; GO_component: GO:0031391 - Elg1 RFC-like complex [Evidence IPI] [PMID 12912927]; GO_component: GO:0031389 - Rad17 RFC-like complex [Evidence IDA] [PMID 12604797]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 12604797]; GO_function: GO:0003689 - DNA clamp loader activity [Evidence IDA] [PMID 8995429]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006272 - leading strand elongation [Evidence IDA] [PMID 1346062]; GO_process: GO:0006298 - mismatch repair [Evidence TAS] [PMID 10072354]; GO_process: GO:0007062 - sister chromatid cohesion [Evidence IPI] [PMID 11389843]; replication factor C subunit 4 2617496..2618332 Sugiyamaella lignohabitans 30036693 AWJ20_4551 CDS LAG1 NC_031671.1 2622458 2623657 D Ceramide synthase component; involved in synthesis of ceramide from C26(acyl)-coenzyme A and dihydrosphingosine or phytosphingosine, functionally equivalent to Lac1p; forms ER foci upon DNA replication stress; homolog of human CERS2, a tumor metastasis suppressor gene whose silencing enahnces invasion/metastasis of prostate cancer cells; LAG1 has a paralog, LAC1, that arose from the whole genome duplication; GO_component: GO:0061576 - acyl-CoA ceramide synthase complex [Evidence IDA] [PMID 15692566]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 22842922]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IEA]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IMP] [PMID 11387200]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IMP] [PMID 11694577]; GO_function: GO:0050291 - sphingosine N-acyltransferase activity [Evidence IDA] [PMID 15692566]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046513 - ceramide biosynthetic process [Evidence IMP] [PMID 11694577]; GO_process: GO:0046513 - ceramide biosynthetic process [Evidence IDA] [PMID 15692566]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IEP,IMP] [PMID 8195187]; sphingosine N-acyltransferase LAG1 2622458..2623657 Sugiyamaella lignohabitans 30036696 AWJ20_4552 CDS SHO1 NC_031671.1 2623923 2624918 R osmosensor SHO1 complement(2623923..2624918) Sugiyamaella lignohabitans 30036697 AWJ20_4553 CDS AVT6 NC_031671.1 2627204 2628136 R Vacuolar aspartate and glutamate exporter; member of a family of seven genes (AVT1-7) related to vesicular GABA-glycine transporters; involved in compartmentalizing acidic amino acids in response to nitrogen starvation; AVT6 has a paralog, AVT5, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11274162]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20118605]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015183 - L-aspartate transmembrane transporter activity [Evidence IMP] [PMID 11274162]; GO_function: GO:0005313 - L-glutamate transmembrane transporter activity [Evidence IMP] [PMID 11274162]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11274162]; GO_process: GO:0032974 - amino acid transmembrane export from vacuole [Evidence IMP] [PMID 11274162]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 11274162]; GO_process: GO:0006810 - transport [Evidence IEA]; Avt6p complement(2627204..2628136) Sugiyamaella lignohabitans 30036698 AWJ20_4554 CDS NOP53 NC_031671.1 2628951 2630252 D Nucleolar protein; involved in biogenesis of the 60S subunit of the ribosome; interacts with rRNA processing factors Cbf5p and Nop2p and with the nucleolar proteins Nop17p and Nip7p; null mutant is viable but growth is severely impaired; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16043506]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16043506]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IDA] [PMID 16128814]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15686447]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 16128814]; GO_process: GO:0000055 - ribosomal large subunit export from nucleus [Evidence IMP] [PMID 16043506]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop53p 2628951..2630252 Sugiyamaella lignohabitans 30036699 AWJ20_4555 CDS AWJ20_4555 NC_031671.1 2630381 2631619 R uncharacterized protein complement(2630381..2631619) Sugiyamaella lignohabitans 30036700 AWJ20_4556 CDS PRP24 NC_031671.1 2632814 2635729 D Splicing factor that reanneals snRNPs during spliceosome recycling; reanneals U4 and U6 snRNPs; GO_component: GO:0005688 - U6 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IDA] [PMID 20181740]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0017069 - snRNA binding [Evidence IPI] [PMID 16410014]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IMP] [PMID 10022888]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IDA] [PMID 9452384]; Prp24p 2632814..2635729 Sugiyamaella lignohabitans 30036701 AWJ20_4557 CDS ECM29 NC_031671.1 2635789 2640549 R Scaffold protein; assists in association of the proteasome core particle with the regulatory particle; inhibits proteasomal ATPase activity; degraded by the mature proteasome after assembly; contains HEAT-like repeats; protein increases in abundance and relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 20620957]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IDA] [PMID 12408819]; GO_function: GO:0032947 - protein complex scaffold [Evidence IDA] [PMID 20620957]; GO_process: GO:0043248 - proteasome assembly [Evidence IDA] [PMID 20620957]; Ecm29p complement(2635789..2640549) Sugiyamaella lignohabitans 30036702 AWJ20_4558 CDS OCA5 NC_031671.1 2646532 2648226 D Cytoplasmic protein required for replication of Brome mosaic virus; S. cerevisiae is a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; Oca5p 2646532..2648226 Sugiyamaella lignohabitans 30036703 AWJ20_4559 CDS ANP1 NC_031671.1 2648741 2650222 R Subunit of the alpha-1,6 mannosyltransferase complex; type II membrane protein; has a role in retention of glycosyltransferases in the Golgi; involved in osmotic sensitivity and resistance to aminonitrophenyl propanediol; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000137 - Golgi cis cisterna [Evidence IDA] [PMID 9430634]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IPI] [PMID 9430634]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 9434768]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IDA,IMP] [PMID 9430634]; Anp1p complement(2648741..2650222) Sugiyamaella lignohabitans 30036704 AWJ20_4560 CDS PRP19 NC_031671.1 2652438 2653994 D Splicing factor associated with the spliceosome; contains a U-box, a motif found in a class of ubiquitin ligases, and a WD40 domain; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000974 - Prp19 complex [Evidence IDA] [PMID 8194532]; GO_component: GO:0071006 - U2-type catalytic step 1 spliceosome [Evidence IDA] [PMID 8248176]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_component: GO:0000151 - ubiquitin ligase complex [Evidence IEA]; GO_function: GO:0000384 - first spliceosomal transesterification activity [Evidence IC] [PMID 8248176]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA,IMP] [PMID 12627222]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000349 - generation of catalytic spliceosome for first transesterification step [Evidence IMP] [PMID 12970570]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; E3 ubiquitin-protein ligase PRP19 2652438..2653994 Sugiyamaella lignohabitans 30036706 AWJ20_4561 CDS AWJ20_4561 NC_031671.1 2654246 2657515 R uncharacterized protein complement(2654246..2657515) Sugiyamaella lignohabitans 30036707 AWJ20_4562 CDS AWJ20_4562 NC_031671.1 2662790 2664160 R uncharacterized protein complement(2662790..2664160) Sugiyamaella lignohabitans 30036708 AWJ20_4563 CDS AWJ20_4563 NC_031671.1 2664782 2666131 D uncharacterized protein 2664782..2666131 Sugiyamaella lignohabitans 30036709 AWJ20_4564 CDS MRPL22 NC_031671.1 2666532 2667500 D Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL22 2666532..2667500 Sugiyamaella lignohabitans 30036710 AWJ20_4565 CDS YMR1 NC_031671.1 2670416 2672110 D Phosphatidylinositol 3-phosphate (PI3P) phosphatase; involved in various protein sorting pathways, including CVT targeting and endosome to vacuole transport; has similarity to the conserved myotubularin dual specificity phosphatase family; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_function: GO:0016791 - phosphatase activity [Evidence IEA]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IEA]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IMP] [PMID 10900271]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IMP] [PMID 15169871]; GO_function: GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0035335 - peptidyl-tyrosine dephosphorylation [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 10900271]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IGI,IMP] [PMID 15169871]; phosphatidylinositol-3-phosphatase YMR1 2670416..2672110 Sugiyamaella lignohabitans 30036711 AWJ20_4566 CDS SHR3 NC_031671.1 2672443 2673036 R Endoplasmic reticulum packaging chaperone; required for incorporation of amino acid permeases into COPII coated vesicles for transport to the cell surface; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISS] [PMID 1423607]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 15623581]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP,IPI] [PMID 10564255]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 15623581]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 10564255]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 15623581]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Shr3p complement(2672443..2673036) Sugiyamaella lignohabitans 30036712 AWJ20_4567 CDS AWJ20_4567 NC_031671.1 2679164 2679835 R uncharacterized protein complement(2679164..2679835) Sugiyamaella lignohabitans 30036713 AWJ20_4568 CDS RPS3 NC_031671.1 2680153 2680914 R Protein component of the small (40S) ribosomal subunit; has apurinic/apyrimidinic (AP) endonuclease activity; essential for viability; homologous to mammalian ribosomal protein S3 and bacterial S3; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 3533916]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 385049]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 16738661]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IDA] [PMID 11561734]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 3533916]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 385049]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IMP] [PMID 16246728]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IGI] [PMID 22570489]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S3 complement(2680153..2680914) Sugiyamaella lignohabitans 30036714 AWJ20_4569 CDS PAB1 NC_031671.1 2681834 2683393 D Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15630021]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15769879]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15630021]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15769879]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 8631901]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA,IMP] [PMID 9193001]; GO_function: GO:0008428 - ribonuclease inhibitor activity [Evidence IDA] [PMID 11889048]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0060211 - regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IDA,IMP] [PMID 17766253]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA,IMP] [PMID 10357826]; GO_process: GO:0006810 - transport [Evidence IEA]; polyadenylate-binding protein 2681834..2683393 Sugiyamaella lignohabitans 30036715 AWJ20_4570 CDS ECM3 NC_031671.1 2683946 2685550 R Non-essential hypothetical protein; involved in signal transduction and the genotoxic response; induced rapidly in response to treatment with 8-methoxypsoralen and UVA irradiation; relocalizes from ER to cytoplasm upon DNA replication stress; ECM3 has a paralog, YNL095C, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 22842922]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 9200815]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; putative ATPase ECM3 complement(2683946..2685550) Sugiyamaella lignohabitans 30036717 AWJ20_4571 CDS APP1 NC_031671.1 2687167 2689527 D Phosphatidate phosphatase, converts phosphatidate to diacylglycerol; App1p, Pah1p, Dpp1p, and Lpp1p are responsible for all the phosphatidate phosphatase activity; component of cortical actin patches; interacts with components of endocytic pathway; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 11489916]; GO_component: GO:0015629 - actin cytoskeleton [Evidence IPI] [PMID 10992286]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008195 - phosphatidate phosphatase activity [Evidence IEA]; GO_function: GO:0008195 - phosphatidate phosphatase activity [Evidence IDA,IMP] [PMID 23071111]; GO_function: GO:0008195 - phosphatidate phosphatase activity [Evidence IDA] [PMID 23335564]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IPI] [PMID 10992286]; GO_process: GO:0044255 - cellular lipid metabolic process [Evidence IMP] [PMID 23071111]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; phosphatidate phosphatase APP1 2687167..2689527 Sugiyamaella lignohabitans 30036718 AWJ20_4572 CDS PET9 NC_031671.1 2692376 2693248 D Major ADP/ATP carrier of the mitochondrial inner membrane; exchanges cytosolic ADP for mitochondrially synthesized ATP; also imports heme and ATP; phosphorylated; required for viability in many lab strains that carry a sal1 mutation; PET9 has a paralog, AAC3, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 795470]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_function: GO:0005471 - ATP:ADP antiporter activity [Evidence IDA] [PMID 8476415]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015866 - ADP transport [Evidence IDA] [PMID 8476415]; GO_process: GO:0015867 - ATP transport [Evidence IDA] [PMID 8476415]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 2167309]; GO_process: GO:0009061 - anaerobic respiration [Evidence IGI] [PMID 1915842]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 17822411]; GO_process: GO:0015886 - heme transport [Evidence IMP,IPI] [PMID 18728780]; GO_process: GO:0006839 - mitochondrial transport [Evidence IMP] [PMID 2167309]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IDA] [PMID 8476415]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ADP/ATP carrier protein PET9 2692376..2693248 Sugiyamaella lignohabitans 30036719 AWJ20_4573 CDS AWJ20_4573 NC_031671.1 2694684 2697731 D uncharacterized protein 2694684..2697731 Sugiyamaella lignohabitans 30036720 AWJ20_4574 CDS YTA12 NC_031671.1 2698405 2700816 D Mitochondrial inner membrane m-AAA protease component; mediates degradation of misfolded or unassembled proteins; also required for correct assembly of mitochondrial enzyme complexes; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0005745 - m-AAA complex [Evidence IDA] [PMID 8681382]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0097002 - mitochondrial inner boundary membrane [Evidence IDA] [PMID 19019989]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 7929327]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 19748354]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 19748354]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 7929327]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IMP] [PMID 8681382]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 19748354]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 8681382]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence TAS] [PMID 12417197]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IMP] [PMID 8681382]; GO_process: GO:0006465 - signal peptide processing [Evidence IMP] [PMID 12417197]; m-AAA protease subunit YTA12 2698405..2700816 Sugiyamaella lignohabitans 30036721 AWJ20_4575 CDS AWJ20_4575 NC_031671.1 2699151 2699588 R uncharacterized protein complement(2699151..2699588) Sugiyamaella lignohabitans 30036722 AWJ20_4576 CDS NRG1 NC_031671.1 2701494 2703056 R similar to hypothetical protein; allele of CaO19.13270; putative zinc finger protein complement(2701494..2703056) Sugiyamaella lignohabitans 30036723 AWJ20_4577 CDS BIM1 NC_031671.1 2707094 2708059 D microtubule-binding protein BIM1 2707094..2708059 Sugiyamaella lignohabitans 30036724 AWJ20_4578 CDS RPS0A NC_031671.1 2708601 2709344 R Ribosomal 40S subunit protein S0A; required for maturation of 18S rRNA along with Rps0Bp; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal; homologous to human ribosomal protein SA and bacterial S2; RPS0A has a paralog, RPS0B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 8626693]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0015935 - small ribosomal subunit [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 8626693]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 8626693]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 9973221]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 14627813]; GO_process: GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 14627813]; GO_process: GO:0006407 - rRNA export from nucleus [Evidence IGI] [PMID 16246728]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IEA]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 8626693]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA,IEA]; ribosomal 40S subunit protein S0A complement(2708601..2709344) Sugiyamaella lignohabitans 30036725 AWJ20_4579 CDS RPS7A NC_031671.1 2714649 2715227 R Protein component of the small (40S) ribosomal subunit; interacts with Kti11p; deletion causes hypersensitivity to zymocin; homologous to mammalian ribosomal protein S7, no bacterial homolog; RPS7A has a paralog, RPS7B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IBA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0006364 - rRNA processing [Evidence IBA,IEA]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IBA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IGI] [PMID 16246728]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S7A complement(2714649..2715227) Sugiyamaella lignohabitans 30036726 AWJ20_4580 CDS GAS1 NC_031671.1 2715738 2717111 R Beta-1,3-glucanosyltransferase; required for cell wall assembly and also has a role in transcriptional silencing; localizes to cell surface via a glycosylphosphatidylinositol (GPI) anchor; also found at nuclear periphery; genetic interactions with histone H3 lysine acetyltransferases GCN5 and SAS3 indicate previously unsuspected functions for Gas1 in DNA damage response and cell cycle regulation; GO_component: GO:0030134 - ER to Golgi transport vesicle [Evidence IDA] [PMID 18462190]; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005621 - cellular bud scar [Evidence IDA] [PMID 19793924]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 19793924]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0045121 - membrane raft [Evidence IDA] [PMID 10716729]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0034399 - nuclear periphery [Evidence IDA] [PMID 19541632]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 1824714]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19793924]; GO_component: GO:0000936 - primary cell septum [Evidence IDA] [PMID 19793924]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 10809732]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 15355340]; GO_function: GO:0042124 - 1,3-beta-glucanosyltransferase activity [Evidence IDA] [PMID 17397106]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006342 - chromatin silencing [Evidence IMP,IPI] [PMID 19541632]; GO_process: GO:0030447 - filamentous growth [Evidence IMP] [PMID 15645503]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI] [PMID 16986442]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 9515908]; 1,3-beta-glucanosyltransferase GAS1 complement(2715738..2717111) Sugiyamaella lignohabitans 30036728 AWJ20_4581 CDS AWJ20_4581 NC_031671.1 2718433 2721131 R uncharacterized protein complement(join(2718433..2721009,2721084..2721131)) Sugiyamaella lignohabitans 30036729 AWJ20_4582 CDS AWJ20_4582 NC_031671.1 2721530 2723809 R uncharacterized protein complement(2721530..2723809) Sugiyamaella lignohabitans 30036730 AWJ20_4583 CDS AWJ20_4583 NC_031671.1 2724494 2726104 R glycoside hydrolase family 35 protein complement(2724494..2726104) Sugiyamaella lignohabitans 30036731 AWJ20_4584 CDS AWJ20_4584 NC_031671.1 2726526 2728148 D beta-galactosidase 2726526..2728148 Sugiyamaella lignohabitans 30036732 AWJ20_4585 CDS HXT15 NC_031671.1 2728533 2729387 R hexose transporter HXT15 complement(2728533..2729387) Sugiyamaella lignohabitans 30036733 AWJ20_4586 CDS STL1 NC_031671.1 2729426 2729995 R glucose-inactivated glycerol proton symporter STL1 complement(2729426..2729995) Sugiyamaella lignohabitans 30036734 AWJ20_4587 CDS AWJ20_4587 NC_031671.1 2731471 2732364 D uncharacterized protein 2731471..2732364 Sugiyamaella lignohabitans 30036735 AWJ20_4588 CDS OPT2 NC_031671.1 2736543 2739098 D Oligopeptide transporter; member of the OPT family, with potential orthologs in S. pombe and C. albicans; also plays a role in formation of mature vacuoles; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IC] [PMID 9643541]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA,ISS] [PMID 9643541]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IMP] [PMID 19767828]; Opt2p 2736543..2739098 Sugiyamaella lignohabitans 30036736 AWJ20_4589 CDS NEW1 NC_031671.1 2739449 2742892 D ATP binding cassette protein; cosediments with polysomes and is required for biogenesis of the small ribosomal subunit; Asn/Gln-rich rich region supports [NU+] prion formation and susceptibility to [PSI+] prion induction; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 19806183]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 23212245]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence ISS] [PMID 12110682]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 12110682]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence ISS] [PMID 12110682]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 19806183]; GO_process: GO:0006810 - transport [Evidence IEA]; New1p 2739449..2742892 Sugiyamaella lignohabitans 30036737 AWJ20_4590 CDS AWJ20_4590 NC_031671.1 2743022 2743840 R uncharacterized protein complement(2743022..2743840) Sugiyamaella lignohabitans 30036739 AWJ20_4591 CDS AWJ20_4591 NC_031671.1 2744634 2745035 D uncharacterized protein 2744634..2745035 Sugiyamaella lignohabitans 30036740 AWJ20_4592 CDS MMT2 NC_031671.1 2745304 2746527 R Putative metal transporter involved in mitochondrial iron accumulation; MMT2 has a paralog, MMT1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9353309]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 9353309]; GO_function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IGI,IMP] [PMID 9353309]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mmt2p complement(2745304..2746527) Sugiyamaella lignohabitans 30036741 AWJ20_4593 CDS AWJ20_4593 NC_031671.1 2747206 2749467 R uncharacterized protein complement(2747206..2749467) Sugiyamaella lignohabitans 30036742 AWJ20_4594 CDS ECM5 NC_031671.1 2749531 2752437 R Subunit of the Snt2C complex; physically associates with Snt2p and Rpd3p; along with Snt2p, recruits Rpd3p to a small number of promoters; also colocalizes with Snt2p, independently of Rpd3p, to promoters of stress response genes in response to oxidative stress; contains ATP/GTP-binding site motif A; null mutant exhibits increased cellular volume, large drooping buds with elongated necks; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0070211 - Snt2C complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 23878396]; Ecm5p complement(2749531..2752437) Sugiyamaella lignohabitans 30036743 AWJ20_4595 CDS DDR48 NC_031671.1 2753375 2754001 R DNA damage-responsive protein; expression is increased in response to heat-shock stress or treatments that produce DNA lesions; contains multiple repeats of the amino acid sequence NNNDSYGS; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 8444852]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 8444852]; GO_process: GO:0006281 - DNA repair [Evidence IDA,IMP] [PMID 2111448]; GO_process: GO:0006950 - response to stress [Evidence IEA]; DNA damage-responsive protein 48 complement(2753375..2754001) Sugiyamaella lignohabitans 30036744 AWJ20_4596 CDS PLB2 NC_031671.1 2757703 2759595 D Phospholipase B (lysophospholipase) involved in lipid metabolism; displays transacylase activity in vitro; overproduction confers resistance to lysophosphatidylcholine; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0005576 - extracellular region [Evidence IDA] [PMID 10497163]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10383953]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IEA]; GO_function: GO:0004622 - lysophospholipase activity [Evidence IDA,IMP,ISS] [PMID 10497163]; GO_function: GO:0004620 - phospholipase activity [Evidence IEA]; GO_process: GO:0006650 - glycerophospholipid metabolic process [Evidence IDA,IGI,IMP] [PMID 10497163]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; Plb2p 2757703..2759595 Sugiyamaella lignohabitans 30036745 AWJ20_4597 CDS MIM1 NC_031671.1 2759870 2760211 R Mitochondrial protein required for outer membrane protein import; cooperates with Tom70p to import the subset of proteins with multiple alpha-helical transmembrane segments, including Ugo1p, Tom20p, and others; present in a complex with Mim2p in the outer membrane that may create a local environment to facilitate membrane insertion of substrate proteins; also has a role in assembly of Tom20p into the TOM complex; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 15608614]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 15326197]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0070096 - mitochondrial outer membrane translocase complex assembly [Evidence IMP] [PMID 15608614]; GO_process: GO:0070096 - mitochondrial outer membrane translocase complex assembly [Evidence IMP] [PMID 17974559]; GO_process: GO:0045040 - protein import into mitochondrial outer membrane [Evidence IMP] [PMID 21825073]; GO_process: GO:0045040 - protein import into mitochondrial outer membrane [Evidence IMP] [PMID 21825074]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mim1p complement(2759870..2760211) Sugiyamaella lignohabitans 30036746 AWJ20_4598 CDS HAT2 NC_031671.1 2760635 2761792 D Subunit of the Hat1p-Hat2p histone acetyltransferase complex; required for high affinity binding of the complex to free histone H4, thereby enhancing Hat1p activity; similar to human RbAp46 and 48; has a role in telomeric silencing; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8858151]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9575221]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IPI] [PMID 14761951]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA,IPI] [PMID 8858151]; GO_component: GO:0000123 - histone acetyltransferase complex [Evidence IDA] [PMID 9575221]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14761951]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9575221]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IDA,IMP] [PMID 8858151]; GO_function: GO:0004402 - histone acetyltransferase activity [Evidence IMP] [PMID 9575221]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 8858151]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IDA] [PMID 8858151]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IGI] [PMID 10982821]; GO_process: GO:0016573 - histone acetylation [Evidence IDA,IMP] [PMID 8858151]; GO_process: GO:0016573 - histone acetylation [Evidence IMP] [PMID 9575221]; Hat2p 2760635..2761792 Sugiyamaella lignohabitans 30036747 AWJ20_4599 CDS LCB3 NC_031671.1 2762025 2763458 R Long-chain base-1-phosphate phosphatase; specific for dihydrosphingosine-1-phosphate, regulates ceramide and long-chain base phosphates levels, involved in incorporation of exogenous long chain bases in sphingolipids; LCB3 has a paralog, YSR3, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10477278]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042392 - sphingosine-1-phosphate phosphatase activity [Evidence TAS] [PMID 11278643]; GO_function: GO:0042392 - sphingosine-1-phosphate phosphatase activity [Evidence IDA] [PMID 9353337]; GO_process: GO:0019722 - calcium-mediated signaling [Evidence IMP] [PMID 11278643]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0030148 - sphingolipid biosynthetic process [Evidence TAS] [PMID 10563329]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; sphinganine kinase LCB3 complement(2762025..2763458) Sugiyamaella lignohabitans 30036748 AWJ20_4600 CDS RHO1 NC_031671.1 2764924 2765853 D GTP-binding protein of the rho subfamily of Ras-like proteins; involved in establishment of cell polarity; regulates protein kinase C (Pkc1p) and the cell wall synthesizing enzyme 1,3-beta-glucan synthase (Fks1p and Gsc2p); GO_component: GO:0000148 - 1,3-beta-D-glucan synthase complex [Evidence IDA] [PMID 8602515]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 1918143]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8195291]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 8195291]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 8195291]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12660244]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 15596542]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11591390]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 7962098]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 15596542]; GO_process: GO:0031532 - actin cytoskeleton reorganization [Evidence IGI,IPI] [PMID 8947028]; GO_process: GO:0007117 - budding cell bud growth [Evidence IGI,IMP] [PMID 8195291]; GO_process: GO:0045807 - positive regulation of endocytosis [Evidence IMP] [PMID 14593073]; GO_process: GO:0090037 - positive regulation of protein kinase C signaling [Evidence IDA,IMP] [PMID 8621575]; GO_process: GO:0090037 - positive regulation of protein kinase C signaling [Evidence IGI,IPI] [PMID 8846785]; GO_process: GO:0008361 - regulation of cell size [Evidence IMP] [PMID 17302939]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IMP] [PMID 8602514]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IDA,IMP] [PMID 8602515]; GO_process: GO:0090334 - regulation of cell wall (1->3)-beta-D-glucan biosynthetic process [Evidence IDA,IMP] [PMID 8662910]; GO_process: GO:0060178 - regulation of exocyst localization [Evidence IMP] [PMID 11283608]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IMP] [PMID 8621575]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 10893184]; GO_process: GO:0032889 - regulation of vacuole fusion, non-autophagic [Evidence IMP] [PMID 11598008]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IDA] [PMID 8621575]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IGI] [PMID 8846785]; Rho family GTPase RHO1 2764924..2765853 Sugiyamaella lignohabitans 30036751 AWJ20_4601 CDS AWJ20_4601 NC_031671.1 2766832 2767485 D uncharacterized protein 2766832..2767485 Sugiyamaella lignohabitans 30036752 AWJ20_4602 CDS HFD1 NC_031671.1 2768436 2770007 D Hexadecenal dehydrogenase; involved in the conversion of sphingosine 1-phosphate breakdown product hexadecenal to hexadecenoic acid; located in the mitochondrial outer membrane and also in lipid particles; has similarity to ALDH3A2, a human fatty aldehyde dehydrogenase (FALDH) mutated in Sjogren-Larsson syndrome, a neurocutaneous disorder; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 14562095]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16689936]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004028 - 3-chloroallyl aldehyde dehydrogenase activity [Evidence ISS] [PMID 16407407]; GO_function: GO:0004029 - aldehyde dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004030 - aldehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO_function: GO:0047770 - carboxylate reductase activity [Evidence IMP] [PMID 22633490]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006081 - cellular aldehyde metabolic process [Evidence IEA]; GO_process: GO:0006081 - cellular aldehyde metabolic process [Evidence IC] [PMID 16407407]; GO_process: GO:0006081 - cellular aldehyde metabolic process [Evidence IMP] [PMID 22633490]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Hfd1p 2768436..2770007 Sugiyamaella lignohabitans 30036753 AWJ20_4603 CDS PRP31 NC_031671.1 2770180 2771883 D Splicing factor; component of the U4/U6-U5 snRNP complex; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IEA]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; GO_process: GO:0000387 - spliceosomal snRNP assembly [Evidence IDA,IMP] [PMID 9199293]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IEA]; Prp31p 2770180..2771883 Sugiyamaella lignohabitans 30036754 AWJ20_4605 CDS AWJ20_4605 NC_031673.1 9063 9809 R uncharacterized protein complement(9063..9809) Sugiyamaella lignohabitans 30036756 AWJ20_4606 CDS POL92 NC_031673.1 10902 14051 R allele of CaO19.8194; polyprotein of L1-like non-LTR retrotransposon Zorro 3 complement(10902..14051) Sugiyamaella lignohabitans 30036757 AWJ20_4608 CDS STR2 NC_031673.1 16659 18428 D Cystathionine gamma-synthase, converts cysteine into cystathionine; STR2 has a paralog, YML082W, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0003962 - cystathionine gamma-synthase activity [Evidence IEA]; GO_function: GO:0003962 - cystathionine gamma-synthase activity [Evidence IMP] [PMID 10821189]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence IMP] [PMID 10821189]; GO_process: GO:0019346 - transsulfuration [Evidence IMP] [PMID 10821189]; Str2p 16659..18428 Sugiyamaella lignohabitans 30036759 AWJ20_4609 CDS AWJ20_4609 NC_031673.1 20297 20980 R uncharacterized protein complement(20297..20980) Sugiyamaella lignohabitans 30036760 AWJ20_4610 CDS DAL2 NC_031673.1 22086 23129 D Allantoicase; converts allantoate to urea and ureidoglycolate in the second step of allantoin degradation; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004037 - allantoicase activity [Evidence IEA,IEA]; GO_function: GO:0004037 - allantoicase activity [Evidence ISS] [PMID 1916277]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0000256 - allantoin catabolic process [Evidence IEA,IEA]; GO_process: GO:0000256 - allantoin catabolic process [Evidence IMP] [PMID 1916277]; GO_process: GO:0006144 - purine nucleobase metabolic process [Evidence IEA]; allantoicase 22086..23129 Sugiyamaella lignohabitans 30036762 AWJ20_4611 CDS MNS1 NC_031673.1 25250 27241 R Alpha-1,2-mannosidase; involved in ER-associated protein degradation (ERAD); catalyzes the removal of one mannose residue from a glycosylated protein, converting the modification from Man9GlcNAc to Man8GlcNAc; catalyzes the last step in glycoprotein maturation in the ER and is critical for ER protein degradation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 8864657]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IEA,IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IDA] [PMID 12090241]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IMP] [PMID 1714453]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IMP] [PMID 8439291]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IDA] [PMID 8910350]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 8905927]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0035977 - protein deglycosylation involved in glycoprotein catabolic process [Evidence IMP] [PMID 9732283]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; mannosyl-oligosaccharide 1,2-alpha-mannosidase complement(25250..27241) Sugiyamaella lignohabitans 30036763 AWJ20_4612 CDS AWJ20_4612 NC_031673.1 28542 29183 R peptidase family M20 protein complement(28542..29183) Sugiyamaella lignohabitans 30036764 AWJ20_4613 CDS AWJ20_4613 NC_031673.1 30080 30913 D uncharacterized protein 30080..30913 Sugiyamaella lignohabitans 30036765 AWJ20_4614 CDS POL4 NC_031673.1 32007 33749 D DNA polymerase IV; undergoes pair-wise interactions with Dnl4p-Lif1p and Rad27p to mediate repair of DNA double-strand breaks by non-homologous end joining (NHEJ); homologous to mammalian DNA polymerase beta; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence TAS] [PMID 9745046]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence TAS] [PMID 9745046]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA,IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IDA] [PMID 12235149]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA,IMP] [PMID 10438542]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IDA] [PMID 15342630]; Pol4p 32007..33749 Sugiyamaella lignohabitans 30036766 AWJ20_4615 CDS SCS2 NC_031673.1 37366 38799 D phosphatidylinositol-binding protein SCS2 join(37366..37399,37772..38799) Sugiyamaella lignohabitans 30036767 AWJ20_4616 CDS MAP2 NC_031673.1 39107 40453 R Methionine aminopeptidase; catalyzes the cotranslational removal of N-terminal methionine from nascent polypeptides; function is partially redundant with that of Map1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IEA]; GO_function: GO:0070006 - metalloaminopeptidase activity [Evidence IGI,ISA] [PMID 8618900]; GO_function: GO:0008235 - metalloexopeptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0070084 - protein initiator methionine removal [Evidence IEA]; GO_process: GO:0035551 - protein initiator methionine removal involved in protein maturation [Evidence IMP] [PMID 11811952]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Map2p complement(39107..40453) Sugiyamaella lignohabitans 30036768 AWJ20_4617 CDS MAL31 NC_031673.1 41803 43146 R Maltose permease; high-affinity maltose transporter (alpha-glucoside transporter); encoded in the MAL3 complex locus; member of the 12 transmembrane domain superfamily of sugar transporters; functional in genomic reference strain S288C; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0005352 - alpha-glucoside:proton symporter activity [Evidence ISS] [PMID 18179544]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0000017 - alpha-glucoside transport [Evidence ISS] [PMID 18179544]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0000023 - maltose metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Mal31p complement(41803..43146) Sugiyamaella lignohabitans 30036769 AWJ20_4618 CDS DES1 NC_031673.1 44455 45597 D sphingolipid delta-4 desaturase 44455..45597 Sugiyamaella lignohabitans 30036770 AWJ20_4619 CDS AWJ20_4619 NC_031673.1 48199 49290 D cyclin Pch1 48199..49290 Sugiyamaella lignohabitans 30036771 AWJ20_4620 CDS RAD9 NC_031673.1 50474 53815 D chromatin-binding protein RAD9 50474..53815 Sugiyamaella lignohabitans 30036773 AWJ20_4621 CDS TDA9 NC_031673.1 58577 62152 D Transcription factor that regulates acetate production; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; null mutant is sensitive to expression of the top1-T722A allele; not an essential gene; TDA9 has a paralog, RSF2, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 16785442]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA,IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0019413 - acetate biosynthetic process [Evidence IMP] [PMID 23240040]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Tda9p 58577..62152 Sugiyamaella lignohabitans 30036774 AWJ20_4622 CDS AWJ20_4622 NC_031673.1 62322 66023 R uncharacterized protein complement(62322..66023) Sugiyamaella lignohabitans 30036775 AWJ20_4623 CDS AWJ20_4623 NC_031673.1 66204 66434 R uncharacterized protein complement(66204..66434) Sugiyamaella lignohabitans 30036776 AWJ20_4624 CDS AWJ20_4624 NC_031673.1 69670 71322 D uncharacterized protein 69670..71322 Sugiyamaella lignohabitans 30036777 AWJ20_4625 CDS PGK1 NC_031673.1 73083 74557 D 3-phosphoglycerate kinase; catalyzes transfer of high-energy phosphoryl groups from the acyl phosphate of 1,3-bisphosphoglycerate to ADP to produce ATP; key enzyme in glycolysis and gluconeogenesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16962558]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004618 - phosphoglycerate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004618 - phosphoglycerate kinase activity [Evidence IDA] [PMID 6254992]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006094 - gluconeogenesis [Evidence IMP] [PMID 400791]; GO_process: GO:0006096 - glycolytic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006096 - glycolytic process [Evidence IMP] [PMID 400791]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; phosphoglycerate kinase join(73083..73152,73371..74557) Sugiyamaella lignohabitans 30036778 AWJ20_4626 CDS GYP5 NC_031673.1 76568 79138 D GTPase-activating protein (GAP) for yeast Rab family members; involved in ER to Golgi trafficking; exhibits GAP activity toward Ypt1p that is stimulated by Gyl1p, also acts on Sec4p; interacts with Gyl1p, Rvs161p and Rvs167p; involved in recruiting Rvs167p to the bud tip during polarized growth; relocalizes from bud neck to cytoplasm upon DNA replication stress; GYP5 has a paralog, GYL1, that arose from the whole genome duplication; GO_component: GO:0005798 - Golgi-associated vesicle [Evidence IDA] [PMID 15331637]; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15331637]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 15331637]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12189143]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15331637]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15331637]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IGI,IPI,ISS] [PMID 12189143]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IGI,IPI] [PMID 15802519]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 15802519]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 12189143]; Gyp5p 76568..79138 Sugiyamaella lignohabitans 30036779 AWJ20_4627 CDS VPS29 NC_031673.1 80554 81120 D Subunit of the membrane-associated retromer complex; endosomal protein; essential for endosome-to-Golgi retrograde transport; forms a subcomplex with Vps35p and Vps26p that selects cargo proteins for endosome-to-Golgi retrieval; GO_component: GO:0005768 - endosome [Evidence IPI] [PMID 9700157]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IPI] [PMID 9700157]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps29p 80554..81120 Sugiyamaella lignohabitans 30036780 AWJ20_4628 CDS SHM2 NC_031673.1 82014 83429 R Cytosolic serine hydroxymethyltransferase; converts serine to glycine plus 5,10 methylenetetrahydrofolate; major isoform involved in generating precursors for purine, pyrimidine, amino acid, and lipid biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12700234]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 8132653]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IMP] [PMID 8132653]; GO_function: GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IMP] [PMID 9398220]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006563 - L-serine metabolic process [Evidence IEA]; GO_process: GO:0006544 - glycine metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IEA]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IMP] [PMID 8132653]; GO_process: GO:0006730 - one-carbon metabolic process [Evidence IGI,IMP] [PMID 9398220]; GO_process: GO:0035999 - tetrahydrofolate interconversion [Evidence IEA]; glycine hydroxymethyltransferase SHM2 complement(82014..83429) Sugiyamaella lignohabitans 30036781 AWJ20_4629 CDS AWJ20_4629 NC_031673.1 84309 85184 R uncharacterized protein complement(84309..85184) Sugiyamaella lignohabitans 30036782 AWJ20_4630 CDS AWJ20_4630 NC_031673.1 88864 91776 D uncharacterized protein 88864..91776 Sugiyamaella lignohabitans 30036784 AWJ20_4631 CDS STI1 NC_031673.1 92091 93134 D Hsp90 cochaperone; interacts with the Ssa group of the cytosolic Hsp70 chaperones and activates Ssa1p ATPase activity; interacts with Hsp90 chaperones and inhibits their ATPase activity; homolog of mammalian Hop; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IPI] [PMID 12525481]; GO_function: GO:0042030 - ATPase inhibitor activity [Evidence IDA] [PMID 21170051]; GO_function: GO:0030544 - Hsp70 protein binding [Evidence IDA] [PMID 12716905]; GO_function: GO:0051879 - Hsp90 protein binding [Evidence IDA] [PMID 12525481]; GO_function: GO:0051879 - Hsp90 protein binding [Evidence IDA] [PMID 9927435]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21124907]; GO_process: GO:0006457 - protein folding [Evidence IGI,IMP] [PMID 8972212]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp90 cochaperone STI1 92091..93134 Sugiyamaella lignohabitans 30036785 AWJ20_4632 CDS YIH1 NC_031673.1 93618 94421 D Negative regulator of eIF2 kinase Gcn2p; competes with Gcn2p for binding to Gcn1p; may contribute to regulation of translation in response to starvation via regulation of Gcn2p; binds to monomeric actin and to ribosomes and polyribosomes; ortholog of mammalian IMPACT; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 22404850]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 22404850]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0003785 - actin monomer binding [Evidence IDA] [PMID 15126500]; GO_function: GO:0004860 - protein kinase inhibitor activity [Evidence IMP] [PMID 15126500]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 22404850]; GO_process: GO:0001933 - negative regulation of protein phosphorylation [Evidence IMP] [PMID 15126500]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; Yih1p 93618..94421 Sugiyamaella lignohabitans 30036786 AWJ20_4633 CDS PWP2 NC_031673.1 95708 98530 D Conserved 90S pre-ribosomal component; essential for proper endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites; contains eight WD-repeats; PWP2 deletion leads to defects in cell cycle and bud morphogenesis; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8804409]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0007109 - cytokinesis, completion of separation [Evidence IMP] [PMID 8804409]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15231838]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15231838]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15231838]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8804409]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Pwp2p 95708..98530 Sugiyamaella lignohabitans 30036787 AWJ20_4634 CDS CTR86 NC_031673.1 99978 101096 D Essential hypothetical protein; with orthologs in Ashbya gossypii and Candida albicans; similar to human ATXN10, mutations in which cause spinocerebellar ataxia type 10; codon usage corresponds to that observed for yeast genes expressed at low levels; relative distribution to the nucleus increases upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009088 - threonine biosynthetic process [Evidence IEA]; Ctr86p 99978..101096 Sugiyamaella lignohabitans 30036788 AWJ20_4635 CDS AWJ20_4635 NC_031673.1 101252 103252 R uncharacterized protein complement(101252..103252) Sugiyamaella lignohabitans 30036789 AWJ20_4636 CDS AWJ20_4636 NC_031673.1 104652 106517 R uncharacterized protein complement(104652..106517) Sugiyamaella lignohabitans 30036790 AWJ20_4637 CDS PRO2 NC_031673.1 108419 109786 D Gamma-glutamyl phosphate reductase; catalyzes the second step in proline biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IDA] [PMID 12513997]; GO_function: GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IGI] [PMID 2824433]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0055129 - L-proline biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006561 - proline biosynthetic process [Evidence TAS] [PMID 11084050]; GO_process: GO:0006561 - proline biosynthetic process [Evidence IDA] [PMID 12513997]; glutamate-5-semialdehyde dehydrogenase 108419..109786 Sugiyamaella lignohabitans 30036791 AWJ20_4638 CDS DRS2 NC_031673.1 109973 112303 R Trans-golgi network aminophospholipid translocase (flippase); maintains membrane lipid asymmetry in post-Golgi secretory vesicles; contributes to clathrin-coated vesicle formation and endocytosis; subject to auto-inhibition by its C-terminal tail; mutations in human homolog ATP8B1 result in liver disease; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 10601336]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 12221123]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 15090616]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI] [PMID 15090616]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IMP] [PMID 15249668]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 16452632]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IMP] [PMID 8633245]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 24272750]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 12631737]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 16195350]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 15249668]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 16452632]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 10601336]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 8247005]; aminophospholipid-translocating P4-type ATPase DRS2 complement(109973..112303) Sugiyamaella lignohabitans 30036792 AWJ20_4639 CDS DRS2 NC_031673.1 112477 114270 R Trans-golgi network aminophospholipid translocase (flippase); maintains membrane lipid asymmetry in post-Golgi secretory vesicles; contributes to clathrin-coated vesicle formation and endocytosis; subject to auto-inhibition by its C-terminal tail; mutations in human homolog ATP8B1 result in liver disease; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 10601336]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 12221123]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 15090616]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA,IEA]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI] [PMID 15090616]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IMP] [PMID 15249668]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IGI,IMP] [PMID 16452632]; GO_function: GO:0004012 - phospholipid-translocating ATPase activity [Evidence IMP] [PMID 8633245]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0032456 - endocytic recycling [Evidence IMP] [PMID 24272750]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 12631737]; GO_process: GO:0006897 - endocytosis [Evidence IGI] [PMID 16195350]; GO_process: GO:0006886 - intracellular protein transport [Evidence IGI] [PMID 12221123]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 15249668]; GO_process: GO:0045332 - phospholipid translocation [Evidence IMP] [PMID 16452632]; GO_process: GO:0015914 - phospholipid transport [Evidence IEA]; GO_process: GO:0006892 - post-Golgi vesicle-mediated transport [Evidence IGI,IMP] [PMID 10601336]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 8247005]; aminophospholipid-translocating P4-type ATPase DRS2 complement(112477..114270) Sugiyamaella lignohabitans 30036793 AWJ20_4640 CDS MNN10 NC_031673.1 121028 122083 D Subunit of a Golgi mannosyltransferase complex; complex mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family; other members of the complex are Anp1p, Mnn9p, Mnn11p, and Hoc1p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 10037752]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 16034811]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 10037752]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 8991513]; Mnn10p 121028..122083 Sugiyamaella lignohabitans 30036795 AWJ20_4641 CDS ENV9 NC_031673.1 123523 124443 R Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p complement(123523..124443) Sugiyamaella lignohabitans 30036796 AWJ20_4642 CDS SWI1 NC_031673.1 126168 130211 D Subunit of the SWI/SNF chromatin remodeling complex; regulates transcription by remodeling chromatin; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2; can form the prion [SWI+]; human homolog ARID1A is a candidate tumor suppressor gene in breast cancer; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 18644858]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8016655]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA] [PMID 8127913]; GO_component: GO:0016514 - SWI/SNF complex [Evidence IDA,IMP] [PMID 8159677]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 3143101]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IPI] [PMID 11865042]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IMP,IPI] [PMID 14580348]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 8016655]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 10198436]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 14580348]; GO_process: GO:0044109 - cellular alcohol catabolic process [Evidence IMP] [PMID 1339306]; GO_process: GO:0031496 - positive regulation of mating type switching [Evidence IMP] [PMID 6436497]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 1339306]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 3542227]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 8016655]; GO_process: GO:0061412 - positive regulation of transcription from RNA polymerase II promoter in response to amino acid starvation [Evidence IMP] [PMID 10549298]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0005987 - sucrose catabolic process [Evidence IMP] [PMID 1339306]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Swi1p 126168..130211 Sugiyamaella lignohabitans 30036797 AWJ20_4643 CDS RAD1 NC_031673.1 130280 133468 R ssDNA endodeoxyribonuclease RAD1 complement(130280..133468) Sugiyamaella lignohabitans 30036798 AWJ20_4644 CDS PEX29 NC_031673.1 134318 136012 D Peroxisomal integral membrane peroxin; involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p; forms ER foci upon DNA replication stress; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 12707309]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007031 - peroxisome organization [Evidence IEA]; GO_process: GO:0007031 - peroxisome organization [Evidence IDA,IGI,IMP] [PMID 12707309]; Pex29p 134318..136012 Sugiyamaella lignohabitans 30036799 AWJ20_4645 CDS ADE6 NC_031673.1 136122 140093 R Formylglycinamidine-ribonucleotide (FGAM)-synthetase; catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004642 - phosphoribosylformylglycinamidine synthase activity [Evidence IEA,IEA]; GO_function: GO:0004642 - phosphoribosylformylglycinamidine synthase activity [Evidence IMP] [PMID 9331966]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IC] [PMID 9331966]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0006164 - purine nucleotide biosynthetic process [Evidence IMP] [PMID 1743513]; phosphoribosylformylglycinamidine synthase complement(136122..140093) Sugiyamaella lignohabitans 30036800 AWJ20_4646 CDS AWJ20_4646 NC_031673.1 140749 141036 D uncharacterized protein 140749..141036 Sugiyamaella lignohabitans 30036801 AWJ20_4647 CDS TWF1 NC_031673.1 142946 143905 D Twinfilin; highly conserved actin monomer-sequestering protein involved in regulation of the cortical actin cytoskeleton; coordinates actin filament severing and monomer sequestering at sites of rapid actin turnover; composed of two cofilin-like regions, localizes actin monomers to sites of rapid filament assembly; GO_component: GO:0030479 - actin cortical patch [Evidence TAS] [PMID 10652251]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 16569665]; GO_function: GO:0003785 - actin monomer binding [Evidence IDA] [PMID 9700161]; GO_process: GO:0044396 - actin cortical patch organization [Evidence IMP] [PMID 16569665]; GO_process: GO:0030042 - actin filament depolymerization [Evidence IDA] [PMID 16569665]; GO_process: GO:0007015 - actin filament organization [Evidence IDA,IMP] [PMID 16569665]; GO_process: GO:0051014 - actin filament severing [Evidence IDA,IMP] [PMID 16569665]; GO_process: GO:0030837 - negative regulation of actin filament polymerization [Evidence IEA]; GO_process: GO:0042989 - sequestering of actin monomers [Evidence IDA] [PMID 9700161]; Twf1p 142946..143905 Sugiyamaella lignohabitans 30036802 AWJ20_4648 CDS SFC1 NC_031673.1 144144 144980 R Mitochondrial succinate-fumarate transporter; transports succinate into and fumarate out of the mitochondrion; required for ethanol and acetate utilization; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence ISS] [PMID 7908717]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005469 - succinate:fumarate antiporter activity [Evidence IDA] [PMID 9395087]; GO_process: GO:0015741 - fumarate transport [Evidence IDA] [PMID 9395087]; GO_process: GO:0015744 - succinate transport [Evidence IDA] [PMID 9395087]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Sfc1p complement(144144..144980) Sugiyamaella lignohabitans 30036803 AWJ20_4649 CDS RSC9 NC_031673.1 150734 152857 D Component of the RSC chromatin remodeling complex; DNA-binding protein involved in the synthesis of rRNA and in transcriptional repression and activation of genes regulated by the Target of Rapamycin (TOR) pathway; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 10619019]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 11931764]; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12183366]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 12183366]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_function: GO:0003682 - chromatin binding [Evidence IPI] [PMID 11931764]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA,IDA] [PMID 12183366]; GO_process: GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 17542652]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IDA] [PMID 11931764]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IPI] [PMID 11931764]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0009303 - rRNA transcription [Evidence IMP] [PMID 11931764]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11931764]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; GO_process: GO:0061587 - transfer RNA gene-mediated silencing [Evidence IMP] [PMID 23707796]; Rsc9p 150734..152857 Sugiyamaella lignohabitans 30036804 AWJ20_4650 CDS AWJ20_4650 NC_031673.1 155378 155926 D uncharacterized protein 155378..155926 Sugiyamaella lignohabitans 30036806 AWJ20_4651 CDS AWJ20_4651 NC_031673.1 158555 159265 R uncharacterized protein complement(158555..159265) Sugiyamaella lignohabitans 30036807 AWJ20_4652 CDS AWJ20_4652 NC_031673.1 160555 162177 D uncharacterized protein 160555..162177 Sugiyamaella lignohabitans 30036808 AWJ20_4653 CDS RCF1 NC_031673.1 162426 162887 R Cytochrome c oxidase subunit; required for assembly of the Complex III-Complex IV supercomplex, and for assembly of Cox13p and Rcf2p into cytochrome c oxidase; similar to Rcf2p, and either Rcf1p or Rcf2p is required for late-stage assembly of the Cox12p and Cox13p subunits and for cytochrome c oxidase activity; required for growth under hypoxic conditions; member of the hypoxia induced gene family; C. elegans and human orthologs are functional in yeast; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 22310663]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 22342701]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 22405070]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22310663]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22342701]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22405070]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IGI] [PMID 22310663]; GO_process: GO:0097250 - mitochondrial respiratory chain supercomplex assembly [Evidence IMP] [PMID 22342701]; GO_process: GO:0097250 - mitochondrial respiratory chain supercomplex assembly [Evidence IMP] [PMID 22405070]; Rcf1p complement(162426..162887) Sugiyamaella lignohabitans 30036809 AWJ20_4654 CDS GUK1 NC_031673.1 163421 163678 R Guanylate kinase; converts GMP to GDP; required for growth and mannose outer chain elongation of cell wall N-linked glycoproteins; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004385 - guanylate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004385 - guanylate kinase activity [Evidence IDA] [PMID 1334480]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046037 - GMP metabolic process [Evidence TAS] [PMID 11035032]; GO_process: GO:0046939 - nucleotide phosphorylation [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006163 - purine nucleotide metabolic process [Evidence IEA]; guanylate kinase complement(163421..163678) Sugiyamaella lignohabitans 30036810 AWJ20_4655 CDS AWJ20_4655 NC_031673.1 164583 165614 D uncharacterized protein 164583..165614 Sugiyamaella lignohabitans 30036811 AWJ20_4656 CDS CSR1 NC_031673.1 168708 170060 D Phosphatidylinositol transfer protein; has a potential role in regulating lipid and fatty acid metabolism under heme-depleted conditions; interacts specifically with thioredoxin peroxidase; may have a role in oxidative stress resistance; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12869188]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 10848624]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12869188]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 17803462]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA] [PMID 10848624]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IGI] [PMID 10848624]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI] [PMID 16126894]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0045717 - negative regulation of fatty acid biosynthetic process [Evidence IDA,IGI,IMP] [PMID 17803462]; GO_process: GO:1901352 - negative regulation of phosphatidylglycerol biosynthetic process [Evidence IGI] [PMID 12869188]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IGI] [PMID 16262726]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 10848624]; GO_process: GO:2001247 - positive regulation of phosphatidylcholine biosynthetic process [Evidence IGI] [PMID 12869188]; GO_process: GO:0006810 - transport [Evidence IEA]; Csr1p 168708..170060 Sugiyamaella lignohabitans 30036812 AWJ20_4657 CDS AWJ20_4657 NC_031673.1 172055 172846 D uncharacterized protein 172055..172846 Sugiyamaella lignohabitans 30036813 AWJ20_4658 CDS MCH5 NC_031673.1 174040 174744 D Plasma membrane riboflavin transporter; facilitates the uptake of vitamin B2; required for FAD-dependent processes; sequence similarity to mammalian monocarboxylate permeases, however mutants are not deficient in monocarboxylate transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16204239]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0032217 - riboflavin transporter activity [Evidence IGI] [PMID 16204239]; GO_process: GO:0032218 - riboflavin transport [Evidence IGI] [PMID 16204239]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mch5p 174040..174744 Sugiyamaella lignohabitans 30036814 AWJ20_4659 CDS MCH5 NC_031673.1 174814 175548 D Plasma membrane riboflavin transporter; facilitates the uptake of vitamin B2; required for FAD-dependent processes; sequence similarity to mammalian monocarboxylate permeases, however mutants are not deficient in monocarboxylate transport; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16204239]; GO_function: GO:0008028 - monocarboxylic acid transmembrane transporter activity [Evidence IGI,IMP] [PMID 11536335]; GO_function: GO:0032217 - riboflavin transporter activity [Evidence IGI] [PMID 16204239]; GO_process: GO:0032218 - riboflavin transport [Evidence IGI] [PMID 16204239]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Mch5p 174814..175548 Sugiyamaella lignohabitans 30036815 AWJ20_4660 CDS PMU1 NC_031673.1 177061 177663 R Putative phosphomutase; contains a region homologous to the active site of phosphomutases; overexpression suppresses the histidine auxotrophy of an ade3 ade16 ade17 triple mutant and the temperature sensitivity of a tps2 mutant; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Pmu1p complement(177061..177663) Sugiyamaella lignohabitans 30036817 AWJ20_4662 CDS HSP30 NC_031673.1 181907 182890 D Negative regulator of the H(+)-ATPase Pma1p; stress-responsive protein; hydrophobic plasma membrane localized; induced by heat shock, ethanol treatment, weak organic acid, glucose limitation, and entry into stationary phase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 1535043]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 8319300]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEP] [PMID 10206703]; GO_process: GO:0071361 - cellular response to ethanol [Evidence IEP] [PMID 10206703]; GO_process: GO:0034605 - cellular response to heat [Evidence IEP] [PMID 10206703]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IEP] [PMID 10206703]; GO_process: GO:0071470 - cellular response to osmotic stress [Evidence IEP] [PMID 10206703]; GO_process: GO:0034220 - ion transmembrane transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0032780 - negative regulation of ATPase activity [Evidence IMP] [PMID 9250391]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp30p 181907..182890 Sugiyamaella lignohabitans 30036818 AWJ20_4663 CDS NTG2 NC_031673.1 183038 184132 R DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase; involved in base excision repair, localizes to the nucleus; sumoylated; NTG2 has a paralog, NTG1, that arose from the whole genome duplication; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10471279]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19029246]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IEA]; GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic site) lyase activity [Evidence IDA] [PMID 14500818]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000703 - oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity [Evidence IDA,ISS] [PMID 9020769]; GO_process: GO:0000737 - DNA catabolic process, endonucleolytic [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006284 - base-excision repair [Evidence IEA]; GO_process: GO:0006284 - base-excision repair [Evidence IDA] [PMID 14500818]; GO_process: GO:0006285 - base-excision repair, AP site formation [Evidence IDA] [PMID 9826748]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; bifunctional N-glycosylase/AP lyase NTG2 complement(183038..184132) Sugiyamaella lignohabitans 30036819 AWJ20_4664 CDS CCR4 NC_031673.1 184427 186664 R CCR4-NOT core exoribonuclease subunit CCR4 complement(184427..186664) Sugiyamaella lignohabitans 30036820 AWJ20_4665 CDS TSA1 NC_031673.1 189102 189683 D Thioredoxin peroxidase; acts as both a ribosome-associated and free cytoplasmic antioxidant; self-associates to form high-molecular weight chaperone complex under oxidative stress; deletion causes mutator phenotype; protein abundance increases and forms cytoplasmic foci during DNA replication stress; chaperone activity is essential for growth under zinc deficiency; required for telomere length maintenance; TSA1 has a paralog, TSA2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10681558]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8344960]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18271751]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 18271751]; GO_function: GO:0016209 - antioxidant activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004601 - peroxidase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA,IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IDA] [PMID 17210445]; GO_function: GO:0043022 - ribosome binding [Evidence IDA] [PMID 18271751]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP] [PMID 7961686]; GO_function: GO:0008379 - thioredoxin peroxidase activity [Evidence IDA,IMP] [PMID 9799566]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 16251355]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IGI] [PMID 19851444]; GO_process: GO:0042262 - DNA protection [Evidence IMP] [PMID 19543365]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 8344960]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IMP] [PMID 9799566]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 18271751]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IDA,IMP] [PMID 8344960]; GO_process: GO:0061077 - chaperone-mediated protein folding [Evidence IMP] [PMID 24022485]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 16251355]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 20729566]; GO_process: GO:0033194 - response to hydroperoxide [Evidence IMP] [PMID 15210711]; thioredoxin peroxidase TSA1 189102..189683 Sugiyamaella lignohabitans 30036821 AWJ20_4666 CDS VAC7 NC_031673.1 189995 193624 R Integral vacuolar membrane protein; involved in vacuole inheritance and morphology; activates Fab1p kinase activity under basal conditions and also after hyperosmotic shock; GO_component: GO:0070772 - PAS complex [Evidence IDA,IPI] [PMID 19037259]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 9372916]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 9372916]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IDA] [PMID 19037259]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0033674 - positive regulation of kinase activity [Evidence IGI] [PMID 11950935]; GO_process: GO:0010513 - positive regulation of phosphatidylinositol biosynthetic process [Evidence IGI] [PMID 11950935]; Vac7p complement(189995..193624) Sugiyamaella lignohabitans 30036822 AWJ20_4667 CDS SWE1 NC_031673.1 195708 198686 D tyrosine protein kinase SWE1 195708..198686 Sugiyamaella lignohabitans 30036823 AWJ20_4668 CDS SWE1 NC_031673.1 198718 199479 D tyrosine protein kinase SWE1 198718..199479 Sugiyamaella lignohabitans 30036824 AWJ20_4669 CDS SYP1 NC_031673.1 202093 205500 D Negative regulator of WASP-Arp23 complex; involved in endocytic site formation; directly inhibits Las17p stimulation of Arp23 complex-mediated actin assembly in vitro; may regulate assembly and disassembly of the septin ring; colocalizes and interacts with septin subunits; potential role in actin cytoskeletal organization; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 11014808]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 11014808]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 11014808]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0004857 - enzyme inhibitor activity [Evidence IDA] [PMID 19962315]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence IMP] [PMID 19776351]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0043086 - negative regulation of catalytic activity [Evidence IDA] [PMID 19962315]; GO_process: GO:0032185 - septin cytoskeleton organization [Evidence IGI,IMP,IPI] [PMID 18791237]; Syp1p 202093..205500 Sugiyamaella lignohabitans 30036825 AWJ20_4670 CDS MAK16 NC_031673.1 205760 206533 R ribosome biosynthesis protein MAK16 complement(205760..206533) Sugiyamaella lignohabitans 30036827 AWJ20_4671 CDS AWJ20_4671 NC_031673.1 208769 211453 D uncharacterized protein 208769..211453 Sugiyamaella lignohabitans 30036828 AWJ20_4672 CDS BEM3 NC_031673.1 212643 217349 D Rho GTPase activating protein (RhoGAP); involved in control of the cytoskeleton organization; targets the essential Rho-GTPase Cdc42p, which controls establishment and maintenance of cell polarity, including bud-site assembly; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 17914457]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 17914457]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17914457]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 17914457]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 17914457]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 12455995]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IGI,IPI] [PMID 7498791]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 8227021]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA] [PMID 8300560]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8013906]; GO_process: GO:0035024 - negative regulation of Rho protein signal transduction [Evidence IGI,IMP,IPI] [PMID 17914457]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0031106 - septin ring organization [Evidence IGI] [PMID 14517318]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Bem3p 212643..217349 Sugiyamaella lignohabitans 30036829 AWJ20_4673 CDS LIP5 NC_031673.1 217620 218831 R Protein involved in biosynthesis of the coenzyme lipoic acid; has similarity to E. coli lipoic acid synthase; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA,IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0016992 - lipoate synthase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0016992 - lipoate synthase activity [Evidence ISA] [PMID 8349643]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009107 - lipoate biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009249 - protein lipoylation [Evidence IEA]; GO_process: GO:0009249 - protein lipoylation [Evidence IMP] [PMID 19570983]; putative lipoate synthase complement(217620..218831) Sugiyamaella lignohabitans 30036830 AWJ20_4674 CDS AWJ20_4674 NC_031673.1 218227 218514 D uncharacterized protein 218227..218514 Sugiyamaella lignohabitans 30036831 AWJ20_4675 CDS CAR1 NC_031673.1 222116 223063 D Arginase, catabolizes arginine to ornithine and urea; expression responds to both induction by arginine and nitrogen catabolite repression; disruption decreases production of carcinogen ethyl carbamate during wine fermentation and also enhances freeze tolerance; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 205532]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004053 - arginase activity [Evidence IEA,IEA]; GO_function: GO:0004053 - arginase activity [Evidence IMP] [PMID 14582193]; GO_function: GO:0004053 - arginase activity [Evidence IDA] [PMID 2404017]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016813 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines [Evidence IEA]; GO_function: GO:0030145 - manganese ion binding [Evidence IDA] [PMID 1939179]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0090369 - ornithine carbamoyltransferase inhibitor activity [Evidence IDA,IMP] [PMID 12679340]; GO_function: GO:0008270 - zinc ion binding [Evidence IDA] [PMID 1939179]; GO_process: GO:0019547 - arginine catabolic process to ornithine [Evidence IMP] [PMID 14582193]; GO_process: GO:0019547 - arginine catabolic process to ornithine [Evidence IDA] [PMID 2404017]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA,IEA]; GO_process: GO:0090368 - regulation of ornithine metabolic process [Evidence IDA,IMP] [PMID 12679340]; GO_process: GO:0000050 - urea cycle [Evidence IEA]; arginase 222116..223063 Sugiyamaella lignohabitans 30036832 AWJ20_4676 CDS HOS3 NC_031673.1 225880 228504 R Trichostatin A-insensitive homodimeric histone deacetylase (HDAC); specificity in vitro for histones H3, H4, H2A, and H2B; similar to Hda1p, Rpd3p, Hos1p, and Hos2p; deletion results in increased histone acetylation at rDNA repeats; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0032041 - NAD-dependent histone deacetylase activity (H3-K14 specific) [Evidence IEA]; GO_function: GO:0097372 - NAD-dependent histone deacetylase activity (H3-K18 specific) [Evidence IEA]; GO_function: GO:0046969 - NAD-dependent histone deacetylase activity (H3-K9 specific) [Evidence IEA]; GO_function: GO:0046970 - NAD-dependent histone deacetylase activity (H4-K16 specific) [Evidence IEA]; GO_function: GO:0004407 - histone deacetylase activity [Evidence IDA] [PMID 10535926]; GO_function: GO:0031078 - histone deacetylase activity (H3-K14 specific) [Evidence IEA]; GO_function: GO:0032129 - histone deacetylase activity (H3-K9 specific) [Evidence IEA]; GO_function: GO:0034739 - histone deacetylase activity (H4-K16 specific) [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0070932 - histone H3 deacetylation [Evidence IEA]; GO_process: GO:0070933 - histone H4 deacetylation [Evidence IEA]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 10535926]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17706600]; GO_process: GO:0000083 - regulation of transcription involved in G1/S transition of mitotic cell cycle [Evidence IGI,IPI] [PMID 19823668]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hos3p complement(225880..228504) Sugiyamaella lignohabitans 30036833 AWJ20_4677 CDS AWJ20_4677 NC_031673.1 229381 230076 D uncharacterized protein 229381..230076 Sugiyamaella lignohabitans 30036834 AWJ20_4678 CDS MNL1 NC_031673.1 230292 232610 R Alpha-1,2-specific exomannosidase of the endoplasmic reticulum; in complex with Pdi1p, generates a Man7GlcNac2 oligosaccharide signal on glycoproteins destined for ubiquitin-proteasome degradation; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 19279007]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0004559 - alpha-mannosidase activity [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0030246 - carbohydrate binding [Evidence IMP,ISS] [PMID 11375935]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IEA]; GO_function: GO:0004571 - mannosyl-oligosaccharide 1,2-alpha-mannosidase activity [Evidence IMP] [PMID 19124653]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11254655]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11375935]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006986 - response to unfolded protein [Evidence IEA]; alpha-1,2-mannosidase MNL1 complement(230292..232610) Sugiyamaella lignohabitans 30036835 AWJ20_4679 CDS RPS4A NC_031673.1 235127 235852 D Protein component of the small (40S) ribosomal subunit; mutation affects 20S pre-rRNA processing; homologous to mammalian ribosomal protein S4, no bacterial homolog; RPS4A has a paralog, RPS4B, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 6814480]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 40S subunit protein S4A 235127..235852 Sugiyamaella lignohabitans 30036836 AWJ20_4680 CDS AWJ20_4680 NC_031673.1 236320 238320 R uncharacterized protein complement(236320..238320) Sugiyamaella lignohabitans 30036838 AWJ20_4681 CDS MGM101 NC_031673.1 240136 241248 D Protein with a role in mitochondrial DNA recombinational repair; also involved in interstrand cross-link repair; binds to and catalyzes the annealing of single-stranded mtDNA; oligomerizes to form rings and filaments; related to Rad52-type recombination proteins, with limited overall similarity but sharing conserved functionally important residues; component of the mitochondrial nucleoid, required for the repair of oxidative mtDNA damage; GO_component: GO:0000262 - mitochondrial chromosome [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IEA,IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10209025]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA,IMP] [PMID 22948312]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 10209025]; GO_process: GO:0000733 - DNA strand renaturation [Evidence IDA] [PMID 22027892]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0036297 - interstrand cross-link repair [Evidence IGI] [PMID 22912599]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IEA]; GO_process: GO:0000725 - recombinational repair [Evidence IMP] [PMID 22027892]; Mgm101p 240136..241248 Sugiyamaella lignohabitans 30036839 AWJ20_4682 CDS AWJ20_4682 NC_031673.1 241986 243131 D uncharacterized protein 241986..243131 Sugiyamaella lignohabitans 30036840 AWJ20_4683 CDS AWJ20_4683 NC_031673.1 244559 244903 D uncharacterized protein 244559..244903 Sugiyamaella lignohabitans 30036841 AWJ20_4684 CDS RCF2 NC_031673.1 247121 247855 D Cytochrome c oxidase subunit; has a role in assembly of respiratory supercomplexes; similar to Rcf1p, and either Rcf1p or Rcf2p is required for late-stage assembly of the Cox12p and Cox13p subunits and for cytochrome c oxidase activity; associates with the cytochrome c oxidase - cytochrome bc1 supercomplex; null mutant accumulates reactive oxygen species; member of the conserved hypoxia induced gene family; C. elegans homolog is functional in yeast; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 22342701]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22310663]; GO_component: GO:0097249 - mitochondrial respiratory chain supercomplex [Evidence IDA] [PMID 22342701]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0033617 - mitochondrial respiratory chain complex IV assembly [Evidence IGI] [PMID 22310663]; Rcf2p 247121..247855 Sugiyamaella lignohabitans 30036842 AWJ20_4685 CDS TUF1 NC_031673.1 248524 249822 R Mitochondrial translation elongation factor Tu; comprises both GTPase and guanine nucleotide exchange factor activities, while these activities are found in separate proteins in S. pombe and humans; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence ISS] [PMID 6353412]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IGI] [PMID 15695360]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 3301847]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA,IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IGI] [PMID 15695360]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IDA] [PMID 3301847]; GO_function: GO:0003746 - translation elongation factor activity [Evidence ISS] [PMID 6353412]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI] [PMID 15695360]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI] [PMID 16777356]; GO_process: GO:0070125 - mitochondrial translational elongation [Evidence ISA] [PMID 3905388]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA,IEA]; translation elongation factor Tu complement(248524..249822) Sugiyamaella lignohabitans 30036843 AWJ20_4686 CDS PRC1 NC_031673.1 256171 257940 D Vacuolar carboxypeptidase Y (proteinase C, CPY); broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IDA,IMP] [PMID 8679540]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IDA,IMP] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence TAS] [PMID 8789256]; carboxypeptidase C PRC1 256171..257940 Sugiyamaella lignohabitans 30036844 AWJ20_4687 CDS AWJ20_4687 NC_031673.1 258967 259344 R uncharacterized protein complement(258967..259344) Sugiyamaella lignohabitans 30036845 AWJ20_4688 CDS TPD3 NC_031673.1 262449 264314 R Regulatory subunit A of the heterotrimeric PP2A complex; the heterotrimeric protein phosphatase 2A (PP2A) complex also contains regulatory subunit Cdc55p and either catalytic subunit Pph21p or Pph22p; required for cell morphogenesis and transcription by RNA polymerase III; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12388751]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12388751]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12388751]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12388751]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12388751]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IDA] [PMID 17550305]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 12388751]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA,IMP] [PMID 17550305]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IMP] [PMID 9001215]; GO_process: GO:0006417 - regulation of translation [Evidence IMP] [PMID 10329624]; protein phosphatase 2A structural subunit TPD3 complement(262449..264314) Sugiyamaella lignohabitans 30036846 AWJ20_4689 CDS NUO1 NC_031673.1 267515 268207 D NADH dehydrogenase (ubiquinone) Fe-S protein 8 267515..268207 Sugiyamaella lignohabitans 30036847 AWJ20_4690 CDS AWJ20_4690 NC_031673.1 275781 276900 R uncharacterized protein complement(join(275781..276779,276898..276900)) Sugiyamaella lignohabitans 30036849 AWJ20_4691 CDS AWJ20_4691 NC_031673.1 278236 279282 R uncharacterized protein complement(278236..279282) Sugiyamaella lignohabitans 30036850 AWJ20_4692 CDS AWJ20_4692 NC_031673.1 280105 280569 R uncharacterized protein complement(280105..280569) Sugiyamaella lignohabitans 30036851 AWJ20_4693 CDS AWJ20_4693 NC_031673.1 281151 281639 R uncharacterized protein complement(281151..281639) Sugiyamaella lignohabitans 30036852 AWJ20_4694 CDS MTM1 NC_031673.1 284118 285305 R Mitochondrial protein of the mitochondrial carrier family; high affinity pyridoxal 5'-phosphate transporter; involved in mitochondrial iron homeostasis and in activating mitochondrial Sod2p by facilitating insertion of an essential manganese cofactor; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 12890866]; GO_function: GO:0016530 - metallochaperone activity [Evidence IMP] [PMID 12890866]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IDA] [PMID 24184947]; GO_process: GO:0006828 - manganese ion transport [Evidence IMP] [PMID 12890866]; GO_process: GO:0006810 - transport [Evidence IEA]; Mtm1p complement(284118..285305) Sugiyamaella lignohabitans 30036853 AWJ20_4695 CDS KOG1 NC_031673.1 287332 291078 D Subunit of TORC1; TORC1 is a rapamycin-sensitive complex involved in growth control that contains Tor1p or Tor2p, Lst8p and Tco89p; contains four HEAT repeats and seven WD-40 repeats; may act as a scaffold protein to couple TOR and its effectors; GO_component: GO:0031931 - TORC1 complex [Evidence IEA]; GO_component: GO:0031931 - TORC1 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 16394584]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 17560372]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16394584]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0031929 - TOR signaling [Evidence IEA]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0009267 - cellular response to starvation [Evidence IMP] [PMID 12408816]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 12408816]; Kog1p 287332..291078 Sugiyamaella lignohabitans 30036854 AWJ20_4696 CDS LTV1 NC_031673.1 291263 292501 R Component of the GSE complex; GSE is required for proper sorting of amino acid permease Gap1p; required for ribosomal small subunit export from nucleus; required for growth at low temperature; GO_component: GO:0034448 - EGO complex [Evidence IDA] [PMID 16732272]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16888326]; GO_component: GO:0031902 - late endosome membrane [Evidence IDA] [PMID 16732272]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16888326]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 16738661]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 15611164]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006970 - response to osmotic stress [Evidence IMP] [PMID 15611164]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 15611164]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IGI,IMP] [PMID 16888326]; GO_process: GO:0006810 - transport [Evidence IEA]; Ltv1p complement(291263..292501) Sugiyamaella lignohabitans 30036855 AWJ20_4697 CDS AVT3 NC_031673.1 292889 295288 R Vacuolar transporter; exports large neutral amino acids from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11274162]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015186 - L-glutamine transmembrane transporter activity [Evidence IGI,IMP] [PMID 11274162]; GO_function: GO:0015188 - L-isoleucine transmembrane transporter activity [Evidence IGI,IMP] [PMID 11274162]; GO_function: GO:0005302 - L-tyrosine transmembrane transporter activity [Evidence IGI,IMP] [PMID 11274162]; GO_function: GO:0005215 - transporter activity [Evidence ISS] [PMID 11274162]; GO_process: GO:0032974 - amino acid transmembrane export from vacuole [Evidence IGI,IMP] [PMID 11274162]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Avt3p complement(292889..295288) Sugiyamaella lignohabitans 30036856 AWJ20_4698 CDS RPC25 NC_031673.1 296807 297172 R RNA polymerase III subunit C25; required for transcription initiation; forms a heterodimer with Rpc17p; paralog of Rpb7p; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 15612920]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 8065349]; GO_process: GO:0006384 - transcription initiation from RNA polymerase III promoter [Evidence IMP] [PMID 15612920]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase III subunit RPC25 complement(296807..297172) Sugiyamaella lignohabitans 30036857 AWJ20_4699 CDS SDH1 NC_031673.1 299330 301162 D Flavoprotein subunit of succinate dehydrogenase; couples the oxidation of succinate to the transfer of electrons to ubiquinone as part of the TCA cycle and the mitochondrial respiratory chain; FAD binding to Sdh1p is required for the assembly of the succinate dehydrogenase subunits; SDH1 has a paralog, YJL045W, that arose from the whole genome duplication; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IDA] [PMID 1939170]; GO_component: GO:0005749 - mitochondrial respiratory chain complex II [Evidence IDA] [PMID 9822678]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 2826438]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IDA] [PMID 18279395]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IMP] [PMID 1939170]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IEA]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IDA] [PMID 13445213]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IGI,IMP] [PMID 16232921]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IMP] [PMID 197391]; GO_function: GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IMP] [PMID 9730279]; GO_process: GO:0045333 - cellular respiration [Evidence IGI,IMP] [PMID 16232921]; GO_process: GO:0045333 - cellular respiration [Evidence IGI,IMP] [PMID 9730279]; GO_process: GO:0022900 - electron transport chain [Evidence IEA]; GO_process: GO:0006121 - mitochondrial electron transport, succinate to ubiquinone [Evidence IDA] [PMID 2826438]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IC] [PMID 13445213]; succinate dehydrogenase flavoprotein subunit SDH1 299330..301162 Sugiyamaella lignohabitans 30036858 AWJ20_4700 CDS PSF1 NC_031673.1 301515 302012 D Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IGI,IMP] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12768207]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12730134]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12768207]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; Psf1p 301515..302012 Sugiyamaella lignohabitans 30036861 AWJ20_4701 CDS RPT1 NC_031673.1 303013 304329 D ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; required for optimal CDC20 transcription; interacts with Rpn12p and Ubr1p; mutant has aneuploidy tolerance; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008540 - proteasome regulatory particle, base subcomplex [Evidence IDA] [PMID 9741626]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 7754704]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0045899 - positive regulation of RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 19843524]; GO_process: GO:0045732 - positive regulation of protein catabolic process [Evidence IDA] [PMID 15135049]; GO_process: GO:0070682 - proteasome regulatory particle assembly [Evidence IMP] [PMID 19412160]; GO_process: GO:0030163 - protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IPI] [PMID 15135049]; proteasome regulatory particle base subunit RPT1 303013..304329 Sugiyamaella lignohabitans 30036862 AWJ20_4703 CDS DBR1 NC_031673.1 304987 306528 R RNA lariat debranching enzyme; catalyzes debranching of lariat introns formed during pre-mRNA splicing; required for efficient Ty1 transposition; knockdown of human homolog Dbr1 rescues toxicity of RNA-binding proteins TDP-43 and FUS which are implicated in amyotrophic lateral sclerosis (ALS), suggests potential therapeutic target for ALS and related TDP-43 proteinopathies; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 1850323]; GO_function: GO:0008419 - RNA lariat debranching enzyme activity [Evidence IDA,IMP] [PMID 1850323]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO_process: GO:0006401 - RNA catabolic process [Evidence IDA,IMP] [PMID 1850323]; GO_process: GO:0006397 - mRNA processing [Evidence IEA,IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IMP] [PMID 24919400]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9055077]; GO_process: GO:0016074 - snoRNA metabolic process [Evidence IMP] [PMID 9740128]; GO_process: GO:0032197 - transposition, RNA-mediated [Evidence IMP] [PMID 10652222]; Dbr1p complement(304987..306528) Sugiyamaella lignohabitans 30036864 AWJ20_4704 CDS BFR2 NC_031673.1 307101 308591 D Essential protein that is a component of 90S preribosomes; may be involved in rRNA processing; multicopy suppressor of sensitivity to Brefeldin A; expression is induced during lag phase and also by cold shock; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 15590835]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Bfr2p 307101..308591 Sugiyamaella lignohabitans 30036865 AWJ20_4705 CDS MCR1 NC_031673.1 311296 311814 R Mitochondrial NADH-cytochrome b5 reductase; involved in ergosterol biosynthesis; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16689936]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 8001120]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 8001120]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004128 - cytochrome-b5 reductase activity, acting on NAD(P)H [Evidence IEA]; GO_function: GO:0004128 - cytochrome-b5 reductase activity, acting on NAD(P)H [Evidence IDA] [PMID 8001120]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11420140]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 10622712]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Mcr1p complement(311296..311814) Sugiyamaella lignohabitans 30036866 AWJ20_4706 CDS AWJ20_4706 NC_031673.1 314138 314962 D NADHX dehydratase; converts (S)-NADHX to NADH in an ATP-dependent manner; homologous to Carkd in mammals, and the C-terminal domain of YjeF in E.coli; enzyme is widespread in eukaryotes, prokaryotes and archaea; YKL151C promoter contains STREs (stress response elements) and expression is induced by heat shock or methyl methanesulfonate; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0047453 - ATP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0047453 - ATP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IDA] [PMID 21994945]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0046496 - nicotinamide nucleotide metabolic process [Evidence IEA]; GO_process: GO:0046496 - nicotinamide nucleotide metabolic process [Evidence IDA] [PMID 21994945]; NADHX dehydratase 314138..314962 Sugiyamaella lignohabitans 30036867 AWJ20_4707 CDS AWJ20_4707 NC_031673.1 315195 315932 R uncharacterized protein complement(315195..315932) Sugiyamaella lignohabitans 30036868 AWJ20_4708 CDS CBF1 NC_031673.1 316979 317716 R Basic helix-loop-helix (bHLH) protein; forms homodimer to bind E-box consensus sequence CACGTG present at MET gene promoters and centromere DNA element I (CDEI); affects nucleosome positioning at this motif; associates with other transcription factors such as Met4p and Isw1p to mediate transcriptional activation or repression; associates with kinetochore proteins, required for chromosome segregation; protein abundance increases in response to DNA replication stress; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA,IEA]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 9407032]; GO_component: GO:0000776 - kinetochore [Evidence IPI] [PMID 11070082]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IMP] [PMID 20935143]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IPI] [PMID 8665859]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 7891681]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 9894911]; GO_function: GO:0001078 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription [Evidence IDA] [PMID 15302821]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 7891681]; GO_function: GO:0001103 - RNA polymerase II repressing transcription factor binding [Evidence IDA] [PMID 12820973]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IMP] [PMID 12820973]; GO_function: GO:0001076 - RNA polymerase II transcription factor binding transcription factor activity [Evidence IMP] [PMID 20935143]; GO_function: GO:0019237 - centromeric DNA binding [Evidence IDA] [PMID 11222754]; GO_function: GO:0019237 - centromeric DNA binding [Evidence IDA] [PMID 2057354]; GO_function: GO:0019237 - centromeric DNA binding [Evidence IDA] [PMID 2249662]; GO_function: GO:0019237 - centromeric DNA binding [Evidence IDA] [PMID 9407032]; GO_function: GO:0046983 - protein dimerization activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 15111622]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 21131275]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 2249662]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 7891681]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 2057354]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 2185892]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 2188087]; GO_process: GO:0007059 - chromosome segregation [Evidence IGI] [PMID 9584087]; GO_process: GO:0061427 - negative regulation of ceramide biosynthetic process by negative regulation of transcription from RNA Polymerase II promoter [Evidence IMP] [PMID 15302821]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10921921]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22696683]; GO_process: GO:1900375 - positive regulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17351075]; GO_process: GO:1900375 - positive regulation of inositol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 20935143]; GO_process: GO:1900478 - positive regulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7601277]; GO_process: GO:1900478 - positive regulation of sulfate assimilation by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7891681]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 22696683]; GO_process: GO:0061432 - regulation of transcription from RNA polymerase II promoter in response to methionine [Evidence IMP] [PMID 7891681]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Cbf1p complement(316979..317716) Sugiyamaella lignohabitans 30036869 AWJ20_4710 CDS BRN1 NC_031673.1 319055 321037 R Subunit of the condensin complex; required for chromosome condensation and for clustering of tRNA genes at the nucleolus; may influence multiple aspects of chromosome transmission; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0000796 - condensin complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IPI,ISS] [PMID 10749931]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IDA] [PMID 10811823]; GO_component: GO:0000799 - nuclear condensin complex [Evidence IPI,ISS] [PMID 7698648]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10749931]; GO_function: GO:0003682 - chromatin binding [Evidence IGI] [PMID 11864994]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IMP] [PMID 24062159]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence IEA]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IEA]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IGI,IMP] [PMID 10749931]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 10811823]; GO_process: GO:0007076 - mitotic chromosome condensation [Evidence IMP] [PMID 7698648]; GO_process: GO:0007067 - mitotic nuclear division [Evidence IEA]; GO_process: GO:0000070 - mitotic sister chromatid segregation [Evidence IMP] [PMID 10749931]; GO_process: GO:0070058 - tRNA gene clustering [Evidence IMP] [PMID 18708579]; Brn1p complement(319055..321037) Sugiyamaella lignohabitans 30036872 AWJ20_4711 CDS IME4 NC_031673.1 321891 323192 D mRNA (N6-adenosine)-methyltransferase 321891..323192 Sugiyamaella lignohabitans 30036873 AWJ20_4712 CDS CUL3 NC_031673.1 324452 327079 D Ubiquitin-protein ligase; forms a complex with Elc1p that polyubiquitylates monoubiquitylated RNA polymerase II to trigger its proteolysis; cullin family member with similarity to Cdc53p and human CUL3; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IDA] [PMID 16675952]; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IMP] [PMID 17296727]; GO_component: GO:0031461 - cullin-RING ubiquitin ligase complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 12676951]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16675952]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17296727]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IC] [PMID 12676951]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence ISS] [PMID 9531531]; cullin CUL3 324452..327079 Sugiyamaella lignohabitans 30036874 AWJ20_4713 CDS AWJ20_4713 NC_031673.1 327291 328283 R uncharacterized protein complement(327291..328283) Sugiyamaella lignohabitans 30036875 AWJ20_4714 CDS RPS17B NC_031673.1 330502 330918 R Ribosomal protein 51 (rp51) of the small (40s) subunit; homologous to mammalian ribosomal protein S17, no bacterial homolog; RPS17B has a paralog, RPS17A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IBA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence NAS] [PMID 9559554]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence NAS] [PMID 9559554]; GO_process: GO:0002181 - cytoplasmic translation [Evidence NAS] [PMID 9559554]; GO_process: GO:0000028 - ribosomal small subunit assembly [Evidence IMP] [PMID 3915776]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IBA]; ribosomal 40S subunit protein S17B complement(330502..330918) Sugiyamaella lignohabitans 30036876 AWJ20_4715 CDS ADA2 NC_031673.1 332839 334332 D chromatin-binding transcription regulator ADA2 332839..334332 Sugiyamaella lignohabitans 30036877 AWJ20_4716 CDS AWJ20_4716 NC_031673.1 334548 335276 R uncharacterized protein complement(334548..335276) Sugiyamaella lignohabitans 30036878 AWJ20_4717 CDS UTP6 NC_031673.1 337729 338937 R Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 15231838]; GO_component: GO:0034388 - Pwp2p-containing subcomplex of 90S preribosome [Evidence IDA] [PMID 17515605]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp6p complement(337729..338937) Sugiyamaella lignohabitans 30036879 AWJ20_4718 CDS AMF1 NC_031673.1 339974 341797 D Putative paralog of ATR1; but not required for boron tolerance; member of the DHA2 family of drug:H+ antiporters; YOR378W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Amf1p 339974..341797 Sugiyamaella lignohabitans 30036880 AWJ20_4719 CDS YPK1 NC_031673.1 343594 346173 R serine/threonine protein kinase YPK1 complement(join(343594..345933,346144..346173)) Sugiyamaella lignohabitans 30036881 AWJ20_4720 CDS HSL1 NC_031673.1 352921 356430 D protein kinase HSL1 352921..356430 Sugiyamaella lignohabitans 30036883 AWJ20_4721 CDS NAM9 NC_031673.1 356877 358460 D Mitochondrial ribosomal component of the small subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; mitochondrial 37S ribosomal protein NAM9 356877..358460 Sugiyamaella lignohabitans 30036884 AWJ20_4722 CDS SRV2 NC_031673.1 358683 360675 R CAP (cyclase-associated protein); N-terminus binds adenylate cyclase and facilitates activation by RAS; N-terminus forms novel hexameric star-shaped shuriken structures that directly catalyze cofilin-mediated severing of actin filaments; C-terminus, in physically and genetically separate activity, binds and recycles cofilin bound, ADP-actin monomers, facilitating regulation of actin dynamics and cell morphogenesis; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 8552082]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IDA] [PMID 19201756]; GO_function: GO:0008179 - adenylate cyclase binding [Evidence IDA] [PMID 2184942]; GO_process: GO:0007265 - Ras protein signal transduction [Evidence IMP] [PMID 9774417]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence IDA,IMP] [PMID 19201756]; GO_process: GO:0051014 - actin filament severing [Evidence IDA] [PMID 23135996]; GO_process: GO:0000902 - cell morphogenesis [Evidence IEA]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IEA]; Srv2p complement(join(358683..360369,360614..360675)) Sugiyamaella lignohabitans 30036885 AWJ20_4723 CDS ARP5 NC_031673.1 361197 363431 D Nuclear actin-related protein involved in chromatin remodeling; component of chromatin-remodeling enzyme complexes; promotes nucleosome shifts in the 3 prime direction; GO_component: GO:0031011 - Ino80 complex [Evidence IEA]; GO_component: GO:0031011 - Ino80 complex [Evidence IDA,IMP] [PMID 12887900]; GO_component: GO:0031011 - Ino80 complex [Evidence IDA] [PMID 15525518]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10923024]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11011149]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 12887900]; GO_process: GO:0006338 - chromatin remodeling [Evidence IPI] [PMID 15525518]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IDA] [PMID 12887900]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Arp5p 361197..363431 Sugiyamaella lignohabitans 30036886 AWJ20_4725 CDS NCL1 NC_031673.1 364114 365994 R S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase; methylates cytosine to m5C at several positions in tRNAs and intron-containing pre-tRNAs; increases proportion of tRNALeu(CAA) with m5C at wobble position in response to hydrogen peroxide, causing selective translation of mRNA from genes enriched in TTG codon; loss of NCL1 confers hypersensitivity to oxidative stress; similar to Nop2p and human proliferation associated nucleolar protein p120; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9767141]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016428 - tRNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO_function: GO:0016428 - tRNA (cytosine-5-)-methyltransferase activity [Evidence IDA] [PMID 10445884]; GO_function: GO:0000049 - tRNA binding [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 17567576]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0070301 - cellular response to hydrogen peroxide [Evidence IMP] [PMID 22760636]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 10445884]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0002127 - wobble base cytosine methylation [Evidence IMP] [PMID 22760636]; Ncl1p complement(364114..365994) Sugiyamaella lignohabitans 30036888 AWJ20_4726 CDS GCD10 NC_031673.1 366366 367721 D Subunit of tRNA (1-methyladenosine) methyltransferase with Gcd14p; required for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9851972]; GO_component: GO:0031515 - tRNA (m1A) methyltransferase complex [Evidence IDA,IPI] [PMID 10779558]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0016429 - tRNA (adenine-N1-)-methyltransferase activity [Evidence IDA] [PMID 10779558]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0030488 - tRNA methylation [Evidence IDA] [PMID 10779558]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; Gcd10p 366366..367721 Sugiyamaella lignohabitans 30036889 AWJ20_4727 CDS MTQ1 NC_031673.1 367873 368628 R S-adenosylmethionine-dependent methyltransferase; methylates translational release factor Mrf1p; similar to E.coli PrmC; is not an essential gene; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA,IMP] [PMID 16321977]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008276 - protein methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006479 - protein methylation [Evidence IEA]; GO_process: GO:0006451 - translational readthrough [Evidence IGI] [PMID 16321977]; Mtq1p complement(367873..368628) Sugiyamaella lignohabitans 30036890 AWJ20_4728 CDS AWJ20_4728 NC_031673.1 369392 370609 D Putative cysteine synthase; localized to the mitochondrial outer membrane; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004124 - cysteine synthase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]; putative cysteine synthase 369392..370609 Sugiyamaella lignohabitans 30036891 AWJ20_4729 CDS PPH21 NC_031673.1 370763 371788 R Catalytic subunit of protein phosphatase 2A (PP2A); functionally redundant with Pph22p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis; forms nuclear foci upon DNA replication stress; PPH21 has a paralog, PPH22, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IDA] [PMID 17550305]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA,IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IMP] [PMID 2176150]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IGI] [PMID 12518319]; GO_process: GO:0007015 - actin filament organization [Evidence TAS] [PMID 9001215]; GO_process: GO:0007117 - budding cell bud growth [Evidence TAS] [PMID 9001215]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IPI] [PMID 9001215]; GO_process: GO:0006470 - protein dephosphorylation [Evidence TAS] [PMID 9001215]; GO_process: GO:0006417 - regulation of translation [Evidence IPI] [PMID 10329624]; phosphoprotein phosphatase 2A catalytic subunit PPH21 complement(370763..371788) Sugiyamaella lignohabitans 30036892 AWJ20_4730 CDS TAF12 NC_031673.1 374864 376864 D Subunit (61/68 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification, similar to histone H2A; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA,IPI] [PMID 12501245]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0017025 - TBP-class protein binding [Evidence IDA] [PMID 10751405]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10817999]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 9674426]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0006352 - DNA-templated transcription, initiation [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12600943]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0016568 - chromatin modification [Evidence IDA,IMP] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 10751405]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11561287]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 12582246]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf12p 374864..376864 Sugiyamaella lignohabitans 30036894 AWJ20_4731 CDS AWJ20_4731 NC_031673.1 377202 377861 R uncharacterized protein complement(377202..377861) Sugiyamaella lignohabitans 30036895 AWJ20_4732 CDS SNF7 NC_031673.1 379854 380492 D One of four subunits of the ESCRT-III complex; involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway; recruited from the cytoplasm to endosomal membranes; ESCRT-III stands for endosomal sorting complex required for transport III; GO_component: GO:0000815 - ESCRT III complex [Evidence IDA] [PMID 12194857]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9606181]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 15086794]; GO_process: GO:0071454 - cellular response to anoxia [Evidence IMP] [PMID 20402793]; GO_process: GO:0070676 - intralumenal vesicle formation [Evidence IMP] [PMID 19234443]; GO_process: GO:0045324 - late endosome to vacuole transport [Evidence IMP] [PMID 9606181]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IC] [PMID 15086794]; ESCRT-III subunit protein SNF7 379854..380492 Sugiyamaella lignohabitans 30036896 AWJ20_4733 CDS SED5 NC_031673.1 380498 382045 R cis-Golgi t-SNARE syntaxin; required for vesicular transport between the ER and the Golgi complex; binds at least 9 SNARE proteins; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 11001058]; GO_component: GO:0031201 - SNARE complex [Evidence IDA] [PMID 11959998]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 9725919]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 1400588]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IEA]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 11001058]; GO_function: GO:0005484 - SNAP receptor activity [Evidence IDA] [PMID 11959998]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IMP] [PMID 9545229]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 7596416]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence IDA] [PMID 11001046]; GO_process: GO:0048280 - vesicle fusion with Golgi apparatus [Evidence IMP] [PMID 9545229]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Sed5p complement(380498..382045) Sugiyamaella lignohabitans 30036897 AWJ20_4734 CDS AWJ20_4734 NC_031673.1 383190 384938 D uncharacterized protein 383190..384938 Sugiyamaella lignohabitans 30036898 AWJ20_4735 CDS AWJ20_4735 NC_031673.1 386967 387689 D uncharacterized protein 386967..387689 Sugiyamaella lignohabitans 30036899 AWJ20_4736 CDS RSM24 NC_031673.1 387936 388418 R Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; mitochondrial 37S ribosomal protein RSM24 complement(387936..388418) Sugiyamaella lignohabitans 30036900 AWJ20_4737 CDS RSM7 NC_031673.1 389936 390820 D Mitochondrial ribosomal protein of the small subunit; has similarity to E. coli S7 ribosomal protein; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein RSM7 389936..390820 Sugiyamaella lignohabitans 30036901 AWJ20_4738 CDS HMO1 NC_031673.1 393587 394708 D Chromatin associated high mobility group (HMG) family member; involved in genome maintenance; rDNA-binding component of the Pol I transcription system; associates with a 5'-3' DNA helicase and Fpr1p, a prolyl isomerase; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8969238]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 16612005]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 17646381]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12374750]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 22553361]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 15507436]; GO_function: GO:0008301 - DNA binding, bending [Evidence IDA] [PMID 16533046]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 15507436]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 16533046]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 15507436]; GO_function: GO:0000400 - four-way junction DNA binding [Evidence IDA] [PMID 16533046]; GO_process: GO:0060962 - regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17875934]; GO_process: GO:0060962 - regulation of ribosomal protein gene transcription from RNA polymerase II promoter [Evidence IGI,IMP] [PMID 18187511]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IDA] [PMID 18451108]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IGI] [PMID 12374750]; GO_process: GO:0006356 - regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 16612005]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hmo1p join(393587..393694,393767..394708) Sugiyamaella lignohabitans 30036902 AWJ20_4739 CDS ARE2 NC_031673.1 400511 402397 D Acyl-CoA:sterol acyltransferase; endoplasmic reticulum enzyme that contributes the major sterol esterification activity in the presence of oxygen; ARE2 has a paralog, ARE1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10672016]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0008374 - O-acyltransferase activity [Evidence IEA]; GO_function: GO:0034736 - cholesterol O-acyltransferase activity [Evidence IEA]; GO_function: GO:0034737 - ergosterol O-acyltransferase activity [Evidence IGI,IMP] [PMID 10672016]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0008204 - ergosterol metabolic process [Evidence IGI,IMP] [PMID 10672016]; Are2p 400511..402397 Sugiyamaella lignohabitans 30036903 AWJ20_4740 CDS AWJ20_4740 NC_031673.1 403065 404108 R uncharacterized protein complement(403065..404108) Sugiyamaella lignohabitans 30036905 AWJ20_4741 CDS SKN7 NC_031673.1 404681 406552 R kinase-regulated stress-responsive transcription factor SKN7 complement(404681..406552) Sugiyamaella lignohabitans 30036906 AWJ20_4742 CDS SCH9 NC_031673.1 412627 414981 R serine/threonine protein kinase SCH9 complement(412627..414981) Sugiyamaella lignohabitans 30036907 AWJ20_4743 CDS ALG1 NC_031673.1 417173 418498 R Mannosyltransferase; involved in asparagine-linked glycosylation in the endoplasmic reticulum (ER); essential for viability, mutation is functionally complemented by human ortholog; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IPI] [PMID 15044395]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 2182636]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0019187 - beta-1,4-mannosyltransferase activity [Evidence IDA] [PMID 6368538]; GO_function: GO:0004578 - chitobiosyldiphosphodolichol beta-mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA,IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006490 - oligosaccharide-lipid intermediate biosynthetic process [Evidence IMP] [PMID 7037780]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 6369318]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; chitobiosyldiphosphodolichol beta-1,4 mannosyltransferase complement(417173..418498) Sugiyamaella lignohabitans 30036908 AWJ20_4744 CDS AWJ20_4744 NC_031673.1 419425 420120 R calmodulin complement(419425..420120) Sugiyamaella lignohabitans 30036909 AWJ20_4745 CDS CMD1 NC_031673.1 419597 420163 D Calmodulin; Ca++ binding protein that regulates Ca++ independent processes (mitosis, bud growth, actin organization, endocytosis, etc.) and Ca++ dependent processes (stress-activated pathways), targets include Nuf1p, Myo2p and calcineurin; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 1639847]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 1639847]; GO_component: GO:0005823 - central plaque of spindle pole body [Evidence IDA] [PMID 8601600]; GO_component: GO:0005823 - central plaque of spindle pole body [Evidence IDA] [PMID 8886974]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 1639847]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 1639847]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 3533275]; GO_function: GO:0005509 - calcium ion binding [Evidence IDA] [PMID 8461293]; GO_function: GO:0048306 - calcium-dependent protein binding [Evidence IDA] [PMID 1321337]; GO_function: GO:0048306 - calcium-dependent protein binding [Evidence IPI] [PMID 9756868]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 10749918]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 7925277]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 8247006]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 8294515]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 9450989]; GO_process: GO:0006607 - NLS-bearing protein import into nucleus [Evidence IMP] [PMID 17878171]; GO_process: GO:0007114 - cell budding [Evidence IMP] [PMID 8310294]; GO_process: GO:0007010 - cytoskeleton organization [Evidence IMP] [PMID 8310294]; GO_process: GO:0000742 - karyogamy involved in conjugation with cellular fusion [Evidence IGI,IMP] [PMID 12836012]; GO_process: GO:0016237 - microautophagy [Evidence IMP] [PMID 16055436]; GO_process: GO:0006661 - phosphatidylinositol biosynthetic process [Evidence IGI,IMP] [PMID 12079494]; GO_process: GO:0006898 - receptor-mediated endocytosis [Evidence IMP] [PMID 7988551]; GO_process: GO:0006898 - receptor-mediated endocytosis [Evidence IMP] [PMID 9450989]; GO_process: GO:0051300 - spindle pole body organization [Evidence IMP] [PMID 1469052]; GO_process: GO:0042991 - transcription factor import into nucleus [Evidence IMP] [PMID 17878171]; GO_process: GO:0042144 - vacuole fusion, non-autophagic [Evidence IDA,IMP] [PMID 9859992]; calmodulin 419597..420163 Sugiyamaella lignohabitans 30036910 AWJ20_4746 CDS AWJ20_4746 NC_031673.1 424057 427372 D uncharacterized protein join(424057..424204,424335..427372) Sugiyamaella lignohabitans 30036911 AWJ20_4747 CDS AWJ20_4747 NC_031673.1 428316 429392 D uncharacterized protein 428316..429392 Sugiyamaella lignohabitans 30036912 AWJ20_4748 CDS HRT3 NC_031673.1 429684 431108 R Putative SCF-ubiquitin ligase F-box protein; based on both genetic and physical interactions and sequence similarity; identified in association with Cdc53p, Skp1p and Ubi4 in large and small-scale studies; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA] [PMID 10582239]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IDA,IPI] [PMID 14747994]; GO_component: GO:0019005 - SCF ubiquitin ligase complex [Evidence IPI] [PMID 17141224]; GO_function: GO:0030674 - protein binding, bridging [Evidence ISA] [PMID 10582239]; GO_function: GO:0030674 - protein binding, bridging [Evidence ISA] [PMID 9635407]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence ISA] [PMID 10582239]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence ISA] [PMID 9635407]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence IGI,ISA] [PMID 10582239]; GO_process: GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [Evidence ISA] [PMID 9635407]; GO_process: GO:0071406 - cellular response to methylmercury [Evidence IMP] [PMID 17141224]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; SCF ubiquitin ligase complex subunit HRT3 complement(429684..431108) Sugiyamaella lignohabitans 30036913 AWJ20_4749 CDS SPA2 NC_031673.1 434099 436300 D Component of the polarisome; functions in actin cytoskeletal organization during polarized growth; acts as a scaffold for Mkk1p and Mpk1p cell wall integrity signaling components; potential Cdc28p substrate; coding sequence contains length polymorphisms in different strains; SPA2 has a paralog, SPH1, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 23673619]; GO_component: GO:0051286 - cell tip [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9214378]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 2647769]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9214378]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 2647769]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9214378]; GO_component: GO:0000133 - polarisome [Evidence IDA] [PMID 9632790]; GO_function: GO:0005078 - MAP-kinase scaffold activity [Evidence IDA,IMP] [PMID 12361575]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 8909546]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 10866679]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8013906]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8909546]; GO_process: GO:0036267 - invasive filamentous growth [Evidence IGI] [PMID 9443897]; GO_process: GO:0031382 - mating projection assembly [Evidence IGI] [PMID 9443897]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IGI,IMP] [PMID 12857882]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IMP] [PMID 19633059]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9055077]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9443897]; GO_process: GO:0008360 - regulation of cell shape [Evidence IEA]; GO_process: GO:0031384 - regulation of initiation of mating projection growth [Evidence IMP] [PMID 14734532]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 10085294]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 11740491]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 12857882]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 16166638]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 8909546]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 9571251]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 9632790]; GO_process: GO:0031385 - regulation of termination of mating projection growth [Evidence IMP] [PMID 14734532]; Spa2p 434099..436300 Sugiyamaella lignohabitans 30036914 AWJ20_4750 CDS SPA2 NC_031673.1 436538 437770 D Component of the polarisome; functions in actin cytoskeletal organization during polarized growth; acts as a scaffold for Mkk1p and Mpk1p cell wall integrity signaling components; potential Cdc28p substrate; coding sequence contains length polymorphisms in different strains; SPA2 has a paralog, SPH1, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 23673619]; GO_component: GO:0051286 - cell tip [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9214378]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12361575]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 2647769]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9214378]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 2647769]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9214378]; GO_component: GO:0000133 - polarisome [Evidence IDA] [PMID 9632790]; GO_function: GO:0005078 - MAP-kinase scaffold activity [Evidence IDA,IMP] [PMID 12361575]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence IMP] [PMID 8909546]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 10866679]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8013906]; GO_process: GO:0030010 - establishment of cell polarity [Evidence IMP] [PMID 8909546]; GO_process: GO:0036267 - invasive filamentous growth [Evidence IGI] [PMID 9443897]; GO_process: GO:0031382 - mating projection assembly [Evidence IGI] [PMID 9443897]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IGI,IMP] [PMID 12857882]; GO_process: GO:2000251 - positive regulation of actin cytoskeleton reorganization [Evidence IMP] [PMID 19633059]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9055077]; GO_process: GO:0007124 - pseudohyphal growth [Evidence IMP] [PMID 9443897]; GO_process: GO:0008360 - regulation of cell shape [Evidence IEA]; GO_process: GO:0031384 - regulation of initiation of mating projection growth [Evidence IMP] [PMID 14734532]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 10085294]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 11740491]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 12857882]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 16166638]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 8909546]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 9571251]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP] [PMID 9632790]; GO_process: GO:0031385 - regulation of termination of mating projection growth [Evidence IMP] [PMID 14734532]; Spa2p 436538..437770 Sugiyamaella lignohabitans 30036916 AWJ20_4751 CDS AMD2 NC_031673.1 438011 439675 R Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; Amd2p complement(438011..439675) Sugiyamaella lignohabitans 30036917 AWJ20_4752 CDS AWJ20_4752 NC_031673.1 442508 442924 R Putative gluconokinase; sequence similarity to bacterial and human gluconokinase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; upregulated by deletion of the RNAP-II associated factor, PAF1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0046316 - gluconokinase activity [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0046177 - D-gluconate catabolic process [Evidence IEA]; GO_process: GO:0019521 - D-gluconate metabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; gluconokinase complement(442508..442924) Sugiyamaella lignohabitans 30036918 AWJ20_4753 CDS MRPL15 NC_031673.1 443791 444552 R Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004525 - ribonuclease III activity [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; mitochondrial 54S ribosomal protein YmL15 complement(443791..444552) Sugiyamaella lignohabitans 30036919 AWJ20_4754 CDS ROK1 NC_031673.1 445059 446798 D RNA-dependent ATPase; involved in pre-rRNA processing at sites A0, A1, and A2, and in control of cell cycle progression; contains two upstream open reading frames (uORFs) in 5' untranslated region which regulate translation; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9154839]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 18975973]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9154839]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9154839]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9154839]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0048254 - snoRNA localization [Evidence IMP] [PMID 18833290]; RNA-dependent ATPase ROK1 445059..446798 Sugiyamaella lignohabitans 30036920 AWJ20_4755 CDS ATP20 NC_031673.1 447044 447526 R Subunit g of the mitochondrial F1F0 ATP synthase; reversibly phosphorylated on two residues; unphosphorylated form is required for dimerization of the ATP synthase complex, which in turn determines oligomerization of the complex and the shape of inner membrane cristae; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO_component: GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IMP,IPI,ISS] [PMID 10336613]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO_function: GO:0015078 - hydrogen ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0005198 - structural molecule activity [Evidence IMP,IPI] [PMID 9857174]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,ISS] [PMID 10336613]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,IPI] [PMID 9857174]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 19528297]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 17761666]; GO_process: GO:0035786 - protein complex oligomerization [Evidence IMP] [PMID 16551625]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit g complement(447044..447526) Sugiyamaella lignohabitans 30036921 AWJ20_4756 CDS AWJ20_4756 NC_031673.1 448978 450198 D uncharacterized protein 448978..450198 Sugiyamaella lignohabitans 30036922 AWJ20_4757 CDS FMO1 NC_031673.1 450577 452274 D Flavin-containing monooxygenase; localized to the cytoplasmic face of the ER membrane; catalyzes oxidation of biological thiols to maintain the ER redox buffer ratio for correct folding of disulfide-bonded proteins; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 10077572]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IEA]; GO_function: GO:0004499 - N,N-dimethylaniline monooxygenase activity [Evidence IDA] [PMID 10600176]; GO_function: GO:0050661 - NADP binding [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 10077572]; Fmo1p 450577..452274 Sugiyamaella lignohabitans 30036923 AWJ20_4758 CDS DUS1 NC_031673.1 452728 454086 D Dihydrouridine synthase; member of a widespread family of conserved proteins including Smm1p, Dus3p, and Dus4p; modifies pre-tRNA(Phe) at U17; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IDA] [PMID 12003496]; GO_function: GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IMP] [PMID 14970222]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0002943 - tRNA dihydrouridine synthesis [Evidence IEA]; GO_process: GO:0006400 - tRNA modification [Evidence IDA] [PMID 12003496]; GO_process: GO:0006400 - tRNA modification [Evidence IMP] [PMID 14970222]; GO_process: GO:0008033 - tRNA processing [Evidence IEA,IEA]; Dus1p 452728..454086 Sugiyamaella lignohabitans 30036924 AWJ20_4759 CDS cwf15 NC_031673.1 455674 456630 R complexed with Cdc5 protein Cwf15 complement(455674..456630) Sugiyamaella lignohabitans 30036925 AWJ20_4760 CDS NBP2 NC_031673.1 459024 460070 D Protein involved in the HOG (high osmolarity glycerol) pathway; negatively regulates Hog1p by recruitment of phosphatase Ptc1p the Pbs2p-Hog1p complex; interacts with Bck1p and down regulates the cell wall integrity pathway; found in the nucleus and cytoplasm, contains an SH3 domain and a Ptc1p binding domain (PBM); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14573466]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006972 - hyperosmotic response [Evidence IMP,IPI] [PMID 14685261]; GO_process: GO:0000200 - inactivation of MAPK activity involved in cell wall organization or biogenesis [Evidence IMP,IPI] [PMID 22570491]; GO_process: GO:0006469 - negative regulation of protein kinase activity [Evidence IDA] [PMID 14685261]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 14573466]; Nbp2p 459024..460070 Sugiyamaella lignohabitans 30036927 AWJ20_4761 CDS AWJ20_4761 NC_031673.1 460379 461458 R uncharacterized protein complement(460379..461458) Sugiyamaella lignohabitans 30036928 AWJ20_4762 CDS RLF2 NC_031673.1 461752 464247 R Largest subunit (p90) of the Chromatin Assembly Complex (CAF-1); chromatin assembly by CAF-1 is important for multiple processes including silencing at telomeres, mating type loci, and rDNA; maintenance of kinetochore structure; deactivation of the DNA damage checkpoint after DNA repair; and chromatin dynamics during transcription; GO_component: GO:0033186 - CAF-1 complex [Evidence IDA] [PMID 9030687]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 11782447]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9030688]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 16503640]; GO_process: GO:0006335 - DNA replication-dependent nucleosome assembly [Evidence IDA] [PMID 9030687]; GO_process: GO:0006335 - DNA replication-dependent nucleosome assembly [Evidence IMP] [PMID 9030688]; Rlf2p complement(461752..464247) Sugiyamaella lignohabitans 30036929 AWJ20_4763 CDS VPS70 NC_031673.1 465594 468080 R hypothetical protein involved in vacuolar protein sorting; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004177 - aminopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA,IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12134085]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps70p complement(465594..468080) Sugiyamaella lignohabitans 30036930 AWJ20_4764 CDS slx4 NC_031673.1 468452 471052 R structure-specific endonuclease subunit complement(468452..471052) Sugiyamaella lignohabitans 30036931 AWJ20_4765 CDS CPR1 NC_031673.1 471658 472089 R Cytoplasmic peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds the drug cyclosporin A; N-terminally propionylated in vivo; protein abundance increases in response to DNA replication stress; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000118 - histone deacetylase complex [Evidence IPI] [PMID 15643056]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15643056]; GO_function: GO:0016018 - cyclosporin A binding [Evidence IMP] [PMID 7515500]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0042277 - peptide binding [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 2687115]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 15643056]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IMP] [PMID 11641409]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IMP] [PMID 12242280]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0045836 - positive regulation of meiosis [Evidence IGI,IMP] [PMID 15643056]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; peptidylprolyl isomerase CPR1 complement(471658..472089) Sugiyamaella lignohabitans 30036932 AWJ20_4766 CDS ENT3 NC_031673.1 477114 478451 D Protein containing an N-terminal epsin-like domain; involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence TAS] [PMID 10652251]; GO_component: GO:0030125 - clathrin vesicle coat [Evidence IDA] [PMID 12483220]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12967568]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IDA] [PMID 12967568]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA] [PMID 14630930]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 14630930]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 12483220]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IMP] [PMID 12483220]; GO_process: GO:0000147 - actin cortical patch assembly [Evidence ISS] [PMID 10449404]; GO_process: GO:0030036 - actin cytoskeleton organization [Evidence IMP] [PMID 12967568]; GO_process: GO:0007015 - actin filament organization [Evidence ISS] [PMID 10449404]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IGI] [PMID 20658963]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IMP] [PMID 15107463]; GO_process: GO:0071985 - multivesicular body sorting pathway [Evidence IMP] [PMID 12967568]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ent3p 477114..478451 Sugiyamaella lignohabitans 30036933 AWJ20_4767 CDS GIR2 NC_031673.1 478679 479569 R Highly-acidic RWD domain-containing hypothetical protein; cytoplasmic; forms a complex with Rbg2p; interacts with Rbg1p and Gcn1p; associates with translating ribosomes; putative intrinsically unstructured protein; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 19448108]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI] [PMID 21076151]; Gir2p complement(join(478679..479334,479500..479569)) Sugiyamaella lignohabitans 30036934 AWJ20_4768 CDS MIF2 NC_031673.1 480189 482804 D Muscle M-line assembly protein unc-89 480189..482804 Sugiyamaella lignohabitans 30036935 AWJ20_4769 CDS MCM4 NC_031673.1 483229 485949 D Essential helicase component of heterohexameric MCM2-7 complexes; MCM2-7 complexes bind pre-replication complexes on DNA and melt DNA prior to replication; forms an Mcm4p-6p-7p subcomplex; shows nuclear accumulation in G1; homolog of S. pombe Cdc21p; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IDA] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0097373 - MCM core complex [Evidence IDA] [PMID 13679365]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10559985]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10704410]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0043596 - nuclear replication fork [Evidence IDA] [PMID 16103218]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10559985]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704410]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IDA] [PMID 15723534]; GO_function: GO:1990163 - ATP-dependent four-way junction helicase activity [Evidence IDA] [PMID 13679365]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IMP] [PMID 17895243]; GO_function: GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0043142 - single-stranded DNA-dependent ATPase activity [Evidence IDA] [PMID 15723534]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI] [PMID 2044962]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 13679365]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 15723534]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 2044962]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IPI] [PMID 9335335]; MCM DNA helicase complex subunit MCM4 483229..485949 Sugiyamaella lignohabitans 30036936 AWJ20_4770 CDS SLS1 NC_031673.1 486060 488579 R Mitochondrial membrane protein; coordinates expression of mitochondrially-encoded genes; may facilitate delivery of mRNA to membrane-bound translation machinery; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 8917313]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 8917313]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 12637560]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8917313]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 12637560]; GO_process: GO:0006412 - translation [Evidence IEA]; Sls1p complement(486060..488579) Sugiyamaella lignohabitans 30036938 AWJ20_4771 CDS rrn5 NC_031673.1 488843 490696 D RNA polymerase I upstream activation factor complex subunit Rrn5 488843..490696 Sugiyamaella lignohabitans 30036939 AWJ20_4772 CDS CRH1 NC_031673.1 492519 494135 D Chitin transglycosylase; functions in the transfer of chitin to beta(1-6) and beta(1-3) glucans in the cell wall; similar and functionally redundant to Utr2; localizes to sites of polarized growth; expression induced by cell wall stress; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 10757808]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 15781460]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 10757808]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA,IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IGI,IMP] [PMID 18694928]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IDA] [PMID 23919454]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0006037 - cell wall chitin metabolic process [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0071555 - cell wall organization [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IGI,IMP] [PMID 18694928]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Crh1p 492519..494135 Sugiyamaella lignohabitans 30036940 AWJ20_4773 CDS AWJ20_4773 NC_031673.1 494344 495246 R uncharacterized protein complement(494344..495246) Sugiyamaella lignohabitans 30036941 AWJ20_4774 CDS ASH1 NC_031673.1 496087 497916 R DNA-binding transcription repressor ASH1 complement(496087..497916) Sugiyamaella lignohabitans 30036942 AWJ20_4775 CDS AWJ20_4775 NC_031673.1 501045 501920 D uncharacterized protein 501045..501920 Sugiyamaella lignohabitans 30036943 AWJ20_4776 CDS SGN1 NC_031673.1 502142 502729 R Cytoplasmic RNA-binding protein; contains an RNA recognition motif (RRM); may have a role in mRNA translation, as suggested by genetic interactions with genes encoding proteins involved in translational initiation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10764794]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA] [PMID 10764794]; GO_process: GO:0016071 - mRNA metabolic process [Evidence IGI] [PMID 10764794]; Sgn1p complement(502142..502729) Sugiyamaella lignohabitans 30036944 AWJ20_4777 CDS AWJ20_4777 NC_031673.1 505064 505726 D uncharacterized protein 505064..505726 Sugiyamaella lignohabitans 30036945 AWJ20_4778 CDS RSM22 NC_031673.1 506179 508368 R Mitochondrial ribosomal protein of the small subunit; also predicted to be an S-adenosylmethionine-dependent methyltransferase; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 11278769]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISM] [PMID 19351663]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 11278769]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 11278769]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein RSM22 complement(506179..508368) Sugiyamaella lignohabitans 30036946 AWJ20_4779 CDS FSH3 NC_031673.1 508852 509604 D Putative serine hydrolase; likely target of Cyc8p-Tup1p-Rfx1p transcriptional regulation; sequence is similar to S. cerevisiae Fsh1p and Fsh2p and the human candidate tumor suppressor OVCA2; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Fsh3p 508852..509604 Sugiyamaella lignohabitans 30036947 AWJ20_4780 CDS KEL1 NC_031673.1 511059 514622 R Protein required for proper cell fusion and cell morphology; functions in a complex with Kel2p to negatively regulate mitotic exit, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate; KEL1 has a paralog, KEL2, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 23673619]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 9786949]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 9786949]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 9786949]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000755 - cytogamy [Evidence IGI,IMP,IPI] [PMID 9786949]; GO_process: GO:0001100 - negative regulation of exit from mitosis [Evidence IMP,IPI] [PMID 12234925]; GO_process: GO:0008360 - regulation of cell shape [Evidence IMP] [PMID 9786949]; Kel1p complement(511059..514622) Sugiyamaella lignohabitans 30036949 AWJ20_4781 CDS AWJ20_4781 NC_031673.1 514937 515938 R uncharacterized protein complement(514937..515938) Sugiyamaella lignohabitans 30036950 AWJ20_4782 CDS SFP1 NC_031673.1 521591 522196 R zinc-coordinating transcription factor SFP1 complement(521591..522196) Sugiyamaella lignohabitans 30036951 AWJ20_4783 CDS ADP1 NC_031673.1 529692 532442 R Putative ATP-dependent permease of the ABC transporter family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence ISS] [PMID 9020838]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence ISS] [PMID 9020838]; GO_process: GO:0006810 - transport [Evidence IEA]; putative ATP-dependent permease ADP1 complement(529692..532442) Sugiyamaella lignohabitans 30036952 AWJ20_4784 CDS AWJ20_4784 NC_031673.1 536380 537141 R uncharacterized protein complement(536380..537141) Sugiyamaella lignohabitans 30036953 AWJ20_4785 CDS AWJ20_4785 NC_031673.1 537264 537707 R uncharacterized protein complement(537264..537707) Sugiyamaella lignohabitans 30036954 AWJ20_4786 CDS AWJ20_4786 NC_031673.1 538006 539226 R uncharacterized protein complement(538006..539226) Sugiyamaella lignohabitans 30036955 AWJ20_4787 CDS SWA2 NC_031673.1 548268 551057 D Auxilin-like protein involved in vesicular transport; clathrin-binding protein required for uncoating of clathrin-coated vesicles; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 11553703]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0030276 - clathrin binding [Evidence IDA] [PMID 16687570]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 18948116]; GO_process: GO:0072318 - clathrin coat disassembly [Evidence IMP] [PMID 11146663]; GO_process: GO:0048309 - endoplasmic reticulum inheritance [Evidence IMP] [PMID 11553703]; GO_process: GO:0032781 - positive regulation of ATPase activity [Evidence IDA] [PMID 16687570]; Swa2p 548268..551057 Sugiyamaella lignohabitans 30036956 AWJ20_4788 CDS TFB1 NC_031673.1 551288 553303 R Subunit of TFIIH and nucleotide excision repair factor 3 complexes; required for nucleotide excision repair, target for transcriptional activators; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0000439 - core TFIIH complex [Evidence IEA]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 14500720]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IDA] [PMID 8855246]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 15909982]; GO_function: GO:0010314 - phosphatidylinositol-5-phosphate binding [Evidence IDA] [PMID 15909982]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 7891722]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IMP] [PMID 12015980]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; TFIIH/NER complex subunit TFB1 complement(551288..553303) Sugiyamaella lignohabitans 30036957 AWJ20_4789 CDS SSZ1 NC_031673.1 553633 555303 D Hsp70 protein that interacts with Zuo1p (a DnaJ homolog); interacts with Zuo1p to form a ribosome-associated complex that binds the ribosome via the Zuo1p subunit; also involved in pleiotropic drug resistance via sequential activation of PDR1 and PDR5; binds ATP; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10792726]; GO_component: GO:0005844 - polysome [Evidence IDA] [PMID 16413483]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IGI,IPI] [PMID 11054575]; GO_function: GO:0051082 - unfolded protein binding [Evidence ISS] [PMID 9488429]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI,IPI] [PMID 11054575]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI,IMP] [PMID 11929994]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 20368619]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IMP] [PMID 15456889]; GO_process: GO:0006452 - translational frameshifting [Evidence IMP] [PMID 16607023]; Ssz1p 553633..555303 Sugiyamaella lignohabitans 30036958 AWJ20_4790 CDS PXA1 NC_031673.1 555554 558037 R Subunit of a heterodimeric peroxisomal ABC transport complex; required for import of long-chain fatty acids into peroxisomes; similarity to human adrenoleukodystrophy transporter ABCD1 and ABCD2 and ALD-related proteins; mutations in ABCD1 cause X-linked adrenoleukodystrophy (X-ALD), a peroxisomal disorder; complex also includes Pxa2p; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005779 - integral component of peroxisomal membrane [Evidence IDA] [PMID 8670886]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IMP,ISS] [PMID 8670886]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0015908 - fatty acid transport [Evidence IMP] [PMID 8670886]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette long-chain fatty acid transporter PXA1 complement(555554..558037) Sugiyamaella lignohabitans 30036960 AWJ20_4792 CDS KCH1 NC_031673.1 558873 561473 R Potassium transporter that mediates K+ influx; activates high-affinity Ca2+ influx system (HACS) during mating pheromone response; expression up-regulated in response to alpha factor; localized to sites of polarized growth; member of a fungal-specific gene family; potential Cdc28p substrate; KCH1 has a paralog, PRM6, that arose from the whole genome duplication; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 23204190]; GO_component: GO:0005937 - mating projection [Evidence IDA] [PMID 23204190]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015079 - potassium ion transmembrane transporter activity [Evidence IDA] [PMID 23204190]; GO_process: GO:0071805 - potassium ion transmembrane transport [Evidence IDA] [PMID 23204190]; Kch1p complement(558873..561473) Sugiyamaella lignohabitans 30036962 AWJ20_4793 CDS PMT4 NC_031673.1 565732 567987 D Protein O-mannosyltransferase; transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues; appears to form homodimers in vivo and does not complex with other Pmt proteins; target for new antifungals; GO_component: GO:0097586 - dolichyl-phosphate-mannose-protein mannosyltransferase Pmt4p homodimer complex [Evidence IPI] [PMID 12551906]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IEA]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IDA,IMP] [PMID 21956107]; GO_function: GO:0004169 - dolichyl-phosphate-mannose-protein mannosyltransferase activity [Evidence IMP,ISS] [PMID 8585318]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IEA]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IMP,ISS] [PMID 8585318]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IMP] [PMID 18182384]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IMP] [PMID 21231968]; GO_process: GO:1900101 - regulation of endoplasmic reticulum unfolded protein response [Evidence IGI] [PMID 21231968]; Pmt4p 565732..567987 Sugiyamaella lignohabitans 30036963 AWJ20_4794 CDS TFB3 NC_031673.1 569415 570353 D Subunit of TFIIH and nucleotide excision repair factor 3 complexes; involved in transcription initiation, required for nucleotide excision repair; ring finger protein similar to mammalian CAK and TFIIH subunit; GO_component: GO:0070985 - TFIIK complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 10681587]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; TFIIH/NER complex subunit TFB3 569415..570353 Sugiyamaella lignohabitans 30036964 AWJ20_4795 CDS RCR2 NC_031673.1 571975 572736 D Vacuolar protein; presumably functions within the endosomal-vacuolar trafficking pathway, affecting events that determine whether plasma membrane proteins are degraded or routed to the plasma membrane; RCR2 has a paralog, RCR1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 17287526]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 15590673]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031982 - vesicle [Evidence IDA] [PMID 17287526]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 17287526]; Rcr2p 571975..572736 Sugiyamaella lignohabitans 30036965 AWJ20_4796 CDS FOL2 NC_031673.1 573354 574247 R GTP-cyclohydrolase I; catalyzes the first step in the folic acid biosynthetic pathway; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA,IEA]; GO_function: GO:0003934 - GTP cyclohydrolase I activity [Evidence IMP] [PMID 8573145]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0035998 - 7,8-dihydroneopterin 3'-triphosphate biosynthetic process [Evidence IEA]; GO_process: GO:0046656 - folic acid biosynthetic process [Evidence IEA]; GO_process: GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IMP] [PMID 8573145]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]; GTP cyclohydrolase I complement(573354..574247) Sugiyamaella lignohabitans 30036966 AWJ20_4797 CDS HUA1 NC_031673.1 577671 578729 R Cytoplasmic protein containing a zinc finger domain; sequence similarity to that of Type I J-proteins; computational analysis of large-scale protein-protein interaction data suggests a possible role in actin patch assembly; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11489916]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Hua1p complement(577671..578729) Sugiyamaella lignohabitans 30036967 AWJ20_4799 CDS AWJ20_4799 NC_031673.1 586370 587032 R uncharacterized protein complement(586370..587032) Sugiyamaella lignohabitans 30036969 AWJ20_4802 CDS UGA1 NC_031673.1 595567 597051 R Gamma-aminobutyrate (GABA) transaminase; also known as 4-aminobutyrate aminotransferase; involved in the 4-aminobutyrate and glutamate degradation pathways; required for normal oxidative stress tolerance and nitrogen utilization; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 23740823]; GO_function: GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IEA,IEA]; GO_function: GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IMP] [PMID 3888627]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IMP] [PMID 3888627]; GO_process: GO:0009448 - gamma-aminobutyric acid metabolic process [Evidence IEA]; 4-aminobutyrate transaminase complement(595567..597051) Sugiyamaella lignohabitans 30036974 AWJ20_4803 CDS SET2 NC_031673.1 598643 601018 R histone methyltransferase SET2 complement(598643..601018) Sugiyamaella lignohabitans 30036975 AWJ20_4804 CDS AWJ20_4804 NC_031673.1 601398 602336 R uncharacterized protein complement(601398..602336) Sugiyamaella lignohabitans 30036976 AWJ20_4805 CDS ARC1 NC_031673.1 604056 604766 R Protein that binds tRNA and methionyl- and glutamyl-tRNA synthetases; involved in tRNA delivery, stimulating catalysis, and ensuring localization; also binds quadruplex nucleic acids; protein abundance increases in response to DNA replication stress; methionyl-tRNA synthetase is Mes1p; glutamyl-tRNA synthetase is Gus1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11726524]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15710377]; GO_component: GO:0017102 - methionyl glutamyl tRNA synthetase complex [Evidence IMP,IPI] [PMID 9659920]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008047 - enzyme activator activity [Evidence IDA] [PMID 11069915]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0000049 - tRNA binding [Evidence IEA,IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IMP,IPI] [PMID 11726524]; GO_process: GO:0051351 - positive regulation of ligase activity [Evidence IDA] [PMID 11069915]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IMP] [PMID 9659920]; Arc1p complement(604056..604766) Sugiyamaella lignohabitans 30036977 AWJ20_4806 CDS AWJ20_4806 NC_031673.1 605389 608388 D uncharacterized protein 605389..608388 Sugiyamaella lignohabitans 30036978 AWJ20_4807 CDS TFB4 NC_031673.1 608637 609689 R Subunit of TFIIH complex; involved in transcription initiation, similar to 34 kDa subunit of human TFIIH; interacts with Ssl1p; GO_component: GO:0000439 - core TFIIH complex [Evidence IEA]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 14500720]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IPI] [PMID 10681587]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 10506223]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; TFIIH/NER complex subunit TFB4 complement(608637..609689) Sugiyamaella lignohabitans 30036979 AWJ20_4808 CDS MRPL37 NC_031673.1 610680 611036 R Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 2060626]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 2060626]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 2060626]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; mitochondrial 54S ribosomal protein YmL37 complement(610680..611036) Sugiyamaella lignohabitans 30036980 AWJ20_4809 CDS LAS21 NC_031673.1 614858 617515 D Integral plasma membrane protein; involved in the synthesis of the glycosylphosphatidylinositol (GPI) core structure; mutations affect cell wall integrity; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 10329735]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10329735]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051377 - mannose-ethanolamine phosphotransferase activity [Evidence IMP] [PMID 15452134]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IMP] [PMID 10329735]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 10329735]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 15452134]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Las21p 614858..617515 Sugiyamaella lignohabitans 30036981 AWJ20_4810 CDS TAF5 NC_031673.1 619169 620080 D Subunit (90 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 11585915]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf5p 619169..620080 Sugiyamaella lignohabitans 30036983 AWJ20_4811 CDS MRP20 NC_031673.1 620369 621115 D Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 1544898]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 1544898]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 1544898]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL41 620369..621115 Sugiyamaella lignohabitans 30036984 AWJ20_4812 CDS AWJ20_4812 NC_031673.1 621264 625349 R uncharacterized protein complement(join(621264..624717,625288..625349)) Sugiyamaella lignohabitans 30036985 AWJ20_4813 CDS AWJ20_4813 NC_031673.1 625102 626079 D uncharacterized protein 625102..626079 Sugiyamaella lignohabitans 30036986 AWJ20_4814 CDS KTR4 NC_031673.1 627019 628272 D Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family of type II membrane proteins with a short cytoplasmic N-terminus, a membrane-spanning region and a highly conserved catalytic lumenal domain; GO_component: GO:0005794 - Golgi apparatus [Evidence ISS] [PMID 7975899]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO_function: GO:0000030 - mannosyltransferase activity [Evidence ISS] [PMID 7975899]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0097502 - mannosylation [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence ISS] [PMID 7975899]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; Ktr4p 627019..628272 Sugiyamaella lignohabitans 30036987 AWJ20_4815 CDS AIP1 NC_031673.1 628441 629946 R Actin cortical patch component; interacts with the actin depolymerizing factor cofilin; inhibits elongation of aged ADP-actin filaments decorated with cofilin to maintain a high level of assembly-competent actin species; required to restrict cofilin localization to cortical patches; contains WD repeats; protein increases in abundance and relocalizes from cytoplasm to plasma membrane upon DNA replication stress; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10366597]; GO_component: GO:0005884 - actin filament [Evidence IDA] [PMID 23333351]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0003779 - actin binding [Evidence IPI] [PMID 7719850]; GO_process: GO:0030042 - actin filament depolymerization [Evidence IGI,IPI] [PMID 10366597]; GO_process: GO:0051016 - barbed-end actin filament capping [Evidence IMP] [PMID 23333351]; GO_process: GO:0006970 - response to osmotic stress [Evidence TAS] [PMID 10652251]; Aip1p complement(628441..629946) Sugiyamaella lignohabitans 30036988 AWJ20_4816 CDS DAL5 NC_031673.1 634464 634883 R Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]; allantoate permease complement(634464..634883) Sugiyamaella lignohabitans 30036989 AWJ20_4817 CDS DAL5 NC_031673.1 634933 636057 R Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]; allantoate permease complement(634933..636057) Sugiyamaella lignohabitans 30036990 AWJ20_4818 CDS DAL5 NC_031673.1 637482 638501 R Allantoate permease; ureidosuccinate permease; also transports dipeptides, though with lower affinity than for allantoate and ureidosuccinate; expression is constitutive but sensitive to nitrogen catabolite repression; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0015124 - allantoate transmembrane transporter activity [Evidence IMP,ISS] [PMID 3275614]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IMP] [PMID 16429164]; GO_function: GO:0042936 - dipeptide transporter activity [Evidence IGI,IMP] [PMID 17693598]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015719 - allantoate transport [Evidence IMP] [PMID 3275614]; GO_process: GO:0042938 - dipeptide transport [Evidence IMP] [PMID 16429164]; GO_process: GO:0042938 - dipeptide transport [Evidence IGI,IMP] [PMID 17693598]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; GO_process: GO:0042939 - tripeptide transport [Evidence IMP] [PMID 16429164]; allantoate permease complement(637482..638501) Sugiyamaella lignohabitans 30036991 AWJ20_4819 CDS UTP15 NC_031673.1 641504 642994 D Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0033553 - rDNA heterochromatin [Evidence IDA] [PMID 15489292]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_component: GO:0034455 - t-UTP complex [Evidence IDA] [PMID 17515605]; GO_function: GO:0030515 - snoRNA binding [Evidence IPI] [PMID 12068309]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12068309]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Utp15p 641504..642994 Sugiyamaella lignohabitans 30036992 AWJ20_4820 CDS AWJ20_4820 NC_031673.1 643490 644761 R uncharacterized protein complement(643490..644761) Sugiyamaella lignohabitans 30036994 AWJ20_4821 CDS ATP25 NC_031673.1 645086 647341 D Mitochondrial protein required for the stability of Oli1p (Atp9p) mRNA; also required for the Oli1p ring formation; YMR098C is not an essential gene; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 18216280]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0048255 - mRNA stabilization [Evidence IEA]; GO_process: GO:0048255 - mRNA stabilization [Evidence IMP] [PMID 18216280]; GO_process: GO:0033615 - mitochondrial proton-transporting ATP synthase complex assembly [Evidence IMP] [PMID 18216280]; Atp25p 645086..647341 Sugiyamaella lignohabitans 30036995 AWJ20_4822 CDS AWJ20_4822 NC_031673.1 648028 648597 D uncharacterized protein 648028..648597 Sugiyamaella lignohabitans 30036996 AWJ20_4823 CDS KTI12 NC_031673.1 648892 649743 R Protein that plays a role in modification of tRNA wobble nucleosides; protein plays role in tRNA wobble nucleoside modification with Elongator complex; involved in sensitivity to G1 arrest induced by zymocin; interacts with chromatin throughout the genome; also interacts with Cdc19p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 12139626]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12139626]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 15772087]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0016049 - cell growth [Evidence IPI] [PMID 12139626]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 15772087]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IMP] [PMID 18755837]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Kti12p complement(648892..649743) Sugiyamaella lignohabitans 30036997 AWJ20_4824 CDS MTG1 NC_031673.1 650295 651395 D Putative GTPase peripheral to the mitochondrial inner membrane; essential for respiratory competence, likely functions in assembly of the large ribosomal subunit, has homologs in plants and animals; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 12808030]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence ISA] [PMID 12808030]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IGI,IMP] [PMID 12808030]; putative GTPase MTG1 650295..651395 Sugiyamaella lignohabitans 30036998 AWJ20_4825 CDS POM33 NC_031673.1 654564 654869 D nucleoporin POM33 654564..654869 Sugiyamaella lignohabitans 30036999 AWJ20_4826 CDS ADI1 NC_031673.1 655610 656128 D Acireductone dioxygenease involved in the methionine salvage pathway; ortholog of human MTCBP-1; transcribed as polycistronic mRNA with YMR010W and regulated post-transcriptionally by RNase III (Rnt1p) cleavage; ADI1 mRNA is induced in heat shock conditions; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0010308 - acireductone dioxygenase (Ni2+-requiring) activity [Evidence IMP] [PMID 15938715]; GO_function: GO:0010309 - acireductone dioxygenase [iron(II)-requiring] activity [Evidence IEA,IEA,IEA]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA,IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IGI,IMP,ISS] [PMID 15938715]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 18625006]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; acireductone dioxygenase (Ni2+-requiring) 655610..656128 Sugiyamaella lignohabitans 30037000 AWJ20_4827 CDS VPS53 NC_031673.1 663078 665963 D Component of the GARP (Golgi-associated retrograde protein) complex; GARP is required for the recycling of proteins from endosomes to the late Golgi, and for mitosis after DNA damage induced checkpoint arrest; required for vacuolar protein sorting; members of the GARP complex are Vps51p-Vps52p-Vps53p-Vps54p; GO_component: GO:0000938 - GARP complex [Evidence IPI] [PMID 10637310]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 10637310]; GO_component: GO:0005794 - Golgi apparatus [Evidence TAS] [PMID 11689439]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 10637310]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IDA] [PMID 12686613]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps53p 663078..665963 Sugiyamaella lignohabitans 30037001 AWJ20_4828 CDS PML1 NC_031673.1 666271 667101 R Subunit of the RES complex; RES complex is required for nuclear retention of unspliced pre-mRNAs; acts in the same pathway as Pml39p and Mlp1p; GO_component: GO:0070274 - RES complex [Evidence IDA] [PMID 15565172]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IMP] [PMID 15565172]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 15565172]; GO_process: GO:0051237 - maintenance of RNA location [Evidence IMP] [PMID 16162818]; Pml1p complement(666271..667101) Sugiyamaella lignohabitans 30037002 AWJ20_4829 CDS HCA4 NC_031673.1 667803 670199 D DEAD box RNA helicase; high-copy number suppression of a U14 snoRNA processing mutant suggests an involvement in 18S rRNA synthesis; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IC] [PMID 16209945]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IMP] [PMID 16209945]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 18975973]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 23153376]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 16209945]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; RNA-dependent ATPase HCA4 667803..670199 Sugiyamaella lignohabitans 30037003 AWJ20_4830 CDS TPP1 NC_031673.1 671459 672370 D DNA 3'-phosphatase; functions in repair of endogenous damage of double-stranded DNA, activity is specific for removal of 3' phosphates at strand breaks; similar to the l-2-haloacid dehalogenase superfamily; homolog of human polynucleotide kinase/3'-phosphatase; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 11278831]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 15222769]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 15222769]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046403 - polynucleotide 3'-phosphatase activity [Evidence IEA]; GO_function: GO:0046403 - polynucleotide 3'-phosphatase activity [Evidence IDA] [PMID 11278831]; GO_function: GO:0046403 - polynucleotide 3'-phosphatase activity [Evidence IMP] [PMID 15222769]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IGI,IMP] [PMID 11585902]; GO_process: GO:0098506 - polynucleotide 3' dephosphorylation [Evidence IEA]; Tpp1p 671459..672370 Sugiyamaella lignohabitans 30037005 AWJ20_4831 CDS RPL9B NC_031673.1 672801 673370 R Ribosomal 60S subunit protein L9B; homologous to mammalian ribosomal protein L9 and bacterial L6; RPL9B has a paralog, RPL9A, that arose from a single-locus duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IDA] [PMID 18782943]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L9B complement(672801..673370) Sugiyamaella lignohabitans 30037006 AWJ20_4832 CDS AWJ20_4832 NC_031673.1 673083 673424 D uncharacterized protein 673083..673424 Sugiyamaella lignohabitans 30037007 AWJ20_4833 CDS AWJ20_4833 NC_031673.1 674426 675199 D uncharacterized protein 674426..675199 Sugiyamaella lignohabitans 30037008 AWJ20_4834 CDS AWJ20_4834 NC_031673.1 675471 677702 R uncharacterized protein complement(675471..677702) Sugiyamaella lignohabitans 30037009 AWJ20_4835 CDS GET3 NC_031673.1 682334 683296 D Guanine nucleotide exchange factor for Gpa1p; amplifies G protein signaling; subunit of the GET complex, which is involved in Golgi to ER trafficking and insertion of proteins into the ER membrane; has low-level ATPase activity; protein abundance increases in response to DNA replication stress; GO_component: GO:0043529 - GET complex [Evidence IEA]; GO_component: GO:0043529 - GET complex [Evidence IPI] [PMID 16269340]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 12680698]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 18261907]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0000750 - pheromone-dependent signal transduction involved in conjugation with cellular fusion [Evidence IMP] [PMID 18261907]; GO_process: GO:0006620 - posttranslational protein targeting to membrane [Evidence IDA] [PMID 20850366]; GO_process: GO:0045048 - protein insertion into ER membrane [Evidence IEA]; GO_process: GO:0045048 - protein insertion into ER membrane [Evidence IMP] [PMID 18724936]; GO_process: GO:0046685 - response to arsenic-containing substance [Evidence IEA]; GO_process: GO:0009408 - response to heat [Evidence IMP] [PMID 12680698]; GO_process: GO:0010038 - response to metal ion [Evidence IMP] [PMID 12680698]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IDA,IGI,IMP] [PMID 16269340]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; guanine nucleotide exchange factor GET3 682334..683296 Sugiyamaella lignohabitans 30037010 AWJ20_4836 CDS AWJ20_4836 NC_031673.1 683565 685508 R uncharacterized protein complement(683565..685508) Sugiyamaella lignohabitans 30037011 AWJ20_4837 CDS VPS35 NC_031673.1 686796 688427 R Endosomal subunit of membrane-associated retromer complex; required for retrograde transport; receptor that recognizes retrieval signals on cargo proteins, forms subcomplex with Vps26p and Vps29p that selects cargo proteins for retrieval; interacts with Ypt7p; GO_component: GO:0005768 - endosome [Evidence IPI] [PMID 9700157]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22593205]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0030904 - retromer complex [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IPI] [PMID 9700157]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps35p complement(686796..688427) Sugiyamaella lignohabitans 30037012 AWJ20_4838 CDS VPS35 NC_031673.1 688514 689552 R Endosomal subunit of membrane-associated retromer complex; required for retrograde transport; receptor that recognizes retrieval signals on cargo proteins, forms subcomplex with Vps26p and Vps29p that selects cargo proteins for retrieval; interacts with Ypt7p; GO_component: GO:0005768 - endosome [Evidence IPI] [PMID 9700157]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22593205]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0030904 - retromer complex [Evidence IEA]; GO_component: GO:0030904 - retromer complex [Evidence IMP,IPI] [PMID 9700157]; GO_component: GO:0030906 - retromer complex, inner shell [Evidence IPI] [PMID 9700157]; GO_function: GO:0008565 - protein transporter activity [Evidence IMP,IPI] [PMID 9700157]; GO_process: GO:0045053 - protein retention in Golgi apparatus [Evidence IMP] [PMID 8649377]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IEA]; GO_process: GO:0042147 - retrograde transport, endosome to Golgi [Evidence IPI] [PMID 9700157]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps35p complement(join(688514..688525,688614..689552)) Sugiyamaella lignohabitans 30037013 AWJ20_4839 CDS AWJ20_4839 NC_031673.1 692048 694123 R uncharacterized protein complement(692048..694123) Sugiyamaella lignohabitans 30037014 AWJ20_4840 CDS TMA64 NC_031673.1 694829 696511 D hypothetical protein that associates with ribosomes; has a putative RNA binding domain; in mammals the corresponding protein, eIF2D, has been shown to possess translation initiation factor activity; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence ISS] [PMID 10093218]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; Tma64p 694829..696511 Sugiyamaella lignohabitans 30037016 AWJ20_4841 CDS GPI17 NC_031673.1 696676 698139 R Transmembrane protein; subunit of the glycosylphosphatidylinositol transamidase complex that adds GPIs to newly synthesized proteins; human PIG-S homolog; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IEA]; GO_component: GO:0042765 - GPI-anchor transamidase complex [Evidence IDA] [PMID 15939668]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15075373]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IDA] [PMID 15939668]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0003923 - GPI-anchor transamidase activity [Evidence IMP,ISS] [PMID 11483512]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IEA]; GO_process: GO:0016255 - attachment of GPI anchor to protein [Evidence IMP,ISS] [PMID 11483512]; Gpi17p complement(696676..698139) Sugiyamaella lignohabitans 30037017 AWJ20_4842 CDS MRPL1 NC_031673.1 698456 699388 D Mitochondrial ribosomal protein of the large subunit; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein MRPL1 698456..699388 Sugiyamaella lignohabitans 30037018 AWJ20_4843 CDS AWJ20_4843 NC_031673.1 703912 704730 D uncharacterized protein 703912..704730 Sugiyamaella lignohabitans 30037019 AWJ20_4844 CDS PGM2 NC_031673.1 705691 707355 D Phosphoglucomutase; catalyzes the conversion from glucose-1-phosphate to glucose-6-phosphate, which is a key step in hexose metabolism; functions as the acceptor for a Glc-phosphotransferase; protein abundance increases in response to DNA replication stress; PGM2 has a paralog, PGM1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8385141]; GO_component: GO:0005829 - cytosol [Evidence IBA]; GO_function: GO:0016868 - intramolecular transferase activity, phosphotransferases [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IEA]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IMP] [PMID 13887540]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IMP] [PMID 2138705]; GO_function: GO:0004614 - phosphoglucomutase activity [Evidence IGI,IMP,ISS] [PMID 8119301]; GO_process: GO:0006011 - UDP-glucose metabolic process [Evidence IGI] [PMID 9252577]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA,IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IMP] [PMID 10681519]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IGI,IMP] [PMID 15252028]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IMP] [PMID 15164360]; GO_process: GO:0019388 - galactose catabolic process [Evidence IMP] [PMID 13887540]; GO_process: GO:0019388 - galactose catabolic process [Evidence IMP] [PMID 14264884]; GO_process: GO:0019388 - galactose catabolic process [Evidence IGI,IMP] [PMID 8119301]; GO_process: GO:0019255 - glucose 1-phosphate metabolic process [Evidence IMP] [PMID 10681519]; GO_process: GO:0019255 - glucose 1-phosphate metabolic process [Evidence IGI,IMP,ISS] [PMID 8119301]; GO_process: GO:0051156 - glucose 6-phosphate metabolic process [Evidence ISS] [PMID 8119301]; GO_process: GO:0006006 - glucose metabolic process [Evidence IEA]; GO_process: GO:0005978 - glycogen biosynthetic process [Evidence IGI] [PMID 9252577]; GO_process: GO:0005992 - trehalose biosynthetic process [Evidence IGI] [PMID 9252577]; phosphoglucomutase PGM2 705691..707355 Sugiyamaella lignohabitans 30037020 AWJ20_4845 CDS YKU80 NC_031673.1 707575 709068 R Subunit of the telomeric Ku complex (Yku70p-Yku80p); involved in telomere length maintenance, structure and telomere position effect; required for localization of telomerase ribonucleoprotein via interaction with the TLC1 guide RNA; relocates to sites of double-strand cleavage to promote nonhomologous end joining during DSB repair; GO_component: GO:0043564 - Ku70:Ku80 complex [Evidence IEA]; GO_component: GO:0043564 - Ku70:Ku80 complex [Evidence IDA] [PMID 8754818]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0000790 - nuclear chromatin [Evidence TAS] [PMID 10367891]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence TAS] [PMID 12080091]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 16166630]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 12975323]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence TAS] [PMID 10367891]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IEA]; GO_function: GO:0042162 - telomeric DNA binding [Evidence IDA] [PMID 17656141]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006333 - chromatin assembly or disassembly [Evidence IDA] [PMID 11553718]; GO_process: GO:0006342 - chromatin silencing [Evidence IDA,IMP] [PMID 9501103]; GO_process: GO:0007535 - donor selection [Evidence IDA,IMP] [PMID 16166630]; GO_process: GO:0007535 - donor selection [Evidence IGI,IMP] [PMID 16809780]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 11016833]; GO_process: GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]; GO_process: GO:0034502 - protein localization to chromosome [Evidence IGI] [PMID 18716325]; GO_process: GO:0000723 - telomere maintenance [Evidence IEA]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 10818099]; Yku80p complement(707575..709068) Sugiyamaella lignohabitans 30037021 AWJ20_4846 CDS GAL7 NC_031673.1 709547 711244 R Galactose-1-phosphate uridyl transferase; synthesizes glucose-1-phosphate and UDP-galactose from UDP-D-glucose and alpha-D-galactose-1-phosphate in the second step of galactose catabolism; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10993714]; GO_function: GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IMP] [PMID 14158615]; GO_function: GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IDA] [PMID 387754]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IMP] [PMID 14158615]; GO_process: GO:0033499 - galactose catabolic process via UDP-galactose [Evidence IDA] [PMID 387754]; GO_process: GO:0006012 - galactose metabolic process [Evidence IEA,IEA,IEA]; UDP-glucose:hexose-1-phosphate uridylyltransferase complement(join(709547..709550,709779..709792,710159..711244)) Sugiyamaella lignohabitans 30037022 AWJ20_4847 CDS SLD5 NC_031673.1 711932 712681 R Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IGI,IMP] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12730134]; GO_component: GO:0000811 - GINS complex [Evidence IPI] [PMID 12768207]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12730134]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IMP] [PMID 12768207]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; Sld5p complement(711932..712681) Sugiyamaella lignohabitans 30037023 AWJ20_4848 CDS AWJ20_4848 NC_031673.1 713518 715242 D uncharacterized protein 713518..715242 Sugiyamaella lignohabitans 30037024 AWJ20_4849 CDS AWJ20_4849 NC_031673.1 715649 717979 R uncharacterized protein complement(715649..717979) Sugiyamaella lignohabitans 30037025 AWJ20_4850 CDS MUM2 NC_031673.1 719318 720154 D Protein essential for meiotic DNA replication and sporulation; cytoplasmic protein; subunit of the MIS complex which controls mRNA methylation during during the induction of sporulation; also interacts with Orc2p, which is a component of the origin recognition complex; GO_component: GO:0036396 - MIS complex [Evidence IDA,IPI] [PMID 22685417]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 22685417]; GO_process: GO:0080009 - mRNA methylation [Evidence IGI,IMP] [PMID 22685417]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IMP] [PMID 22685417]; GO_process: GO:2000221 - negative regulation of pseudohyphal growth [Evidence IMP] [PMID 22685417]; GO_process: GO:0006279 - premeiotic DNA replication [Evidence IGI] [PMID 11238403]; GO_process: GO:0006279 - premeiotic DNA replication [Evidence IMP] [PMID 9504908]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Mum2p 719318..720154 Sugiyamaella lignohabitans 30037027 AWJ20_4851 CDS AWJ20_4851 NC_031673.1 720467 722287 R uncharacterized protein complement(720467..722287) Sugiyamaella lignohabitans 30037028 AWJ20_4852 CDS ARO3 NC_031673.1 722631 723776 R 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase; catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by phenylalanine or high concentration of tyrosine or tryptophan; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA,IEA]; GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IDA] [PMID 2880280]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence IEA]; GO_process: GO:0009423 - chorismate biosynthetic process [Evidence TAS] [PMID 1943992]; GO_process: GO:0006950 - response to stress [Evidence IEA]; 3-deoxy-7-phosphoheptulonate synthase ARO3 complement(722631..723776) Sugiyamaella lignohabitans 30037029 AWJ20_4853 CDS AWJ20_4853 NC_031673.1 725223 726275 D uncharacterized protein 725223..726275 Sugiyamaella lignohabitans 30037030 AWJ20_4854 CDS PWP1 NC_031673.1 726495 728198 R Protein with WD-40 repeats involved in rRNA processing; associates with trans-acting ribosome biogenesis factors; similar to beta-transducin superfamily; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IPI] [PMID 15588312]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IMP,ISS] [PMID 15588312]; Pwp1p complement(726495..728198) Sugiyamaella lignohabitans 30037031 AWJ20_4855 CDS MSS4 NC_031673.1 730157 732340 D Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase 730157..732340 Sugiyamaella lignohabitans 30037032 AWJ20_4856 CDS NMT1 NC_031673.1 734400 735878 D N-myristoyl transferase; catalyzes the cotranslational, covalent attachment of myristic acid to the N-terminal glycine residue of several proteins involved in cellular growth and signal transduction; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 1544917]; GO_function: GO:0004379 - glycylpeptide N-tetradecanoyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004379 - glycylpeptide N-tetradecanoyltransferase activity [Evidence IMP] [PMID 8955162]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0018008 - N-terminal peptidyl-glycine N-myristoylation [Evidence TAS] [PMID 10570244]; GO_process: GO:0006499 - N-terminal protein myristoylation [Evidence IEA]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 10921902]; glycylpeptide N-tetradecanoyltransferase NMT1 734400..735878 Sugiyamaella lignohabitans 30037033 AWJ20_4857 CDS COX5A NC_031673.1 736235 736729 R Subunit Va of cytochrome c oxidase; cytochrome c oxidase is the terminal member of the mitochondrial inner membrane electron transport chain; Cox5Ap is predominantly expressed during aerobic growth while its isoform Vb (Cox5Bp) is expressed during anaerobic growth; COX5A has a paralog, COX5B, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005751 - mitochondrial respiratory chain complex IV [Evidence IPI] [PMID 1331058]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IEA,IEA]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IMP] [PMID 1847916]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0006123 - mitochondrial electron transport, cytochrome c to oxygen [Evidence IDA] [PMID 1331058]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; cytochrome c oxidase subunit Va complement(736235..736729) Sugiyamaella lignohabitans 30037034 AWJ20_4858 CDS MUP1 NC_031673.1 740999 742726 D High affinity methionine permease; integral membrane protein with 13 putative membrane-spanning regions; also involved in cysteine uptake; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 8893857]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000102 - L-methionine secondary active transmembrane transporter activity [Evidence IDA] [PMID 8893857]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0042883 - cysteine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0044690 - methionine import [Evidence IGI,IMP] [PMID 8893857]; GO_process: GO:0015821 - methionine transport [Evidence IDA] [PMID 11330701]; GO_process: GO:0000101 - sulfur amino acid transport [Evidence IMP] [PMID 8893857]; GO_process: GO:0006810 - transport [Evidence IEA]; Mup1p 740999..742726 Sugiyamaella lignohabitans 30037035 AWJ20_4859 CDS PSK2 NC_031673.1 742984 745986 R serine/threonine protein kinase PSK2 complement(742984..745986) Sugiyamaella lignohabitans 30037036 AWJ20_4860 CDS MON2 NC_031673.1 752760 756962 D Protein with a role in endocytosis and vacuole integrity; peripheral membrane protein; interacts with and negatively regulates Arl1p; localizes to the endosome; member of the Sec7p family of proteins; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005829 - cytosol [Evidence TAS] [PMID 12052896]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12052896]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 12052896]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16301316]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IGI,IPI,ISS] [PMID 12052896]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IMP] [PMID 16301316]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 12052896]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12134085]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IMP,ISS] [PMID 11169758]; Mon2p 752760..756962 Sugiyamaella lignohabitans 30037038 AWJ20_4861 CDS CHS3 NC_031673.1 757091 760846 R Chitin synthase III; catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan; contains overlapping di-leucine and di-acidic signals that mediate, respectively, intracellular trafficking by AP-1 and trafficking to plasma membrane by exomer complex; requires AP-3 complex for its intracellular retention; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15470103]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0045009 - chitosome [Evidence IDA] [PMID 8970154]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9008706]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9008706]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 15755916]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IMP] [PMID 9760183]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 1293886]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence TAS] [PMID 7565410]; chitin synthase CHS3 complement(757091..760846) Sugiyamaella lignohabitans 30037039 AWJ20_4862 CDS AWJ20_4862 NC_031673.1 763153 763563 R uncharacterized protein complement(763153..763563) Sugiyamaella lignohabitans 30037040 AWJ20_4863 CDS MSD1 NC_031673.1 764663 766093 R Mitochondrial aspartyl-tRNA synthetase; required for acylation of aspartyl-tRNA; yeast and bacterial aspartyl-, asparaginyl-, and lysyl-tRNA synthetases contain regions with high sequence similarity, suggesting a common ancestral gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP,ISS] [PMID 2668951]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004815 - aspartate-tRNA ligase activity [Evidence IEA]; GO_function: GO:0004815 - aspartate-tRNA ligase activity [Evidence IMP,ISA] [PMID 2668951]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0070146 - mitochondrial aspartyl-tRNA aminoacylation [Evidence IGI] [PMID 10710420]; GO_process: GO:0070146 - mitochondrial aspartyl-tRNA aminoacylation [Evidence IMP] [PMID 2668951]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; aspartate--tRNA ligase MSD1 complement(764663..766093) Sugiyamaella lignohabitans 30037041 AWJ20_4864 CDS RPN11 NC_031673.1 767860 768792 D Metalloprotease subunit of 19S regulatory particle; part of 26S proteasome lid; couples the deubiquitination and degradation of proteasome substrates; involved, independent of catalytic activity, in fission of mitochondria and peroxisomes; protein abundance increases in response to DNA replication stress; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19773362]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19773362]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15210724]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 11742986]; GO_component: GO:0008541 - proteasome regulatory particle, lid subcomplex [Evidence IDA] [PMID 9741626]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence ISS] [PMID 12183636]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IMP] [PMID 12183636]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IMP] [PMID 12353037]; GO_process: GO:0000266 - mitochondrial fission [Evidence IMP] [PMID 19773362]; GO_process: GO:0016559 - peroxisome fission [Evidence IMP] [PMID 19773362]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12183636]; GO_process: GO:0016579 - protein deubiquitination [Evidence IMP] [PMID 12183636]; GO_process: GO:0016579 - protein deubiquitination [Evidence IGI] [PMID 14581483]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; proteasome regulatory particle lid subunit RPN11 767860..768792 Sugiyamaella lignohabitans 30037042 AWJ20_4865 CDS SSE2 NC_031673.1 769241 771364 R Member of the heat shock protein 70 (HSP70) family; may be involved in protein folding; localized to the cytoplasm; SSE2 has a paralog, SSE1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IDA] [PMID 16688212]; GO_function: GO:0005516 - calmodulin binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence ISS] [PMID 8406043]; GO_process: GO:0042026 - protein refolding [Evidence IGI] [PMID 16688211]; GO_process: GO:0006950 - response to stress [Evidence IEA]; adenyl-nucleotide exchange factor SSE2 complement(769241..771364) Sugiyamaella lignohabitans 30037043 AWJ20_4866 CDS NPL4 NC_031673.1 771842 773323 R Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase; assists Cdc48p in the dislocation of misfolded, polyubiquitinated ERAD substrates that are subsequently delivered to the proteasome for degradation; also involved in the regulated destruction of resident ER membrane proteins, such as HMG-CoA reductase (Hmg1/2p) and cytoplasmic proteins (Fbp1p); role in mobilizing membrane bound transcription factors by regulated ubiquitin/proteasome-dependent processing (RUP); GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11598205]; GO_component: GO:0034098 - Cdc48p-Npl4p-Ufd1p AAA ATPase complex [Evidence IDA] [PMID 11733065]; GO_component: GO:0036266 - Cdc48p-Npl4p-Vms1p AAA ATPase complex [Evidence IDA] [PMID 21070972]; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873065]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:1990112 - RQC complex [Evidence IDA] [PMID 23178123]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 11598205]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11740563]; GO_process: GO:0071712 - ER-associated misfolded protein catabolic process [Evidence IMP] [PMID 11813000]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 11739805]; GO_process: GO:0071629 - cytoplasm-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 18812321]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0072671 - mitochondria-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21070972]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 14636562]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 22505030]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11598205]; GO_process: GO:1900182 - positive regulation of protein localization to nucleus [Evidence IMP] [PMID 11733065]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 20206597]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0030970 - retrograde protein transport, ER to cytosol [Evidence IMP] [PMID 11740563]; GO_process: GO:1990116 - ribosome-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 23358411]; GO_process: GO:0006810 - transport [Evidence IEA]; Npl4p complement(771842..773323) Sugiyamaella lignohabitans 30037044 AWJ20_4867 CDS bdc1 NC_031673.1 774150 776045 R bromodomain containing protein 1, Bdc1 complement(774150..776045) Sugiyamaella lignohabitans 30037045 AWJ20_4868 CDS SEC66 NC_031673.1 777130 777489 D Sec63 complex subunit SEC66 777130..777489 Sugiyamaella lignohabitans 30037046 AWJ20_4869 CDS SMY2 NC_031673.1 780196 784647 R GYF domain protein; involved in COPII vesicle formation; interacts with the Sec23p/Sec24p subcomplex; overexpression suppresses the temperature sensitivity of a myo2 mutant; similar to S. pombe Mpd2; SMY2 has a paralog, SYH1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 17804396]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 17973654]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 17973654]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 17973654]; Smy2p complement(780196..784647) Sugiyamaella lignohabitans 30037047 AWJ20_4870 CDS SAD1 NC_031673.1 785371 787437 D Conserved zinc-finger domain protein involved in pre-mRNA splicing; critical for splicing of nearly all intron-containing genes; required for assembly of U4 snRNA into the U4/U6 particle; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10022888]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 10022888]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IDA] [PMID 24681967]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Sad1p 785371..787437 Sugiyamaella lignohabitans 30037049 AWJ20_4871 CDS UMP1 NC_031673.1 788160 788480 R Chaperone required for correct maturation of the 20S proteasome; short-lived chaperone; may inhibit premature dimerization of proteasome half-mers; degraded by proteasome upon completion of its assembly; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11922673]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11922673]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IDA] [PMID 10975253]; GO_process: GO:0043248 - proteasome assembly [Evidence IGI] [PMID 17431397]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP] [PMID 9491890]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 9491890]; Ump1p complement(788160..788480) Sugiyamaella lignohabitans 30037050 AWJ20_4872 CDS PTC5 NC_031673.1 789365 790984 D Mitochondrial type 2C protein phosphatase (PP2C); involved in regulation of pyruvate dehydrogenase activity by dephosphorylating the serine 133 of the Pda1p subunit; localizes to the intermembrane space and is imported via the presequence pathway and processed by the inner membrane protease (Imp1p-Imp2p); acts in concert with kinases Pkp1p and Pkp2p and phosphatase Ptc6p; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16643908]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004741 - [pyruvate dehydrogenase (lipoamide)] phosphatase activity [Evidence IEA]; GO_function: GO:0004741 - [pyruvate dehydrogenase (lipoamide)] phosphatase activity [Evidence ISS] [PMID 16643908]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]; GO_function: GO:0004722 - protein serine/threonine phosphatase activity [Evidence IDA,ISS] [PMID 10580002]; GO_process: GO:0043085 - positive regulation of catalytic activity [Evidence IMP] [PMID 18180296]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IEA]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 10580002]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IMP] [PMID 16643908]; type 2C protein phosphatase PTC5 789365..790984 Sugiyamaella lignohabitans 30037051 AWJ20_4873 CDS AWJ20_4873 NC_031673.1 791263 792141 R Glucose-6-phosphate 1-epimerase (hexose-6-phosphate mutarotase); likely involved in carbohydrate metabolism; GFP-fusion protein localizes to both the nucleus and cytoplasm and is induced in response to the DNA-damaging agent MMS; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0030246 - carbohydrate binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0047938 - glucose-6-phosphate 1-epimerase activity [Evidence IEA]; GO_function: GO:0047938 - glucose-6-phosphate 1-epimerase activity [Evidence IDA] [PMID 16857670]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0044262 - cellular carbohydrate metabolic process [Evidence IC] [PMID 16857670]; glucose-6-phosphate 1-epimerase complement(791263..792141) Sugiyamaella lignohabitans 30037052 AWJ20_4874 CDS SIT1 NC_031673.1 793841 795592 D Ferrioxamine B transporter; member of the ARN family of transporters that specifically recognize siderophore-iron chelates; transcription is induced during iron deprivation and diauxic shift; potentially phosphorylated by Cdc28p; GO_component: GO:0016023 - cytoplasmic membrane-bounded vesicle [Evidence IDA] [PMID 10748025]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 19469713]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0015344 - siderophore uptake transmembrane transporter activity [Evidence IMP,ISS] [PMID 9884238]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IDA,IMP] [PMID 9884238]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0015891 - siderophore transport [Evidence IMP] [PMID 9884238]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 9884238]; GO_process: GO:0006810 - transport [Evidence IEA]; Sit1p 793841..795592 Sugiyamaella lignohabitans 30037053 AWJ20_4875 CDS AWJ20_4875 NC_031673.1 799253 800890 D uncharacterized protein 799253..800890 Sugiyamaella lignohabitans 30037054 AWJ20_4876 CDS AWJ20_4876 NC_031673.1 800776 801924 R uncharacterized protein complement(800776..801924) Sugiyamaella lignohabitans 30037055 AWJ20_4877 CDS VPS21 NC_031673.1 802480 802965 R Endosomal Rab family GTPase; required for endocytic transport and sorting of vacuolar hydrolases; required for endosomal localization of the CORVET complex; required with YPT52 for MVB biogenesis and sorting; involved in autophagy and ionic stress tolerance; geranylgeranylation required for membrane association; protein abundance increases in response to DNA replication stress; mammalian Rab5 homolog; VPS21 has a paralog, YPT53, that arose from the whole genome duplication; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0005770 - late endosome [Evidence IMP] [PMID 11872141]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 11210571]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 8163546]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 22748138]; GO_process: GO:0006895 - Golgi to endosome transport [Evidence IGI,IMP] [PMID 23612966]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8163546]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 22748138]; GO_process: GO:0036258 - multivesicular body assembly [Evidence IGI] [PMID 22748138]; GO_process: GO:0036010 - protein localization to endosome [Evidence IGI] [PMID 23264632]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 8163546]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0000011 - vacuole inheritance [Evidence IMP] [PMID 1493335]; Rab family GTPase VPS21 complement(802480..802965) Sugiyamaella lignohabitans 30037056 AWJ20_4878 CDS AWJ20_4878 NC_031673.1 806682 808730 R uncharacterized protein complement(806682..808730) Sugiyamaella lignohabitans 30037057 AWJ20_4879 CDS ICL1 NC_031673.1 811385 813019 D Isocitrate lyase; catalyzes the formation of succinate and glyoxylate from isocitrate, a key reaction of the glyoxylate cycle; expression of ICL1 is induced by growth on ethanol and repressed by growth on glucose; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IEA,IEA]; GO_function: GO:0004451 - isocitrate lyase activity [Evidence IMP,ISS] [PMID 1551398]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_process: GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA,IEA]; GO_process: GO:0006097 - glyoxylate cycle [Evidence TAS] [PMID 11092862]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA]; isocitrate lyase 1 811385..813019 Sugiyamaella lignohabitans 30037058 AWJ20_4880 CDS RGD1 NC_031673.1 816619 818925 D GTPase-activating protein (RhoGAP) for Rho3p and Rho4p; possibly involved in control of actin cytoskeleton organization; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10931290]; GO_component: GO:0005933 - cellular bud [Evidence IDA] [PMID 10931290]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005100 - Rho GTPase activator activity [Evidence IDA,IGI] [PMID 10526184]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA,IMP] [PMID 18845541]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA,IMP] [PMID 18845541]; GO_function: GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence IDA] [PMID 21215255]; GO_function: GO:0070273 - phosphatidylinositol-4-phosphate binding [Evidence IDA,IMP] [PMID 18845541]; GO_function: GO:0010314 - phosphatidylinositol-5-phosphate binding [Evidence IDA,IMP] [PMID 18845541]; GO_process: GO:0007231 - osmosensory signaling pathway [Evidence IGI] [PMID 10590461]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0001101 - response to acid [Evidence IMP] [PMID 16087742]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; Rgd1p 816619..818925 Sugiyamaella lignohabitans 30037060 AWJ20_4881 CDS CUL3 NC_031673.1 819143 821929 R Ubiquitin-protein ligase; forms a complex with Elc1p that polyubiquitylates monoubiquitylated RNA polymerase II to trigger its proteolysis; cullin family member with similarity to Cdc53p and human CUL3; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IDA] [PMID 16675952]; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IMP] [PMID 17296727]; GO_component: GO:0031461 - cullin-RING ubiquitin ligase complex [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0031625 - ubiquitin protein ligase binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 12676951]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16675952]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 17296727]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IC] [PMID 12676951]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence ISS] [PMID 9531531]; cullin CUL3 complement(819143..821929) Sugiyamaella lignohabitans 30037061 AWJ20_4882 CDS TRS33 NC_031673.1 825460 826128 D Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990070 - TRAPPI protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:1990072 - TRAPPIII protein complex [Evidence IDA] [PMID 20375281]; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 19843283]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0000407 - pre-autophagosomal structure [Evidence IEA]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 19843283]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI] [PMID 9564032]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IGI] [PMID 19843283]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Trs33p 825460..826128 Sugiyamaella lignohabitans 30037062 AWJ20_4883 CDS OCA1 NC_031673.1 826385 827491 R putative tyrosine protein phosphatase OCA1 complement(826385..827491) Sugiyamaella lignohabitans 30037063 AWJ20_4884 CDS RAS1 NC_031673.1 829550 830287 R GTPase involved in G-protein signaling in adenylate cyclase activation; plays a role in cell proliferation; localized to the plasma membrane; homolog of mammalian RAS proto-oncogenes; relative distribution to the nucleus increases upon DNA replication stress; RAS1 has a paralog, RAS2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 20162532]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 3513173]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 14674766]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 6327067]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0007189 - adenylate cyclase-activating G-protein coupled receptor signaling pathway [Evidence IDA] [PMID 3891097]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 2981630]; GO_process: GO:0045762 - positive regulation of adenylate cyclase activity [Evidence IGI] [PMID 3891097]; GO_process: GO:0097271 - protein localization to bud neck [Evidence IGI] [PMID 12782684]; GO_process: GO:0001302 - replicative cell aging [Evidence IMP] [PMID 8034612]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; Ras family GTPase RAS1 complement(829550..830287) Sugiyamaella lignohabitans 30037064 AWJ20_4885 CDS PHO23 NC_031673.1 838397 840295 R Component of the Rpd3L histone deacetylase complex; involved in transcriptional regulation of PHO5; affects termination of snoRNAs and cryptic unstable transcripts (CUTs); C-terminus has similarity to human candidate tumor suppressor p33(ING1) and its isoform ING3; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286007]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16286008]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 16314178]; GO_component: GO:0033698 - Rpd3L complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0000118 - histone deacetylase complex [Evidence IDA] [PMID 12672825]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 16728974]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 17142463]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA,IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IMP,IPI,ISS] [PMID 10805724]; GO_process: GO:0061188 - negative regulation of chromatin silencing at rDNA [Evidence IMP] [PMID 16286008]; GO_process: GO:0061186 - negative regulation of chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16286008]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 16314178]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP] [PMID 19372273]; GO_process: GO:0016479 - negative regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 19270272]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 17210643]; GO_process: GO:0061408 - positive regulation of transcription from RNA polymerase II promoter in response to heat stress [Evidence IMP] [PMID 20398213]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Pho23p complement(838397..840295) Sugiyamaella lignohabitans 30037065 AWJ20_4886 CDS AEP3 NC_031673.1 840788 842791 D Peripheral mitochondrial inner membrane protein; may facilitate use of unformylated tRNA-Met in mitochondrial translation initiation; stabilizes the bicistronic AAP1-ATP6 mRNA; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 14742425]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 14742425]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016071 - mRNA metabolic process [Evidence IMP] [PMID 14742425]; GO_process: GO:0070124 - mitochondrial translational initiation [Evidence IGI] [PMID 19843529]; Aep3p 840788..842791 Sugiyamaella lignohabitans 30037066 AWJ20_4887 CDS NCR1 NC_031673.1 846302 849751 D Vacuolar membrane protein; transits through the biosynthetic vacuolar protein sorting pathway, involved in sphingolipid metabolism; cells lacking Ncr1p exhibit high levels of long chain bases (LCB), similar to the accumulation of high amounts of lipids observed in patients with Neimann-Pick C, a disease caused by loss-of-function mutations in NPC1, the functional ortholog of Ncr1p; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 16138904]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0008158 - hedgehog receptor activity [Evidence IEA]; GO_function: GO:0046624 - sphingolipid transporter activity [Evidence IMP] [PMID 14970192]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IEA]; GO_process: GO:0006665 - sphingolipid metabolic process [Evidence IMP] [PMID 14970192]; GO_process: GO:0006810 - transport [Evidence IEA]; Ncr1p 846302..849751 Sugiyamaella lignohabitans 30037067 AWJ20_4889 CDS HMT1 NC_031673.1 850799 851839 D Nuclear SAM-dependent mono- and asymmetric methyltransferase; modifies hnRNPs, including Npl3p and Hrp1p, affecting their activity and nuclear export; methylates U1 snRNP protein Snp1p and ribosomal protein Rps2p; interacts genetically with genes encoding components of Rpd3(L) and this interaction is important for Rpd3 recruitment to the subtelomeric region; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8668183]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0035242 - protein-arginine omega-N asymmetric methyltransferase activity [Evidence IDA,IMP] [PMID 8647869]; GO_function: GO:0035241 - protein-arginine omega-N monomethyltransferase activity [Evidence IDA,IMP] [PMID 8647869]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI] [PMID 10952997]; GO_process: GO:0006406 - mRNA export from nucleus [Evidence IGI] [PMID 8668183]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0060567 - negative regulation of DNA-templated transcription, termination [Evidence IMP] [PMID 20053728]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IMP] [PMID 18515076]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IMP] [PMID 20035717]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IDA] [PMID 22997150]; GO_process: GO:0018216 - peptidyl-arginine methylation [Evidence IDA,IMP] [PMID 8647869]; GO_process: GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter [Evidence IMP] [PMID 20053728]; GO_process: GO:0006479 - protein methylation [Evidence IEA]; protein-arginine omega-N methyltransferase HMT1 850799..851839 Sugiyamaella lignohabitans 30037069 AWJ20_4890 CDS VHC1 NC_031673.1 852123 855020 R Vacuolar membrane cation-chloride cotransporter (CCC); likely mediates K+ and Cl- cotransport into the vacuole; has a role in potassium homeostasis and salt tolerance; similar to mammalian electroneutral Na(+)-(K+)-C1- cotransporter family; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031166 - integral component of vacuolar membrane [Evidence IDA] [PMID 23022132]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015379 - potassium:chloride symporter activity [Evidence IMP,ISA] [PMID 23022132]; GO_process: GO:0055075 - potassium ion homeostasis [Evidence IGI] [PMID 23022132]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0034486 - vacuolar transmembrane transport [Evidence IMP] [PMID 23022132]; Vhc1p complement(852123..855020) Sugiyamaella lignohabitans 30037071 AWJ20_4891 CDS VHC1 NC_031673.1 855368 856006 R Vacuolar membrane cation-chloride cotransporter (CCC); likely mediates K+ and Cl- cotransport into the vacuole; has a role in potassium homeostasis and salt tolerance; similar to mammalian electroneutral Na(+)-(K+)-C1- cotransporter family; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031166 - integral component of vacuolar membrane [Evidence IDA] [PMID 23022132]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0015379 - potassium:chloride symporter activity [Evidence IMP,ISA] [PMID 23022132]; GO_process: GO:0055075 - potassium ion homeostasis [Evidence IGI] [PMID 23022132]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0034486 - vacuolar transmembrane transport [Evidence IMP] [PMID 23022132]; Vhc1p complement(855368..856006) Sugiyamaella lignohabitans 30037072 AWJ20_4892 CDS ABD1 NC_031673.1 857008 858786 R Methyltransferase; catalyzes the transfer of a methyl group from S-adenosylmethionine to the GpppN terminus of capped mRNA; nuclear protein that relocalizes to the cytosol in response to hypoxia; GO_component: GO:0016591 - DNA-directed RNA polymerase II, holoenzyme [Evidence IPI] [PMID 11018011]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11018011]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004482 - mRNA (guanine-N7-)-methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0004482 - mRNA (guanine-N7-)-methyltransferase activity [Evidence IDA,ISS] [PMID 7623811]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IEA,IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IDA] [PMID 7623811]; GO_process: GO:0036265 - RNA (guanine-N7)-methylation [Evidence IEA,IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 14967145]; Abd1p complement(857008..858786) Sugiyamaella lignohabitans 30037073 AWJ20_4893 CDS CMC1 NC_031673.1 865737 866093 R COX assembly mitochondrial protein complement(865737..866093) Sugiyamaella lignohabitans 30037074 AWJ20_4894 CDS spc24 NC_031673.1 866778 867416 D spindle pole body protein Spc24 866778..867416 Sugiyamaella lignohabitans 30037075 AWJ20_4895 CDS AWJ20_4895 NC_031673.1 867689 869290 R Uncharacterized protein YKL098W complement(867689..869290) Sugiyamaella lignohabitans 30037076 AWJ20_4896 CDS UTP11 NC_031673.1 869640 870392 D Subunit of U3-containing Small Subunit (SSU) processome complex; involved in production of 18S rRNA and assembly of small ribosomal subunit; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12068309]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15489292]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Utp11p 869640..870392 Sugiyamaella lignohabitans 30037077 AWJ20_4897 CDS HAS1 NC_031673.1 871443 873332 R ATP-dependent RNA helicase; involved in the biogenesis of 40S and 60S ribosome subunits; localizes to both the nuclear periphery and nucleolus; highly enriched in nuclear pore complex fractions; constituent of 66S pre-ribosomal particles; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 10684247]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15049817]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 15718299]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 15718299]; GO_function: GO:0008186 - RNA-dependent ATPase activity [Evidence IDA] [PMID 15718299]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 23788678]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15049817]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 15242642]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 15049817]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP] [PMID 23788678]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 15049817]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 23788678]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; ATP-dependent RNA helicase HAS1 complement(871443..873332) Sugiyamaella lignohabitans 30037078 AWJ20_4898 CDS SUV3 NC_031673.1 875646 877121 D ATP-dependent RNA helicase; component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates RNA turnover; also required during splicing of the COX1 AI5_beta intron; GO_component: GO:0000262 - mitochondrial chromosome [Evidence IDA] [PMID 21911497]; GO_component: GO:0045025 - mitochondrial degradosome [Evidence IDA] [PMID 12426313]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 12426313]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence IDA] [PMID 17658549]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008859 - exoribonuclease II activity [Evidence IDA] [PMID 17658549]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000372 - Group I intron splicing [Evidence IGI] [PMID 20064926]; GO_process: GO:0006264 - mitochondrial DNA replication [Evidence IMP] [PMID 21911497]; GO_process: GO:0000957 - mitochondrial RNA catabolic process [Evidence IMP] [PMID 12426313]; Suv3p 875646..877121 Sugiyamaella lignohabitans 30037079 AWJ20_4899 CDS ARP2 NC_031673.1 877948 878958 D Essential component of the Arp2/3 complex; Arp2/3 is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity; required for efficient Golgi-to-ER trafficking in COPI mutants; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IEA]; GO_component: GO:0005885 - Arp2/3 protein complex [Evidence IDA] [PMID 10377407]; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11248049]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA,IMP] [PMID 15657399]; GO_function: GO:0016887 - ATPase activity [Evidence IMP] [PMID 16862144]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IMP] [PMID 16862144]; GO_process: GO:0034314 - Arp2/3 complex-mediated actin nucleation [Evidence IEA]; GO_process: GO:0034314 - Arp2/3 complex-mediated actin nucleation [Evidence IMP] [PMID 16862144]; GO_process: GO:0032258 - CVT pathway [Evidence IMP] [PMID 18287533]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 10377407]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 17118118]; GO_process: GO:0051654 - establishment of mitochondrion localization [Evidence IMP] [PMID 16107558]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IMP,IPI] [PMID 11248049]; GO_process: GO:0030833 - regulation of actin filament polymerization [Evidence IEA]; actin-related protein 2 877948..878958 Sugiyamaella lignohabitans 30037080 AWJ20_4900 CDS AWJ20_4900 NC_031673.1 879174 880973 R uncharacterized protein complement(879174..880973) Sugiyamaella lignohabitans 30037083 AWJ20_4902 CDS hus1 NC_031673.1 884710 885375 D checkpoint clamp complex protein Hus1 884710..885375 Sugiyamaella lignohabitans 30037085 AWJ20_4903 CDS SER1 NC_031673.1 885684 886841 R 3-phosphoserine aminotransferase; catalyzes the formation of phosphoserine from 3-phosphohydroxypyruvate, required for serine and glycine biosynthesis; regulated by the general control of amino acid biosynthesis mediated by Gcn4p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IEA,IEA]; GO_function: GO:0004648 - O-phospho-L-serine:2-oxoglutarate aminotransferase activity [Evidence IMP,ISS] [PMID 8017107]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006564 - L-serine biosynthetic process [Evidence IMP,ISS] [PMID 8017107]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0009113 - purine nucleobase biosynthetic process [Evidence IMP] [PMID 10509016]; GO_process: GO:0009070 - serine family amino acid biosynthetic process [Evidence IMP] [PMID 1326413]; O-phospho-L-serine:2-oxoglutarate transaminase complement(885684..886841) Sugiyamaella lignohabitans 30037086 AWJ20_4904 CDS AWJ20_4904 NC_031673.1 888611 889315 D uncharacterized protein 888611..889315 Sugiyamaella lignohabitans 30037087 AWJ20_4905 CDS BUD23 NC_031673.1 889958 890764 R Methyltransferase; methylates residue G1575 of 18S rRNA; required for rRNA processing and nuclear export of 40S ribosomal subunits independently of methylation activity; diploid mutant displays random budding pattern; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 18332120]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISS] [PMID 9873020]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0016435 - rRNA (guanine) methyltransferase activity [Evidence IMP] [PMID 18332120]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0000282 - cellular bud site selection [Evidence IMP] [PMID 11452010]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 18332120]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0070476 - rRNA (guanine-N7)-methylation [Evidence IMP] [PMID 18332120]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IMP] [PMID 18332120]; Bud23p complement(889958..890764) Sugiyamaella lignohabitans 30037088 AWJ20_4906 CDS VMA4 NC_031673.1 892332 893027 R Subunit E of the V1 domain of the vacuolar H+-ATPase (V-ATPase); V-ATPase is an electrogenic proton pump found throughout the endomembrane system; V1 domain has eight subunits; required for the V1 domain to assemble onto the vacuolar membrane; protein abundance increases in response to DNA replication stress; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence TAS] [PMID 11717306]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23708375]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence IDA] [PMID 16774922]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 10224039]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 9442887]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; H(+)-transporting V1 sector ATPase subunit E complement(892332..893027) Sugiyamaella lignohabitans 30037089 AWJ20_4907 CDS AWJ20_4907 NC_031673.1 894757 895827 D uncharacterized protein 894757..895827 Sugiyamaella lignohabitans 30037090 AWJ20_4908 CDS CSR1 NC_031673.1 899325 900770 D Phosphatidylinositol transfer protein; has a potential role in regulating lipid and fatty acid metabolism under heme-depleted conditions; interacts specifically with thioredoxin peroxidase; may have a role in oxidative stress resistance; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12869188]; GO_component: GO:0005768 - endosome [Evidence IEA,IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 10848624]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 12869188]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 17803462]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA] [PMID 10848624]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IGI] [PMID 10848624]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IGI] [PMID 16126894]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0045717 - negative regulation of fatty acid biosynthetic process [Evidence IDA,IGI,IMP] [PMID 17803462]; GO_process: GO:1901352 - negative regulation of phosphatidylglycerol biosynthetic process [Evidence IGI] [PMID 12869188]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IGI] [PMID 16262726]; GO_process: GO:0009395 - phospholipid catabolic process [Evidence IEA]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 10848624]; GO_process: GO:2001247 - positive regulation of phosphatidylcholine biosynthetic process [Evidence IGI] [PMID 12869188]; GO_process: GO:0006810 - transport [Evidence IEA]; Csr1p 899325..900770 Sugiyamaella lignohabitans 30037091 AWJ20_4909 CDS APL5 NC_031673.1 903030 905768 D Delta adaptin-like subunit of the clathrin associated protein complex; functions in transport of alkaline phosphatase to the vacuole via the alternate pathway; suppressor of loss of casein kinase 1 function; the clathrin associated protein complex is also known as AP-3; GO_component: GO:0030123 - AP-3 adaptor complex [Evidence IMP] [PMID 9250663]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA,IEA]; GO_component: GO:0030665 - clathrin-coated vesicle membrane [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 10559961]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006896 - Golgi to vacuole transport [Evidence IMP] [PMID 9335339]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 17895371]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Apl5p 903030..905768 Sugiyamaella lignohabitans 30037092 AWJ20_4910 CDS RAD52 NC_031673.1 906218 907750 D Protein that stimulates strand exchange; stimulates strand exchange by facilitating Rad51p binding to single-stranded DNA; anneals complementary single-stranded DNA; involved in the repair of double-strand breaks in DNA during vegetative growth and meiosis and UV induced sister chromatid recombination; GO_component: GO:0000228 - nuclear chromosome [Evidence IDA] [PMID 12766777]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11459964]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0000150 - recombinase activity [Evidence IDA] [PMID 15205482]; GO_process: GO:0006277 - DNA amplification [Evidence IMP] [PMID 23271978]; GO_process: GO:0000730 - DNA recombinase assembly [Evidence IDA] [PMID 11459983]; GO_process: GO:0006310 - DNA recombination [Evidence IEA,IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0000733 - DNA strand renaturation [Evidence IDA] [PMID 9619627]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 17096599]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 17096599]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IMP] [PMID 24190138]; GO_process: GO:0045002 - double-strand break repair via single-strand annealing [Evidence IGI] [PMID 11606529]; GO_process: GO:0000709 - meiotic joint molecule formation [Evidence IGI,IMP] [PMID 18313389]; GO_process: GO:0006301 - postreplication repair [Evidence IMP] [PMID 7038396]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IMP] [PMID 11238918]; recombinase RAD52 906218..907750 Sugiyamaella lignohabitans 30037094 AWJ20_4911 CDS GCD7 NC_031673.1 907976 908749 R Beta subunit of the translation initiation factor eIF2B; the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IGI,IPI] [PMID 8336705]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IMP] [PMID 8441423]; GO_component: GO:0005851 - eukaryotic translation initiation factor 2B complex [Evidence IDA,IPI] [PMID 8506384]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IPI] [PMID 8336705]; GO_component: GO:0032045 - guanyl-nucleotide exchange factor complex [Evidence IDA] [PMID 8506384]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI] [PMID 8164676]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI,IPI] [PMID 8887689]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IMP] [PMID 9032257]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IPI] [PMID 8336705]; GO_function: GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA] [PMID 8506384]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IGI,IPI] [PMID 8336705]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI] [PMID 8164676]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA] [PMID 8506384]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IGI,IPI] [PMID 8887689]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IMP] [PMID 9032257]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA]; translation initiation factor eIF2B subunit beta complement(907976..908749) Sugiyamaella lignohabitans 30037095 AWJ20_4912 CDS AWJ20_4912 NC_031673.1 909623 910453 D uncharacterized protein 909623..910453 Sugiyamaella lignohabitans 30037096 AWJ20_4913 CDS JEN1 NC_031673.1 911509 912012 D Monocarboxylate/proton symporter of the plasma membrane; transport activity is dependent on the pH gradient across the membrane; mediates high-affinity uptake of carbon sources lactate, pyuvate, and acetate, and also of the micronutrient selenite, whose structure mimics that of monocarboxylates; expression and localization are tightly regulated, with transcription repression, mRNA degradation, and protein endocytosis and degradation all occurring in the presence of glucose; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17710650]; GO_function: GO:0015144 - carbohydrate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015355 - secondary active monocarboxylate transmembrane transporter activity [Evidence IMP] [PMID 17710650]; GO_function: GO:0097079 - selenite:proton symporter activity [Evidence IMP] [PMID 20861301]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 10198029]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0006849 - plasma membrane pyruvate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0097080 - plasma membrane selenite transport [Evidence IMP] [PMID 20861301]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Jen1p 911509..912012 Sugiyamaella lignohabitans 30037097 AWJ20_4914 CDS JEN1 NC_031673.1 912067 913065 D Monocarboxylate/proton symporter of the plasma membrane; transport activity is dependent on the pH gradient across the membrane; mediates high-affinity uptake of carbon sources lactate, pyuvate, and acetate, and also of the micronutrient selenite, whose structure mimics that of monocarboxylates; expression and localization are tightly regulated, with transcription repression, mRNA degradation, and protein endocytosis and degradation all occurring in the presence of glucose; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17710650]; GO_function: GO:0015144 - carbohydrate transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015355 - secondary active monocarboxylate transmembrane transporter activity [Evidence IMP] [PMID 17710650]; GO_function: GO:0097079 - selenite:proton symporter activity [Evidence IMP] [PMID 20861301]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_process: GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 10198029]; GO_process: GO:0035879 - plasma membrane lactate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0006849 - plasma membrane pyruvate transport [Evidence IMP] [PMID 17710650]; GO_process: GO:0097080 - plasma membrane selenite transport [Evidence IMP] [PMID 20861301]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Jen1p 912067..913065 Sugiyamaella lignohabitans 30037098 AWJ20_4915 CDS AWJ20_4915 NC_031673.1 913920 914177 D uncharacterized protein 913920..914177 Sugiyamaella lignohabitans 30037099 AWJ20_4916 CDS PRP8 NC_031673.1 914375 915817 R Component of U4/U6-U5 snRNP complex; involved in second catalytic step of splicing; participates in spliceosomal assembly through its interaction with U1 snRNA; largest and most evolutionarily conserved protein of the spliceosome; mutations in its human ortholog, PRPF8, cause Retinitis pigmentosa and missplicing in Myelodysplastic syndrome; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 17934474]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720285]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 17934474]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17934474]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0030619 - U1 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030620 - U2 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IEA]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 9848662]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IEA]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0097157 - pre-mRNA intronic binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID 17626844]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 22408182]; GO_process: GO:0000389 - mRNA 3'-splice site recognition [Evidence IMP] [PMID 10628969]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IMP] [PMID 17934474]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IDA] [PMID 23393194]; U4/U6-U5 snRNP complex component PRP8 complement(914375..915817) Sugiyamaella lignohabitans 30037100 AWJ20_4917 CDS PRP8 NC_031673.1 916027 921720 R Component of U4/U6-U5 snRNP complex; involved in second catalytic step of splicing; participates in spliceosomal assembly through its interaction with U1 snRNA; largest and most evolutionarily conserved protein of the spliceosome; mutations in its human ortholog, PRPF8, cause Retinitis pigmentosa and missplicing in Myelodysplastic syndrome; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 17934474]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720284]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 11720285]; GO_component: GO:0005682 - U5 snRNP [Evidence IDA] [PMID 17934474]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 17934474]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0030619 - U1 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030620 - U2 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IEA]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0030623 - U5 snRNA binding [Evidence IDA] [PMID 9848662]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IEA]; GO_function: GO:0017070 - U6 snRNA binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0097157 - pre-mRNA intronic binding [Evidence IDA] [PMID 23393194]; GO_function: GO:0000386 - second spliceosomal transesterification activity [Evidence IMP] [PMID 17626844]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0000350 - generation of catalytic spliceosome for second transesterification step [Evidence IMP] [PMID 22408182]; GO_process: GO:0000389 - mRNA 3'-splice site recognition [Evidence IMP] [PMID 10628969]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IMP] [PMID 17934474]; GO_process: GO:0000244 - spliceosomal tri-snRNP complex assembly [Evidence IDA] [PMID 23393194]; U4/U6-U5 snRNP complex component PRP8 complement(916027..921720) Sugiyamaella lignohabitans 30037101 AWJ20_4918 CDS STS1 NC_031673.1 926261 927481 R Protein required for localizing proteasomes to the nucleus; involved in cotranslational protein degradation; mediates interaction between nuclear import factor Srp1p and the proteasome; Sts1p and Srp1p couple proteasomes to nascent polypeptides emerging from the ribosome for cotranslational degradation; involved in ubiquitin-mediated protein degradation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10913188]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 8065366]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0071630 - nucleus-associated proteasomal ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 21075847]; GO_process: GO:0031144 - proteasome localization [Evidence IEA]; GO_process: GO:0031144 - proteasome localization [Evidence IMP] [PMID 21075847]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Sts1p complement(926261..927481) Sugiyamaella lignohabitans 30037102 AWJ20_4919 CDS THS1 NC_031673.1 928588 930895 D Threonyl-tRNA synthetase; essential cytoplasmic protein; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 2995918]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0016876 - ligase activity, forming aminoacyl-tRNA and related compounds [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence ISA] [PMID 2995918]; GO_function: GO:0004829 - threonine-tRNA ligase activity [Evidence IDA] [PMID 8143729]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IMP] [PMID 10471698]; GO_process: GO:0043039 - tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006435 - threonyl-tRNA aminoacylation [Evidence ISA] [PMID 2995918]; GO_process: GO:0006435 - threonyl-tRNA aminoacylation [Evidence IDA] [PMID 8143729]; GO_process: GO:0006412 - translation [Evidence IEA]; threonine--tRNA ligase THS1 join(928588..928674,928835..930895) Sugiyamaella lignohabitans 30037103 AWJ20_4920 CDS SIF2 NC_031673.1 931120 932925 R WD40 repeat-containing subunit of Set3C histone deacetylase complex; complex represses early/middle sporulation genes; antagonizes telomeric silencing; binds specifically to the Sir4p N-terminus; GO_component: GO:0070210 - Rpd3L-Expanded complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0034967 - Set3 complex [Evidence IDA] [PMID 11711434]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9651685]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0016575 - histone deacetylation [Evidence IDA] [PMID 11711434]; GO_process: GO:0031939 - negative regulation of chromatin silencing at telomere [Evidence IMP,IPI] [PMID 9651685]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IPI] [PMID 11711434]; GO_process: GO:0032874 - positive regulation of stress-activated MAPK cascade [Evidence IMP] [PMID 18487345]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IMP] [PMID 19379692]; Sif2p complement(931120..932925) Sugiyamaella lignohabitans 30037105 AWJ20_4921 CDS EXO84 NC_031673.1 934139 936700 D Exocyst subunit with dual roles in exocytosis and spliceosome assembly; subunit of the the exocyst complex which mediates polarized targeting and tethering of post-Golgi secretory vesicles to active sites of exocytosis at the plasma membrane (PM) prior to SNARE-mediated fusion; required for exocyst assembly and targeting the complex to specific sites on the bud tip PM; associates the U1 snRNP; role in pre-mRNA splicing and prespliceosome formation; possible Cdc28 substrate; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 10438536]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 10438536]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0000145 - exocyst [Evidence IDA] [PMID 10438536]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 10438536]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0030133 - transport vesicle [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IMP] [PMID 10438536]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IMP] [PMID 15788396]; GO_process: GO:0001927 - exocyst assembly [Evidence IMP] [PMID 15788396]; GO_process: GO:0051601 - exocyst localization [Evidence IMP] [PMID 15788396]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IGI,IMP] [PMID 10438536]; GO_process: GO:0006887 - exocytosis [Evidence IMP] [PMID 15788396]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0000245 - spliceosomal complex assembly [Evidence IMP,IPI] [PMID 11425851]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0090522 - vesicle tethering involved in exocytosis [Evidence IC] [PMID 10438536]; Exo84p 934139..936700 Sugiyamaella lignohabitans 30037106 AWJ20_4922 CDS TRI1 NC_031673.1 937041 938000 R Non-essential sumoylated hypothetical protein; similar to components of human SWI/SNF complex including SMRD3; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm, nucleus and nucleolus; TRI1 has a paralog, UAF30, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Tri1p complement(937041..938000) Sugiyamaella lignohabitans 30037107 AWJ20_4923 CDS CAB2 NC_031673.1 938658 941835 R Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC); subunits of this complex are: Cab2p, Cab3p, Cab4p, Cab5p, Sis2p and Vhs3p; probable phosphopantothenoylcysteine synthetase (PPCS), which catalyzes the second step of coenzyme A biosynthesis from pantothenate; null mutant lethality is complemented by E. coli coaBC (encoding a bifunctional enzyme with PPCS activity); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence IEA]; GO_function: GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence ISS] [PMID 11923312]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 11923312]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IGI] [PMID 19266201]; phosphopantothenate--cysteine ligase CAB2 complement(join(938658..940304,940996..941835)) Sugiyamaella lignohabitans 30037108 AWJ20_4924 CDS PUB1 NC_031673.1 949197 950243 D Poly (A)+ RNA-binding protein; abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8413212]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 8413213]; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 23222640]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8413212]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15964806]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IMP] [PMID 8413212]; GO_function: GO:0003729 - mRNA binding [Evidence IDA,IMP] [PMID 8413213]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008266 - poly(U) RNA binding [Evidence IDA] [PMID 8413213]; GO_process: GO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [Evidence IDA] [PMID 10892745]; GO_process: GO:0043488 - regulation of mRNA stability [Evidence IMP] [PMID 15964806]; GO_process: GO:0034063 - stress granule assembly [Evidence IMP] [PMID 18981231]; Pub1p 949197..950243 Sugiyamaella lignohabitans 30037109 AWJ20_4925 CDS UBP1 NC_031673.1 951662 953401 D Ubiquitin-specific protease; removes ubiquitin from ubiquitinated proteins; cleaves at the C terminus of ubiquitin fusions irrespective of their size; capable of cleaving polyubiquitin chains; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 1429680]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15635103]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 15635103]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 1429680]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA] [PMID 1429680]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA] [PMID 2050695]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp1p 951662..953401 Sugiyamaella lignohabitans 30037110 AWJ20_4926 CDS GUT1 NC_031673.1 954209 955822 R Glycerol kinase; converts glycerol to glycerol-3-phosphate; glucose repression of expression is mediated by Adr1p and Ino2p-Ino4p; derepression of expression on non-fermentable carbon sources is mediated by Opi1p and Rsf1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0004370 - glycerol kinase activity [Evidence IEA,IEA]; GO_function: GO:0004370 - glycerol kinase activity [Evidence IMP,ISS] [PMID 8358828]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0019563 - glycerol catabolic process [Evidence IEA]; GO_process: GO:0006071 - glycerol metabolic process [Evidence IEA]; GO_process: GO:0006071 - glycerol metabolic process [Evidence TAS] [PMID 8358828]; GO_process: GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; glycerol kinase complement(954209..955822) Sugiyamaella lignohabitans 30037111 AWJ20_4927 CDS AWJ20_4927 NC_031673.1 961417 962115 R uncharacterized protein complement(961417..962115) Sugiyamaella lignohabitans 30037112 AWJ20_4928 CDS FMP37 NC_031673.1 963337 963648 D Mpc1p 963337..963648 Sugiyamaella lignohabitans 30037113 AWJ20_4929 CDS AWJ20_4929 NC_031673.1 963887 964933 R uncharacterized protein complement(963887..964933) Sugiyamaella lignohabitans 30037114 AWJ20_4930 CDS AWJ20_4930 NC_031673.1 965985 967706 R uncharacterized protein complement(965985..967706) Sugiyamaella lignohabitans 30037116 AWJ20_4931 CDS GEP4 NC_031673.1 968037 968618 R Mitochondrial phosphatidylglycerophosphatase (PGP phosphatase); dephosphorylates phosphatidylglycerolphosphate to generate phosphatidylglycerol, an essential step during cardiolipin biosynthesis; null mutant is sensitive to tunicamycin, DTT; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 20485265]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IEA]; GO_function: GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IDA,IGI,IMP] [PMID 20485265]; GO_process: GO:0032049 - cardiolipin biosynthetic process [Evidence IMP] [PMID 20485265]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006655 - phosphatidylglycerol biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA]; GO_process: GO:0046838 - phosphorylated carbohydrate dephosphorylation [Evidence IMP] [PMID 20485265]; Gep4p complement(968037..968618) Sugiyamaella lignohabitans 30037117 AWJ20_4932 CDS AWJ20_4932 NC_031673.1 972542 973846 R uncharacterized protein complement(972542..973846) Sugiyamaella lignohabitans 30037118 AWJ20_4933 CDS CRZ1 NC_031673.1 975920 979045 R DNA-binding transcription factor CRZ1 complement(975920..979045) Sugiyamaella lignohabitans 30037119 AWJ20_4934 CDS GID7 NC_031673.1 982375 984192 D Subunit of GID Complex that binds directly to central component Vid30p; GID complex is involved in proteasome-dependent catabolite inactivation of fructose-1,6-bisphosphatase; Gid7p contains six WD40 repeats; computational analysis suggests that Gid7p and Moh1p have similar functions; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 18508925]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; glucose-induced degradation complex subunit GID7 982375..984192 Sugiyamaella lignohabitans 30037120 AWJ20_4935 CDS ALO1 NC_031673.1 984745 986340 R D-Arabinono-1,4-lactone oxidase; catalyzes the final step in biosynthesis of dehydro-D-arabinono-1,4-lactone, which is protective against oxidative stress; GO_component: GO:0031307 - integral component of mitochondrial outer membrane [Evidence IDA] [PMID 16689936]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10094636]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003885 - D-arabinono-1,4-lactone oxidase activity [Evidence IEA,IEA]; GO_function: GO:0003885 - D-arabinono-1,4-lactone oxidase activity [Evidence IDA] [PMID 10094636]; GO_function: GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]; GO_function: GO:0016899 - oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 10094636]; GO_process: GO:0070485 - dehydro-D-arabinono-1,4-lactone biosynthetic process [Evidence IMP] [PMID 10094636]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; D-arabinono-1,4-lactone oxidase complement(984745..986340) Sugiyamaella lignohabitans 30037121 AWJ20_4936 CDS AWJ20_4936 NC_031673.1 986836 988308 D uncharacterized protein 986836..988308 Sugiyamaella lignohabitans 30037122 AWJ20_4937 CDS PHO84 NC_031673.1 994711 996717 D phosphate transporter PHO84 994711..996717 Sugiyamaella lignohabitans 30037123 AWJ20_4938 CDS CUS2 NC_031673.1 998023 998436 R Putative checkpoint factor in transcription; binds to U2 snRNA and Prp11p; may be involved in U2 snRNA folding; contains two RNA recognition motifs (RRMs); GO_component: GO:0005686 - U2 snRNP [Evidence TAS] [PMID 11804584]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP,ISS] [PMID 9710584]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI,IPI] [PMID 9710584]; Cus2p complement(998023..998436) Sugiyamaella lignohabitans 30037124 AWJ20_4939 CDS CUS2 NC_031673.1 998592 999323 R Putative checkpoint factor in transcription; binds to U2 snRNA and Prp11p; may be involved in U2 snRNA folding; contains two RNA recognition motifs (RRMs); GO_component: GO:0005686 - U2 snRNP [Evidence TAS] [PMID 11804584]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IMP,ISS] [PMID 9710584]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI,IPI] [PMID 9710584]; Cus2p complement(998592..999323) Sugiyamaella lignohabitans 30037125 AWJ20_4940 CDS TPO3 NC_031673.1 999602 1001269 R Polyamine transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; specific for spermine; localizes to the plasma membrane; TPO3 has a paralog, TPO2, that arose from the whole genome duplication; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IMP] [PMID 11171066]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 12562762]; GO_function: GO:0015297 - antiporter activity [Evidence IEA]; GO_function: GO:0000297 - spermine transmembrane transporter activity [Evidence IMP] [PMID 11171066]; GO_process: GO:0000296 - spermine transport [Evidence IMP] [PMID 11171066]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpo3p complement(999602..1001269) Sugiyamaella lignohabitans 30037127 AWJ20_4941 CDS AWJ20_4941 NC_031673.1 1003096 1003914 R hydrophobic surface binding protein A complement(1003096..1003914) Sugiyamaella lignohabitans 30037128 AWJ20_4942 CDS AWJ20_4942 NC_031673.1 1010664 1012022 R uncharacterized protein complement(1010664..1012022) Sugiyamaella lignohabitans 30037129 AWJ20_4943 CDS STE11 NC_031673.1 1016263 1019097 R mitogen-activated protein kinase kinase kinase STE11 complement(1016263..1019097) Sugiyamaella lignohabitans 30037130 AWJ20_4944 CDS RAD16 NC_031673.1 1023031 1025604 D Nucleotide excision repair (NER) protein; binds damaged DNA during NER; binds DNA in an ATP-dependent manner (with Rad7p) during NER; required for NER of non-transcribed chromatin; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex; GO_component: GO:0031463 - Cul3-RING ubiquitin ligase complex [Evidence IDA] [PMID 16675952]; GO_component: GO:0000113 - nucleotide-excision repair factor 4 complex [Evidence IDA] [PMID 9497356]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 9497356]; GO_function: GO:0003684 - damaged DNA binding [Evidence IDA] [PMID 9497356]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 16675952]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0000715 - nucleotide-excision repair, DNA damage recognition [Evidence IDA,IMP] [PMID 15177043]; GO_process: GO:0042787 - protein ubiquitination involved in ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 16675952]; DNA repair protein RAD16 1023031..1025604 Sugiyamaella lignohabitans 30037131 AWJ20_4946 CDS SOR1 NC_031673.1 1026316 1027365 R Sorbitol dehydrogenase; expression is induced in the presence of sorbitol or xylose; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003939 - L-iditol 2-dehydrogenase activity [Evidence IEA]; GO_function: GO:0003939 - L-iditol 2-dehydrogenase activity [Evidence IDA,ISS] [PMID 8125328]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0019318 - hexose metabolic process [Evidence IEP] [PMID 8125328]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; L-iditol 2-dehydrogenase SOR1 complement(1026316..1027365) Sugiyamaella lignohabitans 30037133 AWJ20_4947 CDS LYP1 NC_031673.1 1030449 1032098 D lysine permease 1030449..1032098 Sugiyamaella lignohabitans 30037134 AWJ20_4948 CDS CHS3 NC_031673.1 1032380 1035931 R Chitin synthase III; catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan; contains overlapping di-leucine and di-acidic signals that mediate, respectively, intracellular trafficking by AP-1 and trafficking to plasma membrane by exomer complex; requires AP-3 complex for its intracellular retention; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15470103]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 8909536]; GO_component: GO:0045009 - chitosome [Evidence IDA] [PMID 8970154]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9008706]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15470103]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9008706]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 15755916]; GO_function: GO:0004100 - chitin synthase activity [Evidence IEA]; GO_function: GO:0004100 - chitin synthase activity [Evidence IMP] [PMID 9760183]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0030476 - ascospore wall assembly [Evidence IMP] [PMID 1293886]; GO_process: GO:0034221 - fungal-type cell wall chitin biosynthetic process [Evidence TAS] [PMID 7565410]; chitin synthase CHS3 complement(1032380..1035931) Sugiyamaella lignohabitans 30037135 AWJ20_4949 CDS URH1 NC_031673.1 1037460 1038506 D Uridine nucleosidase (uridine-cytidine N-ribohydrolase); cleaves N-glycosidic bonds in nucleosides; involved in the pyrimidine salvage and nicotinamide riboside salvage pathways; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO_function: GO:0070635 - nicotinamide riboside hydrolase activity [Evidence IDA] [PMID 19001417]; GO_function: GO:0070636 - nicotinic acid riboside hydrolase activity [Evidence IDA] [PMID 19001417]; GO_function: GO:0050263 - ribosylpyrimidine nucleosidase activity [Evidence IDA] [PMID 11872485]; GO_function: GO:0050263 - ribosylpyrimidine nucleosidase activity [Evidence IDA] [PMID 12111094]; GO_function: GO:0045437 - uridine nucleosidase activity [Evidence IEA]; GO_function: GO:0045437 - uridine nucleosidase activity [Evidence IDA] [PMID 19001417]; GO_process: GO:0034356 - NAD biosynthesis via nicotinamide riboside salvage pathway [Evidence IGI] [PMID 19001417]; GO_process: GO:0006216 - cytidine catabolic process [Evidence IMP] [PMID 23670538]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0019358 - nicotinate nucleotide salvage [Evidence IGI] [PMID 17482543]; GO_process: GO:0046135 - pyrimidine nucleoside catabolic process [Evidence IDA] [PMID 11872485]; GO_process: GO:0046135 - pyrimidine nucleoside catabolic process [Evidence IDA] [PMID 12111094]; GO_process: GO:0008655 - pyrimidine-containing compound salvage [Evidence IMP] [PMID 11872485]; GO_process: GO:0006218 - uridine catabolic process [Evidence IMP] [PMID 23670538]; trifunctional uridine nucleosidase/nicotinamide riboside hydrolase/nicotinic acid riboside hydrolase 1037460..1038506 Sugiyamaella lignohabitans 30037136 AWJ20_4950 CDS GAL11 NC_031673.1 1038815 1043804 R Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; affects transcription by acting as target of activators and repressors; forms part of the tail domain of mediator; GO_component: GO:0070847 - core mediator complex [Evidence IDA] [PMID 9891034]; GO_component: GO:0016592 - mediator complex [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0001102 - RNA polymerase II activating transcription factor binding [Evidence IDA] [PMID 20308326]; GO_function: GO:0001128 - RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly [Evidence IDA] [PMID 8378310]; GO_function: GO:0001104 - RNA polymerase II transcription cofactor activity [Evidence IEA]; GO_function: GO:0001135 - RNA polymerase II transcription factor recruiting transcription factor activity [Evidence IMP] [PMID 15254252]; GO_function: GO:0001088 - TFIIE-class binding transcription factor activity [Evidence IDA] [PMID 8790357]; GO_function: GO:0001095 - TFIIE-class transcription factor binding [Evidence IDA] [PMID 8790357]; GO_function: GO:0001097 - TFIIH-class transcription factor binding [Evidence IDA] [PMID 10973956]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IDA] [PMID 12482986]; GO_process: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11470794]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 8187178]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9891034]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Gal11p complement(join(1038815..1043134,1043463..1043527,1043699..1043804)) Sugiyamaella lignohabitans 30037138 AWJ20_4951 CDS YVC1 NC_031673.1 1048115 1050901 R Vacuolar cation channel; mediates release of Ca(2+) from the vacuole in response to hyperosmotic shock; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11427713]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 11781332]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 20035756]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005227 - calcium activated cation channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005262 - calcium channel activity [Evidence IEA]; GO_function: GO:0005262 - calcium channel activity [Evidence IDA] [PMID 11781332]; GO_function: GO:0005216 - ion channel activity [Evidence IEA]; GO_function: GO:0005267 - potassium channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005272 - sodium channel activity [Evidence IDA] [PMID 1700419]; GO_function: GO:0005244 - voltage-gated ion channel activity [Evidence IDA] [PMID 1700419]; GO_process: GO:0070588 - calcium ion transmembrane transport [Evidence IEA]; GO_process: GO:0006816 - calcium ion transport [Evidence IEA]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IDA,IMP] [PMID 11427713]; GO_process: GO:0030003 - cellular cation homeostasis [Evidence IDA,IMP] [PMID 11781332]; GO_process: GO:0006811 - ion transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Yvc1p complement(1048115..1050901) Sugiyamaella lignohabitans 30037139 AWJ20_4952 CDS SPS19 NC_031673.1 1052006 1052797 D Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 9268358]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0008670 - 2,4-dienoyl-CoA reductase (NADPH) activity [Evidence IDA,ISS] [PMID 9268358]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0030437 - ascospore formation [Evidence IEP,IMP] [PMID 7969036]; GO_process: GO:0009062 - fatty acid catabolic process [Evidence IDA,ISS] [PMID 9268358]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Sps19p 1052006..1052797 Sugiyamaella lignohabitans 30037140 AWJ20_4953 CDS AWJ20_4953 NC_031673.1 1055821 1058106 D uncharacterized protein 1055821..1058106 Sugiyamaella lignohabitans 30037141 AWJ20_4954 CDS GCN20 NC_031673.1 1058423 1060684 D Positive regulator of the Gcn2p kinase activity; forms a complex with Gcn1p; proposed to stimulate Gcn2p activation by an uncharged tRNA; GO_component: GO:0005829 - cytosol [Evidence IPI] [PMID 9234705]; GO_component: GO:0022626 - cytosolic ribosome [Evidence IDA] [PMID 9234705]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 7621831]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006448 - regulation of translational elongation [Evidence IMP,IPI] [PMID 9234705]; putative AAA family ATPase GCN20 1058423..1060684 Sugiyamaella lignohabitans 30037142 AWJ20_4955 CDS DIS3 NC_031673.1 1060860 1063883 R Exosome core complex catalytic subunit; has both endonuclease and 3'-5' exonuclease activity; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; role in degradation of tRNAs; has similarity to E. coli RNase R and to human DIS3; mutations in Dis3p corresponding to human mutations implicated in multiple myeloma cause phenotypes suggesting impaired exosome function; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9562621]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IDA,IMP] [PMID 17173052]; GO_function: GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IDA,IMP] [PMID 17643380]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0004519 - endonuclease activity [Evidence IEA]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA,IMP] [PMID 19060886]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA] [PMID 19060898]; GO_function: GO:0004521 - endoribonuclease activity [Evidence IDA,IMP] [PMID 19129231]; GO_function: GO:0004527 - exonuclease activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IDA,IMP] [PMID 17643380]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 9390555]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IMP] [PMID 11352936]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IMP] [PMID 19481524]; GO_process: GO:0071028 - nuclear mRNA surveillance [Evidence IMP] [PMID 11030620]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IMP] [PMID 15935759]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IC] [PMID 10465791]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 16431988]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 18940861]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IGI] [PMID 15145828]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15935758]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA,IMP] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0016075 - rRNA catabolic process [Evidence IMP] [PMID 10508172]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; exosome catalytic subunit DIS3 complement(1060860..1063883) Sugiyamaella lignohabitans 30037143 AWJ20_4956 CDS SKI8 NC_031673.1 1064005 1065479 D Ski complex component and WD-repeat protein; mediates 3'-5' RNA degradation by the cytoplasmic exosome; also required for meiotic double-strand break recombination; null mutants have superkiller phenotype; GO_component: GO:0055087 - Ski complex [Evidence IDA] [PMID 10744028]; GO_component: GO:0055087 - Ski complex [Evidence IDA,IPI] [PMID 18042677]; GO_component: GO:0005694 - chromosome [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000228 - nuclear chromosome [Evidence IDA] [PMID 14992724]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0051607 - defense response to virus [Evidence IEA]; GO_process: GO:0007126 - meiotic nuclear division [Evidence IEA]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IGI,IMP] [PMID 12881429]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IMP] [PMID 9482746]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 11910110]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IMP] [PMID 17660569]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 14992724]; GO_process: GO:0065004 - protein-DNA complex assembly [Evidence IMP] [PMID 14992724]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IGI,IMP,IPI] [PMID 14992724]; SKI complex subunit WD repeat protein SKI8 join(1064005..1064046,1064506..1064511,1064592..1065479) Sugiyamaella lignohabitans 30037144 AWJ20_4957 CDS PRP6 NC_031673.1 1066075 1069014 R Splicing factor; component of the U4/U6-U5 snRNP complex; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10377396]; GO_component: GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence IDA] [PMID 10449419]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IPI] [PMID 10377396]; Prp6p complement(1066075..1069014) Sugiyamaella lignohabitans 30037145 AWJ20_4958 CDS ISW2 NC_031673.1 1069305 1072295 R ATP-dependent DNA translocase involved in chromatin remodeling; ATPase component that, with Itc1p, forms a complex required for repression of a-specific genes, INO1, and early meiotic genes during mitotic growth; the Isw2 complex exhibits basal levels of chromatin binding throughout the genome as well as target-specific chromatin interactions; targeted by Ume6p- and Sua7p-dependent DNA looping to many loci genome-wide; GO_component: GO:0008623 - CHRAC [Evidence IPI,ISS] [PMID 14673157]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11238381]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 19203228]; GO_function: GO:0003682 - chromatin binding [Evidence IEA]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 16227570]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0031491 - nucleosome binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 19203228]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IMP] [PMID 11238381]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA,IMP] [PMID 16227570]; GO_process: GO:0000183 - chromatin silencing at rDNA [Evidence IMP] [PMID 17689493]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 14673157]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 17689493]; GO_process: GO:0060195 - negative regulation of antisense RNA transcription [Evidence IGI] [PMID 18075583]; GO_process: GO:0046020 - negative regulation of transcription from RNA polymerase II promoter by pheromones [Evidence IMP] [PMID 12624196]; GO_process: GO:0016584 - nucleosome positioning [Evidence IDA] [PMID 15116071]; GO_process: GO:0016584 - nucleosome positioning [Evidence IDA] [PMID 17949749]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 16227570]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IGI] [PMID 12504018]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Isw2p complement(1069305..1072295) Sugiyamaella lignohabitans 30037146 AWJ20_4959 CDS HNM1 NC_031673.1 1077739 1079295 D Plasma membrane transporter for choline, ethanolamine, and carnitine; involved in the uptake of nitrogen mustard and the uptake of glycine betaine during hypersaline stress; co-regulated with phospholipid biosynthetic genes and negatively regulated by choline and myo-inositol; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 2203793]; GO_function: GO:1901235 - (R)-carnitine transmembrane transporter activity [Evidence IMP] [PMID 23755272]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IMP] [PMID 2203793]; GO_function: GO:0015220 - choline transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_function: GO:0034228 - ethanolamine transmembrane transporter activity [Evidence IGI] [PMID 3514579]; GO_process: GO:1900749 - (R)-carnitine transport [Evidence IMP] [PMID 23755272]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015871 - choline transport [Evidence IMP] [PMID 2203793]; GO_process: GO:0015871 - choline transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0034229 - ethanolamine transport [Evidence IGI] [PMID 3514579]; GO_process: GO:0031460 - glycine betaine transport [Evidence IMP] [PMID 16487344]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Hnm1p 1077739..1079295 Sugiyamaella lignohabitans 30037147 AWJ20_4960 CDS MYO5 NC_031673.1 1083035 1086493 D One of two type I myosin motors; contains proline-rich tail homology 2 (TH2) and SH3 domains; MYO5 deletion has little effect on growth, but myo3 myo5 double deletion causes severe defects in growth and actin cytoskeleton organization; MYO5 has a paralog, MYO3, that arose from the whole genome duplication; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 16824951]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 20647997]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0016459 - myosin complex [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000146 - microfilament motor activity [Evidence IDA] [PMID 16824951]; GO_function: GO:0003774 - motor activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IGI,IMP] [PMID 18177206]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 10652251]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 16824951]; GO_process: GO:0006887 - exocytosis [Evidence TAS] [PMID 10652251]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence TAS] [PMID 10652251]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0006898 - receptor-mediated endocytosis [Evidence IMP] [PMID 8614799]; GO_process: GO:0006970 - response to osmotic stress [Evidence TAS] [PMID 10652251]; GO_process: GO:0009651 - response to salt stress [Evidence IGI,IPI] [PMID 12391157]; myosin 5 1083035..1086493 Sugiyamaella lignohabitans 30037149 AWJ20_4962 CDS SEO1 NC_031673.1 1088422 1090065 D putative permease SEO1 1088422..1090065 Sugiyamaella lignohabitans 30037151 AWJ20_4963 CDS PAN3 NC_031673.1 1091776 1093512 D Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex; complex acts to control poly(A) tail length and regulate the stoichiometry and activity of postreplication repair complexes; GO_component: GO:0031251 - PAN complex [Evidence IDA] [PMID 8816488]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004535 - poly(A)-specific ribonuclease activity [Evidence IDA,IMP] [PMID 8816488]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IDA] [PMID 11953437]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IMP,IPI] [PMID 8816488]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0006301 - postreplication repair [Evidence IGI,IPI] [PMID 11953437]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; Pan3p 1091776..1093512 Sugiyamaella lignohabitans 30037152 AWJ20_4964 CDS CYB2 NC_031673.1 1097279 1099405 R Cytochrome b2 (L-lactate cytochrome-c oxidoreductase); component of the mitochondrial intermembrane space, required for lactate utilization; expression is repressed by glucose and anaerobic conditions; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 3004948]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 6290489]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0070469 - respiratory chain [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004460 - L-lactate dehydrogenase (cytochrome) activity [Evidence IDA] [PMID 3004948]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006089 - lactate metabolic process [Evidence IMP] [PMID 8492799]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Cyb2p complement(join(1097279..1097589,1098268..1099405)) Sugiyamaella lignohabitans 30037153 AWJ20_4965 CDS TAF11 NC_031673.1 1101852 1102523 D TFIID subunit (40 kDa); involved in RNA polymerase II transcription initiation, similar to histone H3 with atypical histone fold motif of Spt3-like transcription factors; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10818000]; GO_function: GO:0046982 - protein heterodimerization activity [Evidence IEA]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IMP] [PMID 12840001]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 9083082]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf11p 1101852..1102523 Sugiyamaella lignohabitans 30037154 AWJ20_4966 CDS SAC1 NC_031673.1 1102842 1105616 R Phosphatidylinositol phosphate (PtdInsP) phosphatase; involved in hydrolysis of PtdIns[4]P in the early and medial Golgi; regulated by interaction with Vps74p; ER localized transmembrane protein which cycles through the Golgi; involved in protein trafficking and processing, secretion, and cell wall maintenance; regulates sphingolipid biosynthesis through the modulation of PtdIns(4)P metabolism; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 22553352]; GO_component: GO:0035339 - SPOTS complex [Evidence IDA] [PMID 20182505]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA,IMP] [PMID 15657391]; GO_component: GO:0030173 - integral component of Golgi membrane [Evidence IDA] [PMID 8314848]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,IMP] [PMID 11514624]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IMP] [PMID 11792713]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,IMP] [PMID 15657391]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 8314848]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016791 - phosphatase activity [Evidence IMP] [PMID 22452743]; GO_function: GO:0043813 - phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity [Evidence IDA] [PMID 10625610]; GO_function: GO:0004438 - phosphatidylinositol-3-phosphatase activity [Evidence IDA] [PMID 10625610]; GO_function: GO:0043812 - phosphatidylinositol-4-phosphate phosphatase activity [Evidence IDA] [PMID 10625610]; GO_function: GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IDA,IGI,IMP] [PMID 10625610]; GO_process: GO:0046856 - phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 22553352]; phosphatidylinositol-3-phosphatase SAC1 complement(1102842..1105616) Sugiyamaella lignohabitans 30037155 AWJ20_4967 CDS CCT8 NC_031673.1 1106562 1108235 D Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct8p 1106562..1108235 Sugiyamaella lignohabitans 30037156 AWJ20_4968 CDS MSS4 NC_031673.1 1110950 1112794 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(1110950..1112794) Sugiyamaella lignohabitans 30037157 AWJ20_4969 CDS CDC11 NC_031673.1 1116892 1118268 D Component of the septin ring that is required for cytokinesis; septins are GTP-binding proteins that assemble into rod-like hetero-oligomers that can associate with other rods to form filaments; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins between mother and daughter cells; GO_component: GO:0005619 - ascospore wall [Evidence IDA] [PMID 8636217]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 1934633]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 18826657]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 8791410]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0072687 - meiotic spindle [Evidence IDA] [PMID 18826657]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 18826657]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_component: GO:0031105 - septin complex [Evidence IDA] [PMID 18550837]; GO_component: GO:0031105 - septin complex [Evidence IPI] [PMID 9813094]; GO_component: GO:0032160 - septin filament array [Evidence IDA] [PMID 15282341]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 18826657]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 18550837]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IC] [PMID 10882120]; GO_process: GO:0000281 - mitotic cytokinesis [Evidence IMP] [PMID 4950437]; GO_process: GO:0045860 - positive regulation of protein kinase activity [Evidence IDA] [PMID 14527412]; septin CDC11 1116892..1118268 Sugiyamaella lignohabitans 30037158 AWJ20_4970 CDS SAT4 NC_031673.1 1118508 1122203 R serine/threonine protein kinase SAT4 complement(1118508..1122203) Sugiyamaella lignohabitans 30037160 AWJ20_4971 CDS KGD1 NC_031673.1 1128650 1131523 D Subunit of the mitochondrial alpha-ketoglutarate dehydrogenase complex; catalyzes a key step in the tricarboxylic acid (TCA) cycle, the oxidative decarboxylation of alpha-ketoglutarate to form succinyl-CoA; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IEA,IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 11926067]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0009353 - mitochondrial oxoglutarate dehydrogenase complex [Evidence IDA] [PMID 2072900]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016624 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor [Evidence IEA]; GO_function: GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IEA,IEA]; GO_function: GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence TAS] [PMID 9175438]; GO_function: GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]; GO_process: GO:0006103 - 2-oxoglutarate metabolic process [Evidence TAS] [PMID 9175438]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence IEA,IEA]; GO_process: GO:0006099 - tricarboxylic acid cycle [Evidence TAS] [PMID 9175438]; alpha-ketoglutarate dehydrogenase KGD1 1128650..1131523 Sugiyamaella lignohabitans 30037161 AWJ20_4972 CDS AWJ20_4972 NC_031673.1 1130657 1131256 R uncharacterized protein complement(1130657..1131256) Sugiyamaella lignohabitans 30037162 AWJ20_4973 CDS AWJ20_4973 NC_031673.1 1132153 1134036 R Double-strand-break repair protein rad21-like protein 1 complement(1132153..1134036) Sugiyamaella lignohabitans 30037163 AWJ20_4975 CDS SCP1 NC_031673.1 1136414 1137226 D Component of yeast cortical actin cytoskeleton; binds and cross links actin filaments; originally identified by its homology to calponin (contains a calponin-like repeat) but the Scp1p domain structure is more similar to transgelin; GO_component: GO:0030479 - actin cortical patch [Evidence IEA]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 12857851]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_function: GO:0051015 - actin filament binding [Evidence IDA] [PMID 12857851]; GO_function: GO:0030674 - protein binding, bridging [Evidence IDA] [PMID 12857851]; GO_process: GO:0007015 - actin filament organization [Evidence IDA] [PMID 12857851]; GO_process: GO:0001300 - chronological cell aging [Evidence IGI,IMP] [PMID 15024029]; Scp1p 1136414..1137226 Sugiyamaella lignohabitans 30037165 AWJ20_4976 CDS AWJ20_4976 NC_031673.1 1137605 1138135 D uncharacterized protein 1137605..1138135 Sugiyamaella lignohabitans 30037166 AWJ20_4977 CDS MIP1 NC_031673.1 1138305 1141826 R Mitochondrial DNA polymerase gamma subunit; conserved C-terminal segment is required for the maintenance of mitochondrial genome; its human ortholog, POLG, can rescue mip1 phenotypes, and mutations in POLG are associated with Alpers-Huttenlocher syndrome (AHS) and other mitochondrial diseases; Mip1p is the single subunit of mitochondrial DNA polymerase in yeast, in contrast to metazoans in which there is a complex of a catalytic subunit and an accessory subunit; GO_component: GO:0005760 - gamma DNA polymerase complex [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10567545]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008408 - 3'-5' exonuclease activity [Evidence IDA] [PMID 20601675]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 20601675]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006261 - DNA-dependent DNA replication [Evidence IEA]; GO_process: GO:0006264 - mitochondrial DNA replication [Evidence IDA] [PMID 12023279]; GO_process: GO:0006264 - mitochondrial DNA replication [Evidence IMP] [PMID 2684980]; DNA-directed DNA polymerase gamma MIP1 complement(1138305..1141826) Sugiyamaella lignohabitans 30037167 AWJ20_4978 CDS AWJ20_4978 NC_031673.1 1142699 1143340 D uncharacterized protein 1142699..1143340 Sugiyamaella lignohabitans 30037168 AWJ20_4979 CDS OXR1 NC_031673.1 1143662 1144726 R hypothetical protein required for oxidative damage resistance; required for normal levels of resistance to oxidative damage; null mutants are sensitive to hydrogen peroxide; member of a conserved family of proteins found in eukaryotes; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 15060142]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 11114193]; Oxr1p complement(1143662..1144726) Sugiyamaella lignohabitans 30037169 AWJ20_4980 CDS PUT4 NC_031673.1 1145796 1146866 R Proline permease; required for high-affinity transport of proline; also transports the toxic proline analog azetidine-2-carboxylate (AzC); PUT4 transcription is repressed in ammonia-grown cells; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IMP] [PMID 3552672]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015175 - neutral amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IDA,IGI] [PMID 8455553]; GO_process: GO:0015804 - neutral amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0015824 - proline transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; proline permease PUT4 complement(1145796..1146866) Sugiyamaella lignohabitans 30037171 AWJ20_4981 CDS PUT4 NC_031673.1 1147052 1147507 R Proline permease; required for high-affinity transport of proline; also transports the toxic proline analog azetidine-2-carboxylate (AzC); PUT4 transcription is repressed in ammonia-grown cells; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence ISS] [PMID 10654085]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IGI] [PMID 14968425]; GO_function: GO:0015193 - L-proline transmembrane transporter activity [Evidence IMP] [PMID 3552672]; GO_function: GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015175 - neutral amino acid transmembrane transporter activity [Evidence IDA] [PMID 10654085]; GO_process: GO:0003333 - amino acid transmembrane transport [Evidence IEA]; GO_process: GO:0006865 - amino acid transport [Evidence IEA,IEA]; GO_process: GO:0015812 - gamma-aminobutyric acid transport [Evidence IDA,IGI] [PMID 8455553]; GO_process: GO:0015804 - neutral amino acid transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0015824 - proline transport [Evidence IDA] [PMID 10654085]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; proline permease PUT4 complement(1147052..1147507) Sugiyamaella lignohabitans 30037172 AWJ20_4982 CDS MTW1 NC_031673.1 1150661 1151479 R MIND complex subunit MTW1 complement(1150661..1151479) Sugiyamaella lignohabitans 30037173 AWJ20_4983 CDS RPA43 NC_031673.1 1153279 1154337 R RNA polymerase I subunit A43; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 11486042]; GO_component: GO:0005736 - DNA-directed RNA polymerase I complex [Evidence IDA] [PMID 9837969]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001054 - RNA polymerase I activity [Evidence IDA] [PMID 9837969]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IDA] [PMID 9837969]; GO_process: GO:0042790 - transcription of nuclear large rRNA transcript from RNA polymerase I promoter [Evidence IGI] [PMID 7592632]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; DNA-directed RNA polymerase I subunit RPA43 complement(1153279..1154337) Sugiyamaella lignohabitans 30037174 AWJ20_4984 CDS RAD17 NC_031673.1 1154727 1155836 R Checkpoint protein; involved in the activation of the DNA damage and meiotic pachytene checkpoints; with Mec3p and Ddc1p, forms a clamp that is loaded onto partial duplex DNA; homolog of human and S. pombe Rad1 and U. maydis Rec1 proteins; GO_component: GO:0030896 - checkpoint clamp complex [Evidence IEA]; GO_component: GO:0030896 - checkpoint clamp complex [Evidence IDA] [PMID 12604797]; GO_component: GO:0030896 - checkpoint clamp complex [Evidence IDA] [PMID 9891048]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IPI] [PMID 11356855]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003684 - damaged DNA binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 12604797]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0004518 - nuclease activity [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IEA]; GO_process: GO:0000077 - DNA damage checkpoint [Evidence IMP] [PMID 9564050]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IEA]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 17624540]; GO_process: GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IEA]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IMP] [PMID 10511543]; Rad17p complement(1154727..1155836) Sugiyamaella lignohabitans 30037175 AWJ20_4985 CDS MON1 NC_031673.1 1157332 1159215 D Protein required for cvt-vesicle/autophagosome fusion with the vacuole; associates, as a complex with Ccz1p, with a perivacuolar compartment; potential Cdc28p substrate; GO_component: GO:0035658 - Mon1-Ccz1 complex [Evidence IPI] [PMID 20797862]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12387888]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 12364329]; GO_component: GO:0031902 - late endosome membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0032585 - multivesicular body membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006914 - autophagy [Evidence IEA]; GO_process: GO:0006914 - autophagy [Evidence IMP] [PMID 12387888]; GO_process: GO:0006623 - protein targeting to vacuole [Evidence IMP] [PMID 12134085]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0048278 - vesicle docking [Evidence IMP] [PMID 14662743]; Mon1p 1157332..1159215 Sugiyamaella lignohabitans 30037176 AWJ20_4986 CDS RVB2 NC_031673.1 1160635 1161999 D ATP-dependent DNA helicase, also known as reptin; member of the AAA+ and RuvB protein families, similar to Rvb1p; conserved component of multiple complexes including the INO80 complex, the Swr1 complex, and the R2TP complex (Rvb1-Rvb2-Tah1-Pih1); involved in multiple processes such as chromatin remodeling, box C/D snoRNP assembly, and RNA polymerase II assembly; GO_component: GO:0070209 - ASTRA complex [Evidence IDA] [PMID 19040720]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 10952318]; GO_component: GO:0031011 - Ino80 complex [Evidence IPI] [PMID 24034245]; GO_component: GO:0097255 - R2TP complex [Evidence IDA] [PMID 15766533]; GO_component: GO:0097255 - R2TP complex [Evidence IPI] [PMID 18268103]; GO_component: GO:0000812 - Swr1 complex [Evidence IPI] [PMID 14645854]; GO_component: GO:0000812 - Swr1 complex [Evidence IPI] [PMID 14690608]; GO_component: GO:0000812 - Swr1 complex [Evidence IDA] [PMID 16299513]; GO_component: GO:0005724 - nuclear telomeric heterochromatin [Evidence IDA] [PMID 22100294]; GO_component: GO:0005654 - nucleoplasm [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11604509]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 10952318]; GO_function: GO:0043140 - ATP-dependent 3'-5' DNA helicase activity [Evidence IDA] [PMID 20553504]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IEA]; GO_function: GO:0043141 - ATP-dependent 5'-3' DNA helicase activity [Evidence IDA] [PMID 18234224]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0000492 - box C/D snoRNP assembly [Evidence IMP] [PMID 11604509]; GO_process: GO:0000492 - box C/D snoRNP assembly [Evidence IMP] [PMID 18268103]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IPI] [PMID 14690608]; GO_process: GO:0043486 - histone exchange [Evidence IPI] [PMID 14645854]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11604509]; GO_process: GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11278922]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; RuvB family ATP-dependent DNA helicase reptin 1160635..1161999 Sugiyamaella lignohabitans 30037177 AWJ20_4987 CDS AWJ20_4987 NC_031673.1 1163439 1166153 R uncharacterized protein complement(1163439..1166153) Sugiyamaella lignohabitans 30037178 AWJ20_4988 CDS AWJ20_4988 NC_031673.1 1166461 1167495 R uncharacterized protein complement(1166461..1167495) Sugiyamaella lignohabitans 30037179 AWJ20_4989 CDS RBD2 NC_031673.1 1172739 1173266 D Possible rhomboid protease; has similarity to eukaryotic rhomboid proteases including Pcp1p; GO_component: GO:0030137 - COPI-coated vesicle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 14562095]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]; GO_function: GO:0008236 - serine-type peptidase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; Rbd2p 1172739..1173266 Sugiyamaella lignohabitans 30037180 AWJ20_4990 CDS MRPS17 NC_031673.1 1176584 1177312 D Mitochondrial ribosomal protein of the small subunit; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005763 - mitochondrial small ribosomal subunit [Evidence IPI] [PMID 12392552]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 24390141]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0019843 - rRNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IPI] [PMID 12392552]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 12392552]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 37S ribosomal protein MRPS17 1176584..1177312 Sugiyamaella lignohabitans 30037182 AWJ20_4991 CDS MSS4 NC_031673.1 1179577 1181421 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(1179577..1181421) Sugiyamaella lignohabitans 30037183 AWJ20_4992 CDS SCD5 NC_031673.1 1183139 1185460 D Protein required for normal actin organization and endocytosis; targeting subunit for protein phosphatase type 1; undergoes Crm1p-dependent nuclear-cytoplasmic shuttling; multicopy suppressor of clathrin deficiency; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 12181333]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 16251346]; GO_function: GO:0008157 - protein phosphatase 1 binding [Evidence IDA] [PMID 12356757]; GO_function: GO:0008157 - protein phosphatase 1 binding [Evidence IPI] [PMID 8754819]; GO_process: GO:0007015 - actin filament organization [Evidence IMP] [PMID 12356757]; GO_process: GO:0030866 - cortical actin cytoskeleton organization [Evidence IMP] [PMID 12181333]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 16251346]; GO_process: GO:0009306 - protein secretion [Evidence IGI,IMP] [PMID 8688556]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Scd5p 1183139..1185460 Sugiyamaella lignohabitans 30037184 AWJ20_4993 CDS MIF2 NC_031673.1 1185846 1187318 D Muscle M-line assembly protein unc-89 1185846..1187318 Sugiyamaella lignohabitans 30037185 AWJ20_4994 CDS ERG10 NC_031673.1 1187862 1189106 D Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase); cytosolic enzyme that transfers an acetyl group from one acetyl-CoA molecule to another, forming acetoacetyl-CoA; involved in the first step in mevalonate biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 5571830]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]; GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IDA] [PMID 7989303]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 200835]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; acetyl-CoA C-acetyltransferase 1187862..1189106 Sugiyamaella lignohabitans 30037186 AWJ20_4995 CDS AWJ20_4995 NC_031673.1 1189309 1189893 D uncharacterized protein 1189309..1189893 Sugiyamaella lignohabitans 30037187 AWJ20_4996 CDS EFR3 NC_031673.1 1190096 1193077 R Protein required for Stt4-containing PI kinase complex localization; required for Stt4-containing phosphoinositide (PI) kinase patch assembly at the plasma membrane; recruited to the plasma membrane via a conserved basic patch near its N-terminus; exhibits synthetic lethal genetic interactions with PHO85; has sequence similarity to the Drosophila rolling blackout (RBO) gene; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19075114]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0090002 - establishment of protein localization to plasma membrane [Evidence IMP] [PMID 19075114]; Efr3p complement(1190096..1193077) Sugiyamaella lignohabitans 30037188 AWJ20_4997 CDS AWJ20_4997 NC_031673.1 1194755 1196146 R uncharacterized protein complement(1194755..1196146) Sugiyamaella lignohabitans 30037189 AWJ20_4998 CDS MFG1 NC_031673.1 1197435 1199897 D Regulator of filamentous growth; interacts with FLO11 promoter and regulates FLO11 expression; binds to transcription factors Flo8p and Mss11p; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YDL233W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mfg1p 1197435..1199897 Sugiyamaella lignohabitans 30037190 AWJ20_4999 CDS NOC4 NC_031673.1 1201849 1203513 D Nucleolar protein; forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0030692 - Noc4p-Nop14p complex [Evidence IPI] [PMID 12446671]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12446671]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15590835]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 15590835]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 12446671]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 12446671]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA,IEA]; Noc4p 1201849..1203513 Sugiyamaella lignohabitans 30037191 AWJ20_5000 CDS TPC1 NC_031673.1 1203669 1204712 R Mitochondrial membrane transporter; mediates uptake of the essential cofactor thiamine pyrophosphate (ThPP) into mitochondria; expression appears to be regulated by carbon source; member of the mitochondrial carrier family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031305 - integral component of mitochondrial inner membrane [Evidence IDA] [PMID 12411483]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0015234 - thiamine transmembrane transporter activity [Evidence IDA] [PMID 12411483]; GO_process: GO:0030974 - thiamine pyrophosphate transport [Evidence IDA,IMP] [PMID 12411483]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tpc1p complement(1203669..1204712) Sugiyamaella lignohabitans 30037195 AWJ20_5001 CDS SLP1 NC_031673.1 1205530 1208049 D Glycosylated integral ER membrane hypothetical protein; forms an ER-membrane associated protein complex with Emp65p; member of the SUN-like family of proteins; genetic interactions suggest a role in folding of ER membrane proteins; required for nuclear envelope localization of Mps3p; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISM] [PMID 23275891]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IGI] [PMID 19325107]; Slp1p 1205530..1208049 Sugiyamaella lignohabitans 30037196 AWJ20_5002 CDS SPF1 NC_031673.1 1208183 1211647 R P-type ATPase, ion transporter of the ER membrane; required to maintain normal lipid composition of intracellular compartments and proper targeting of mitochondrial outer membrane tail-anchored proteins; involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1; GO_component: GO:0005801 - cis-Golgi network [Evidence IDA] [PMID 11791712]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 12058017]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 22745129]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IDA] [PMID 12058017]; GO_function: GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IDA] [PMID 22745129]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0006874 - cellular calcium ion homeostasis [Evidence IMP] [PMID 12058017]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IMP] [PMID 24392018]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055092 - sterol homeostasis [Evidence IMP] [PMID 22918956]; GO_process: GO:0055085 - transmembrane transport [Evidence IMP] [PMID 12058017]; ion-transporting P-type ATPase SPF1 complement(1208183..1211647) Sugiyamaella lignohabitans 30037197 AWJ20_5003 CDS AWJ20_5003 NC_031673.1 1212590 1213033 D uncharacterized protein 1212590..1213033 Sugiyamaella lignohabitans 30037198 AWJ20_5004 CDS POP7 NC_031673.1 1214219 1214854 D Subunit of both RNase MRP and nuclear RNase P; forms a soluble heterodimer with Pop6p that binds P3 domain of RNase MRP and RNase P RNAs; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs; GO_component: GO:0005655 - nucleolar ribonuclease P complex [Evidence IDA] [PMID 9618478]; GO_component: GO:0005655 - nucleolar ribonuclease P complex [Evidence IDA] [PMID 9620854]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IPI] [PMID 17881380]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IMP] [PMID 9618478]; GO_component: GO:0000172 - ribonuclease MRP complex [Evidence IDA] [PMID 9620854]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000171 - ribonuclease MRP activity [Evidence IDA,IMP] [PMID 9620854]; GO_function: GO:0004526 - ribonuclease P activity [Evidence IEA]; GO_function: GO:0004526 - ribonuclease P activity [Evidence IDA,IMP] [PMID 9620854]; GO_process: GO:0090501 - RNA phosphodiester bond hydrolysis [Evidence IEA]; GO_process: GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic [Evidence IEA]; GO_process: GO:0034965 - intronic box C/D snoRNA processing [Evidence IDA] [PMID 18713869]; GO_process: GO:0006379 - mRNA cleavage [Evidence IDA] [PMID 14729943]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 9618478]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 9620854]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 9618478]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 9620854]; Pop7p 1214219..1214854 Sugiyamaella lignohabitans 30037199 AWJ20_5005 CDS AWJ20_5005 NC_031673.1 1217159 1219153 D XP_962611|transcriptional activator xlnR [Neurospora crassa OR74A]; transcriptional activator xlnR 1217159..1219153 Sugiyamaella lignohabitans 30037200 AWJ20_5006 CDS AWJ20_5006 NC_031673.1 1219535 1220914 D uncharacterized protein 1219535..1220914 Sugiyamaella lignohabitans 30037201 AWJ20_5007 CDS AWJ20_5007 NC_031673.1 1220963 1223227 D uncharacterized protein 1220963..1223227 Sugiyamaella lignohabitans 30037202 AWJ20_5008 CDS AWJ20_5008 NC_031673.1 1223272 1224567 R uncharacterized protein complement(1223272..1224567) Sugiyamaella lignohabitans 30037203 AWJ20_5009 CDS RPD3 NC_031673.1 1226117 1227433 R histone deacetylase RPD3 complement(1226117..1227433) Sugiyamaella lignohabitans 30037204 AWJ20_5010 CDS AWJ20_5010 NC_031673.1 1228442 1228822 D uncharacterized protein 1228442..1228822 Sugiyamaella lignohabitans 30037206 AWJ20_5011 CDS SEC4 NC_031673.1 1229137 1229757 R Rab family GTPase; essential for vesicle-mediated exocytic secretion and autophagy; associates with the exocyst component Sec15p and may regulate polarized delivery of transport vesicles to the exocyst at the plasma membrane; GO_component: GO:0030478 - actin cap [Evidence TAS] [PMID 10652251]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 9128251]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0030133 - transport vesicle [Evidence TAS] [PMID 12665530]; GO_component: GO:0030133 - transport vesicle [Evidence IDA] [PMID 23079598]; GO_component: GO:0030658 - transport vesicle membrane [Evidence IEA]; GO_component: GO:0031982 - vesicle [Evidence IDA] [PMID 12456647]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 2111819]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 2111819]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006893 - Golgi to plasma membrane transport [Evidence IMP] [PMID 9017592]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IMP] [PMID 9425151]; GO_process: GO:0006914 - autophagy [Evidence IGI,IMP] [PMID 20444978]; GO_process: GO:0007121 - bipolar cellular bud site selection [Evidence TAS] [PMID 10652251]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0006887 - exocytosis [Evidence IDA] [PMID 15772160]; GO_process: GO:0007107 - membrane addition at site of cytokinesis [Evidence IEP,IGI,IMP] [PMID 12456647]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]; GO_process: GO:0007264 - small GTPase mediated signal transduction [Evidence TAS] [PMID 10652251]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0006906 - vesicle fusion [Evidence IMP] [PMID 9017592]; Rab family GTPase SEC4 complement(1229137..1229757) Sugiyamaella lignohabitans 30037207 AWJ20_5012 CDS FRS1 NC_031673.1 1231035 1232819 D Beta subunit of cytoplasmic phenylalanyl-tRNA synthetase; forms a tetramer with Frs2p to generate active enzyme; able to hydrolyze mis-aminoacylated tRNA-Phe, which could contribute to translational quality control; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IDA] [PMID 3049607]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 16162501]; GO_function: GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IDA] [PMID 166841]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IDA] [PMID 16162501]; GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IDA] [PMID 166841]; GO_process: GO:0006412 - translation [Evidence IEA]; phenylalanine--tRNA ligase subunit beta 1231035..1232819 Sugiyamaella lignohabitans 30037208 AWJ20_5013 CDS AWJ20_5013 NC_031673.1 1233180 1233944 D uncharacterized protein 1233180..1233944 Sugiyamaella lignohabitans 30037209 AWJ20_5014 CDS AWJ20_5014 NC_031673.1 1233984 1236176 R uncharacterized protein complement(1233984..1236176) Sugiyamaella lignohabitans 30037210 AWJ20_5015 CDS SBA1 NC_031673.1 1238407 1238793 D Co-chaperone that binds and regulates Hsp90 family chaperones; plays a role in determining prion variants; important for pp60v-src activity in yeast; homologous to the mammalian p23 proteins, and like p23 can regulate telomerase activity; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10207098]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10207098]; GO_function: GO:0051087 - chaperone binding [Evidence IMP,IPI] [PMID 9632755]; GO_process: GO:0043392 - negative regulation of DNA binding [Evidence IDA] [PMID 23022381]; GO_process: GO:0032212 - positive regulation of telomere maintenance via telomerase [Evidence IDA,IMP] [PMID 17389357]; GO_process: GO:0006457 - protein folding [Evidence IMP,IPI] [PMID 9632755]; GO_process: GO:0051972 - regulation of telomerase activity [Evidence IDA,IMP] [PMID 17389357]; Sba1p 1238407..1238793 Sugiyamaella lignohabitans 30037211 AWJ20_5016 CDS TMA46 NC_031673.1 1239003 1240046 R hypothetical protein that associates with translating ribosomes; interacts with GTPase Rbg1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10684247]; GO_component: GO:0042788 - polysomal ribosome [Evidence IDA] [PMID 21076151]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IGI] [PMID 21076151]; Tma46p complement(1239003..1240046) Sugiyamaella lignohabitans 30037212 AWJ20_5017 CDS SWD3 NC_031673.1 1240271 1241281 D Essential subunit of the COMPASS (Set1C) complex; COMPASS methylates histone H3 on lysine 4 and is required in transcriptional silencing near telomeres; WD40 beta propeller superfamily member and ortholog of mammalian WDR5; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11687631]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11742990]; GO_component: GO:0048188 - Set1C/COMPASS complex [Evidence IPI] [PMID 11752412]; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA] [PMID 11742990]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IMP] [PMID 11752412]; GO_function: GO:0042800 - histone methyltransferase activity (H3-K4 specific) [Evidence IDA,IMP] [PMID 11805083]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11687631]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11752412]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 11805083]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA] [PMID 11742990]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA,IMP] [PMID 11752412]; GO_process: GO:0051568 - histone H3-K4 methylation [Evidence IDA,IMP] [PMID 11805083]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 11742990]; Swd3p 1240271..1241281 Sugiyamaella lignohabitans 30037213 AWJ20_5018 CDS AWJ20_5018 NC_031673.1 1241368 1242987 R uncharacterized protein complement(1241368..1242987) Sugiyamaella lignohabitans 30037214 AWJ20_5019 CDS AWJ20_5019 NC_031673.1 1248508 1249443 D uncharacterized protein 1248508..1249443 Sugiyamaella lignohabitans 30037215 AWJ20_5020 CDS AMD2 NC_031673.1 1249516 1251216 R Putative amidase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004040 - amidase activity [Evidence IEA]; GO_function: GO:0004040 - amidase activity [Evidence ISS] [PMID 2263500]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; Amd2p complement(1249516..1251216) Sugiyamaella lignohabitans 30037217 AWJ20_5021 CDS HEM13 NC_031673.1 1252932 1253921 R Coproporphyrinogen III oxidase; an oxygen requiring enzyme that catalyzes the sixth step in the heme biosynthetic pathway; transcription is repressed by oxygen and heme (via Rox1p and Hap1p); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 3516695]; GO_function: GO:0004109 - coproporphyrinogen oxidase activity [Evidence IEA,IEA]; GO_function: GO:0004109 - coproporphyrinogen oxidase activity [Evidence IMP] [PMID 2838478]; GO_function: GO:0004109 - coproporphyrinogen oxidase activity [Evidence IDA] [PMID 3516695]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IEA]; GO_process: GO:0006783 - heme biosynthetic process [Evidence IMP] [PMID 7035824]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; coproporphyrinogen oxidase complement(1252932..1253921) Sugiyamaella lignohabitans 30037218 AWJ20_5022 CDS BMT5 NC_031673.1 1254180 1255046 D Methyltransferase required for m3U2634 methylation of the 25S rRNA; S-adenosylmethionine-dependent; associates with precursors of the 60S ribosomal subunit; predicted to be involved in ribosome biogenesis; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 24335083]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IDA,ISS] [PMID 21858014]; GO_function: GO:0070042 - rRNA (uridine-N3-)-methyltransferase activity [Evidence IMP] [PMID 24335083]; GO_process: GO:0032259 - methylation [Evidence IC] [PMID 21858014]; GO_process: GO:0070475 - rRNA base methylation [Evidence IMP] [PMID 24335083]; Bmt5p 1254180..1255046 Sugiyamaella lignohabitans 30037219 AWJ20_5023 CDS FYV10 NC_031673.1 1255304 1256500 R Subunit of GID complex; involved in proteasome-dependent catabolite inactivation of gluconeogenic enzymes FBPase, PEPCK, and c-MDH; forms dimer with Rmd5p that is then recruited to GID Complex by Gid8p; contains a degenerate RING finger motif needed for GID complex ubiquitin ligase activity in vivo, as well as CTLH and CRA domains; plays role in anti-apoptosis; required for survival upon exposure to K1 killer toxin; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 16872538]; GO_component: GO:0034657 - GID complex [Evidence IDA] [PMID 18508925]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP] [PMID 22044534]; GO_process: GO:0043066 - negative regulation of apoptotic process [Evidence IMP] [PMID 18355271]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; glucose-induced degradation complex subunit FYV10 complement(1255304..1256500) Sugiyamaella lignohabitans 30037220 AWJ20_5024 CDS COX15 NC_031673.1 1257027 1258418 D Protein required for the hydroxylation of heme O to form heme A; heme A is an essential prosthetic group for cytochrome c oxidase; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 9228094]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0016653 - oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor [Evidence IMP] [PMID 11248251]; GO_function: GO:0016653 - oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor [Evidence IGI] [PMID 11788607]; GO_function: GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]; GO_process: GO:0006784 - heme a biosynthetic process [Evidence IEA]; GO_process: GO:0006784 - heme a biosynthetic process [Evidence IGI,IMP] [PMID 11788607]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Cox15p 1257027..1258418 Sugiyamaella lignohabitans 30037221 AWJ20_5025 CDS EMP65 NC_031673.1 1258569 1260542 R ER membrane hypothetical protein; forms an ER-membrane associated protein complex with Slp1p; identified along with SLP1 in a screen for mutants defective in the unfolded protein response (UPR); proposed to function in the folding of integral membrane proteins; interacts genetically with MPS1; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA,ISM] [PMID 23275891]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0034975 - protein folding in endoplasmic reticulum [Evidence IGI] [PMID 19325107]; Emp65p complement(1258569..1260542) Sugiyamaella lignohabitans 30037222 AWJ20_5026 CDS FET3 NC_031673.1 1261350 1263032 D ferroxidase FET3 1261350..1263032 Sugiyamaella lignohabitans 30037223 AWJ20_5027 CDS NAB2 NC_031673.1 1263683 1265161 R mRNA-binding protein NAB2 complement(1263683..1265161) Sugiyamaella lignohabitans 30037224 AWJ20_5028 CDS AWJ20_5028 NC_031673.1 1269076 1269888 R uncharacterized protein complement(1269076..1269888) Sugiyamaella lignohabitans 30037225 AWJ20_5029 CDS HSP31 NC_031673.1 1271912 1272628 D Methylglyoxalase that converts methylglyoxal to D-lactate; involved in oxidative stress resistance, diauxic shift, and stationary phase survival; has similarity to E. coli Hsp31 and C. albicans Glx3p; member of the DJ-1/ThiJ/PfpI superfamily, which includes human DJ-1 involved in Parkinson's disease and cancer; exists as a dimer and contains a putative metal-binding site; protein abundance increases in response to DNA replication stress; GO_component: GO:0000932 - cytoplasmic mRNA processing body [Evidence IDA] [PMID 24706893]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 24706893]; GO_function: GO:0019172 - glyoxalase III activity [Evidence IDA] [PMID 24302734]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0031669 - cellular response to nutrient levels [Evidence IMP] [PMID 24706893]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 17395014]; GO_process: GO:0019243 - methylglyoxal catabolic process to D-lactate [Evidence IDA] [PMID 24302734]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp31p 1271912..1272628 Sugiyamaella lignohabitans 30037226 AWJ20_5030 CDS MRS2 NC_031673.1 1273705 1275372 D Mitochondrial inner membrane Mg(2+) channel; required for maintenance of intramitochondrial Mg(2+) concentrations at the correct level to support splicing of group II introns; similar to bacterial CorA; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10400670]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IGI,IMP,ISS] [PMID 10400670]; GO_function: GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IDA] [PMID 12628916]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015693 - magnesium ion transport [Evidence IEA]; GO_process: GO:0045016 - mitochondrial magnesium ion transport [Evidence IGI,IMP,ISS] [PMID 10400670]; GO_process: GO:0045016 - mitochondrial magnesium ion transport [Evidence IDA] [PMID 12628916]; GO_process: GO:0006810 - transport [Evidence IEA]; Mrs2p 1273705..1275372 Sugiyamaella lignohabitans 30037228 AWJ20_5031 CDS IPL1 NC_031673.1 1276971 1277927 R Aurora kinase of conserved chromosomal passenger complex; mediates release on mono-oriented kinetochores from microtubules in meiosis I, also release of kinetochores from cluster at SPBs at meiosis exit; helps maintain condensed chromosomes during anaphase, early telophase; required for SPB cohesion and prevention of multipolar spindle formation; Iocalizes to nuclear foci that diffuse upon DNA replication stress; required for inhibition of karyopherin Pse1p upon SAC arrest; GO_component: GO:0005694 - chromosome [Evidence IEA]; GO_component: GO:0032133 - chromosome passenger complex [Evidence IDA] [PMID 19158380]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IEA]; GO_component: GO:0000777 - condensed chromosome kinetochore [Evidence IEA]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 11511347]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IDA] [PMID 12566427]; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0000776 - kinetochore [Evidence IEA]; GO_component: GO:0005828 - kinetochore microtubule [Evidence IDA] [PMID 11724818]; GO_component: GO:0005874 - microtubule [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005819 - spindle [Evidence IEA]; GO_component: GO:0005819 - spindle [Evidence IDA] [PMID 12566427]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 11511347]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 11724818]; GO_component: GO:0051233 - spindle midzone [Evidence IDA] [PMID 12566427]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 10072382]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16143104]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 23142046]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0008608 - attachment of spindle microtubules to kinetochore [Evidence IMP] [PMID 10072382]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 8293973]; GO_process: GO:0045143 - homologous chromosome segregation [Evidence IMP] [PMID 17289568]; GO_process: GO:0045144 - meiotic sister chromatid segregation [Evidence IMP] [PMID 17289568]; GO_process: GO:0045144 - meiotic sister chromatid segregation [Evidence IMP] [PMID 17371833]; GO_process: GO:0044774 - mitotic DNA integrity checkpoint [Evidence IGI] [PMID 16651657]; GO_process: GO:0051228 - mitotic spindle disassembly [Evidence IMP] [PMID 12566427]; GO_process: GO:1901925 - negative regulation of protein import into nucleus during spindle assembly checkpoint [Evidence IMP] [PMID 23177738]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0090232 - positive regulation of spindle checkpoint [Evidence IMP] [PMID 16327780]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA,IMP] [PMID 17504936]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 23142046]; GO_process: GO:0032465 - regulation of cytokinesis [Evidence IMP] [PMID 16615892]; aurora kinase complement(1276971..1277927) Sugiyamaella lignohabitans 30037229 AWJ20_5032 CDS AWJ20_5032 NC_031673.1 1278832 1281627 D DuF1740 family protein 1278832..1281627 Sugiyamaella lignohabitans 30037230 AWJ20_5033 CDS PCS60 NC_031673.1 1281796 1283331 R Oxalyl-CoA synthetase; capable of catalyzing conversion of oxalate to oxalyl-CoA; catalyzes first step in pathway of oxalate degradation that functions to protect yeast from inhibitory effects of oxalate; peroxisomal protein that binds mRNA; localizes to both peroxisomal peripheral membrane and matrix, expression is highly inducible by oleic acid; similar to E. coli long chain acyl-CoA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IEA]; GO_component: GO:0005782 - peroxisomal matrix [Evidence IDA] [PMID 8841414]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IEA]; GO_component: GO:0005778 - peroxisomal membrane [Evidence IDA] [PMID 8841414]; GO_component: GO:0005777 - peroxisome [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 20844764]; GO_function: GO:0050203 - oxalate-CoA ligase activity [Evidence IDA,IMP] [PMID 24291261]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0033611 - oxalate catabolic process [Evidence IDA,IMP] [PMID 24291261]; Pcs60p complement(1281796..1283331) Sugiyamaella lignohabitans 30037231 AWJ20_5034 CDS ISU1 NC_031673.1 1284960 1285469 D Conserved protein of the mitochondrial matrix; performs a scaffolding function during assembly of iron-sulfur clusters, interacts physically and functionally with yeast frataxin (Yfh1p); isu1 isu2 double mutant is inviable; ISU1 has a paralog, ISU2, that arose from the whole genome duplication; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 10468587]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 15143178]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO_function: GO:0008198 - ferrous iron binding [Evidence IDA] [PMID 12970193]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0006879 - cellular iron ion homeostasis [Evidence IMP,ISS] [PMID 10468587]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP,ISS] [PMID 10588895]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IGI] [PMID 12970193]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 15143178]; GO_process: GO:0002098 - tRNA wobble uridine modification [Evidence IGI] [PMID 17283054]; iron-binding protein ISU1 1284960..1285469 Sugiyamaella lignohabitans 30037232 AWJ20_5035 CDS CTK2 NC_031673.1 1287201 1287989 D Beta subunit of C-terminal domain kinase I (CTDK-I); which phosphorylates both RNA pol II subunit Rpo21p to affect transcription and pre-mRNA 3' end processing, and ribosomal protein Rps2p to increase translational fidelity; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 15520468]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 15520468]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_component: GO:0070692 - trimeric positive transcription elongation factor complex b [Evidence IDA] [PMID 7565723]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0031124 - mRNA 3'-end processing [Evidence IC] [PMID 11118453]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0032786 - positive regulation of DNA-templated transcription, elongation [Evidence IDA] [PMID 9110987]; GO_process: GO:0045943 - positive regulation of transcription from RNA polymerase I promoter [Evidence IMP] [PMID 15520468]; GO_process: GO:0045903 - positive regulation of translational fidelity [Evidence IPI] [PMID 17545469]; GO_process: GO:0006468 - protein phosphorylation [Evidence IPI] [PMID 7565723]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ctk2p 1287201..1287989 Sugiyamaella lignohabitans 30037233 AWJ20_5036 CDS UBP14 NC_031673.1 1288165 1290303 R Ubiquitin-specific protease; specifically disassembles unanchored ubiquitin chains; involved in fructose-1,6-bisphosphatase (Fbp1p) degradation; similar to human isopeptidase T; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 8982460]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008242 - omega peptidase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 19410548]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0045721 - negative regulation of gluconeogenesis [Evidence IMP] [PMID 12686616]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 12686616]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp14p complement(1288165..1290303) Sugiyamaella lignohabitans 30037234 AWJ20_5037 CDS EHD3 NC_031673.1 1291121 1292614 R 3-hydroxyisobutyryl-CoA hydrolase; member of a family of enoyl-CoA hydratase/isomerases; non-tagged protein is detected in highly purified mitochondria in high-throughput studies; phosphorylated; mutation affects fluid-phase endocytosis; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 17054397]; GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity [Evidence IEA]; GO_function: GO:0003860 - 3-hydroxyisobutyryl-CoA hydrolase activity [Evidence IDA,ISS] [PMID 12697341]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0009083 - branched-chain amino acid catabolic process [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IMP] [PMID 12697341]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006574 - valine catabolic process [Evidence IEA]; Ehd3p complement(1291121..1292614) Sugiyamaella lignohabitans 30037235 AWJ20_5038 CDS FAP7 NC_031673.1 1295898 1296617 D Essential NTPase required for small ribosome subunit synthesis; mediates processing of the 20S pre-rRNA at site D in the cytoplasm but associates only transiently with 43S preribosomes via Rps14p, may be the endonuclease for site D; depletion leads to accumulation of pre-40S ribosomes in 80S-like ribosomes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 16287850]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10692169]; GO_component: GO:0030684 - preribosome [Evidence IPI] [PMID 16287850]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0004017 - adenylate kinase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IMP,ISS] [PMID 16287850]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 10692169]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 12837249]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP,IPI] [PMID 16287850]; GO_process: GO:0046939 - nucleotide phosphorylation [Evidence IEA,IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IMP] [PMID 16287850]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Fap7p join(1295898..1295966,1296240..1296617) Sugiyamaella lignohabitans 30037236 AWJ20_5039 CDS BNA5 NC_031673.1 1296725 1298149 R Kynureninase; required for the de novo biosynthesis of NAD from tryptophan via kynurenine; expression regulated by Hst1p; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0030429 - kynureninase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0030429 - kynureninase activity [Evidence IMP] [PMID 12062417]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA,IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IEA]; GO_process: GO:0034354 - 'de novo' NAD biosynthetic process from tryptophan [Evidence IGI] [PMID 12062417]; GO_process: GO:0097053 - L-kynurenine catabolic process [Evidence IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0043420 - anthranilate metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0019805 - quinolinate biosynthetic process [Evidence IEA]; GO_process: GO:0006569 - tryptophan catabolic process [Evidence IEA,IEA]; kynureninase complement(1296725..1298149) Sugiyamaella lignohabitans 30037237 AWJ20_5040 CDS GLT1 NC_031673.1 1298629 1305069 R NAD(+)-dependent glutamate synthase (GOGAT); synthesizes glutamate from glutamine and alpha-ketoglutarate; with Gln1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source; assembles into filaments as cells approach stationary phase and under cytosolic acidification and starvation conditions; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051538 - 3 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0010181 - FMN binding [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016040 - glutamate synthase (NADH) activity [Evidence IEA,IEA]; GO_function: GO:0016040 - glutamate synthase (NADH) activity [Evidence IDA,IMP] [PMID 7836314]; GO_function: GO:0015930 - glutamate synthase activity [Evidence IEA]; GO_function: GO:0045181 - glutamate synthase activity, NAD(P)H as acceptor [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors [Evidence IEA]; GO_function: GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0097054 - L-glutamate biosynthetic process [Evidence IEA]; GO_process: GO:0019676 - ammonia assimilation cycle [Evidence IEP] [PMID 11356843]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006537 - glutamate biosynthetic process [Evidence IEP] [PMID 9657994]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA,IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glutamate synthase (NADH) complement(1298629..1305069) Sugiyamaella lignohabitans 30037239 AWJ20_5041 CDS MSS4 NC_031673.1 1309311 1311152 R Phosphatidylinositol-4-phosphate 5-kinase; involved in actin cytoskeleton organization and cell morphogenesis; multicopy suppressor of stt4 mutation; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9624177]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IEA]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624177]; GO_function: GO:0016308 - 1-phosphatidylinositol-4-phosphate 5-kinase activity [Evidence IDA] [PMID 9624178]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016307 - phosphatidylinositol phosphate kinase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0031321 - ascospore-type prospore assembly [Evidence IGI] [PMID 19502581]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IEA]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624177]; GO_process: GO:0046854 - phosphatidylinositol phosphorylation [Evidence IDA] [PMID 9624178]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; 1-phosphatidylinositol-4-phosphate 5-kinase complement(1309311..1311152) Sugiyamaella lignohabitans 30037240 AWJ20_5042 CDS AWJ20_5042 NC_031673.1 1319359 1320528 R uncharacterized protein complement(1319359..1320528) Sugiyamaella lignohabitans 30037241 AWJ20_5043 CDS TIF34 NC_031673.1 1327063 1328058 R eIF3i subunit of the eukaryotic translation initiation factor 3 (eIF3); subunit of the core complex of eIF3; essential for translation; stimulates rate of ribosomal scanning during translation reinitiation; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA,IEA]; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IEA,IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9660829]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9671501]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 9671501]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0002188 - translation reinitiation [Evidence IMP] [PMID 20679478]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence IDA] [PMID 9671501]; translation initiation factor eIF3 subunit i complement(1327063..1328058) Sugiyamaella lignohabitans 30037242 AWJ20_5044 CDS AWJ20_5044 NC_031673.1 1328507 1329097 R Putative carboxymethylenebutenolidase; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YDL086W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008806 - carboxymethylenebutenolidase activity [Evidence IEA]; GO_function: GO:0008806 - carboxymethylenebutenolidase activity [Evidence ISS] [PMID 10592175]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; carboxymethylenebutenolidase complement(1328507..1329097) Sugiyamaella lignohabitans 30037243 AWJ20_5045 CDS POL92 NC_031673.1 1330201 1333344 R allele of CaO19.8194; polyprotein of L1-like non-LTR retrotransposon Zorro 3 complement(1330201..1333344) Sugiyamaella lignohabitans 30037244 AWJ20_5047 CDS MNN10 NC_031673.1 1336069 1337496 D Subunit of a Golgi mannosyltransferase complex; complex mediates elongation of the polysaccharide mannan backbone; membrane protein of the mannosyltransferase family; other members of the complex are Anp1p, Mnn9p, Mnn11p, and Hoc1p; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:0000136 - alpha-1,6-mannosyltransferase complex [Evidence IDA] [PMID 10037752]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000009 - alpha-1,6-mannosyltransferase activity [Evidence IDA] [PMID 10037752]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_function: GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IMP] [PMID 16034811]; GO_process: GO:0000032 - cell wall mannoprotein biosynthetic process [Evidence IMP] [PMID 10037752]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 23210626]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 8991513]; Mnn10p 1336069..1337496 Sugiyamaella lignohabitans 30037246 AWJ20_5048 CDS AWJ20_5048 NC_031673.1 1337529 1339802 R uncharacterized protein complement(1337529..1339802) Sugiyamaella lignohabitans 30037247 AWJ20_5049 CDS AIR1 NC_031673.1 1340186 1340890 R Zinc knuckle protein; involved in nuclear RNA processing and degradation as a component of the TRAMP complex; stimulates the poly(A) polymerase activity of Pap2p in vitro; AIR1 has a paralog, AIR2, that arose from the whole genome duplication; although Air1p and Air2p are homologous TRAMP subunits, they have nonredundant roles in regulation of substrate specificity of the exosome; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15828860]; GO_component: GO:0031499 - TRAMP complex [Evidence IDA] [PMID 15935759]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11489916]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0004652 - polynucleotide adenylyltransferase activity [Evidence IDA,IGI] [PMID 15935759]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0043629 - ncRNA polyadenylation [Evidence IDA] [PMID 15828860]; GO_process: GO:0071031 - nuclear mRNA surveillance of mRNA 3'-end processing [Evidence IGI] [PMID 17410208]; GO_process: GO:0071039 - nuclear polyadenylation-dependent CUT catabolic process [Evidence IGI] [PMID 18591258]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IGI] [PMID 15935758]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IGI] [PMID 18007593]; GO_process: GO:0071037 - nuclear polyadenylation-dependent snRNA catabolic process [Evidence IGI] [PMID 15935758]; GO_process: GO:0071036 - nuclear polyadenylation-dependent snoRNA catabolic process [Evidence IGI] [PMID 15935758]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; Air1p complement(1340186..1340890) Sugiyamaella lignohabitans 30037248 AWJ20_5050 CDS ITR2 NC_031673.1 1342494 1344104 R Myo-inositol transporter; member of the sugar transporter superfamily; expressed constitutively; ITR2 has a paralog, ITR1, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 2040626]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16233524]; GO_function: GO:0005365 - myo-inositol transmembrane transporter activity [Evidence IMP,ISS] [PMID 2040626]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0015798 - myo-inositol transport [Evidence IMP] [PMID 2040626]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; myo-inositol transporter ITR2 complement(1342494..1344104) Sugiyamaella lignohabitans 30037250 AWJ20_5051 CDS AWJ20_5051 NC_031673.1 1345381 1346190 R uncharacterized protein complement(1345381..1346190) Sugiyamaella lignohabitans 30037251 AWJ20_5052 CDS YIM1 NC_031673.1 1346911 1347990 R hypothetical protein; null mutant displays sensitivity to DNA damaging agents; may have a role in lipid metabolism, based on localization to lipid droplets; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IMP] [PMID 12077312]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; Yim1p complement(1346911..1347990) Sugiyamaella lignohabitans 30037252 AWJ20_5053 CDS RPS8B NC_031673.1 1348734 1349327 R Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S8, no bacterial homolog; RPS8B has a paralog, RPS8A, that arose from the whole genome duplication; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 18782943]; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 18782943]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 18782943]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IGI] [PMID 16246728]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IBA]; ribosomal 40S subunit protein S8B complement(1348734..1349327) Sugiyamaella lignohabitans 30037253 AWJ20_5054 CDS TUL1 NC_031673.1 1350308 1353286 R Subunit of the DSC ubiquitin ligase complex; golgi-localized RING-finger ubiquitin ligase (E3) involved in sorting polar transmembrane domain containing membrane proteins to multivesicular bodies for delivery to the vacuole; proposed involvement in the quality control of misfolded TMD containing proteins; ortholog of fission yeast dsc1; GO_component: GO:0044695 - Dsc E3 ubiquitin ligase complex [Evidence IDA] [PMID 22681890]; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 11788821]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IMP,ISS] [PMID 11788821]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IMP] [PMID 11788821]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IMP] [PMID 11788821]; ubiquitin-protein ligase TUL1 complement(1350308..1353286) Sugiyamaella lignohabitans 30037254 AWJ20_5055 CDS AWJ20_5055 NC_031673.1 1355432 1355791 R mitochondrial iron ion transporter (predicted) complement(1355432..1355791) Sugiyamaella lignohabitans 30037255 AWJ20_5056 CDS AWJ20_5056 NC_031673.1 1356622 1357437 D uncharacterized protein 1356622..1357437 Sugiyamaella lignohabitans 30037256 AWJ20_5057 CDS ISM1 NC_031673.1 1357696 1358889 R Mitochondrial isoleucyl-tRNA synthetase; null mutant is deficient in respiratory growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 7607232]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence ISA] [PMID 7607232]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence ISA] [PMID 7607232]; GO_process: GO:0070152 - mitochondrial isoleucyl-tRNA aminoacylation [Evidence IC] [PMID 7607232]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 7607232]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; isoleucine--tRNA ligase ISM1 complement(1357696..1358889) Sugiyamaella lignohabitans 30037257 AWJ20_5058 CDS ISM1 NC_031673.1 1358988 1360775 R Mitochondrial isoleucyl-tRNA synthetase; null mutant is deficient in respiratory growth; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 7607232]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004822 - isoleucine-tRNA ligase activity [Evidence ISA] [PMID 7607232]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence ISA] [PMID 7607232]; GO_process: GO:0070152 - mitochondrial isoleucyl-tRNA aminoacylation [Evidence IC] [PMID 7607232]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 7607232]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; isoleucine--tRNA ligase ISM1 complement(1358988..1360775) Sugiyamaella lignohabitans 30037258 AWJ20_5059 CDS MRPL11 NC_031673.1 1361102 1361659 D Mitochondrial ribosomal protein of the large subunit; localizes to vacuole in response to H2O2; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; mitochondrial 54S ribosomal protein YmL11 1361102..1361659 Sugiyamaella lignohabitans 30037259 AWJ20_5061 CDS AWJ20_5061 NC_031673.1 1364424 1364921 R uncharacterized protein complement(1364424..1364921) Sugiyamaella lignohabitans 30037262 AWJ20_5062 CDS DUG3 NC_031673.1 1365514 1365948 R Component of glutamine amidotransferase (GATase II); forms a complex with Dug2p to degrade glutathione (GSH) and other peptides containing a gamma-glu-X bond in an alternative pathway to GSH degradation by gamma-glutamyl transpeptidase (Ecm38p); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 17179087]; GO_function: GO:0004044 - amidophosphoribosyltransferase activity [Evidence ISS] [PMID 17179087]; GO_function: GO:0003840 - gamma-glutamyltransferase activity [Evidence IDA,IMP] [PMID 22277648]; GO_function: GO:0008242 - omega peptidase activity [Evidence IGI] [PMID 17179087]; GO_function: GO:0008233 - peptidase activity [Evidence IGI] [PMID 17179087]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006541 - glutamine metabolic process [Evidence IEA]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IMP] [PMID 17179087]; GO_process: GO:0006751 - glutathione catabolic process [Evidence IDA,IMP] [PMID 22277648]; glutamine amidotransferase subunit DUG3 complement(1365514..1365948) Sugiyamaella lignohabitans 30037263 AWJ20_5063 CDS AWJ20_5063 NC_031673.1 1368489 1369106 D uncharacterized protein 1368489..1369106 Sugiyamaella lignohabitans 30037264 AWJ20_5064 CDS ECM2 NC_031673.1 1369418 1370608 D Pre-mRNA splicing factor; facilitates the cooperative formation of U2/U6 helix II in association with stem II in the spliceosome, function may be regulated by Slu7p; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005681 - spliceosomal complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IGI] [PMID 9528778]; Ecm2p 1369418..1370608 Sugiyamaella lignohabitans 30037265 AWJ20_5065 CDS NFI1 NC_031673.1 1376232 1379345 D SUMO E3 ligase; catalyzes sumoylation of Yku70p/Yku80p and Sir4p promoting chromatin anchoring; DNA-bound form catalyzes a DNA-damaged triggered sumoylation wave resulting in multisite modification of several DNA repair proteins, enhancing interactions between these proteins and accelerating repair; promotes telomere anchoring to the nuclear envelope; involved in maintenance of proper telomere length; NFI1 has a paralog, SIZ1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 16204216]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IDA] [PMID 12761287]; GO_function: GO:0019789 - SUMO ligase activity [Evidence IMP] [PMID 23122649]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA,IMP] [PMID 23122649]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence TAS] [PMID 12402242]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 16204216]; GO_process: GO:0060969 - negative regulation of gene silencing [Evidence IMP] [PMID 22345352]; GO_process: GO:0016925 - protein sumoylation [Evidence IEA]; GO_process: GO:0016925 - protein sumoylation [Evidence IDA] [PMID 12761287]; GO_process: GO:0016925 - protein sumoylation [Evidence IMP] [PMID 22345352]; GO_process: GO:0016925 - protein sumoylation [Evidence IMP] [PMID 23122649]; SUMO ligase NFI1 1376232..1379345 Sugiyamaella lignohabitans 30037266 AWJ20_5066 CDS PRE8 NC_031673.1 1380282 1380818 D Alpha 2 subunit of the 20S proteasome; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 9087403]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IC] [PMID 9087403]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 9087403]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 2 1380282..1380818 Sugiyamaella lignohabitans 30037267 AWJ20_5067 CDS NCE103 NC_031673.1 1384627 1385268 D Carbonic anhydrase; metalloenzyme that catalyzes CO2 hydration to bicarbonate, which is an important metabolic substrate, and protons; not expressed under conditions of high CO2, such as inside a growing colony, but transcription is induced in response to low CO2 levels, such as on the colony surface in ambient air; poorly transcribed under aerobic conditions and at an undetectable level under anaerobic conditions; abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0004089 - carbonate dehydratase activity [Evidence IEA,IEA]; GO_function: GO:0004089 - carbonate dehydratase activity [Evidence IDA] [PMID 15096093]; GO_function: GO:0004089 - carbonate dehydratase activity [Evidence IDA] [PMID 15813743]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0015976 - carbon utilization [Evidence IEA]; GO_process: GO:0071244 - cellular response to carbon dioxide [Evidence IMP] [PMID 22253597]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 15096093]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA,IEA]; carbonate dehydratase NCE103 1384627..1385268 Sugiyamaella lignohabitans 30037268 AWJ20_5068 CDS NRG1 NC_031673.1 1393051 1395753 D transcriptional regulator NRG1 1393051..1395753 Sugiyamaella lignohabitans 30037269 AWJ20_5069 CDS PDI1 NC_031673.1 1396657 1397757 D Protein disulfide isomerase; multifunctional protein of ER lumen, essential for formation of disulfide bonds in secretory and cell-surface proteins, unscrambles non-native disulfide bonds; key regulator of Ero1p; forms complex with Mnl1p that has exomannosidase activity, processing unfolded protein-bound Man8GlcNAc2 oligosaccharides to Man7GlcNAc2, promoting degradation in unfolded protein response; PDI1 has a paralog, EUG1, that arose from the whole genome duplication; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IEA]; GO_component: GO:0005788 - endoplasmic reticulum lumen [Evidence IDA] [PMID 1761554]; GO_function: GO:0016853 - isomerase activity [Evidence IEA,IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 16002399]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IEA]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IMP] [PMID 11157982]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0003756 - protein disulfide isomerase activity [Evidence IDA] [PMID 16413482]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]; GO_function: GO:0015035 - protein disulfide oxidoreductase activity [Evidence IDA] [PMID 16002399]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16002399]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IEA]; GO_process: GO:0006662 - glycerol ether metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 11157982]; protein disulfide isomerase PDI1 1396657..1397757 Sugiyamaella lignohabitans 30037270 AWJ20_5070 CDS APD1 NC_031673.1 1399263 1400159 R hypothetical protein; required for normal localization of actin patches and for normal tolerance of sodium ions and hydrogen peroxide; localizes to both cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Apd1p complement(1399263..1400159) Sugiyamaella lignohabitans 30037272 AWJ20_5071 CDS AWJ20_5071 NC_031673.1 1403071 1404102 D similar to Erwinia pyrifoliae Ep1/96 (NCBI:YP_002650176.1); uncharacterized protein 1403071..1404102 Sugiyamaella lignohabitans 30037273 AWJ20_5072 CDS AWJ20_5072 NC_031673.1 1404620 1406956 D Meiotic expression up-regulated protein-like protein 1404620..1406956 Sugiyamaella lignohabitans 30037274 AWJ20_5073 CDS SUN4 NC_031673.1 1407424 1408662 R Cell wall protein related to glucanases; possibly involved in cell wall septation; member of the SUN family; SUN4 has a paralog, SIM1, that arose from the whole genome duplication; GO_component: GO:0005618 - cell wall [Evidence IEA,IEA]; GO_component: GO:0005576 - extracellular region [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 11958935]; GO_component: GO:0005759 - mitochondrial matrix [Evidence TAS] [PMID 11958935]; GO_function: GO:0015926 - glucosidase activity [Evidence ISS] [PMID 9748433]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_process: GO:0000917 - barrier septum assembly [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence TAS] [PMID 11958935]; GO_process: GO:0000272 - polysaccharide catabolic process [Evidence IEA]; putative glucosidase SUN4 complement(1407424..1408662) Sugiyamaella lignohabitans 30037275 AWJ20_5074 CDS AWJ20_5074 NC_031673.1 1413920 1415080 R uncharacterized protein complement(1413920..1415080) Sugiyamaella lignohabitans 30037276 AWJ20_5075 CDS AWJ20_5075 NC_031673.1 1416370 1417551 R uncharacterized protein complement(1416370..1417551) Sugiyamaella lignohabitans 30037277 AWJ20_5076 CDS EGD2 NC_031673.1 1423991 1424656 D Alpha subunit of the nascent polypeptide-associated complex (NAC); involved in protein sorting and translocation; associated with cytoplasmic ribosomes; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005854 - nascent polypeptide-associated complex [Evidence IDA] [PMID 10219998]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0070300 - phosphatidic acid binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0080025 - phosphatidylinositol-3,5-bisphosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0070273 - phosphatidylinositol-4-phosphate binding [Evidence IDA] [PMID 16343487]; GO_function: GO:0051082 - unfolded protein binding [Evidence IMP] [PMID 9482879]; GO_process: GO:0051083 - 'de novo' cotranslational protein folding [Evidence IPI] [PMID 10219998]; GO_process: GO:0006620 - posttranslational protein targeting to membrane [Evidence IGI] [PMID 10518932]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Egd2p 1423991..1424656 Sugiyamaella lignohabitans 30037278 AWJ20_5077 CDS PAB1 NC_031673.1 1427843 1429981 R Poly(A) binding protein; part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15630021]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 15769879]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 17908917]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 18981231]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15630021]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15769879]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 8631901]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0008143 - poly(A) binding [Evidence IDA,IMP] [PMID 9193001]; GO_function: GO:0008428 - ribonuclease inhibitor activity [Evidence IDA] [PMID 11889048]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0060211 - regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IDA,IMP] [PMID 17766253]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IDA,IMP] [PMID 10357826]; GO_process: GO:0006810 - transport [Evidence IEA]; polyadenylate-binding protein complement(1427843..1429981) Sugiyamaella lignohabitans 30037279 AWJ20_5078 CDS CHD1 NC_031673.1 1431000 1434689 R Chromatin remodeler that regulates various aspects of transcription; acts in in conjunction with Isw1b to regulate chromatin structure and maintain chromatin integrity during transcription elongation by RNAP II by preventing trans-histone exchange over coding regions; contains a chromo domain, a helicase domain and a DNA-binding domain; component of both the SAGA and SLIK complexes; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 15647753]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 15647753]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12504018]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12682017]; GO_component: GO:0030874 - nucleolar chromatin [Evidence IDA] [PMID 17259992]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IDA] [PMID 21623345]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IDA] [PMID 10811623]; GO_function: GO:0031490 - chromatin DNA binding [Evidence IDA] [PMID 12682017]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0035064 - methylated histone binding [Evidence IDA] [PMID 15647753]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0070615 - nucleosome-dependent ATPase activity [Evidence IDA] [PMID 10811623]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000182 - rDNA binding [Evidence IDA] [PMID 17259992]; GO_process: GO:0043044 - ATP-dependent chromatin remodeling [Evidence IDA] [PMID 10811623]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0071894 - histone H2B conserved C-terminal lysine ubiquitination [Evidence IMP] [PMID 22549955]; GO_process: GO:2000104 - negative regulation of DNA-dependent DNA replication [Evidence IGI] [PMID 18245327]; GO_process: GO:0071441 - negative regulation of histone H3-K14 acetylation [Evidence IMP] [PMID 19948887]; GO_process: GO:2000616 - negative regulation of histone H3-K9 acetylation [Evidence IMP] [PMID 19948887]; GO_process: GO:1900050 - negative regulation of histone exchange [Evidence IMP] [PMID 22922743]; GO_process: GO:0042766 - nucleosome mobilization [Evidence IDA] [PMID 16606615]; GO_process: GO:0016584 - nucleosome positioning [Evidence IGI] [PMID 16468993]; GO_process: GO:0016584 - nucleosome positioning [Evidence IDA] [PMID 17949749]; GO_process: GO:1902275 - regulation of chromatin organization [Evidence IMP] [PMID 22922743]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IGI] [PMID 10811623]; GO_process: GO:0034401 - regulation of transcription by chromatin organization [Evidence IMP] [PMID 16468993]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0001178 - regulation of transcriptional start site selection at RNA polymerase II promoter [Evidence IGI] [PMID 19948887]; GO_process: GO:0006363 - termination of RNA polymerase I transcription [Evidence IGI] [PMID 17259992]; GO_process: GO:0006369 - termination of RNA polymerase II transcription [Evidence IGI,IMP] [PMID 12504018]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IGI,IPI] [PMID 12682017]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; chromatin-remodeling ATPase CHD1 complement(1431000..1434689) Sugiyamaella lignohabitans 30037280 AWJ20_5079 CDS AWJ20_5079 NC_031673.1 1434937 1435635 R chromodomain-helicase-DNA-binding protein 1 complement(1434937..1435635) Sugiyamaella lignohabitans 30037281 AWJ20_5080 CDS ULP2 NC_031673.1 1438802 1442125 R Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins; plays a role in chromosome cohesion at centromeric regions and recovery from checkpoint arrest induced by DNA damage or DNA replication defects; potential Cdc28p substrate; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10713161]; GO_function: GO:0016929 - SUMO-specific protease activity [Evidence IDA,IMP] [PMID 10713161]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA,IEA]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence ISS] [PMID 10094048]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IDA] [PMID 10713161]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_process: GO:0030261 - chromosome condensation [Evidence IMP] [PMID 11333221]; GO_process: GO:0007094 - mitotic spindle assembly checkpoint [Evidence IGI,IMP] [PMID 10713162]; GO_process: GO:0006276 - plasmid maintenance [Evidence IMP] [PMID 10713161]; GO_process: GO:0006276 - plasmid maintenance [Evidence IMP] [PMID 11333221]; GO_process: GO:0016926 - protein desumoylation [Evidence IDA,IMP] [PMID 10713161]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; Ulp2p complement(1438802..1442125) Sugiyamaella lignohabitans 30037283 AWJ20_5081 CDS TIM44 NC_031673.1 1446063 1447406 D Essential component of the TIM23 complex; tethers the import motor and regulatory factors (PAM complex) to the translocation channel (Tim23p-Tim17p core complex); TIM23 complex is short for the translocase of the inner mitochondrial membrane; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 14517234]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 14638855]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0015450 - P-P-bond-hydrolysis-driven protein transmembrane transporter activity [Evidence IEA]; GO_function: GO:0051087 - chaperone binding [Evidence IMP] [PMID 11344168]; GO_function: GO:0051087 - chaperone binding [Evidence IPI] [PMID 7809127]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP] [PMID 10824101]; GO_function: GO:0030674 - protein binding, bridging [Evidence IMP] [PMID 11344168]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 1396562]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 18400944]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tim44p 1446063..1447406 Sugiyamaella lignohabitans 30037284 AWJ20_5082 CDS AWJ20_5082 NC_031673.1 1448631 1450565 D uncharacterized protein 1448631..1450565 Sugiyamaella lignohabitans 30037285 AWJ20_5083 CDS AWJ20_5083 NC_031673.1 1450779 1452449 R Putative dihydrokaempferol 4-reductase; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0004090 - carbonyl reductase (NADPH) activity [Evidence ISA] [PMID 19577617]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050662 - coenzyme binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0044237 - cellular metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; carbonyl reductase (NADPH-dependent) complement(1450779..1452449) Sugiyamaella lignohabitans 30037286 AWJ20_5084 CDS DEP1 NC_031673.1 1454614 1456773 R Rpd3L histone deacetylase complex subunit DEP1 complement(1454614..1456773) Sugiyamaella lignohabitans 30037287 AWJ20_5085 CDS DEG1 NC_031673.1 1462696 1464084 R tRNA:pseudouridine synthase; introduces pseudouridines at position 38 or 39 in tRNA, important for maintenance of translation efficiency and normal cell growth, localizes to both the nucleus and cytoplasm; non-essential for viability; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9430663]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9430663]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO_function: GO:0009982 - pseudouridine synthase activity [Evidence IDA,IMP] [PMID 9430663]; GO_process: GO:0009451 - RNA modification [Evidence IEA]; GO_process: GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IEA]; GO_process: GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA,IMP] [PMID 9430663]; pseudouridine synthase DEG1 complement(1462696..1464084) Sugiyamaella lignohabitans 30037288 AWJ20_5086 CDS SPB4 NC_031673.1 1464424 1466280 D Putative ATP-dependent RNA helicase; nucleolar protein required for synthesis of 60S ribosomal subunits at a late step in the pathway; sediments with 66S pre-ribosomes in sucrose gradients; GO_component: GO:0030686 - 90S preribosome [Evidence IDA,IPI] [PMID 21825077]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 9769101]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 9769101]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS] [PMID 2408148]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:1902626 - assembly of large subunit precursor of preribosome [Evidence IMP] [PMID 22735702]; GO_process: GO:0000470 - maturation of LSU-rRNA [Evidence IMP] [PMID 2408148]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 21825077]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 2408148]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Spb4p 1464424..1466280 Sugiyamaella lignohabitans 30037289 AWJ20_5087 CDS ULA1 NC_031673.1 1466507 1468246 R Protein that activates Rub1p (NEDD8) before neddylation; acts together with Uba3p; may play a role in protein degradation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0019781 - NEDD8 activating enzyme activity [Evidence IMP,ISS] [PMID 9531531]; GO_function: GO:0019781 - NEDD8 activating enzyme activity [Evidence IDA,ISS] [PMID 9545234]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0045116 - protein neddylation [Evidence IEA]; GO_process: GO:0045116 - protein neddylation [Evidence ISS] [PMID 9531531]; GO_process: GO:0045116 - protein neddylation [Evidence IDA,IMP,ISS] [PMID 9545234]; Ula1p complement(1466507..1468246) Sugiyamaella lignohabitans 30037290 AWJ20_5088 CDS ROT1 NC_031673.1 1469864 1470355 D Molecular chaperone involved in protein folding in ER; mutation causes defects in cell wall synthesis and lysis of autophagic bodies, suppresses tor2 mutations, and is synthetically lethal with kar2-1 and with rot2 mutations; involved in N-linked glycosylation and O-mannosylation; transmembrane helix Ser250 is essential for Rot1p to interact with other membrane components and exert its functional role, avoiding exposure of Ser H-bonding group at lipid-exposed surface; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IDA] [PMID 16567426]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA,IMP] [PMID 18508919]; GO_process: GO:0006458 - 'de novo' protein folding [Evidence IMP,IPI] [PMID 18508919]; GO_process: GO:0007118 - budding cell apical bud growth [Evidence IGI,IMP] [PMID 17606994]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IGI] [PMID 16874095]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IMP] [PMID 17606994]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IMP] [PMID 9545237]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IGI,IPI] [PMID 22492205]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IGI] [PMID 22492205]; GO_process: GO:0006457 - protein folding [Evidence IGI] [PMID 16874095]; Rot1p 1469864..1470355 Sugiyamaella lignohabitans 30037291 AWJ20_5089 CDS TAF2 NC_031673.1 1470600 1473638 R TFIID subunit (150 kDa); involved in RNA polymerase II transcription initiation; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10818000]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf2p complement(1470600..1473638) Sugiyamaella lignohabitans 30037292 AWJ20_5090 CDS TAF2 NC_031673.1 1474109 1475146 R TFIID subunit (150 kDa); involved in RNA polymerase II transcription initiation; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 10818000]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf2p complement(1474109..1475146) Sugiyamaella lignohabitans 30037294 AWJ20_5091 CDS YHC3 NC_031673.1 1476337 1476930 D Protein required for the ATP-dependent transport of arginine; vacuolar membrane protein; involved in the ATP-dependent transport of arginine into the vacuole and possibly in balancing ion homeostasis; homolog of human CLN3 involved in Batten disease (juvenile onset neuronal ceroid lipofuscinosis); GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 10319861]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 9753630]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IBA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0031301 - integral component of organelle membrane [Evidence IBA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0015809 - arginine transport [Evidence IMP] [PMID 14660799]; GO_process: GO:0015819 - lysine transport [Evidence IMP] [PMID 14660799]; GO_process: GO:0051453 - regulation of intracellular pH [Evidence IMP] [PMID 10191121]; GO_process: GO:0051453 - regulation of intracellular pH [Evidence IMP] [PMID 10319861]; GO_process: GO:0051453 - regulation of intracellular pH [Evidence IMP] [PMID 16423829]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007034 - vacuolar transport [Evidence IBA]; GO_process: GO:0007033 - vacuole organization [Evidence IBA]; Yhc3p 1476337..1476930 Sugiyamaella lignohabitans 30037295 AWJ20_5092 CDS KRR1 NC_031673.1 1477993 1479015 R Nucleolar protein required for rRNA synthesis and ribosomal assembly; required for the synthesis of 18S rRNA and for the assembly of 40S ribosomal subunit; essential gene; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11027267]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 12150911]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 15590835]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 11027267]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 11996121]; GO_process: GO:0042274 - ribosomal small subunit biogenesis [Evidence IMP] [PMID 12150911]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Krr1p complement(1477993..1479015) Sugiyamaella lignohabitans 30037296 AWJ20_5093 CDS AWJ20_5093 NC_031673.1 1479953 1482139 R uncharacterized protein complement(1479953..1482139) Sugiyamaella lignohabitans 30037297 AWJ20_5094 CDS TGL5 NC_031673.1 1482466 1484550 R Bifunctional triacylglycerol lipase and LPA acyltransferase; lipid particle-localized triacylglycerol (TAG) lipase involved in triacylglycerol mobilization; catalyzes acylation of lysophosphatidic acid (LPA); potential Cdc28p substrate; TGL5 has a paralog, TGL4, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 16135509]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0042171 - lysophosphatidic acid acyltransferase activity [Evidence IDA] [PMID 20016004]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IEA]; GO_function: GO:0004806 - triglyceride lipase activity [Evidence IDA,IMP] [PMID 16135509]; GO_process: GO:0016042 - lipid catabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA,IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; GO_process: GO:0006642 - triglyceride mobilization [Evidence IDA,IMP] [PMID 16135509]; Tgl5p complement(1482466..1484550) Sugiyamaella lignohabitans 30037298 AWJ20_5095 CDS MNN4 NC_031673.1 1491826 1493994 D Putative positive regulator of mannosylphosphate transferase Mnn6p; involved in mannosylphosphorylation of N-linked oligosaccharides; expression increases in late-logarithmic and stationary growth phases; coding sequence contains length polymorphisms in different strains; MNN4 has a paralog, YJR061W, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence ISS] [PMID 9023541]; GO_function: GO:0008047 - enzyme activator activity [Evidence IMP] [PMID 9459307]; GO_process: GO:0071470 - cellular response to osmotic stress [Evidence IEP] [PMID 9459307]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IMP] [PMID 9023541]; GO_process: GO:0006493 - protein O-linked glycosylation [Evidence IMP] [PMID 9813355]; Mnn4p 1491826..1493994 Sugiyamaella lignohabitans 30037299 AWJ20_5096 CDS UTR4 NC_031673.1 1495890 1496624 R Protein with sequence similarity to acireductone synthases; involved in methionine salvage; found in both the cytoplasm and nucleus; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0043715 - 2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity [Evidence IEA]; GO_function: GO:0043716 - 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity [Evidence IEA]; GO_function: GO:0043874 - acireductone synthase activity [Evidence IEA,IEA]; GO_function: GO:0043874 - acireductone synthase activity [Evidence ISS] [PMID 15102328]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_process: GO:0019284 - L-methionine biosynthetic process from S-adenosylmethionine [Evidence IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA,IEA]; GO_process: GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IMP] [PMID 18625006]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0016311 - dephosphorylation [Evidence IEA,IEA,IEA]; GO_process: GO:0009086 - methionine biosynthetic process [Evidence IEA]; putative acireductone synthase UTR4 complement(1495890..1496624) Sugiyamaella lignohabitans 30037300 AWJ20_5097 CDS AWJ20_5097 NC_031673.1 1503029 1504867 D uncharacterized protein 1503029..1504867 Sugiyamaella lignohabitans 30037301 AWJ20_5098 CDS RAD7 NC_031673.1 1505353 1507269 D UV-damaged DNA-binding protein RAD7 1505353..1507269 Sugiyamaella lignohabitans 30037302 AWJ20_5099 CDS HSF1 NC_031673.1 1508235 1510004 R stress-responsive transcription factor HSF1 complement(1508235..1510004) Sugiyamaella lignohabitans 30037303 AWJ20_5100 CDS PRE6 NC_031673.1 1517875 1519003 R Alpha 4 subunit of the 20S proteasome; may replace alpha 3 subunit (Pre9p) under stress conditions to create a more active proteasomal isoform; GFP-fusion protein relocates from cytosol to the mitochondrial surface upon oxidative stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16806052]; GO_component: GO:0042175 - nuclear outer membrane-endoplasmic reticulum membrane network [Evidence IDA] [PMID 9799224]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 18504300]; GO_component: GO:0000502 - proteasome complex [Evidence IEA]; GO_component: GO:0005839 - proteasome core complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IEA]; GO_component: GO:0019773 - proteasome core complex, alpha-subunit complex [Evidence IDA] [PMID 9087403]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 18504300]; GO_function: GO:0004175 - endopeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004298 - threonine-type endopeptidase activity [Evidence IEA,IEA]; GO_process: GO:0010499 - proteasomal ubiquitin-independent protein catabolic process [Evidence IDA] [PMID 19162040]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 11545745]; GO_process: GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process [Evidence IDA] [PMID 19029916]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0051603 - proteolysis involved in cellular protein catabolic process [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; proteasome core particle subunit alpha 4 complement(join(1517875..1518622,1518969..1519003)) Sugiyamaella lignohabitans 30037306 AWJ20_5101 CDS TAF5 NC_031673.1 1521156 1523582 D Subunit (90 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification; GO_component: GO:0000124 - SAGA complex [Evidence IDA] [PMID 9674426]; GO_component: GO:0046695 - SLIK (SAGA-like) complex [Evidence IDA] [PMID 12446794]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 10788514]; GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IDA] [PMID 15448131]; GO_function: GO:0001075 - RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [Evidence IC] [PMID 15448131]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 12600943]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 11585915]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 21070969]; GO_process: GO:0051123 - RNA polymerase II transcriptional preinitiation complex assembly [Evidence IC] [PMID 10788514]; GO_process: GO:0016568 - chromatin modification [Evidence IDA] [PMID 9674426]; GO_process: GO:0016573 - histone acetylation [Evidence IDA] [PMID 9674426]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 12138208]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 15448131]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Taf5p 1521156..1523582 Sugiyamaella lignohabitans 30037307 AWJ20_5102 CDS CTR3 NC_031673.1 1527317 1527970 R High-affinity copper transporter of the plasma membrane; acts as a trimer; gene is disrupted by a Ty2 transposon insertion in many laboratory strains of S. cerevisiae; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 10924521]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO_function: GO:0015088 - copper uptake transmembrane transporter activity [Evidence IDA] [PMID 10924521]; GO_process: GO:0015677 - copper ion import [Evidence IDA] [PMID 10924521]; GO_process: GO:0035434 - copper ion transmembrane transport [Evidence IEA]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Ctr3p complement(1527317..1527970) Sugiyamaella lignohabitans 30037308 AWJ20_5103 CDS SSD1 NC_031673.1 1532485 1536432 D mRNA-binding translational repressor SSD1 1532485..1536432 Sugiyamaella lignohabitans 30037309 AWJ20_5104 CDS AWJ20_5104 NC_031673.1 1536771 1537838 R uncharacterized protein complement(1536771..1537838) Sugiyamaella lignohabitans 30037310 AWJ20_5105 CDS CDC55 NC_031673.1 1541544 1543007 D Non-essential regulatory subunit B of protein phosphatase 2A (PP2A); localization to cytoplasm requires Zds1p and Zds2p and promotes mitotic entry; localization to nucleus prevents mitotic exit; required for correct nuclear division and chromosome segregation in meiosis; maintains nucleolar sequestration of Cdc14p during early meiosis; limits formation of PP2A-Rts1p holocomplexes to ensure timely dissolution of sister chromosome cohesion; homolog of mammalian B55; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 12388751]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 12388751]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21536748]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12388751]; GO_component: GO:0000159 - protein phosphatase type 2A complex [Evidence IEA]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence IEA]; GO_function: GO:0008601 - protein phosphatase type 2A regulator activity [Evidence ISA] [PMID 1656238]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0000078 - cytokinesis after mitosis checkpoint [Evidence IGI] [PMID 20980617]; GO_process: GO:0001100 - negative regulation of exit from mitosis [Evidence IMP] [PMID 16314395]; GO_process: GO:0010971 - positive regulation of G2/M transition of mitotic cell cycle [Evidence IMP] [PMID 21536748]; GO_process: GO:0061586 - positive regulation of transcription by transcription factor localization [Evidence IMP] [PMID 23275436]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IDA] [PMID 22581371]; GO_process: GO:0006470 - protein dephosphorylation [Evidence IMP] [PMID 22814605]; GO_process: GO:0034504 - protein localization to nucleus [Evidence IMP] [PMID 23275436]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; protein phosphatase 2A regulatory subunit CDC55 1541544..1543007 Sugiyamaella lignohabitans 30037311 AWJ20_5106 CDS COX13 NC_031673.1 1544028 1544444 R Subunit VIa of cytochrome c oxidase; present in a subclass of cytochrome c oxidase complexes that may have a role in mimimizing generation of reactive oxygen species; not essential for cytochrome c oxidase activity but may modulate activity in response to ATP; required for assembly of Rcf2p into cytochrome c oxidase - cytochrome bc1 supercomplexes; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA,IEA]; GO_component: GO:0005751 - mitochondrial respiratory chain complex IV [Evidence IEA]; GO_component: GO:0005751 - mitochondrial respiratory chain complex IV [Evidence IPI] [PMID 1331058]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IEA,IEA]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IDA] [PMID 1331058]; GO_function: GO:0004129 - cytochrome-c oxidase activity [Evidence IDA] [PMID 7851399]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IDA] [PMID 10429195]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0009060 - aerobic respiration [Evidence IMP] [PMID 8395517]; GO_process: GO:1902600 - hydrogen ion transmembrane transport [Evidence IEA,IEA]; GO_process: GO:0097250 - mitochondrial respiratory chain supercomplex assembly [Evidence IMP] [PMID 22342701]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006119 - oxidative phosphorylation [Evidence IEA]; cytochrome c oxidase subunit VIa complement(1544028..1544444) Sugiyamaella lignohabitans 30037312 AWJ20_5107 CDS ATP1 NC_031673.1 1548638 1549984 D Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase; which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; F1 translationally regulates ATP6 and ATP8 expression to achieve a balanced output of ATP synthase genes encoded in nucleus and mitochondria; phosphorylated; N-terminally propionylated in vivo; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 10869431]; GO_component: GO:0005754 - mitochondrial proton-transporting ATP synthase, catalytic core [Evidence IDA] [PMID 17082766]; GO_component: GO:0005754 - mitochondrial proton-transporting ATP synthase, catalytic core [Evidence IMP,ISS] [PMID 2876995]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11502169]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA,IEA]; GO_component: GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IDA] [PMID 15294286]; GO_component: GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 15294286]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 18722382]; GO_function: GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IMP] [PMID 1827117]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IDA] [PMID 20691145]; GO_function: GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IMP,ISS] [PMID 2876995]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO_process: GO:0006754 - ATP biosynthetic process [Evidence IEA]; GO_process: GO:0015991 - ATP hydrolysis coupled proton transport [Evidence IEA]; GO_process: GO:0046034 - ATP metabolic process [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IEA]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IDA] [PMID 20691145]; GO_process: GO:0015986 - ATP synthesis coupled proton transport [Evidence IMP,ISS] [PMID 2876995]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; F1F0 ATP synthase subunit alpha 1548638..1549984 Sugiyamaella lignohabitans 30037313 AWJ20_5109 CDS AWJ20_5109 NC_031673.1 1554163 1555599 R uncharacterized protein complement(1554163..1555599) Sugiyamaella lignohabitans 30037315 AWJ20_5110 CDS RPC53 NC_031673.1 1557342 1558847 D RNA polymerase III subunit C53; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IEA]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 1406624]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006383 - transcription from RNA polymerase III promoter [Evidence IEA]; Rpc53p 1557342..1558847 Sugiyamaella lignohabitans 30037317 AWJ20_5111 CDS AWJ20_5111 NC_031673.1 1559801 1561648 R uncharacterized protein complement(1559801..1561648) Sugiyamaella lignohabitans 30037318 AWJ20_5112 CDS SLC1 NC_031673.1 1565870 1566709 D 1-acyl-sn-glycerol-3-phosphate acyltransferase; catalyzes the acylation of lysophosphatidic acid to form phosphatidic acid, a key intermediate in lipid metabolism; enzymatic activity detected in lipid particles and microsomes; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003841 - 1-acylglycerol-3-phosphate O-acyltransferase activity [Evidence IDA] [PMID 9212466]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA,IEA]; GO_process: GO:0016024 - CDP-diacylglycerol biosynthetic process [Evidence IEA]; GO_process: GO:0046474 - glycerophospholipid biosynthetic process [Evidence IGI] [PMID 17675291]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; 1-acylglycerol-3-phosphate O-acyltransferase SLC1 1565870..1566709 Sugiyamaella lignohabitans 30037319 AWJ20_5113 CDS NRK1 NC_031673.1 1567364 1567903 R Nicotinamide riboside kinase; catalyzes the phosphorylation of nicotinamide riboside and nicotinic acid riboside in salvage pathways for NAD+ biosynthesis; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0034317 - nicotinic acid riboside kinase activity [Evidence ISS] [PMID 17914902]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0050262 - ribosylnicotinamide kinase activity [Evidence IEA,IEA]; GO_function: GO:0050262 - ribosylnicotinamide kinase activity [Evidence IDA] [PMID 15137942]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0034356 - NAD biosynthesis via nicotinamide riboside salvage pathway [Evidence IGI] [PMID 15137942]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IEA]; GO_process: GO:0009435 - NAD biosynthetic process [Evidence IGI] [PMID 17914902]; GO_process: GO:0019359 - nicotinamide nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0046495 - nicotinamide riboside metabolic process [Evidence IDA,IGI] [PMID 15137942]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]; ribosylnicotinamide kinase complement(1567364..1567903) Sugiyamaella lignohabitans 30037320 AWJ20_5114 CDS RAT1 NC_031673.1 1570764 1573742 D ssRNA exonuclease RAT1 1570764..1573742 Sugiyamaella lignohabitans 30037321 AWJ20_5115 CDS FAP1 NC_031673.1 1575627 1578083 D Protein that binds to Fpr1p; confers rapamycin resistance by competing with rapamycin for Fpr1p binding; accumulates in the nucleus upon treatment of cells with rapamycin; has similarity to D. melanogaster shuttle craft and human NFX1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10998178]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence ISS] [PMID 10998178]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Fap1p 1575627..1578083 Sugiyamaella lignohabitans 30037322 AWJ20_5116 CDS AWJ20_5116 NC_031673.1 1578838 1579788 D Uncharacterized protein R707 1578838..1579788 Sugiyamaella lignohabitans 30037323 AWJ20_5117 CDS MCM10 NC_031673.1 1579842 1581485 R Essential chromatin-associated protein; involved in the initiation of DNA replication; required for the association of the MCM2-7 complex with replication origins; required to stabilize the catalytic subunit of DNA polymerase-alpha; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11168584]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 13680157]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 9154825]; GO_component: GO:0005657 - replication fork [Evidence IMP] [PMID 15494305]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 10783164]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 15494305]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 19605346]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 16675460]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 19605346]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IGI,IMP] [PMID 10783164]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP,IPI] [PMID 9154825]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IGI,IMP] [PMID 10783164]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IGI,IMP] [PMID 11168584]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 9154825]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP,IPI] [PMID 16085704]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP,IPI] [PMID 16328881]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP,IPI] [PMID 16085704]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; Mcm10p complement(1579842..1581485) Sugiyamaella lignohabitans 30037324 AWJ20_5118 CDS SFH5 NC_031673.1 1582019 1583014 R Non-classical phosphatidylinositol transfer protein (PITP); exhibits PI- but not PC-transfer activity; localizes to the peripheral endoplasmic reticulum, cytosol and microsomes; similar to Sec14p; partially relocalizes to the plasma membrane upon DNA replication stress; GO_component: GO:0071944 - cell periphery [Evidence IDA] [PMID 12869188]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 16262726]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12869188]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 19477927]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0043231 - intracellular membrane-bounded organelle [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_component: GO:0031090 - organelle membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 19477927]; GO_function: GO:0008525 - phosphatidylcholine transporter activity [Evidence IDA] [PMID 10848624]; GO_function: GO:0008526 - phosphatidylinositol transporter activity [Evidence IDA] [PMID 10848624]; GO_process: GO:0043001 - Golgi to plasma membrane protein transport [Evidence IGI] [PMID 10848624]; GO_process: GO:0006869 - lipid transport [Evidence IEA]; GO_process: GO:0046488 - phosphatidylinositol metabolic process [Evidence IGI] [PMID 16262726]; GO_process: GO:0015914 - phospholipid transport [Evidence IDA] [PMID 10848624]; GO_process: GO:2000114 - regulation of establishment of cell polarity [Evidence IGI] [PMID 19477927]; GO_process: GO:0017157 - regulation of exocytosis [Evidence IGI] [PMID 19477927]; GO_process: GO:0006810 - transport [Evidence IEA]; Sfh5p complement(1582019..1583014) Sugiyamaella lignohabitans 30037325 AWJ20_5119 CDS AWJ20_5119 NC_031673.1 1583698 1584600 D uncharacterized protein 1583698..1584600 Sugiyamaella lignohabitans 30037326 AWJ20_5120 CDS HAP2 NC_031673.1 1586055 1586612 D Subunit of the Hap2p/3p/4p/5p CCAAT-binding complex; complex is heme-activated and glucose-repressed; complex is a transcriptional activator and global regulator of respiratory gene expression; contains sequences sufficient for both complex assembly and DNA binding; GO_component: GO:0016602 - CCAAT-binding factor complex [Evidence IEA]; GO_component: GO:0016602 - CCAAT-binding factor complex [Evidence IDA,IPI] [PMID 2832951]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 7828851]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 2832951]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_process: GO:0000436 - carbon catabolite activation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 2832951]; GO_process: GO:0043457 - regulation of cellular respiration [Evidence IMP] [PMID 2182199]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hap2p 1586055..1586612 Sugiyamaella lignohabitans 30037328 AWJ20_5121 CDS AWJ20_5121 NC_031673.1 1586919 1589549 R Similar to Conserved oligomeric Golgi complex subunit 1; acc. no. Q9VGC3; uncharacterized protein complement(1586919..1589549) Sugiyamaella lignohabitans 30037329 AWJ20_5122 CDS SFA1 NC_031673.1 1594729 1595850 D Bifunctional alcohol dehydrogenase and formaldehyde dehydrogenase; formaldehyde dehydrogenase activity is glutathione-dependent; functions in formaldehyde detoxification and formation of long chain and complex alcohols, regulated by Hog1p-Sko1p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA,IEA]; GO_function: GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IDA] [PMID 8483449]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IMP] [PMID 12499363]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IDA] [PMID 8483449]; GO_function: GO:0033833 - hydroxymethylfurfural reductase (NADH) activity [Evidence IMP] [PMID 16652391]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0000947 - amino acid catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0006069 - ethanol oxidation [Evidence IEA]; GO_process: GO:0046294 - formaldehyde catabolic process [Evidence IDA] [PMID 8483449]; GO_process: GO:0033859 - furaldehyde metabolic process [Evidence IMP] [PMID 16652391]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; bifunctional alcohol dehydrogenase/S-(hydroxymethyl)glutathione dehydrogenase 1594729..1595850 Sugiyamaella lignohabitans 30037330 AWJ20_5123 CDS CIA2 NC_031673.1 1596021 1596659 R Component of cytosolic iron-sulfur protein assembly (CIA) machinery; acts at a late step of Fe-S cluster assembly; forms the CIA targeting complex with Cia1p and Met18p that directs Fe-S cluster incorporation into a subset of proteins involved in methionine biosynthesis, DNA replication and repair, transcription, and telomere maintenance; ortholog of human FAM96B; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0007059 - chromosome segregation [Evidence IEA]; GO_process: GO:0016226 - iron-sulfur cluster assembly [Evidence IMP] [PMID 22678362]; Cia2p complement(1596021..1596659) Sugiyamaella lignohabitans 30037331 AWJ20_5124 CDS MCM3 NC_031673.1 1599614 1602256 R Protein involved in DNA replication; component of the Mcm2-7 hexameric helicase complex that binds chromatin as a part of the pre-replicative complex; GO_component: GO:0031261 - DNA replication preinitiation complex [Evidence IPI] [PMID 9554851]; GO_component: GO:0042555 - MCM complex [Evidence IEA]; GO_component: GO:0042555 - MCM complex [Evidence IDA] [PMID 12480933]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 10704410]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 16824194]; GO_component: GO:0005656 - nuclear pre-replicative complex [Evidence IDA] [PMID 9335335]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10704410]; GO_component: GO:0031298 - replication fork protection complex [Evidence IDA] [PMID 16531994]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 12480933]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 11756674]; GO_function: GO:0003688 - DNA replication origin binding [Evidence IDA] [PMID 16824194]; GO_function: GO:0003682 - chromatin binding [Evidence IDA] [PMID 9554851]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0017116 - single-stranded DNA-dependent ATP-dependent DNA helicase activity [Evidence IDA] [PMID 18657510]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 12060653]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0030466 - chromatin silencing at silent mating-type cassette [Evidence IMP] [PMID 19064704]; GO_process: GO:0006348 - chromatin silencing at telomere [Evidence IMP] [PMID 19064704]; GO_process: GO:0000727 - double-strand break repair via break-induced replication [Evidence IMP] [PMID 20516198]; GO_process: GO:0033260 - nuclear cell cycle DNA replication [Evidence IMP] [PMID 10834843]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IDA] [PMID 16824194]; GO_process: GO:0006267 - pre-replicative complex assembly involved in nuclear cell cycle DNA replication [Evidence IPI] [PMID 9335335]; MCM DNA helicase complex subunit MCM3 complement(1599614..1602256) Sugiyamaella lignohabitans 30037332 AWJ20_5125 CDS YHB1 NC_031673.1 1603608 1604807 D Nitric oxide oxidoreductase; flavohemoglobin involved in nitric oxide detoxification; plays a role in the oxidative and nitrosative stress responses; protein increases in abundance and relocalizes from nucleus to cytoplasmic foci upon DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 15611069]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 15611069]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0008941 - nitric oxide dioxygenase activity [Evidence IEA]; GO_function: GO:0016966 - nitric oxide reductase activity [Evidence IMP] [PMID 10758168]; GO_function: GO:0016966 - nitric oxide reductase activity [Evidence IMP] [PMID 15611069]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0019825 - oxygen binding [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IDA] [PMID 8810268]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IDA] [PMID 9545281]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0015671 - oxygen transport [Evidence IEA]; GO_process: GO:0009636 - response to toxic substance [Evidence IEA]; Yhb1p 1603608..1604807 Sugiyamaella lignohabitans 30037333 AWJ20_5126 CDS GPI1 NC_031673.1 1605283 1607430 D Membrane protein involved in the synthesis of GlcNAc-PI; N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI) is the first intermediate in the synthesis of glycosylphosphatidylinositol (GPI) anchors; human and mouse GPI1p are functional homologs; GO_component: GO:0000506 - glycosylphosphatidylinositol-N- acetylglucosaminyltransferase (GPI-GnT) complex [Evidence IGI,ISA] [PMID 9729469]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 8910381]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0017176 - phosphatidylinositol N-acetylglucosaminyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0017176 - phosphatidylinositol N-acetylglucosaminyltransferase activity [Evidence IC] [PMID 9729469]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IDA,IMP] [PMID 8910381]; Gpi1p 1605283..1607430 Sugiyamaella lignohabitans 30037334 AWJ20_5127 CDS VRG4 NC_031673.1 1607694 1608698 R Golgi GDP-mannose transporter; regulates Golgi function and glycosylation in Golgi; VRG4 has a paralog, HVG1, that arose from the whole genome duplication; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 9395539]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0031410 - cytoplasmic vesicle [Evidence IEA]; GO_component: GO:0030659 - cytoplasmic vesicle membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005458 - GDP-mannose transmembrane transporter activity [Evidence IDA] [PMID 20576760]; GO_function: GO:0005458 - GDP-mannose transmembrane transporter activity [Evidence IMP] [PMID 9395539]; GO_function: GO:0005338 - nucleotide-sugar transmembrane transporter activity [Evidence IEA]; GO_process: GO:0015784 - GDP-mannose transport [Evidence IMP] [PMID 9395539]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:1901679 - nucleotide transmembrane transport [Evidence IEA]; GO_process: GO:0015780 - nucleotide-sugar transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vrg4p complement(1607694..1608698) Sugiyamaella lignohabitans 30037335 AWJ20_5128 CDS MSH3 NC_031673.1 1609391 1612786 D Mismatch repair protein; forms dimers with Msh2p that mediate repair of insertion or deletion mutations and removal of nonhomologous DNA ends, contains a PCNA (Pol30p) binding motif required for genome stability; GO_component: GO:0032302 - MutSbeta complex [Evidence IPI] [PMID 8805366]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0000228 - nuclear chromosome [Evidence IBA]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0032135 - DNA insertion or deletion binding [Evidence IDA] [PMID 8805366]; GO_function: GO:0008094 - DNA-dependent ATPase activity [Evidence IBA]; GO_function: GO:0000403 - Y-form DNA binding [Evidence IDA] [PMID 16781730]; GO_function: GO:0003684 - damaged DNA binding [Evidence IBA]; GO_function: GO:0000406 - double-strand/single-strand DNA junction binding [Evidence IDA] [PMID 16781730]; GO_function: GO:0000404 - heteroduplex DNA loop binding [Evidence IDA] [PMID 16781730]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IEA]; GO_function: GO:0030983 - mismatched DNA binding [Evidence IDA] [PMID 17636021]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006310 - DNA recombination [Evidence IMP] [PMID 15920474]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0043570 - maintenance of DNA repeat elements [Evidence IBA]; GO_process: GO:0000710 - meiotic mismatch repair [Evidence IMP] [PMID 16702432]; GO_process: GO:0006298 - mismatch repair [Evidence IEA]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 8510668]; GO_process: GO:0006298 - mismatch repair [Evidence IMP] [PMID 9520271]; GO_process: GO:0006312 - mitotic recombination [Evidence IMP] [PMID 8849883]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IBA]; GO_process: GO:0000735 - removal of nonhomologous ends [Evidence IGI,IMP] [PMID 9256462]; mismatch repair protein MSH3 1609391..1612786 Sugiyamaella lignohabitans 30037336 AWJ20_5129 CDS LYS12 NC_031673.1 1614395 1615261 D Homo-isocitrate dehydrogenase; an NAD-linked mitochondrial enzyme required for the fourth step in the biosynthesis of lysine, in which homo-isocitrate is oxidatively decarboxylated to alpha-ketoadipate; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0051287 - NAD binding [Evidence IEA]; GO_function: GO:0047046 - homoisocitrate dehydrogenase activity [Evidence IEA]; GO_function: GO:0047046 - homoisocitrate dehydrogenase activity [Evidence IDA] [PMID 17223711]; GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IEA]; GO_process: GO:0009085 - lysine biosynthetic process [Evidence IC] [PMID 17223711]; GO_process: GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; homoisocitrate dehydrogenase 1614395..1615261 Sugiyamaella lignohabitans 30037337 AWJ20_5130 CDS SLX8 NC_031673.1 1616070 1617131 D Subunit of Slx5-Slx8 SUMO-targeted ubiquitin ligase (STUbL) complex; stimulated by prior attachment of SUMO to the substrate; contains a C-terminal RING domain; forms nuclear foci upon DNA replication stress; GO_component: GO:0033768 - SUMO-targeted ubiquitin ligase complex [Evidence IDA] [PMID 17848550]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19270524]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 17728242]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 17848550]; GO_function: GO:0004842 - ubiquitin-protein transferase activity [Evidence IDA] [PMID 18032921]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI,IMP] [PMID 11139495]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IGI,IMP] [PMID 16325482]; GO_process: GO:0016925 - protein sumoylation [Evidence IGI,IMP] [PMID 16387868]; GO_process: GO:0016567 - protein ubiquitination [Evidence IEA]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 17728242]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 17848550]; GO_process: GO:0016567 - protein ubiquitination [Evidence IDA] [PMID 18032921]; GO_process: GO:0000723 - telomere maintenance [Evidence IMP] [PMID 16428246]; SUMO-targeted ubiquitin ligase complex subunit SLX8 1616070..1617131 Sugiyamaella lignohabitans 30037339 AWJ20_5131 CDS RCM1 NC_031673.1 1617493 1618575 R rRNA m5C methyltransferase; methylates cytosine at position 2278 of 25S rRNA while Nop2p methylates cytosine at position 2870; contains seven beta-strand methyltransferase motif; localized to the nucleolus; interacts with Trm112p; homolog of NSUN5A, a human gene which is deleted in Williams-Beuren Syndrome; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 23913415]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10649453]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0009383 - rRNA (cytosine-C5-)-methyltransferase activity [Evidence IDA,IGI,IMP] [PMID 23913415]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0070475 - rRNA base methylation [Evidence IDA,IGI,IMP] [PMID 23913415]; Rcm1p complement(1617493..1618575) Sugiyamaella lignohabitans 30037340 AWJ20_5132 CDS DML1 NC_031673.1 1619263 1620906 R Essential protein involved in mtDNA inheritance; may also function in the partitioning of the mitochondrial organelle or in the segregation of chromosomes, exhibits regions similar to members of a GTPase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14690591]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IMP] [PMID 12702300]; GO_process: GO:0006276 - plasmid maintenance [Evidence IMP] [PMID 12702300]; Dml1p complement(1619263..1620906) Sugiyamaella lignohabitans 30037341 AWJ20_5133 CDS RRP46 NC_031673.1 1622000 1622683 D Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp46p (EXOSC5); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000177 - cytoplasmic exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0000178 - exosome (RNase complex) [Evidence IEA]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 10465791]; GO_component: GO:0000176 - nuclear exosome (RNase complex) [Evidence IDA] [PMID 19046973]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10465791]; GO_process: GO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 10508172]; GO_process: GO:0043628 - ncRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0070651 - nonfunctional rRNA decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process [Evidence IMP] [PMID 19369424]; GO_process: GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process [Evidence IMP] [PMID 10465791]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 15828860]; GO_process: GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process [Evidence IDA] [PMID 17643380]; GO_process: GO:0070478 - nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [Evidence IC] [PMID 10465791]; GO_process: GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' [Evidence IC] [PMID 10465791]; GO_process: GO:0070481 - nuclear-transcribed mRNA catabolic process, non-stop decay [Evidence IC] [PMID 10465791]; GO_process: GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing [Evidence IC] [PMID 10465791]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; Rrp46p 1622000..1622683 Sugiyamaella lignohabitans 30037342 AWJ20_5134 CDS VAS1 NC_031673.1 1622987 1626175 R Mitochondrial and cytoplasmic valyl-tRNA synthetase; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IMP] [PMID 3275649]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 3275649]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO_function: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0004832 - valine-tRNA ligase activity [Evidence IEA,IEA]; GO_function: GO:0004832 - valine-tRNA ligase activity [Evidence ISS] [PMID 3294828]; GO_function: GO:0004832 - valine-tRNA ligase activity [Evidence IDA] [PMID 782885]; GO_process: GO:0006450 - regulation of translational fidelity [Evidence IEA]; GO_process: GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]; GO_process: GO:0006438 - valyl-tRNA aminoacylation [Evidence IDA] [PMID 782885]; valine--tRNA ligase complement(1622987..1626175) Sugiyamaella lignohabitans 30037343 AWJ20_5135 CDS ECM16 NC_031673.1 1627122 1627409 D Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP; predominantly nucleolar in distribution; required for 18S rRNA synthesis; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10982841]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence IDA] [PMID 10982841]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16449634]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IDA,TAS] [PMID 10982841]; Ecm16p 1627122..1627409 Sugiyamaella lignohabitans 30037344 AWJ20_5136 CDS ECM16 NC_031673.1 1627534 1630995 D Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP; predominantly nucleolar in distribution; required for 18S rRNA synthesis; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 10982841]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0032040 - small-subunit processome [Evidence IDA] [PMID 12068309]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003724 - RNA helicase activity [Evidence IDA] [PMID 10982841]; GO_function: GO:0004386 - helicase activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16449634]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IDA,TAS] [PMID 10982841]; Ecm16p 1627534..1630995 Sugiyamaella lignohabitans 30037345 AWJ20_5137 CDS SSL1 NC_031673.1 1631185 1632660 R Subunit of the core form of RNA polymerase transcription factor TFIIH; has both protein kinase and DNA-dependent ATPase/helicase activities; essential for transcription and nucleotide excision repair; interacts with Tfb4p; GO_component: GO:0000439 - core TFIIH complex [Evidence IEA]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 14500720]; GO_component: GO:0000439 - core TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0000112 - nucleotide-excision repair factor 3 complex [Evidence IDA] [PMID 8855246]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA,IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IMP] [PMID 7891722]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; TFIIH/NER complex subunit SSL1 complement(1631185..1632660) Sugiyamaella lignohabitans 30037346 AWJ20_5138 CDS RSC58 NC_031673.1 1633472 1635358 D Component of the RSC chromatin remodeling complex; RSC functions in transcriptional regulation and elongation, chromosome stability, and establishing sister chromatid cohesion; involved in telomere maintenance; GO_component: GO:0016586 - RSC complex [Evidence IDA] [PMID 12052880]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 16455496]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17188033]; GO_function: GO:0015616 - DNA translocase activity [Evidence IDA] [PMID 17918861]; GO_process: GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP] [PMID 17542652]; GO_process: GO:0016568 - chromatin modification [Evidence IEA]; GO_process: GO:0006338 - chromatin remodeling [Evidence IDA] [PMID 12052880]; GO_process: GO:0006337 - nucleosome disassembly [Evidence IDA] [PMID 16492771]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006368 - transcription elongation from RNA polymerase II promoter [Evidence IDA] [PMID 17081996]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rsc58p 1633472..1635358 Sugiyamaella lignohabitans 30037347 AWJ20_5139 CDS SMF2 NC_031673.1 1636451 1639666 R Divalent metal ion transporter involved in manganese homeostasis; has broad specificity for di-valent and tri-valent metals; post-translationally regulated by levels of metal ions; member of the Nramp family of metal transport proteins; GO_component: GO:0016023 - cytoplasmic membrane-bounded vesicle [Evidence IDA] [PMID 11027260]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0022890 - inorganic cation transmembrane transporter activity [Evidence IDA] [PMID 10574989]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0006877 - cellular cobalt ion homeostasis [Evidence IGI] [PMID 9115231]; GO_process: GO:0030026 - cellular manganese ion homeostasis [Evidence IMP] [PMID 11602606]; GO_process: GO:0006824 - cobalt ion transport [Evidence IGI] [PMID 9115231]; GO_process: GO:0006828 - manganese ion transport [Evidence IMP] [PMID 11602606]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; divalent metal ion transporter SMF2 complement(1636451..1639666) Sugiyamaella lignohabitans 30037348 AWJ20_5140 CDS NIP1 NC_031673.1 1641402 1644050 D eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3); involved in the assembly of preinitiation complex and start codon selection; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 1332047]; GO_component: GO:0010494 - cytoplasmic stress granule [Evidence IDA] [PMID 19470581]; GO_component: GO:0016282 - eukaryotic 43S preinitiation complex [Evidence IEA]; GO_component: GO:0033290 - eukaryotic 48S preinitiation complex [Evidence IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IEA,IEA]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA] [PMID 9660829]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IDA,IPI] [PMID 9671501]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 11018020]; GO_component: GO:0043614 - multi-eIF complex [Evidence IDA] [PMID 15838098]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003743 - translation initiation factor activity [Evidence IDA] [PMID 9671501]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IEA]; GO_function: GO:0031369 - translation initiation factor binding [Evidence IDA,IPI] [PMID 15145951]; GO_process: GO:0001731 - formation of translation preinitiation complex [Evidence IEA]; GO_process: GO:0006446 - regulation of translational initiation [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006413 - translational initiation [Evidence IEA,IEA,IEA]; GO_process: GO:0006413 - translational initiation [Evidence IDA] [PMID 9671501]; GO_process: GO:0006413 - translational initiation [Evidence IGI,IMP] [PMID 9722586]; Nip1p 1641402..1644050 Sugiyamaella lignohabitans 30037350 AWJ20_5141 CDS BLM10 NC_031673.1 1644374 1649617 R Proteasome activator; binds the core proteasome (CP) and stimulates proteasome-mediated protein degradation by inducing gate opening; required for sequestering CP into proteasome storage granule (PSG) during quiescent phase and for nuclear import of CP in proliferating cells; required for resistance to bleomycin, may be involved in protecting against oxidative damage; similar to mammalian PA200; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 12973301]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15778719]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22908043]; GO_component: GO:0000502 - proteasome complex [Evidence IDA] [PMID 15778719]; GO_component: GO:0005839 - proteasome core complex [Evidence IDA,IMP] [PMID 15778719]; GO_component: GO:0034515 - proteasome storage granule [Evidence IDA] [PMID 23982732]; GO_function: GO:0016504 - peptidase activator activity [Evidence IDA] [PMID 22025621]; GO_function: GO:0070628 - proteasome binding [Evidence IDA,IMP] [PMID 22025621]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP] [PMID 12973301]; GO_process: GO:0043248 - proteasome assembly [Evidence IGI] [PMID 17911101]; GO_process: GO:1990236 - proteasome core complex import into nucleus [Evidence IMP] [PMID 23982732]; GO_process: GO:0061136 - regulation of proteasomal protein catabolic process [Evidence IDA] [PMID 22025621]; GO_process: GO:1990237 - sequestration of proteasome core complex in proteasome storage granule [Evidence IMP] [PMID 23982732]; Blm10p complement(1644374..1649617) Sugiyamaella lignohabitans 30037351 AWJ20_5142 CDS AWJ20_5142 NC_031673.1 1649661 1650494 R uncharacterized protein complement(1649661..1650494) Sugiyamaella lignohabitans 30037352 AWJ20_5143 CDS AWJ20_5143 NC_031673.1 1658066 1659751 R uncharacterized protein complement(1658066..1659751) Sugiyamaella lignohabitans 30037353 AWJ20_5144 CDS AWJ20_5144 NC_031673.1 1669610 1672813 R uncharacterized protein complement(1669610..1672813) Sugiyamaella lignohabitans 30037354 AWJ20_5145 CDS AWJ20_5145 NC_031673.1 1673656 1675533 R uncharacterized protein complement(1673656..1675533) Sugiyamaella lignohabitans 30037355 AWJ20_5146 CDS KIN2 NC_031673.1 1679282 1683403 D serine/threonine protein kinase KIN2 1679282..1683403 Sugiyamaella lignohabitans 30037356 AWJ20_5147 CDS AVO2 NC_031673.1 1683805 1685922 R Component of a complex containing the Tor2p kinase and other proteins; complex may have a role in regulation of cell growth; GO_component: GO:0031932 - TORC2 complex [Evidence IPI] [PMID 12408816]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0031929 - TOR signaling [Evidence IC] [PMID 12408816]; GO_process: GO:0030950 - establishment or maintenance of actin cytoskeleton polarity [Evidence IPI] [PMID 12408816]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IPI] [PMID 12408816]; GO_process: GO:0001558 - regulation of cell growth [Evidence IPI] [PMID 12408816]; Avo2p complement(1683805..1685922) Sugiyamaella lignohabitans 30037357 AWJ20_5148 CDS SNZ1 NC_031673.1 1688655 1689542 D Protein involved in vitamin B6 biosynthesis; member of a stationary phase-induced gene family; coregulated with SNO1; interacts with Sno1p and with Yhr198p, perhaps as a multiprotein complex containing other Snz and Sno proteins; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004359 - glutaminase activity [Evidence IDA] [PMID 14764090]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]; GO_process: GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO_process: GO:0008615 - pyridoxine biosynthetic process [Evidence IMP] [PMID 12271461]; GO_process: GO:0008615 - pyridoxine biosynthetic process [Evidence IMP] [PMID 14764090]; GO_process: GO:0009228 - thiamine biosynthetic process [Evidence IMP] [PMID 12271461]; pyridoxine biosynthesis protein SNZ1 1688655..1689542 Sugiyamaella lignohabitans 30037358 AWJ20_5149 CDS AWJ20_5149 NC_031673.1 1688948 1689643 R conserved hypothetical membrane protein complement(1688948..1689643) Sugiyamaella lignohabitans 30037359 AWJ20_5152 CDS RPL1A NC_031673.1 1693005 1693655 D Ribosomal 60S subunit protein L1A; N-terminally acetylated; homologous to mammalian ribosomal protein L10A and bacterial L1; RPL1A has a paralog, RPL1B, that arose from the whole genome duplication; rpl1a rpl1b double null mutation is lethal; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022625 - cytosolic large ribosomal subunit [Evidence IDA] [PMID 11983894]; GO_component: GO:0015934 - large ribosomal subunit [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IC] [PMID 11983894]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 11983894]; GO_process: GO:0006412 - translation [Evidence IEA]; ribosomal 60S subunit protein L1A 1693005..1693655 Sugiyamaella lignohabitans 30037363 AWJ20_5153 CDS PCL7 NC_031673.1 1695329 1696837 D Pho85p cyclin of the Pho80p subfamily; forms a functional kinase complex with Pho85p which phosphorylates Mmr1p and is regulated by Pho81p; involved in glycogen metabolism, expression is cell-cycle regulated; PCL7 has a paralog, PCL6, that arose from the whole genome duplication; GO_component: GO:0000307 - cyclin-dependent protein kinase holoenzyme complex [Evidence IPI] [PMID 16611745]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16611745]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IDA] [PMID 12407105]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0005977 - glycogen metabolic process [Evidence IEA]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IDA] [PMID 12407105]; GO_process: GO:0005979 - regulation of glycogen biosynthetic process [Evidence IGI] [PMID 11602261]; GO_process: GO:0005981 - regulation of glycogen catabolic process [Evidence IGI] [PMID 11602261]; GO_process: GO:0031647 - regulation of protein stability [Evidence IMP] [PMID 16611745]; Pcl7p 1695329..1696837 Sugiyamaella lignohabitans 30037364 AWJ20_5154 CDS AWJ20_5154 NC_031673.1 1697474 1698217 D Uncharacterized protein YGL138C 1697474..1698217 Sugiyamaella lignohabitans 30037365 AWJ20_5155 CDS FLC1 NC_031673.1 1698471 1700603 R Putative FAD transporter; required for uptake of FAD into endoplasmic reticulum; involved in cell wall maintenance; FLC1 has a paralog, FLC3, that arose from the whole genome duplication; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 16717099]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0015230 - FAD transmembrane transporter activity [Evidence IMP] [PMID 16717099]; GO_process: GO:0015883 - FAD transport [Evidence IMP] [PMID 16717099]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IMP] [PMID 16717099]; GO_process: GO:0006457 - protein folding [Evidence IMP] [PMID 16717099]; GO_process: GO:0006810 - transport [Evidence IEA]; Flc1p complement(1698471..1700603) Sugiyamaella lignohabitans 30037366 AWJ20_5156 CDS AWJ20_5156 NC_031673.1 1703965 1705815 D uncharacterized protein 1703965..1705815 Sugiyamaella lignohabitans 30037367 AWJ20_5157 CDS CYS4 NC_031673.1 1709416 1710774 R Cystathionine beta-synthase; catalyzes synthesis of cystathionine from serine and homocysteine, the first committed step in cysteine biosynthesis; responsible for hydrogen sulfide generation; advances passage through START by promoting cell growth which requires catalytic activity, and reducing critical cell size independent of catalytic activity; mutations in human ortholog cause homocystinuria; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 23222640]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO_function: GO:0004122 - cystathionine beta-synthase activity [Evidence IEA,IEA]; GO_function: GO:0004122 - cystathionine beta-synthase activity [Evidence IMP] [PMID 10509018]; GO_function: GO:0004122 - cystathionine beta-synthase activity [Evidence IDA] [PMID 10766767]; GO_function: GO:0004122 - cystathionine beta-synthase activity [Evidence IDA] [PMID 11948191]; GO_function: GO:0004122 - cystathionine beta-synthase activity [Evidence IDA] [PMID 19264153]; GO_function: GO:0004122 - cystathionine beta-synthase activity [Evidence IMP] [PMID 8366024]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0008652 - cellular amino acid biosynthetic process [Evidence IEA]; GO_process: GO:0019344 - cysteine biosynthetic process [Evidence IEA,IEA]; GO_process: GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]; GO_process: GO:0006535 - cysteine biosynthetic process from serine [Evidence IDA] [PMID 11948191]; GO_process: GO:0019343 - cysteine biosynthetic process via cystathionine [Evidence IEA]; GO_process: GO:0019343 - cysteine biosynthetic process via cystathionine [Evidence IMP] [PMID 10509018]; GO_process: GO:0019343 - cysteine biosynthetic process via cystathionine [Evidence IMP] [PMID 8366024]; GO_process: GO:0070814 - hydrogen sulfide biosynthetic process [Evidence IDA] [PMID 19531479]; GO_process: GO:0019346 - transsulfuration [Evidence IMP] [PMID 8366024]; GO_process: GO:0007089 - traversing start control point of mitotic cell cycle [Evidence IMP] [PMID 22438835]; cystathionine beta-synthase CYS4 complement(1709416..1710774) Sugiyamaella lignohabitans 30037368 AWJ20_5158 CDS AWJ20_5158 NC_031673.1 1711634 1712974 R uncharacterized protein complement(1711634..1712974) Sugiyamaella lignohabitans 30037369 AWJ20_5159 CDS AWJ20_5159 NC_031673.1 1714069 1715565 D uncharacterized protein 1714069..1715565 Sugiyamaella lignohabitans 30037370 AWJ20_5160 CDS PET112 NC_031673.1 1715755 1716633 R Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex; involved in the formation of Q-tRNAQ; mutation is functionally complemented by the bacterial GatB ortholog; GO_component: GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]; GO_component: GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IDA] [PMID 19417106]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 19417106]; GO_component: GO:0005739 - mitochondrion [Evidence IGI] [PMID 9287027]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA,IEA]; GO_function: GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO_function: GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IDA] [PMID 19417106]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation [Evidence IEA]; GO_process: GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation [Evidence IDA] [PMID 19417106]; GO_process: GO:0032543 - mitochondrial translation [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 8082172]; GO_process: GO:0006412 - translation [Evidence IEA]; glutamyl-tRNA(Gln) amidotransferase subunit PET112 complement(1715755..1716633) Sugiyamaella lignohabitans 30037372 AWJ20_5161 CDS APT1 NC_031673.1 1718502 1719035 D Adenine phosphoribosyltransferase; catalyzes the formation of AMP from adenine and 5-phosphoribosylpyrophosphate; involved in the salvage pathway of purine nucleotide biosynthesis; APT1 has a paralog, APT2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA,IEA]; GO_function: GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IDA] [PMID 9864350]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006167 - AMP biosynthetic process [Evidence TAS] [PMID 9357956]; GO_process: GO:0044209 - AMP salvage [Evidence IEA]; GO_process: GO:0006168 - adenine salvage [Evidence IEA]; GO_process: GO:0006168 - adenine salvage [Evidence IMP] [PMID 9864350]; GO_process: GO:0009116 - nucleoside metabolic process [Evidence IEA]; GO_process: GO:0006166 - purine ribonucleoside salvage [Evidence IEA]; adenine phosphoribosyltransferase APT1 1718502..1719035 Sugiyamaella lignohabitans 30037373 AWJ20_5162 CDS KIN28 NC_031673.1 1719724 1720716 D Serine/threonine protein kinase, subunit of transcription factor TFIIH; involved in transcription initiation at RNA polymerase II promoters; phosphorylates Ser5 residue of the PolII C-terminal domain (CTD) at gene promoters; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0070985 - TFIIK complex [Evidence IDA] [PMID 11839796]; GO_component: GO:0070985 - TFIIK complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity [Evidence IEA]; GO_function: GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity [Evidence IDA] [PMID 7760796]; GO_function: GO:0008353 - RNA polymerase II carboxy-terminal domain kinase activity [Evidence IDA,IMP] [PMID 9702190]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0019912 - cyclin-dependent protein kinase activating kinase activity [Evidence IDA,IMP] [PMID 7760796]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004672 - protein kinase activity [Evidence IDA] [PMID 16319894]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0006370 - 7-methylguanosine mRNA capping [Evidence IMP] [PMID 22689984]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 11839796]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 7760796]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA,IMP] [PMID 9702190]; GO_process: GO:1901921 - phosphorylation of RNA polymerase II C-terminal domain involved in recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex [Evidence IMP,IPI] [PMID 10594013]; GO_process: GO:1900018 - phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex [Evidence IMP] [PMID 10594013]; GO_process: GO:1900018 - phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex [Evidence IMP] [PMID 19666497]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 14749387]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 16319894]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]; GO_process: GO:0006360 - transcription from RNA polymerase I promoter [Evidence IMP] [PMID 12015980]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7760796]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IMP] [PMID 7783209]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; TFIIH complex serine/threonine-protein kinase subunit KIN28 1719724..1720716 Sugiyamaella lignohabitans 30037374 AWJ20_5163 CDS OST3 NC_031673.1 1721355 1722329 D Gamma subunit of the oligosaccharyltransferase complex of the ER lumen; complex catalyzes asparagine-linked glycosylation of newly synthesized proteins; Ost3p is important for N-glycosylation of a subset of proteins; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence IMP] [PMID 7622558]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 10358084]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 16297388]; GO_component: GO:0008250 - oligosaccharyltransferase complex [Evidence IPI] [PMID 9405463]; GO_function: GO:0004579 - dolichyl-diphosphooligosaccharide-protein glycotransferase activity [Evidence IMP] [PMID 7622558]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO_process: GO:0006487 - protein N-linked glycosylation [Evidence IPI] [PMID 9405463]; GO_process: GO:0035269 - protein O-linked mannosylation [Evidence IGI] [PMID 22492205]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 10358084]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 7622558]; Ost3p 1721355..1722329 Sugiyamaella lignohabitans 30037375 AWJ20_5164 CDS CYK3 NC_031673.1 1722533 1725772 R SH3-domain protein located in the bud neck and cytokinetic actin ring; relocalizes from bud neck to nucleus upon DNA replication stress; activates the chitin synthase activity of Chs2p during cytokinesis; suppressor of growth and cytokinesis defects of chs2 phospho-mutants; GO_component: GO:0044697 - HICS complex [Evidence IPI] [PMID 22623719]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 14562095]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 21498574]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0000142 - cellular bud neck contractile ring [Evidence IDA] [PMID 21498574]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IGI] [PMID 22956544]; GO_process: GO:0000917 - barrier septum assembly [Evidence IGI,IPI] [PMID 19528296]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; Cyk3p complement(1722533..1725772) Sugiyamaella lignohabitans 30037376 AWJ20_5165 CDS AWJ20_5165 NC_031673.1 1727485 1729965 D uncharacterized protein 1727485..1729965 Sugiyamaella lignohabitans 30037377 AWJ20_5166 CDS AWJ20_5166 NC_031673.1 1730163 1731584 R uncharacterized protein complement(1730163..1731584) Sugiyamaella lignohabitans 30037378 AWJ20_5167 CDS AWJ20_5167 NC_031673.1 1732292 1733137 D uncharacterized protein 1732292..1733137 Sugiyamaella lignohabitans 30037379 AWJ20_5168 CDS SSC1 NC_031673.1 1735763 1737736 R Hsp70 family ATPase; constituent of the import motor component of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); involved in protein translocation and folding; subunit of SceI endonuclease; SSC1 has a paralog, ECM10, that arose from the whole genome duplication; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 7935837]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0042645 - mitochondrial nucleoid [Evidence IDA] [PMID 15692048]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 14517234]; GO_component: GO:0001405 - presequence translocase-associated import motor [Evidence IDA] [PMID 14638855]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 11096111]; GO_function: GO:0030234 - enzyme regulator activity [Evidence IDA] [PMID 10464305]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_process: GO:0032079 - positive regulation of endodeoxyribonuclease activity [Evidence IDA] [PMID 10464305]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IMP] [PMID 10779357]; GO_process: GO:0030150 - protein import into mitochondrial matrix [Evidence IDA] [PMID 8654364]; GO_process: GO:0042026 - protein refolding [Evidence IMP] [PMID 16460754]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 9973563]; GO_process: GO:0043335 - protein unfolding [Evidence IMP] [PMID 8408192]; GO_process: GO:0006950 - response to stress [Evidence IEA]; Hsp70 family ATPase SSC1 complement(1735763..1737736) Sugiyamaella lignohabitans 30037380 AWJ20_5169 CDS GDH2 NC_031673.1 1745564 1749026 D NAD(+)-dependent glutamate dehydrogenase; degrades glutamate to ammonia and alpha-ketoglutarate; expression sensitive to nitrogen catabolite repression and intracellular ammonia levels; genetically interacts with GDH3 by suppressing stress-induced apoptosis; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004352 - glutamate dehydrogenase (NAD+) activity [Evidence IEA,IEA]; GO_function: GO:0004352 - glutamate dehydrogenase (NAD+) activity [Evidence IMP,ISS] [PMID 1975578]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; GO_process: GO:0019551 - glutamate catabolic process to 2-oxoglutarate [Evidence IEA]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IMP] [PMID 1975578]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; glutamate dehydrogenase (NAD(+)) join(1745564..1745623,1746048..1749026) Sugiyamaella lignohabitans 30037381 AWJ20_5170 CDS FRE7 NC_031673.1 1749983 1752097 D Putative ferric reductase with similarity to Fre2p; expression induced by low copper levels; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17553781]; GO_function: GO:0052851 - ferric-chelate reductase (NADPH) activity [Evidence IEA]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IGI] [PMID 17553781]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence IDA] [PMID 17681937]; GO_function: GO:0000293 - ferric-chelate reductase activity [Evidence ISA] [PMID 9726978]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0015677 - copper ion import [Evidence IGI] [PMID 17553781]; GO_process: GO:0006825 - copper ion transport [Evidence IEA]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0055072 - iron ion homeostasis [Evidence IEA]; GO_process: GO:0006826 - iron ion transport [Evidence IGI] [PMID 17553781]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Fre7p 1749983..1752097 Sugiyamaella lignohabitans 30037383 AWJ20_5171 CDS RRP12 NC_031673.1 1753151 1756465 D Protein required for export of the ribosomal subunits; associates with the RNA components of the pre-ribosomes; has a role in nuclear import in association with Pse1p; also plays a role in the cell cycle and the DNA damage response; contains HEAT-repeats; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 12150911]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14729571]; GO_component: GO:0005840 - ribosome [Evidence TAS] [PMID 12067653]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence TAS] [PMID 12067653]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; GO_process: GO:0042254 - ribosome biogenesis [Evidence TAS] [PMID 12067653]; Rrp12p 1753151..1756465 Sugiyamaella lignohabitans 30037384 AWJ20_5172 CDS AWJ20_5172 NC_031673.1 1761387 1763150 R uncharacterized protein complement(1761387..1763150) Sugiyamaella lignohabitans 30037385 AWJ20_5173 CDS AWJ20_5173 NC_031673.1 1766138 1768222 R uncharacterized protein complement(1766138..1768222) Sugiyamaella lignohabitans 30037386 AWJ20_5174 CDS AWJ20_5174 NC_031673.1 1769944 1772577 D uncharacterized protein 1769944..1772577 Sugiyamaella lignohabitans 30037387 AWJ20_5175 CDS AWJ20_5175 NC_031673.1 1773145 1773702 R uncharacterized protein complement(1773145..1773702) Sugiyamaella lignohabitans 30037388 AWJ20_5176 CDS AWJ20_5176 NC_031673.1 1773761 1774207 R putative type II inositol 1,4,5-trisphosphate 5-phosphatase complement(1773761..1774207) Sugiyamaella lignohabitans 30037389 AWJ20_5177 CDS GDI1 NC_031673.1 1777269 1778714 R GDP dissociation inhibitor; regulates vesicle traffic in secretory pathways by regulating the dissociation of GDP from the Sec4/Ypt/rab family of GTP binding proteins; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005093 - Rab GDP-dissociation inhibitor activity [Evidence IEA]; GO_function: GO:0005093 - Rab GDP-dissociation inhibitor activity [Evidence IDA] [PMID 8157010]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0050790 - regulation of catalytic activity [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IMP] [PMID 8157010]; Gdi1p complement(1777269..1778714) Sugiyamaella lignohabitans 30037390 AWJ20_5178 CDS AWJ20_5178 NC_031673.1 1781313 1781744 R uncharacterized protein complement(1781313..1781744) Sugiyamaella lignohabitans 30037391 AWJ20_5179 CDS POM152 NC_031673.1 1782485 1785379 D Glycoprotein subunit of transmembrane ring of nuclear pore complex; contributes to nucleocytoplasmic transport, nuclear pore complex (NPC) biogenesis and spindle pole body duplication; homologous to human NUP210; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005641 - nuclear envelope lumen [Evidence IDA] [PMID 9988776]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 7559775]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 8138573]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 9988776]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA] [PMID 10684247]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA,IPI] [PMID 19414609]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA] [PMID 7559775]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0043495 - protein anchor [Evidence IDA] [PMID 7559775]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IC] [PMID 10684247]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006999 - nuclear pore organization [Evidence IGI] [PMID 19414609]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IC] [PMID 8138573]; GO_process: GO:0006606 - protein import into nucleus [Evidence IDA] [PMID 7559775]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0030474 - spindle pole body duplication [Evidence IGI] [PMID 20713690]; GO_process: GO:0006810 - transport [Evidence IEA]; Pom152p 1782485..1785379 Sugiyamaella lignohabitans 30037392 AWJ20_5180 CDS POM152 NC_031673.1 1785430 1786467 D Glycoprotein subunit of transmembrane ring of nuclear pore complex; contributes to nucleocytoplasmic transport, nuclear pore complex (NPC) biogenesis and spindle pole body duplication; homologous to human NUP210; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005641 - nuclear envelope lumen [Evidence IDA] [PMID 9988776]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 7559775]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 8138573]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 9988776]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA] [PMID 10684247]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA,IPI] [PMID 19414609]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA] [PMID 7559775]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0043495 - protein anchor [Evidence IDA] [PMID 7559775]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IC] [PMID 10684247]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006999 - nuclear pore organization [Evidence IGI] [PMID 19414609]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IC] [PMID 8138573]; GO_process: GO:0006606 - protein import into nucleus [Evidence IDA] [PMID 7559775]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0030474 - spindle pole body duplication [Evidence IGI] [PMID 20713690]; GO_process: GO:0006810 - transport [Evidence IEA]; Pom152p 1785430..1786467 Sugiyamaella lignohabitans 30037394 AWJ20_5181 CDS BMT6 NC_031673.1 1786964 1787953 D Methyltransferase required for m3U2843 methylation of the 25S rRNA; S-adenosylmethionine-dependent; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YLR063W is not an essential gene; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24335083]; GO_function: GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence ISM] [PMID 19351663]; GO_function: GO:0070042 - rRNA (uridine-N3-)-methyltransferase activity [Evidence IMP] [PMID 24335083]; GO_process: GO:0070475 - rRNA base methylation [Evidence IMP] [PMID 24335083]; Bmt6p 1786964..1787953 Sugiyamaella lignohabitans 30037395 AWJ20_5182 CDS AWJ20_5182 NC_031673.1 1790100 1790714 R uncharacterized protein complement(1790100..1790714) Sugiyamaella lignohabitans 30037396 AWJ20_5183 CDS RAD28 NC_031673.1 1791156 1792238 R Protein involved in DNA repair; related to the human CSA protein that is involved in transcription-coupled repair nucleotide excision repair; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 8830695]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IGI] [PMID 8830695]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; Rad28p complement(1791156..1792238) Sugiyamaella lignohabitans 30037397 AWJ20_5184 CDS MDM1 NC_031673.1 1792740 1796435 R Intermediate filament protein; required for nuclear and mitochondrial transmission to daughter buds; contains a Phox homology (PX) domain and specifically binds phosphatidylinositol 3-phosphate (PtdIns-3-P); GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence TAS] [PMID 9245780]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005882 - intermediate filament [Evidence TAS] [PMID 9891785]; GO_function: GO:0035091 - phosphatidylinositol binding [Evidence IEA]; GO_function: GO:0032266 - phosphatidylinositol-3-phosphate binding [Evidence IDA] [PMID 11557775]; GO_function: GO:0005200 - structural constituent of cytoskeleton [Evidence TAS] [PMID 9891785]; GO_process: GO:0000001 - mitochondrion inheritance [Evidence IDA] [PMID 9245780]; GO_process: GO:0007005 - mitochondrion organization [Evidence TAS] [PMID 9891785]; GO_process: GO:0007097 - nuclear migration [Evidence TAS] [PMID 9891785]; GO_process: GO:0038032 - termination of G-protein coupled receptor signaling pathway [Evidence IEA]; Mdm1p complement(1792740..1796435) Sugiyamaella lignohabitans 30037398 AWJ20_5185 CDS AWJ20_5185 NC_031673.1 1806064 1806567 R uncharacterized protein complement(1806064..1806567) Sugiyamaella lignohabitans 30037399 AWJ20_5186 CDS PKC1 NC_031673.1 1806970 1807602 R Protein serine/threonine kinase; essential for cell wall remodeling during growth; localized to sites of polarized growth and the mother-daughter bud neck; homolog of the alpha, beta, and gamma isoforms of mammalian protein kinase C (PKC); GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11545731]; GO_component: GO:0005856 - cytoskeleton [Evidence IDA] [PMID 15910746]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11545731]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_component: GO:0032165 - prospore septin filament array [Evidence IDA] [PMID 24390141]; GO_component: GO:0030427 - site of polarized growth [Evidence IDA] [PMID 10893184]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004697 - protein kinase C activity [Evidence IEA]; GO_function: GO:0004697 - protein kinase C activity [Evidence IDA] [PMID 8207005]; GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]; GO_process: GO:0007015 - actin filament organization [Evidence IGI] [PMID 12810699]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0033962 - cytoplasmic mRNA processing body assembly [Evidence IMP] [PMID 21163942]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IEA]; GO_process: GO:0035556 - intracellular signal transduction [Evidence IMP] [PMID 7874200]; GO_process: GO:0030242 - peroxisome degradation [Evidence IMP] [PMID 20385774]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IDA] [PMID 8207005]; GO_process: GO:0060237 - regulation of fungal-type cell wall organization [Evidence IMP] [PMID 7874200]; GO_process: GO:0060211 - regulation of nuclear-transcribed mRNA poly(A) tail shortening [Evidence IMP] [PMID 21163942]; GO_process: GO:0007165 - signal transduction [Evidence IEA]; GO_process: GO:0007165 - signal transduction [Evidence IMP] [PMID 7874200]; protein kinase C complement(1806970..1807602) Sugiyamaella lignohabitans 30037400 AWJ20_5187 CDS NUP188 NC_031673.1 1808456 1812679 R Subunit of the inner ring of the nuclear pore complex (NPC); contributes to NPC organization and nucleocytoplasmic transport; homologous to human NUP188; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 10684247]; GO_component: GO:0044611 - nuclear pore inner ring [Evidence IDA] [PMID 18046406]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IGI] [PMID 16361228]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IGI] [PMID 8682855]; GO_process: GO:0031990 - mRNA export from nucleus in response to heat stress [Evidence IMP] [PMID 18258809]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006999 - nuclear pore organization [Evidence IGI,IMP] [PMID 8682855]; GO_process: GO:0006606 - protein import into nucleus [Evidence IGI] [PMID 16361228]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Nup188p complement(1808456..1812679) Sugiyamaella lignohabitans 30037401 AWJ20_5188 CDS AWJ20_5188 NC_031673.1 1814194 1814796 R uncharacterized protein complement(1814194..1814796) Sugiyamaella lignohabitans 30037402 AWJ20_5189 CDS AWJ20_5189 NC_031673.1 1815781 1816899 D FAD-dependent oxidoreductase, putative 1815781..1816899 Sugiyamaella lignohabitans 30037403 AWJ20_5190 CDS VMA8 NC_031673.1 1817142 1817780 R Subunit D of the V1 peripheral membrane domain of V-ATPase; part of the electrogenic proton pump found throughout the endomembrane system; plays a role in the coupling of proton transport and ATP hydrolysis; the V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase) has eight subunits; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence TAS] [PMID 11717306]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 10224039]; GO_component: GO:0000221 - vacuolar proton-transporting V-type ATPase, V1 domain [Evidence TAS] [PMID 9442887]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 10224039]; GO_function: GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence TAS] [PMID 9442887]; GO_process: GO:0006811 - ion transport [Evidence IEA]; GO_process: GO:0015992 - proton transport [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 10224039]; GO_process: GO:0007035 - vacuolar acidification [Evidence TAS] [PMID 9442887]; H(+)-transporting V1 sector ATPase subunit D complement(1817142..1817780) Sugiyamaella lignohabitans 30037405 AWJ20_5191 CDS DUR1,2 NC_031673.1 1820562 1826050 D Urea amidolyase; contains both urea carboxylase and allophanate hydrolase activities, degrades urea to CO2 and NH3; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004039 - allophanate hydrolase activity [Evidence IEA]; GO_function: GO:0004039 - allophanate hydrolase activity [Evidence IMP] [PMID 6105114]; GO_function: GO:0004075 - biotin carboxylase activity [Evidence IEA]; GO_function: GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA,IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016874 - ligase activity [Evidence IEA,IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO_function: GO:0004847 - urea carboxylase activity [Evidence IEA]; GO_function: GO:0004847 - urea carboxylase activity [Evidence IMP] [PMID 6105114]; GO_process: GO:0000256 - allantoin catabolic process [Evidence TAS] [PMID 1938916]; GO_process: GO:0006525 - arginine metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IEA]; GO_process: GO:0043419 - urea catabolic process [Evidence IMP] [PMID 6105114]; bifunctional urea carboxylase/allophanate hydrolase join(1820562..1820744,1820813..1826050) Sugiyamaella lignohabitans 30037406 AWJ20_5192 CDS CAB3 NC_031673.1 1826378 1827538 R Subunit of PPCDC and CoA-SPC complexes involved in CoA biosynthesis; subunits of the phosphopantothenoylcysteine decarboxylase (PPCDC) complex are: Cab3p, Sis2p, Vhs3p, while the subunits of the CoA-synthesizing protein complex (CoA-SPC) are: Cab2p, Cab3p, Cab4p, and Cab5p as well as Sis2p and Vhs3p; null mutant lethality is complemented by E. coli coaBC; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14690591]; GO_component: GO:0071513 - phosphopantothenoylcysteine decarboxylase complex [Evidence IDA] [PMID 19915539]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence ISS] [PMID 10592175]; GO_function: GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence ISS] [PMID 14690591]; GO_function: GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence IDA,IMP] [PMID 19915539]; GO_function: GO:0017076 - purine nucleotide binding [Evidence ISS] [PMID 7705654]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 10592175]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence ISS] [PMID 14690591]; GO_process: GO:0015937 - coenzyme A biosynthetic process [Evidence IGI] [PMID 19266201]; GO_process: GO:0009651 - response to salt stress [Evidence IGI] [PMID 8923737]; phosphopantothenoylcysteine decarboxylase complex subunit CAB3 complement(1826378..1827538) Sugiyamaella lignohabitans 30037407 AWJ20_5193 CDS AWJ20_5193 NC_031673.1 1832043 1832771 R uncharacterized protein complement(1832043..1832771) Sugiyamaella lignohabitans 30037408 AWJ20_5194 CDS YPK9 NC_031673.1 1833688 1838067 R Vacuolar protein with a possible role in sequestering heavy metals; has similarity to the type V P-type ATPase Spf1p; homolog of human ATP13A2 (PARK9), mutations in which are associated with Parkinson disease and Kufor-Rakeb syndrome; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19001347]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 19182805]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0019829 - cation-transporting ATPase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0006812 - cation transport [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Ypk9p complement(1833688..1838067) Sugiyamaella lignohabitans 30037409 AWJ20_5195 CDS AWJ20_5195 NC_031673.1 1838946 1840478 R uncharacterized protein complement(1838946..1840478) Sugiyamaella lignohabitans 30037410 AWJ20_5196 CDS ERG5 NC_031673.1 1841848 1843425 D C-22 sterol desaturase; a cytochrome P450 enzyme that catalyzes the formation of the C-22(23) double bond in the sterol side chain in ergosterol biosynthesis; may be a target of azole antifungal drugs; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 14562095]; GO_function: GO:0000249 - C-22 sterol desaturase activity [Evidence IDA] [PMID 8543054]; GO_function: GO:0020037 - heme binding [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IDA] [PMID 8543054]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 8635732]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; C-22 sterol desaturase 1841848..1843425 Sugiyamaella lignohabitans 30037411 AWJ20_5197 CDS AWJ20_5197 NC_031673.1 1845245 1847062 R zf-C2H2 type zinc finger protein complement(1845245..1847062) Sugiyamaella lignohabitans 30037412 AWJ20_5198 CDS TNA1 NC_031673.1 1847615 1849027 R High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p complement(1847615..1849027) Sugiyamaella lignohabitans 30037413 AWJ20_5199 CDS JLP1 NC_031673.1 1850007 1851191 R Fe(II)-dependent sulfonate/alpha-ketoglutarate dioxygenase; involved in sulfonate catabolism for use as a sulfur source; contains sequence that resembles a J domain (typified by the E. coli DnaJ protein); induced by sulphur starvation; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0051213 - dioxygenase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0000907 - sulfonate dioxygenase activity [Evidence IDA] [PMID 10482536]; GO_process: GO:0046306 - alkanesulfonate catabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0044273 - sulfur compound catabolic process [Evidence IMP] [PMID 10482536]; Jlp1p complement(1850007..1851191) Sugiyamaella lignohabitans 30037414 AWJ20_5200 CDS AFG1 NC_031673.1 1852165 1853433 R Protein that may act as a chaperone for cytochrome c oxidase subunits; conserved protein; may act as a chaperone in the degradation of misfolded or unassembled cytochrome c oxidase subunits; localized to matrix face of the mitochondrial inner membrane; member of the AAA family but lacks a protease domain; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 17430883]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 17430883]; GO_process: GO:0006515 - misfolded or incompletely synthesized protein catabolic process [Evidence IMP] [PMID 17430883]; GO_process: GO:0016558 - protein import into peroxisome matrix [Evidence IMP] [PMID 19118449]; Afg1p complement(1852165..1853433) Sugiyamaella lignohabitans 30037417 AWJ20_5201 CDS AWJ20_5201 NC_031673.1 1855682 1857529 D uncharacterized protein 1855682..1857529 Sugiyamaella lignohabitans 30037418 AWJ20_5202 CDS CDC11 NC_031673.1 1859091 1859846 D Component of the septin ring that is required for cytokinesis; septins are GTP-binding proteins that assemble into rod-like hetero-oligomers that can associate with other rods to form filaments; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins between mother and daughter cells; GO_component: GO:0005619 - ascospore wall [Evidence IDA] [PMID 8636217]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 1934633]; GO_component: GO:0005881 - cytoplasmic microtubule [Evidence IDA] [PMID 18826657]; GO_component: GO:0001400 - mating projection base [Evidence IDA] [PMID 8791410]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_component: GO:0072687 - meiotic spindle [Evidence IDA] [PMID 18826657]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 18826657]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_component: GO:0031105 - septin complex [Evidence IDA] [PMID 18550837]; GO_component: GO:0031105 - septin complex [Evidence IPI] [PMID 9813094]; GO_component: GO:0032160 - septin filament array [Evidence IDA] [PMID 15282341]; GO_component: GO:0005876 - spindle microtubule [Evidence IDA] [PMID 18826657]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 18550837]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IC] [PMID 10882120]; GO_process: GO:0000281 - mitotic cytokinesis [Evidence IMP] [PMID 4950437]; GO_process: GO:0045860 - positive regulation of protein kinase activity [Evidence IDA] [PMID 14527412]; septin CDC11 1859091..1859846 Sugiyamaella lignohabitans 30037419 AWJ20_5203 CDS AWJ20_5203 NC_031673.1 1860082 1861047 R uncharacterized protein complement(1860082..1861047) Sugiyamaella lignohabitans 30037420 AWJ20_5204 CDS ENV9 NC_031673.1 1861941 1862891 R Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and defects in vacuolar morphology; has similarity to oxidoreductases, found in lipid particles; required for replication of Brome mosaic virus in S. cerevisiae, a model system for studying replication of positive-strand RNA viruses in their natural hosts; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence ISS] [PMID 8972580]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0006624 - vacuolar protein processing [Evidence IMP] [PMID 21912603]; GO_process: GO:0007033 - vacuole organization [Evidence IMP] [PMID 21912603]; Env9p complement(1861941..1862891) Sugiyamaella lignohabitans 30037421 AWJ20_5205 CDS EXG2 NC_031673.1 1869293 1871614 R Exo-1,3-beta-glucanase; involved in cell wall beta-glucan assembly; may be anchored to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor; GO_component: GO:0031225 - anchored component of membrane [Evidence IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 7875558]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0004338 - glucan exo-1,3-beta-glucosidase activity [Evidence IEA]; GO_function: GO:0004338 - glucan exo-1,3-beta-glucosidase activity [Evidence IDA] [PMID 7875558]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IC] [PMID 7875558]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Exg2p complement(1869293..1871614) Sugiyamaella lignohabitans 30037422 AWJ20_5206 CDS AWJ20_5206 NC_031673.1 1874709 1876517 R uncharacterized protein complement(1874709..1876517) Sugiyamaella lignohabitans 30037423 AWJ20_5207 CDS MLP1 NC_031673.1 1881191 1886689 D Myosin-like protein associated with the nuclear envelope; connects the nuclear pore complex with the nuclear interior; involved with Tel1p in telomere length control; involved with Pml1p and Pml39p in nuclear retention of unspliced mRNAs; MLP1 has a paralog, MLP2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 10085285]; GO_component: GO:0005643 - nuclear pore [Evidence IEA]; GO_component: GO:0044615 - nuclear pore nuclear basket [Evidence IDA] [PMID 24152732]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 10085285]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IPI] [PMID 15692572]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 16027220]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0043021 - ribonucleoprotein complex binding [Evidence IGI,IPI] [PMID 15692572]; GO_process: GO:0006281 - DNA repair [Evidence IEA]; GO_process: GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:1901925 - negative regulation of protein import into nucleus during spindle assembly checkpoint [Evidence IGI] [PMID 23177738]; GO_process: GO:0071048 - nuclear retention of unspliced pre-mRNA at the site of transcription [Evidence IGI,IMP] [PMID 14718167]; GO_process: GO:0016973 - poly(A)+ mRNA export from nucleus [Evidence IMP] [PMID 21036941]; GO_process: GO:0006606 - protein import into nucleus [Evidence IEA]; GO_process: GO:0006606 - protein import into nucleus [Evidence IGI] [PMID 10085285]; GO_process: GO:0090204 - protein localization to nuclear pore [Evidence IMP] [PMID 19933151]; GO_process: GO:0034398 - telomere tethering at nuclear periphery [Evidence IGI] [PMID 10638763]; GO_process: GO:0090203 - transcriptional activation by promoter-terminator looping [Evidence IMP] [PMID 19933151]; GO_process: GO:0006810 - transport [Evidence IEA]; Mlp1p join(1881191..1883932,1883996..1886689) Sugiyamaella lignohabitans 30037424 AWJ20_5208 CDS MCD4 NC_031673.1 1886804 1889521 R Protein involved in GPI anchor synthesis; multimembrane-spanning protein that localizes to the endoplasmic reticulum; highly conserved among eukaryotes; GPI stands for glycosylphosphatidylinositol; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10069808]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA,IEA]; GO_component: GO:0009277 - fungal-type cell wall [Evidence IDA] [PMID 12023081]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 10514566]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0051377 - mannose-ethanolamine phosphotransferase activity [Evidence IMP] [PMID 16704983]; GO_function: GO:0051377 - mannose-ethanolamine phosphotransferase activity [Evidence IMP] [PMID 17311586]; GO_function: GO:0016740 - transferase activity [Evidence IEA,IEA]; GO_process: GO:0015867 - ATP transport [Evidence IDA] [PMID 12807869]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IDA] [PMID 12023081]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 16704983]; GO_process: GO:0006506 - GPI anchor biosynthetic process [Evidence IMP] [PMID 17311586]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; Mcd4p complement(1886804..1889521) Sugiyamaella lignohabitans 30037425 AWJ20_5209 CDS SIS1 NC_031673.1 1889982 1892521 R type II HSP40 co-chaperone SIS1 complement(join(1889982..1892362,1892485..1892521)) Sugiyamaella lignohabitans 30037426 AWJ20_5210 CDS DGK1 NC_031673.1 1897418 1898851 D weak similarity to sphingosine kinase/eukaryotic diacylglycerol kinase involved in Protein Kinase C activation; similar to C terminus of predicted N. crassa protein (NCU06337.1); allele of CaO19.12149; putative sphingosine kinase-like protein 1897418..1898851 Sugiyamaella lignohabitans 30037428 AWJ20_5211 CDS AWJ20_5211 NC_031673.1 1899589 1900881 D uncharacterized protein 1899589..1900881 Sugiyamaella lignohabitans 30037429 AWJ20_5212 CDS RRP1 NC_031673.1 1902110 1902886 D Essential evolutionarily conserved nucleolar protein; necessary for biogenesis of 60S ribosomal subunits and for processing of pre-rRNAs to mature rRNA; associated with several distinct 66S pre-ribosomal particles; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006364 - rRNA processing [Evidence IEA,IEA]; GO_process: GO:0006364 - rRNA processing [Evidence IMP] [PMID 3549696]; Rrp1p 1902110..1902886 Sugiyamaella lignohabitans 30037430 AWJ20_5213 CDS AWJ20_5213 NC_031673.1 1903203 1904081 R uncharacterized protein complement(1903203..1904081) Sugiyamaella lignohabitans 30037431 AWJ20_5214 CDS OPT1 NC_031673.1 1906158 1908227 D Proton-coupled oligopeptide transporter of the plasma membrane; also transports glutathione and phytochelatin; member of the OPT family; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IMP,ISS] [PMID 10788431]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence IDA] [PMID 19496824]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0015198 - oligopeptide transporter activity [Evidence IMP] [PMID 10652283]; GO_function: GO:0005427 - proton-dependent oligopeptide secondary active transmembrane transporter activity [Evidence IDA] [PMID 16149917]; GO_process: GO:0006857 - oligopeptide transport [Evidence IDA] [PMID 16149917]; GO_process: GO:0015833 - peptide transport [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006790 - sulfur compound metabolic process [Evidence IEP] [PMID 11862495]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; oligopeptide transporter OPT1 1906158..1908227 Sugiyamaella lignohabitans 30037432 AWJ20_5215 CDS AWJ20_5215 NC_031673.1 1908316 1909158 R NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0004032 - alditol:NADP+ 1-oxidoreductase activity [Evidence IDA,ISS] [PMID 11306085]; GO_function: GO:0004033 - aldo-keto reductase (NADP) activity [Evidence IDA] [PMID 17140678]; GO_function: GO:0051268 - alpha-keto amide reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0051269 - alpha-keto ester reductase activity [Evidence IDA] [PMID 15564669]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0043603 - cellular amide metabolic process [Evidence IDA] [PMID 15564669]; GO_process: GO:0006725 - cellular aromatic compound metabolic process [Evidence IDA] [PMID 16268655]; GO_process: GO:0042180 - cellular ketone metabolic process [Evidence IDA] [PMID 17140678]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 17919749]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; aldo-keto reductase superfamily protein complement(1908316..1909158) Sugiyamaella lignohabitans 30037433 AWJ20_5216 CDS AYT1 NC_031673.1 1910000 1911424 D Acetyltransferase; catalyzes trichothecene 3-O-acetylation, suggesting a possible role in trichothecene biosynthesis; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_function: GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups [Evidence IEA]; GO_function: GO:0045462 - trichothecene 3-O-acetyltransferase activity [Evidence IMP] [PMID 12478589]; GO_process: GO:0043387 - mycotoxin catabolic process [Evidence IMP] [PMID 12478589]; Ayt1p 1910000..1911424 Sugiyamaella lignohabitans 30037434 AWJ20_5218 CDS ITT1 NC_031673.1 1912246 1913682 D Protein that modulates the efficiency of translation termination; interacts with translation release factors eRF1 (Sup45p) and eRF3 (Sup35p) in vitro, contains a zinc finger domain characteristic of the TRIAD class of proteins; GO_component: GO:0005575 - cellular_component [Evidence ND]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006417 - regulation of translation [Evidence IEA]; GO_process: GO:0006449 - regulation of translational termination [Evidence IMP] [PMID 11570975]; Itt1p 1912246..1913682 Sugiyamaella lignohabitans 30037436 AWJ20_5219 CDS PRP40 NC_031673.1 1915556 1918030 D U1 snRNP protein involved in splicing; interacts with the branchpoint-binding protein during the formation of the second commitment complex; GO_component: GO:0005685 - U1 snRNP [Evidence IDA] [PMID 9630245]; GO_component: GO:0071004 - U2-type prespliceosome [Evidence IDA] [PMID 16618970]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IMP] [PMID 15020406]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 8622699]; GO_process: GO:0008380 - RNA splicing [Evidence IEA]; GO_process: GO:0006397 - mRNA processing [Evidence IEA]; GO_process: GO:0000398 - mRNA splicing, via spliceosome [Evidence IDA] [PMID 8622699]; Prp40p 1915556..1918030 Sugiyamaella lignohabitans 30037437 AWJ20_5220 CDS UBP6 NC_031673.1 1919705 1921246 D Ubiquitin-specific protease; situated in the base subcomplex of the 26S proteasome, releases free ubiquitin from branched polyubiquitin chains; negatively regulates degradation of ubiquitinated proteins by the proteasome; works in opposition to Hul5p polyubiquitin elongation activity; mutant has aneuploidy tolerance; GO_component: GO:0000502 - proteasome complex [Evidence IPI] [PMID 12408819]; GO_component: GO:0005838 - proteasome regulatory particle [Evidence IPI] [PMID 11029046]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA,IMP] [PMID 12408819]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA,IMP] [PMID 17018280]; GO_process: GO:1901799 - negative regulation of proteasomal protein catabolic process [Evidence IMP] [PMID 17018280]; GO_process: GO:0016579 - protein deubiquitination [Evidence IMP] [PMID 12408819]; GO_process: GO:0016579 - protein deubiquitination [Evidence IGI] [PMID 14581483]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; Ubp6p 1919705..1921246 Sugiyamaella lignohabitans 30037439 AWJ20_5221 CDS MIC19 NC_031673.1 1921470 1921928 R Component of the MICOS complex; MICOS (formerly MINOS or MitOS) is a mitochondrial inner membrane complex that extends into the intermembrane space and has a role in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane; Mic19p is peripheral to the inner membrane; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21944719]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 21987634]; GO_component: GO:0061617 - MICOS complex [Evidence IDA] [PMID 22009199]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0044284 - mitochondrial crista junction [Evidence IDA] [PMID 22009199]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 21944719]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 21987634]; GO_process: GO:0042407 - cristae formation [Evidence IMP] [PMID 22009199]; Mic19p complement(1921470..1921928) Sugiyamaella lignohabitans 30037440 AWJ20_5222 CDS AWJ20_5222 NC_031673.1 1923377 1924099 R uncharacterized protein complement(1923377..1924099) Sugiyamaella lignohabitans 30037441 AWJ20_5223 CDS ADH3 NC_031673.1 1926166 1927194 D Mitochondrial alcohol dehydrogenase isozyme III; involved in the shuttling of mitochondrial NADH to the cytosol under anaerobic conditions and ethanol production; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 3550419]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IDA] [PMID 3550419]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 3546317]; GO_process: GO:0000947 - amino acid catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0006113 - fermentation [Evidence ISS] [PMID 3550419]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; alcohol dehydrogenase ADH3 1926166..1927194 Sugiyamaella lignohabitans 30037442 AWJ20_5224 CDS AWJ20_5224 NC_031673.1 1931245 1933992 D XP_962611|transcriptional activator xlnR [Neurospora crassa OR74A]; transcriptional activator xlnR 1931245..1933992 Sugiyamaella lignohabitans 30037443 AWJ20_5225 CDS PRC1 NC_031673.1 1934138 1935235 R Vacuolar carboxypeptidase Y (proteinase C, CPY); broad-specificity C-terminal exopeptidase involved in non-specific protein degradation in the vacuole; member of the serine carboxypeptidase family; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 11914276]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 23708375]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA,IEA]; GO_function: GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IEA]; GO_function: GO:0004185 - serine-type carboxypeptidase activity [Evidence IDA,IMP] [PMID 8679540]; GO_process: GO:0046938 - phytochelatin biosynthetic process [Evidence IDA,IMP] [PMID 17408619]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0007039 - vacuolar protein catabolic process [Evidence TAS] [PMID 8789256]; carboxypeptidase C PRC1 complement(1934138..1935235) Sugiyamaella lignohabitans 30037444 AWJ20_5226 CDS PEP12 NC_031673.1 1935904 1936704 R SNAP receptor PEP12 complement(1935904..1936704) Sugiyamaella lignohabitans 30037445 AWJ20_5227 CDS POL1 NC_031673.1 1937331 1940384 R Catalytic subunit of the DNA polymerase I alpha-primase complex; required for the initiation of DNA replication during mitotic DNA synthesis and premeiotic DNA synthesis; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 22593576]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 3888995]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005657 - replication fork [Evidence IDA] [PMID 15773893]; GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 1704371]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 3888995]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 3907855]; GO_function: GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0001882 - nucleoside binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 2651896]; GO_process: GO:0000076 - DNA replication checkpoint [Evidence IBA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IC] [PMID 3888995]; GO_process: GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IBA]; GO_process: GO:0006271 - DNA strand elongation involved in DNA replication [Evidence IBA]; GO_process: GO:0000731 - DNA synthesis involved in DNA repair [Evidence IMP] [PMID 2651896]; GO_process: GO:0006278 - RNA-dependent DNA replication [Evidence IDA] [PMID 17429354]; GO_process: GO:0006302 - double-strand break repair [Evidence IMP] [PMID 10025407]; GO_process: GO:0000734 - gene conversion at mating-type locus, DNA repair synthesis [Evidence IBA]; GO_process: GO:0006273 - lagging strand elongation [Evidence IC] [PMID 3888995]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; GO_process: GO:0006279 - premeiotic DNA replication [Evidence IMP] [PMID 2651896]; DNA-directed DNA polymerase alpha catalytic subunit POL1 complement(1937331..1940384) Sugiyamaella lignohabitans 30037446 AWJ20_5228 CDS AWJ20_5228 NC_031673.1 1941178 1941591 R uncharacterized protein complement(1941178..1941591) Sugiyamaella lignohabitans 30037447 AWJ20_5229 CDS AWJ20_5229 NC_031673.1 1941980 1942939 R uncharacterized protein complement(1941980..1942939) Sugiyamaella lignohabitans 30037448 AWJ20_5233 CDS TNA1 NC_031673.1 1945093 1946583 R High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA); GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0005887 - integral component of plasma membrane [Evidence ISS] [PMID 9678606]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0015663 - nicotinamide mononucleotide transmembrane transporter activity [Evidence IMP] [PMID 10869563]; GO_process: GO:0015890 - nicotinamide mononucleotide transport [Evidence IEP,IMP] [PMID 10869563]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Tna1p complement(1945093..1946583) Sugiyamaella lignohabitans 30037453 AWJ20_5234 CDS AWJ20_5234 NC_031673.1 1947581 1948819 D uncharacterized protein 1947581..1948819 Sugiyamaella lignohabitans 30037454 AWJ20_5235 CDS HSP78 NC_031673.1 1949070 1951544 R Oligomeric mitochondrial matrix chaperone; cooperates with Ssc1p in mitochondrial thermotolerance after heat shock; able to prevent the aggregation of misfolded proteins as well as resolubilize protein aggregates; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 8413229]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 11734006]; GO_function: GO:0051787 - misfolded protein binding [Evidence IDA] [PMID 7628444]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0034605 - cellular response to heat [Evidence IMP] [PMID 7628444]; GO_process: GO:0034605 - cellular response to heat [Evidence IGI,IMP] [PMID 8830768]; GO_process: GO:0000002 - mitochondrial genome maintenance [Evidence IGI] [PMID 7500331]; GO_process: GO:0042026 - protein refolding [Evidence IDA,IMP] [PMID 11734006]; GO_process: GO:0050821 - protein stabilization [Evidence IMP] [PMID 16460754]; GO_process: GO:0050821 - protein stabilization [Evidence IGI] [PMID 7628444]; GO_process: GO:0043335 - protein unfolding [Evidence IMP] [PMID 16460754]; GO_process: GO:0006950 - response to stress [Evidence IEA]; chaperone ATPase HSP78 complement(1949070..1951544) Sugiyamaella lignohabitans 30037455 AWJ20_5236 CDS RIM21 NC_031673.1 1951989 1954046 R pH sensor molecule, component of the RIM101 pathway; has a role in cell wall construction and alkaline pH response; is glycosylated and phosphorylated; interacts with Dfg16p and Rim9p to form a pH-sensing complex; localization to the plasma membrane is dependent on Dfg16p and Rim9p; has similarity to A. nidulans PalH; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23019326]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IMP] [PMID 10821185]; GO_process: GO:0071469 - cellular response to alkalinity [Evidence IMP] [PMID 23019326]; GO_process: GO:0009272 - fungal-type cell wall biogenesis [Evidence IGI,IMP] [PMID 16524906]; GO_process: GO:0001403 - invasive growth in response to glucose limitation [Evidence IMP] [PMID 10821185]; Rim21p complement(1951989..1954046) Sugiyamaella lignohabitans 30037456 AWJ20_5237 CDS MNN2 NC_031673.1 1954660 1956675 R Alpha-1,2-mannosyltransferase; responsible for addition of the first alpha-1,2-linked mannose to form the branches on the mannan backbone of oligosaccharides, localizes to an early Golgi compartment; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 9756928]; GO_component: GO:0000139 - Golgi membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000026 - alpha-1,2-mannosyltransferase activity [Evidence IMP] [PMID 9756928]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IEA,IEA]; GO_process: GO:0006486 - protein glycosylation [Evidence IMP] [PMID 9756928]; Mnn2p complement(1954660..1956675) Sugiyamaella lignohabitans 30037457 AWJ20_5238 CDS ECI1 NC_031673.1 1958266 1959093 D Peroxisomal delta3,delta2-enoyl-CoA isomerase; hexameric protein that converts 3-hexenoyl-CoA to trans-2-hexenoyl-CoA, essential for the beta-oxidation of unsaturated fatty acids, oleate-induced; ECI1 has a paralog, DCI1, that arose from the whole genome duplication; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 9813046]; GO_component: GO:0005777 - peroxisome [Evidence IDA] [PMID 9837886]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0004165 - dodecenoyl-CoA delta-isomerase activity [Evidence IEA]; GO_function: GO:0004165 - dodecenoyl-CoA delta-isomerase activity [Evidence IDA,IMP] [PMID 9813046]; GO_function: GO:0004165 - dodecenoyl-CoA delta-isomerase activity [Evidence IDA,IMP] [PMID 9837886]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IEA]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IDA] [PMID 9813046]; GO_process: GO:0006635 - fatty acid beta-oxidation [Evidence IDA] [PMID 9837886]; GO_process: GO:0006631 - fatty acid metabolic process [Evidence IEA]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; dodecenoyl-CoA isomerase 1958266..1959093 Sugiyamaella lignohabitans 30037458 AWJ20_5239 CDS AWJ20_5239 NC_031673.1 1959303 1960808 R uncharacterized protein complement(1959303..1960808) Sugiyamaella lignohabitans 30037459 AWJ20_5240 CDS COQ3 NC_031673.1 1961658 1962368 D O-methyltransferase; catalyzes two different O-methylation steps in ubiquinone (Coenzyme Q) biosynthesis; component of a mitochondrial ubiquinone-synthesizing complex; phosphoprotein; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 10419476]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 10419476]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 10760477]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008425 - 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity [Evidence IEA]; GO_function: GO:0061543 - 3-demethylubiquinone-6 3-O-methyltransferase activity [Evidence IMP] [PMID 10419476]; GO_function: GO:0008689 - 3-demethylubiquinone-9 3-O-methyltransferase activity [Evidence IEA]; GO_function: GO:0004395 - hexaprenyldihydroxybenzoate methyltransferase activity [Evidence IEA]; GO_function: GO:0004395 - hexaprenyldihydroxybenzoate methyltransferase activity [Evidence IMP] [PMID 1885593]; GO_function: GO:0008168 - methyltransferase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0032259 - methylation [Evidence IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IEA,IEA,IEA]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IDA] [PMID 10419476]; GO_process: GO:0006744 - ubiquinone biosynthetic process [Evidence IMP] [PMID 1885593]; hexaprenyldihydroxybenzoate methyltransferase 1961658..1962368 Sugiyamaella lignohabitans 30037461 AWJ20_5241 CDS VPS60 NC_031673.1 1962733 1963380 R Protein involved in late endosome to vacuole transport; cytoplasmic and vacuolar membrane protein; required for normal filament maturation during pseudohyphal growth; may function in targeting cargo proteins for degradation; interacts with Vta1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005768 - endosome [Evidence IEA]; GO_component: GO:0010008 - endosome membrane [Evidence IEA]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 23708375]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030447 - filamentous growth [Evidence IMP] [PMID 12940986]; GO_process: GO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway [Evidence IGI] [PMID 18032584]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps60p complement(1962733..1963380) Sugiyamaella lignohabitans 30037462 AWJ20_5242 CDS AWJ20_5242 NC_031673.1 1966207 1966980 R uncharacterized protein complement(1966207..1966980) Sugiyamaella lignohabitans 30037463 AWJ20_5243 CDS AGX1 NC_031673.1 1968320 1969477 D Alanine:glyoxylate aminotransferase (AGT); catalyzes the synthesis of glycine from glyoxylate, which is one of three pathways for glycine biosynthesis in yeast; has similarity to mammalian and plant alanine:glyoxylate aminotransferases; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0008453 - alanine-glyoxylate transaminase activity [Evidence IEA]; GO_function: GO:0008453 - alanine-glyoxylate transaminase activity [Evidence IMP] [PMID 14745783]; GO_function: GO:0008453 - alanine-glyoxylate transaminase activity [Evidence IDA] [PMID 16226833]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006545 - glycine biosynthetic process [Evidence IEA]; GO_process: GO:0019265 - glycine biosynthetic process, by transamination of glyoxylate [Evidence IDA] [PMID 16226833]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; alanine--glyoxylate transaminase 1968320..1969477 Sugiyamaella lignohabitans 30037464 AWJ20_5244 CDS AWJ20_5244 NC_031673.1 1969549 1971270 R uncharacterized protein complement(1969549..1971270) Sugiyamaella lignohabitans 30037465 AWJ20_5245 CDS AWJ20_5245 NC_031673.1 1971658 1973214 D uncharacterized protein 1971658..1973214 Sugiyamaella lignohabitans 30037466 AWJ20_5246 CDS AWJ20_5246 NC_031673.1 1973341 1974048 D uncharacterized protein 1973341..1974048 Sugiyamaella lignohabitans 30037467 AWJ20_5247 CDS PSD2 NC_031673.1 1974100 1976328 R Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes; converts phosphatidylserine to phosphatidylethanolamine; controls vacuolar membrane phospholipid content by regulating phospholipids in compartments that will eventually give rise to the vacuole; loss of Psd2p causes a specific reduction in vacuolar membrane PE levels while total PE levels are not significantly affected; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005795 - Golgi stack [Evidence IEA]; GO_component: GO:0005768 - endosome [Evidence IDA] [PMID 20016005]; GO_component: GO:0005773 - vacuole [Evidence IEA,IEA]; GO_function: GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO_function: GO:0016829 - lyase activity [Evidence IEA]; GO_function: GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IEA,IEA]; GO_function: GO:0004609 - phosphatidylserine decarboxylase activity [Evidence IGI] [PMID 14660568]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0006656 - phosphatidylcholine biosynthetic process [Evidence IDA] [PMID 6427211]; GO_process: GO:0006646 - phosphatidylethanolamine biosynthetic process [Evidence IEA]; GO_process: GO:0008654 - phospholipid biosynthetic process [Evidence IEA,IEA]; phosphatidylserine decarboxylase 2 complement(1974100..1976328) Sugiyamaella lignohabitans 30037468 AWJ20_5248 CDS BCS1 NC_031673.1 1978947 1980374 R Protein translocase and chaperone required for Complex III assembly; member of the AAA ATPase family; forms a homo-oligomeric complex in the mitochondrial inner membrane that translocates the C-terminal domain of Rip1p from the matrix across the inner membrane, and then delivers it to an assembly intermediate of respiratory Complex III in an ATP-dependent reaction; also required for assembly of the Qcr10p subunit; mutations in human homolog BCS1L linked to neonatal diseases; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IEA,IEA]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 8599931]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 1327750]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008320 - protein transmembrane transporter activity [Evidence IMP] [PMID 22017868]; GO_process: GO:0051131 - chaperone-mediated protein complex assembly [Evidence IMP,IPI] [PMID 10508156]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0034551 - mitochondrial respiratory chain complex III assembly [Evidence IMP] [PMID 22017868]; GO_process: GO:0032979 - protein insertion into mitochondrial membrane from inner side [Evidence IMP,IPI] [PMID 22017868]; bifunctional AAA family ATPase chaperone/translocase BCS1 complement(1978947..1980374) Sugiyamaella lignohabitans 30037469 AWJ20_5249 CDS UBP2 NC_031673.1 1981210 1984851 D Ubiquitin-specific protease; removes ubiquitin from ubiquitinated proteins; deubiquitinates Rsp5p and is required for MVB sorting of membrane proteins; can cleave polyubiquitin and has isopeptidase activity; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 1429680]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 1429680]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA,IMP] [PMID 24069405]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA] [PMID 15933713]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA,IMP] [PMID 24069405]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IGI,IMP,IPI] [PMID 19165343]; Ubp2p 1981210..1984851 Sugiyamaella lignohabitans 30037470 AWJ20_5250 CDS UBP2 NC_031673.1 1985006 1985377 D Ubiquitin-specific protease; removes ubiquitin from ubiquitinated proteins; deubiquitinates Rsp5p and is required for MVB sorting of membrane proteins; can cleave polyubiquitin and has isopeptidase activity; GO_component: GO:0005737 - cytoplasm [Evidence IC] [PMID 1429680]; GO_function: GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA] [PMID 1429680]; GO_function: GO:0004843 - ubiquitin-specific protease activity [Evidence IDA,IMP] [PMID 24069405]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA] [PMID 15933713]; GO_process: GO:0016579 - protein deubiquitination [Evidence IDA,IMP] [PMID 24069405]; GO_process: GO:0006508 - proteolysis [Evidence IEA]; GO_process: GO:0006511 - ubiquitin-dependent protein catabolic process [Evidence IEA]; GO_process: GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [Evidence IGI,IMP,IPI] [PMID 19165343]; Ubp2p 1985006..1985377 Sugiyamaella lignohabitans 30037472 AWJ20_5251 CDS VPS74 NC_031673.1 1985584 1986657 R Golgi phosphatidylinositol-4-kinase effector and PtdIns4P sensor; interacts with the cytosolic domains of cis and medial glycosyltransferases, and in the PtdIns4P-bound state mediates the targeting of these enzymes to the Golgi; interacts with the catalytic domain of Sac1p, the major cellular PtdIns4P phosphatase, to direct dephosphosphorylation of the Golgi pool of PtdIns4P; tetramerization required for function; ortholog of human GOLPH3/GPP34/GMx33; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA]; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 18410729]; GO_component: GO:0032580 - Golgi cisterna membrane [Evidence IEA]; GO_component: GO:0005797 - Golgi medial cisterna [Evidence IDA] [PMID 22553352]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18410729]; GO_component: GO:0019898 - extrinsic component of membrane [Evidence IDA] [PMID 18635803]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0019899 - enzyme binding [Evidence IPI] [PMID 18410729]; GO_function: GO:0008289 - lipid binding [Evidence IEA]; GO_function: GO:0070273 - phosphatidylinositol-4-phosphate binding [Evidence IDA,IMP] [PMID 20026658]; GO_process: GO:0030968 - endoplasmic reticulum unfolded protein response [Evidence IMP] [PMID 16582425]; GO_process: GO:0034067 - protein localization to Golgi apparatus [Evidence IMP] [PMID 18410729]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0060304 - regulation of phosphatidylinositol dephosphorylation [Evidence IMP] [PMID 22553352]; GO_process: GO:0006890 - retrograde vesicle-mediated transport, Golgi to ER [Evidence IMP] [PMID 18635803]; GO_process: GO:0006810 - transport [Evidence IEA]; Vps74p complement(1985584..1986657) Sugiyamaella lignohabitans 30037473 AWJ20_5252 CDS AWJ20_5252 NC_031673.1 1987824 1989152 R uncharacterized protein complement(1987824..1989152) Sugiyamaella lignohabitans 30037474 AWJ20_5253 CDS CHL1 NC_031673.1 1989927 1992401 D Probable DNA helicase; involved in sister-chromatid cohesion and genome integrity and interstrand cross-link repair; interacts with ECO1 and CTF18; mutants are defective in silencing, rDNA recombination, aging and the heat shock response; FANCJ-like helicase family member; mutations in the human homolog, DDX11/ChLR1, cause Warsaw breakage syndrome; GO_component: GO:0000790 - nuclear chromatin [Evidence IMP] [PMID 24086532]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10931920]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15020404]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO_function: GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO_function: GO:0003677 - DNA binding [Evidence IEA,IEA]; GO_function: GO:0003678 - DNA helicase activity [Evidence IMP,ISS] [PMID 10931920]; GO_function: GO:0004386 - helicase activity [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]; GO_function: GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0034085 - establishment of sister chromatid cohesion [Evidence IMP] [PMID 23334284]; GO_process: GO:0036297 - interstrand cross-link repair [Evidence IGI] [PMID 22912599]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP] [PMID 14742714]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI,IMP,IPI] [PMID 15020404]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IGI] [PMID 17483413]; GO_process: GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]; Chl1p 1989927..1992401 Sugiyamaella lignohabitans 30037475 AWJ20_5254 CDS NIC96 NC_031673.1 1992594 1995707 D linker nucleoporin NIC96 join(1992594..1992856,1992980..1995707) Sugiyamaella lignohabitans 30037476 AWJ20_5255 CDS ADH2 NC_031673.1 1996374 1997465 D Glucose-repressible alcohol dehydrogenase II; catalyzes the conversion of ethanol to acetaldehyde; involved in the production of certain carboxylate esters; regulated by ADR1; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IEA]; GO_function: GO:0004022 - alcohol dehydrogenase (NAD) activity [Evidence IDA] [PMID 3546317]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006116 - NADH oxidation [Evidence IDA] [PMID 3546317]; GO_process: GO:0000947 - amino acid catabolic process to alcohol via Ehrlich pathway [Evidence IGI] [PMID 12499363]; GO_process: GO:0006067 - ethanol metabolic process [Evidence IDA] [PMID 3546317]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; alcohol dehydrogenase ADH2 1996374..1997465 Sugiyamaella lignohabitans 30037477 AWJ20_5256 CDS ADD66 NC_031673.1 1999213 1999980 R Protein involved in 20S proteasome assembly; forms a heterodimer with Pba1p that binds to proteasome precursors; interaction with Pba1p-Add66p may affect function of the mature proteasome and its role in maintaining respiratory metabolism; similar to human PAC2 constituent of the PAC1-PAC2 complex involved in proteasome assembly; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 17634286]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0043248 - proteasome assembly [Evidence IGI,ISS] [PMID 17431397]; GO_process: GO:0043248 - proteasome assembly [Evidence IMP] [PMID 17634286]; Add66p complement(1999213..1999980) Sugiyamaella lignohabitans 30037478 AWJ20_5257 CDS AWJ20_5257 NC_031673.1 2001917 2008141 D uncharacterized protein 2001917..2008141 Sugiyamaella lignohabitans 30037479 AWJ20_5258 CDS AWJ20_5258 NC_031673.1 2006239 2007839 R Uncharacterized protein C2orf16 complement(join(2006239..2007728,2007806..2007839)) Sugiyamaella lignohabitans 30037480 AWJ20_5259 CDS NPA3 NC_031673.1 2008591 2009703 D Member of the conserved GPN-loop GTPase family; has a role in transport of RNA polymerase II to the nucleus; exhibits GTP-dependent binding to PolII; has ATPase activity; involved in sister chromatid cohesion; phosphorylated by the Pcl1p-Pho85p kinase complex; human homolog XAB1 interacts with human RNA polymerase II; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0016887 - ATPase activity [Evidence IDA] [PMID 15082539]; GO_function: GO:0005525 - GTP binding [Evidence IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IMP] [PMID 21844196]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_process: GO:0044376 - RNA polymerase II complex localization to nucleus [Evidence IMP] [PMID 21844196]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0007064 - mitotic sister chromatid cohesion [Evidence IMP] [PMID 21532343]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IDA] [PMID 21844196]; GTPase NPA3 2008591..2009703 Sugiyamaella lignohabitans 30037481 AWJ20_5260 CDS AWJ20_5260 NC_031673.1 2009969 2012332 R conserved protein (fungal and bacterial) complement(2009969..2012332) Sugiyamaella lignohabitans 30037483 AWJ20_5261 CDS CAC2 NC_031673.1 2013096 2017221 R Subunit of chromatin assembly factor I (CAF-1), with Rlf2p and Msi1p; chromatin assembly by CAF-1 is important for multiple processes including silencing at telomeres, mating type loci, and rDNA; maintenance of kinetochore structure, deactivation of the DNA damage checkpoint after DNA repair, and chromatin dynamics during transcription; relocalizes to the cytosol in response to hypoxia; GO_component: GO:0033186 - CAF-1 complex [Evidence IDA] [PMID 9030687]; GO_component: GO:0000775 - chromosome, centromeric region [Evidence IDA] [PMID 11782447]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22932476]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22932476]; GO_function: GO:0042393 - histone binding [Evidence IDA] [PMID 16503640]; GO_process: GO:0006335 - DNA replication-dependent nucleosome assembly [Evidence IDA,IMP] [PMID 9030687]; Cac2p complement(join(2013096..2014384,2015004..2017221)) Sugiyamaella lignohabitans 30037484 AWJ20_5262 CDS AWJ20_5262 NC_031673.1 2018762 2019919 D uncharacterized protein 2018762..2019919 Sugiyamaella lignohabitans 30037485 AWJ20_5263 CDS PTA1 NC_031673.1 2020706 2022898 D RNA-processing protein PTA1 2020706..2022898 Sugiyamaella lignohabitans 30037486 AWJ20_5264 CDS AWJ20_5264 NC_031673.1 2023086 2025368 R Vacuolar fusion protein CCZ1 complement(2023086..2025368) Sugiyamaella lignohabitans 30037487 AWJ20_5265 CDS AWJ20_5265 NC_031673.1 2026346 2028184 D uncharacterized protein 2026346..2028184 Sugiyamaella lignohabitans 30037488 AWJ20_5266 CDS AIP1 NC_031673.1 2028373 2029860 R putative WD repeat-containing protein alr3466 complement(2028373..2029860) Sugiyamaella lignohabitans 30037489 AWJ20_5267 CDS YAE1 NC_031673.1 2031684 2032169 R Protein that forms a complex with Lto1p and Rli1p; essential for growth under standard (aerobic) conditions but not under anaerobic conditions; may have a role in protection of ribosomal assembly and function from damage due to reactive oxygen species; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IGI,IPI] [PMID 23318452]; GO_process: GO:0006413 - translational initiation [Evidence IGI,IPI] [PMID 23318452]; Yae1p complement(2031684..2032169) Sugiyamaella lignohabitans 30037490 AWJ20_5268 CDS CUE1 NC_031673.1 2036462 2037115 R Ubiquitin-binding protein; endoplasmic reticulum membrane protein that recruits the ubiquitin-conjugating enzyme Ubc7p to the ER where it functions in protein degradation; contains a CUE domain that binds ubiquitin to facilitate intramolecular monoubiquitination; CUE1 has a paralog, CUE4, that arose from the whole genome duplication; GO_component: GO:0000837 - Doa10p ubiquitin ligase complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0000839 - Hrd1p ubiquitin ligase ERAD-L complex [Evidence IDA] [PMID 16873066]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO_component: GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO_component: GO:0030176 - integral component of endoplasmic reticulum membrane [Evidence IDA] [PMID 9388185]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0043130 - ubiquitin binding [Evidence IDA] [PMID 23665229]; GO_function: GO:0097027 - ubiquitin-protein transferase activator activity [Evidence IDA] [PMID 18321851]; GO_process: GO:0030433 - ER-associated ubiquitin-dependent protein catabolic process [Evidence IMP] [PMID 9388185]; GO_process: GO:0097051 - establishment of protein localization to endoplasmic reticulum membrane [Evidence IMP] [PMID 9388185]; Cue1p complement(2036462..2037115) Sugiyamaella lignohabitans 30037491 AWJ20_5269 CDS CBK1 NC_031673.1 2039190 2041430 R serine/threonine protein kinase CBK1 complement(2039190..2041430) Sugiyamaella lignohabitans 30037492 AWJ20_5270 CDS AWJ20_5270 NC_031673.1 2042864 2043757 R uncharacterized protein complement(2042864..2043757) Sugiyamaella lignohabitans 30037494 AWJ20_5271 CDS CDC8 NC_031673.1 2044647 2045303 R Thymidylate and uridylate kinase; functions in de novo biosynthesis of pyrimidine deoxyribonucleotides; converts dTMP to dTDP and dUMP to dUTP; essential for mitotic and meiotic DNA replication; homologous to S. pombe Tmp1p; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 6094555]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 6094555]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016301 - kinase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0004798 - thymidylate kinase activity [Evidence IEA,IEA]; GO_function: GO:0004798 - thymidylate kinase activity [Evidence IDA] [PMID 6088527]; GO_function: GO:0004798 - thymidylate kinase activity [Evidence IDA] [PMID 6094555]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_function: GO:0009041 - uridylate kinase activity [Evidence IDA] [PMID 6094555]; GO_process: GO:0006233 - dTDP biosynthetic process [Evidence IEA]; GO_process: GO:0006233 - dTDP biosynthetic process [Evidence IDA] [PMID 6094555]; GO_process: GO:0006235 - dTTP biosynthetic process [Evidence IEA]; GO_process: GO:0006235 - dTTP biosynthetic process [Evidence IDA] [PMID 6094555]; GO_process: GO:0006227 - dUDP biosynthetic process [Evidence IDA] [PMID 6094555]; GO_process: GO:0009165 - nucleotide biosynthetic process [Evidence IEA]; GO_process: GO:0046939 - nucleotide phosphorylation [Evidence IEA,IEA]; GO_process: GO:0016310 - phosphorylation [Evidence IEA]; bifunctional thymidylate/uridylate kinase complement(2044647..2045303) Sugiyamaella lignohabitans 30037495 AWJ20_5272 CDS AWJ20_5272 NC_031673.1 2046153 2048057 R uncharacterized protein complement(2046153..2048057) Sugiyamaella lignohabitans 30037496 AWJ20_5273 CDS AWJ20_5273 NC_031673.1 2050535 2051956 R Uncharacterized protein YNL193W complement(2050535..2051956) Sugiyamaella lignohabitans 30037497 AWJ20_5274 CDS YJU3 NC_031673.1 2052804 2054495 R Monoglyceride lipase (MGL); functional ortholog of mammalian MGL, localizes to lipid particles and membranes, also member of the eukaryotic serine hydrolase family; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IEA,IEA]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 10515935]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 20554061]; GO_component: GO:0005811 - lipid particle [Evidence IDA] [PMID 24868093]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 20554061]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IEA,IEA]; GO_component: GO:0005741 - mitochondrial outer membrane [Evidence IDA] [PMID 16407407]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0047372 - acylglycerol lipase activity [Evidence IEA]; GO_function: GO:0047372 - acylglycerol lipase activity [Evidence IMP] [PMID 20554061]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017171 - serine hydrolase activity [Evidence IDA,ISM] [PMID 14645503]; GO_process: GO:0019433 - triglyceride catabolic process [Evidence IEA]; GO_process: GO:0006641 - triglyceride metabolic process [Evidence IMP] [PMID 20554061]; Yju3p complement(2052804..2054495) Sugiyamaella lignohabitans 30037498 AWJ20_5275 CDS MEC1 NC_031673.1 2056992 2062388 D protein kinase MEC1 2056992..2062388 Sugiyamaella lignohabitans 30037499 AWJ20_5276 CDS MEC1 NC_031673.1 2062497 2062925 D protein kinase MEC1 2062497..2062925 Sugiyamaella lignohabitans 30037500 AWJ20_5277 CDS CLU1 NC_031673.1 2064227 2069743 R Subunit of the eukaryotic translation initiation factor 3 (eIF3); component of unknown function; deletion causes defects in mitochondrial organization but not in growth or translation initiation; can rescue cytokinesis and mitochondrial organization defects of the Dictyostelium cluA- mutant; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005852 - eukaryotic translation initiation factor 3 complex [Evidence IPI] [PMID 10358023]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0048312 - intracellular distribution of mitochondria [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence IEA]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 9601101]; GO_process: GO:0006413 - translational initiation [Evidence IPI] [PMID 10358023]; Clu1p complement(join(2064227..2068029,2069725..2069743)) Sugiyamaella lignohabitans 30037501 AWJ20_5278 CDS MRPL24 NC_031673.1 2070974 2071840 R Mitochondrial ribosomal protein of the large subunit; two mitochondrial ribosomal proteins, YmL14 and YmL24, have been assigned to the same gene; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005762 - mitochondrial large ribosomal subunit [Evidence IDA] [PMID 9151978]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA,IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 9151978]; GO_process: GO:0032543 - mitochondrial translation [Evidence IC] [PMID 9151978]; GO_process: GO:0006412 - translation [Evidence IEA]; mitochondrial 54S ribosomal protein YmL24/YmL14 complement(2070974..2071840) Sugiyamaella lignohabitans 30037502 AWJ20_5279 CDS GYP5 NC_031673.1 2072539 2074779 R GTPase-activating protein (GAP) for yeast Rab family members; involved in ER to Golgi trafficking; exhibits GAP activity toward Ypt1p that is stimulated by Gyl1p, also acts on Sec4p; interacts with Gyl1p, Rvs161p and Rvs167p; involved in recruiting Rvs167p to the bud tip during polarized growth; relocalizes from bud neck to cytoplasm upon DNA replication stress; GYP5 has a paralog, GYL1, that arose from the whole genome duplication; GO_component: GO:0005798 - Golgi-associated vesicle [Evidence IDA] [PMID 15331637]; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 15331637]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 15331637]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 12189143]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 15331637]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 15331637]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IGI,IPI,ISS] [PMID 12189143]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IGI,IPI] [PMID 15802519]; GO_process: GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IGI,IPI] [PMID 15802519]; GO_process: GO:0006887 - exocytosis [Evidence IEA]; GO_process: GO:0043547 - positive regulation of GTPase activity [Evidence IEA]; GO_process: GO:0032851 - positive regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI] [PMID 12189143]; Gyp5p complement(2072539..2074779) Sugiyamaella lignohabitans 30037503 AWJ20_5280 CDS CPR6 NC_031673.1 2075490 2076617 R Peptidyl-prolyl cis-trans isomerase (cyclophilin); catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; plays a role in determining prion variants; binds to Hsp82p and contributes to chaperone activity; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 9191025]; GO_function: GO:0016853 - isomerase activity [Evidence IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 10942767]; GO_function: GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IDA] [PMID 9191025]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 10942767]; GO_process: GO:0006457 - protein folding [Evidence IEA,IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA,IPI] [PMID 9927435]; GO_process: GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA,IEA,IEA]; GO_process: GO:0042026 - protein refolding [Evidence IDA] [PMID 10942767]; peptidylprolyl isomerase CPR6 complement(2075490..2076617) Sugiyamaella lignohabitans 30037505 AWJ20_5281 CDS AWJ20_5281 NC_031673.1 2077731 2079584 D uncharacterized protein 2077731..2079584 Sugiyamaella lignohabitans 30037506 AWJ20_5282 CDS AWJ20_5282 NC_031673.1 2080848 2082830 D uncharacterized protein 2080848..2082830 Sugiyamaella lignohabitans 30037507 AWJ20_5283 CDS AWJ20_5283 NC_031673.1 2083100 2084152 R Putative short-chain dehydrogenase/reductase; YDL114W is not an essential gene; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0008152 - metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; short-chain dehydrogenase/reductase complement(2083100..2084152) Sugiyamaella lignohabitans 30037508 AWJ20_5284 CDS IWR1 NC_031673.1 2085318 2086381 D RNA polymerase II transport factor, conserved from yeast to humans; also has a role in transporting RNA polymerase III into the nucleus; interacts with most of the RNAP II subunits; nucleo-cytoplasmic shuttling protein; deletion causes hypersensitivity to K1 killer toxin; protein increases in abundance and relocalizes from nucleus to cytoplasm upon DNA replication stress; GO_component: GO:0016591 - DNA-directed RNA polymerase II, holoenzyme [Evidence IPI] [PMID 16554755]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 19679657]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 21504834]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19679657]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 21504834]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 22842922]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 21504834]; GO_process: GO:0044376 - RNA polymerase II complex localization to nucleus [Evidence IMP] [PMID 21504834]; GO_process: GO:0044376 - RNA polymerase II complex localization to nucleus [Evidence IMP] [PMID 23267056]; GO_process: GO:1990022 - RNA polymerase III complex localization to nucleus [Evidence IMP] [PMID 23267056]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IMP] [PMID 21504834]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Iwr1p join(2085318..2085778,2085847..2086381) Sugiyamaella lignohabitans 30037509 AWJ20_5285 CDS RVS167 NC_031673.1 2087497 2089008 R Actin-associated protein with roles in endocytosis and exocytosis; interacts with Rvs161p to regulate actin cytoskeleton, endocytosis, and viability following starvation or osmotic stress; recruited to bud tips by Gyl1p and Gyp5p during polarized growth; homolog of mammalian amphiphysin; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 10393809]; GO_component: GO:0030479 - actin cortical patch [Evidence IDA] [PMID 16239147]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 24390141]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA,IEA]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 10393809]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 19053807]; GO_function: GO:0003779 - actin binding [Evidence IEA]; GO_function: GO:0008092 - cytoskeletal protein binding [Evidence IPI,ISS] [PMID 10388809]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 20610658]; GO_process: GO:0051666 - actin cortical patch localization [Evidence IMP] [PMID 8590801]; GO_process: GO:0006897 - endocytosis [Evidence IMP] [PMID 8590801]; GO_process: GO:0060988 - lipid tube assembly [Evidence IDA] [PMID 20610658]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IGI,IPI] [PMID 15802519]; amphiphysin complement(2087497..2089008) Sugiyamaella lignohabitans 30037510 AWJ20_5286 CDS AWJ20_5286 NC_031673.1 2089785 2090960 D uncharacterized protein 2089785..2090960 Sugiyamaella lignohabitans 30037511 AWJ20_5287 CDS AWJ20_5287 NC_031673.1 2094967 2096952 R uncharacterized protein complement(2094967..2096952) Sugiyamaella lignohabitans 30037512 AWJ20_5288 CDS FMP45 NC_031673.1 2110442 2110795 D Integral membrane protein localized to mitochondria; required for sporulation and maintaining sphingolipid content; similar to SUR7; FMP45 has a paralog, YNL194C, that arose from the whole genome duplication; GO_component: GO:0005938 - cell cortex [Evidence IDA] [PMID 11784867]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016021 - integral component of membrane [Evidence ISS] [PMID 9219339]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 16622836]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0030437 - ascospore formation [Evidence IGI,IMP] [PMID 11784867]; GO_process: GO:0031505 - fungal-type cell wall organization [Evidence IMP] [PMID 11784867]; GO_process: GO:0006950 - response to stress [Evidence IEA]; GO_process: GO:0030435 - sporulation resulting in formation of a cellular spore [Evidence IEA]; Fmp45p 2110442..2110795 Sugiyamaella lignohabitans 30037513 AWJ20_5289 CDS WHI3 NC_031673.1 2114063 2117005 R mRNA-binding protein WHI3 complement(2114063..2117005) Sugiyamaella lignohabitans 30037514 AWJ20_5290 CDS ECM22 NC_031673.1 2121696 2122844 D Sterol regulatory element binding protein; regulates transcription of sterol biosynthetic genes; contains Zn[2]-Cys[6] binuclear cluster; relocates from intracellular membranes to perinuclear foci on sterol depletion; ECM22 has a paralog, UPC2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IDA] [PMID 18675371]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IC] [PMID 11533229]; GO_component: GO:0048471 - perinuclear region of cytoplasm [Evidence IDA] [PMID 18675371]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0000978 - RNA polymerase II core promoter proximal region sequence-specific DNA binding [Evidence IDA] [PMID 11533229]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IDA] [PMID 11533229]; GO_function: GO:0001077 - RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription [Evidence IMP] [PMID 16055745]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19158363]; GO_function: GO:0000981 - sequence-specific DNA binding RNA polymerase II transcription factor activity [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0035961 - positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 11533229]; GO_process: GO:0035961 - positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter [Evidence IMP] [PMID 16055745]; GO_process: GO:0035969 - positive regulation of sterol import by positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [PMID 11208779]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IEA]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Ecm22p 2121696..2122844 Sugiyamaella lignohabitans 30037516 AWJ20_5291 CDS SLA1 NC_031673.1 2123097 2125202 R cytoskeletal protein-binding protein SLA1 complement(2123097..2125202) Sugiyamaella lignohabitans 30037517 AWJ20_5293 CDS CCL1 NC_031673.1 2127766 2128878 D Cyclin associated with protein kinase Kin28p; Kin28p is the TFIIH-associated carboxy-terminal domain (CTD) kinase involved in transcription initiation at RNA polymerase II promoters; GO_component: GO:0070985 - TFIIK complex [Evidence IEA]; GO_component: GO:0070985 - TFIIK complex [Evidence IDA] [PMID 11839796]; GO_component: GO:0070985 - TFIIK complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005675 - holo TFIIH complex [Evidence IDA] [PMID 19818408]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0000990 - core RNA polymerase binding transcription factor activity [Evidence IC] [PMID 19818408]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IEA]; GO_function: GO:0016538 - cyclin-dependent protein serine/threonine kinase regulator activity [Evidence IGI,IPI] [PMID 8230216]; GO_function: GO:0019901 - protein kinase binding [Evidence IEA]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 11839796]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19450536]; GO_process: GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain [Evidence IDA] [PMID 19679665]; GO_process: GO:0000079 - regulation of cyclin-dependent protein serine/threonine kinase activity [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0006366 - transcription from RNA polymerase II promoter [Evidence IDA] [PMID 19818408]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA,IEA]; TFIIH complex kinase subunit CCL1 2127766..2128878 Sugiyamaella lignohabitans 30037518 AWJ20_5294 CDS AWJ20_5294 NC_031673.1 2129084 2130253 R uncharacterized protein complement(2129084..2130253) Sugiyamaella lignohabitans 30037519 AWJ20_5295 CDS MRP8 NC_031673.1 2131064 2131852 D hypothetical protein; undergoes sumoylation; transcription induced under cell wall stress; protein levels are reduced under anaerobic conditions; protein abundance increases in response to DNA replication stress; originally thought to be a mitochondrial ribosomal protein based on sequence analysis; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0008150 - biological_process [Evidence ND]; Mrp8p 2131064..2131852 Sugiyamaella lignohabitans 30037520 AWJ20_5296 CDS NOP9 NC_031673.1 2132056 2134425 R Essential subunit of U3-containing 90S preribosome; involved in production of 18S rRNA and assembly of small ribosomal subunit; also part of pre-40S ribosome and required for its export into cytoplasm; binds RNA and contains pumilio domain; GO_component: GO:0030686 - 90S preribosome [Evidence IDA] [PMID 17956976]; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 14690591]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 17956976]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14690591]; GO_component: GO:0030688 - preribosome, small subunit precursor [Evidence IDA] [PMID 17956976]; GO_function: GO:0003723 - RNA binding [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 17956976]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_process: GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17956976]; GO_process: GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17956976]; GO_process: GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 17956976]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0000056 - ribosomal small subunit export from nucleus [Evidence IMP] [PMID 17956976]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nop9p complement(2132056..2134425) Sugiyamaella lignohabitans 30037521 AWJ20_5300 CDS BIR1 NC_031673.1 2137595 2139754 D Subunit of chromosomal passenger complex (CPC); CPC is comprised of Ipl1p-Sli15p-Bir1p-Nbl1p and regulates chromosome segregation; required for chromosome bi-orientation and for spindle assembly checkpoint activation upon reduced sister kinetochore tension; relative distribution to shortened microtubules increases upon DNA replication stress; sumoylated in an Mms21p-dependent manner; human survivin homolog; GO_component: GO:0032133 - chromosome passenger complex [Evidence IDA] [PMID 19158380]; GO_component: GO:0000778 - condensed nuclear chromosome kinetochore [Evidence IGI,IPI] [PMID 10557299]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 16608876]; GO_component: GO:0005874 - microtubule [Evidence IDA] [PMID 22842922]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 16608876]; GO_component: GO:0005819 - spindle [Evidence IDA] [PMID 16381814]; GO_component: GO:0051233 - spindle midzone [Evidence IDA] [PMID 16381814]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0006915 - apoptotic process [Evidence IMP] [PMID 16608876]; GO_process: GO:0007049 - cell cycle [Evidence IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0007059 - chromosome segregation [Evidence IMP] [PMID 10557299]; GO_process: GO:0000022 - mitotic spindle elongation [Evidence IMP] [PMID 16381814]; GO_process: GO:0031134 - sister chromatid biorientation [Evidence IMP] [PMID 19528231]; GO_process: GO:0071173 - spindle assembly checkpoint [Evidence IMP] [PMID 22908045]; Bir1p 2137595..2139754 Sugiyamaella lignohabitans 30037527 AWJ20_5301 CDS PUF2 NC_031673.1 2138734 2144115 R PUF family mRNA-binding protein; Pumilio homology domain confers RNA binding activity; preferentially binds mRNAs encoding membrane-associated proteins; binding site composed of two UAAU tetranucleotides, separated by a 3-nt linker; PUF2 has a paralog, JSN1, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003729 - mRNA binding [Evidence ISS] [PMID 11101532]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 15024427]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 21685478]; GO_function: GO:0003729 - mRNA binding [Evidence IDA] [PMID 23222640]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_process: GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [Evidence IGI] [PMID 11101532]; Puf2p complement(join(2138734..2139427,2140047..2143847,2144060..2144115)) Sugiyamaella lignohabitans 30037528 AWJ20_5302 CDS MEF1 NC_031673.1 2152910 2155207 D Mitochondrial elongation factor involved in translational elongation; GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA,IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_component: GO:0005739 - mitochondrion [Evidence IMP] [PMID 1935960]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0003924 - GTPase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence IEA,IEA]; GO_function: GO:0003746 - translation elongation factor activity [Evidence ISA] [PMID 1935960]; GO_process: GO:0006184 - GTP catabolic process [Evidence IEA]; GO_process: GO:0032543 - mitochondrial translation [Evidence IMP] [PMID 1935960]; GO_process: GO:0070125 - mitochondrial translational elongation [Evidence ISA] [PMID 1935960]; GO_process: GO:0006412 - translation [Evidence IEA]; GO_process: GO:0006414 - translational elongation [Evidence IEA,IEA,IEA]; Mef1p 2152910..2155207 Sugiyamaella lignohabitans 30037529 AWJ20_5303 CDS APL3 NC_031673.1 2155740 2158601 D Alpha-adaptin; large subunit of the clathrin associated protein complex (AP-2); involved in vesicle mediated transport; GO_component: GO:0030122 - AP-2 adaptor complex [Evidence IMP] [PMID 10564262]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 19458192]; GO_component: GO:0030131 - clathrin adaptor complex [Evidence IEA]; GO_component: GO:0005905 - coated pit [Evidence IEA,IEA]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0030117 - membrane coat [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008565 - protein transporter activity [Evidence IEA]; GO_process: GO:0006897 - endocytosis [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IC] [PMID 10564262]; GO_process: GO:0015031 - protein transport [Evidence IEA,IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; GO_process: GO:0016192 - vesicle-mediated transport [Evidence IEA]; Apl3p 2155740..2158601 Sugiyamaella lignohabitans 30037530 AWJ20_5304 CDS AWJ20_5304 NC_031673.1 2158827 2159654 R uncharacterized protein complement(2158827..2159654) Sugiyamaella lignohabitans 30037531 AWJ20_5305 CDS IST2 NC_031673.1 2160300 2162498 D Cortical ER protein involved in ER-plasma membrane tethering; one of 6 proteins (Ist2p, Scs2p, Scs22p, Tcb1p, Tcb2p, Tcb3p) that connect ER to the plasma membrane (PM) and regulate PM phosphatidylinositol-4-phosphate (PI4P) levels by controlling access of Sac1p phosphatase to its substrate PI4P in the PM; localizes to the mother cell in small-budded cells and to the bud in medium- and large-budded cells; mRNA is transported to the bud tip by an actomyosin-driven process; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 11030653]; GO_component: GO:0033101 - cellular bud membrane [Evidence IDA] [PMID 13679573]; GO_component: GO:0032541 - cortical endoplasmic reticulum [Evidence IDA] [PMID 23237950]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 11030653]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 17234190]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 23237950]; GO_function: GO:0008289 - lipid binding [Evidence IDA] [PMID 19453974]; GO_process: GO:0090158 - endoplasmic reticulum membrane organization [Evidence IGI] [PMID 23237950]; GO_process: GO:0072659 - protein localization to plasma membrane [Evidence IMP] [PMID 24416406]; GO_process: GO:0060304 - regulation of phosphatidylinositol dephosphorylation [Evidence IGI] [PMID 23237950]; Ist2p 2160300..2162498 Sugiyamaella lignohabitans 30037532 AWJ20_5306 CDS POL12 NC_031673.1 2162666 2164612 R B subunit of DNA polymerase alpha-primase complex; required for initiation of DNA replication during mitotic and premeiotic DNA synthesis; also functions in telomere capping and length regulation; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 22593576]; GO_component: GO:0005658 - alpha DNA polymerase:primase complex [Evidence IDA] [PMID 3888995]; GO_component: GO:0005635 - nuclear envelope [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 15282802]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 8289832]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 1704371]; GO_function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IDA] [PMID 3888995]; GO_process: GO:0006260 - DNA replication [Evidence IEA,IEA]; GO_process: GO:0006270 - DNA replication initiation [Evidence IMP] [PMID 8289832]; GO_process: GO:0006273 - lagging strand elongation [Evidence IC] [PMID 3888995]; GO_process: GO:0016233 - telomere capping [Evidence IGI,IMP,IPI] [PMID 15132993]; DNA-directed DNA polymerase alpha subunit POL12 complement(2162666..2164612) Sugiyamaella lignohabitans 30037533 AWJ20_5307 CDS NTA1 NC_031673.1 2164970 2165992 R Amidase; removes the amide group from N-terminal asparagine and glutamine residues to generate proteins with N-terminal aspartate and glutamate residues that are targets of ubiquitin-mediated degradation; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14562095]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO_function: GO:0008418 - protein-N-terminal asparagine amidohydrolase activity [Evidence IDA] [PMID 23218487]; GO_function: GO:0008418 - protein-N-terminal asparagine amidohydrolase activity [Evidence IDA,IMP] [PMID 7744855]; GO_function: GO:0070773 - protein-N-terminal glutamine amidohydrolase activity [Evidence IDA] [PMID 23218487]; GO_function: GO:0070773 - protein-N-terminal glutamine amidohydrolase activity [Evidence IMP] [PMID 7744855]; GO_process: GO:0006464 - cellular protein modification process [Evidence IMP] [PMID 7744855]; GO_process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]; GO_process: GO:0030163 - protein catabolic process [Evidence IMP] [PMID 7744855]; Nta1p complement(2164970..2165992) Sugiyamaella lignohabitans 30037534 AWJ20_5308 CDS LHP1 NC_031673.1 2166339 2167325 R RNA binding protein required for maturation of tRNA and U6 snRNA; acts as a molecular chaperone for RNAs transcribed by polymerase III; homologous to human La (SS-B) autoantigen; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 11720288]; GO_component: GO:0005654 - nucleoplasm [Evidence IDA] [PMID 11720288]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10564276]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_function: GO:0003723 - RNA binding [Evidence IEA,IEA]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 7799435]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0000049 - tRNA binding [Evidence IDA] [PMID 19749380]; GO_process: GO:0006396 - RNA processing [Evidence IEA]; GO_process: GO:0008033 - tRNA processing [Evidence IMP] [PMID 9150139]; Lhp1p complement(2166339..2167325) Sugiyamaella lignohabitans 30037535 AWJ20_5309 CDS AWJ20_5309 NC_031673.1 2167731 2168354 R uncharacterized protein complement(2167731..2168354) Sugiyamaella lignohabitans 30037536 AWJ20_5310 CDS YPQ2 NC_031673.1 2169804 2171045 R Putative vacuolar membrane transporter for cationic amino acids; likely contributes to amino acid homeostasis by exporting cationic amino acids from the vacuole; member of the PQ-loop family, with seven transmembrane domains; mutant phenotype is functionally complemented by rat PQLC2 vacuolar transporter; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 14562095]; GO_component: GO:0071627 - integral component of fungal-type vacuolar membrane [Evidence IDA] [PMID 23169667]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0015326 - cationic amino acid transmembrane transporter activity [Evidence IMP,ISO] [PMID 23169667]; GO_process: GO:0006865 - amino acid transport [Evidence IEA]; GO_process: GO:0034488 - basic amino acid transmembrane export from vacuole [Evidence IMP,ISO] [PMID 23169667]; GO_process: GO:0006810 - transport [Evidence IEA]; Ypq2p complement(2169804..2171045) Sugiyamaella lignohabitans 30037538 AWJ20_5311 CDS AWJ20_5311 NC_031673.1 2174009 2175709 R uncharacterized protein complement(2174009..2175709) Sugiyamaella lignohabitans 30037539 AWJ20_5312 CDS RPS25B NC_031673.1 2183547 2183864 R Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S25, no bacterial homolog; RPS25B has a paralog, RPS25A, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0022627 - cytosolic small ribosomal subunit [Evidence IDA] [PMID 6814480]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IDA] [PMID 6814480]; GO_process: GO:0002181 - cytoplasmic translation [Evidence IC] [PMID 6814480]; ribosomal 40S subunit protein S25B complement(2183547..2183864) Sugiyamaella lignohabitans 30037540 AWJ20_5313 CDS NUP2 NC_031673.1 2185462 2187810 D nucleoporin NUP2 2185462..2187810 Sugiyamaella lignohabitans 30037541 AWJ20_5314 CDS RSA4 NC_031673.1 2186667 2189676 R WD-repeat protein involved in ribosome biogenesis; may interact with ribosomes; required for maturation and efficient intra-nuclear transport or pre-60S ribosomal subunits, localizes to the nucleolus; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005730 - nucleolus [Evidence IDA] [PMID 16221974]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000027 - ribosomal large subunit assembly [Evidence IMP] [PMID 16221974]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Rsa4p complement(join(2186667..2187370,2188152..2189676)) Sugiyamaella lignohabitans 30037542 AWJ20_5315 CDS LIA1 NC_031673.1 2190194 2191138 D Deoxyhypusine hydroxylase; HEAT-repeat containing metalloenzyme that catalyzes hypusine formation; binds to and is required for the modification of Hyp2p (eIF5A); complements S. pombe mmd1 mutants defective in mitochondrial positioning; protein abundance increases in response to DNA replication stress; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 14562095]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 14562095]; GO_function: GO:0019135 - deoxyhypusine monooxygenase activity [Evidence IEA,IEA,IEA]; GO_function: GO:0019135 - deoxyhypusine monooxygenase activity [Evidence IDA,IMP] [PMID 16371467]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004497 - monooxygenase activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0000226 - microtubule cytoskeleton organization [Evidence IGI,IMP] [PMID 14767070]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]; GO_process: GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IEA,IEA,IEA]; GO_process: GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IDA,IMP] [PMID 16371467]; Lia1p 2190194..2191138 Sugiyamaella lignohabitans 30037543 AWJ20_5316 CDS CCT5 NC_031673.1 2193127 2194512 D Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IPI] [PMID 15704212]; GO_component: GO:0005832 - chaperonin-containing T-complex [Evidence IDA] [PMID 16762366]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IEA]; GO_function: GO:0051082 - unfolded protein binding [Evidence IDA] [PMID 16762366]; GO_process: GO:0044267 - cellular protein metabolic process [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IEA]; GO_process: GO:0006457 - protein folding [Evidence IDA] [PMID 16762366]; Cct5p 2193127..2194512 Sugiyamaella lignohabitans 30037544 AWJ20_5317 CDS AWJ20_5317 NC_031673.1 2194143 2194406 R T-complex protein 1 epsilon subunit complement(2194143..2194406) Sugiyamaella lignohabitans 30037545 AWJ20_5319 CDS CDC12 NC_031673.1 2196187 2197281 D Component of the septin ring that is required for cytokinesis; septins are GTP-binding proteins that assemble into rod-like hetero-oligomers that can associate with other rods to form filaments; septin rings at the mother-bud neck act as scaffolds for recruiting cell division factors and as barriers to prevent diffusion of specific proteins between mother and daughter cells; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0000144 - cellular bud neck septin ring [Evidence IDA] [PMID 3316985]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005937 - mating projection [Evidence IDA] [PMID 18552279]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005628 - prospore membrane [Evidence IDA] [PMID 24390141]; GO_component: GO:0031105 - septin complex [Evidence IEA]; GO_component: GO:0031105 - septin complex [Evidence IDA] [PMID 18550837]; GO_component: GO:0031105 - septin complex [Evidence IPI] [PMID 9813094]; GO_component: GO:0032160 - septin filament array [Evidence IDA] [PMID 15282341]; GO_function: GO:0005545 - 1-phosphatidylinositol binding [Evidence IDA] [PMID 12665577]; GO_function: GO:0005525 - GTP binding [Evidence IEA,IEA]; GO_function: GO:0005525 - GTP binding [Evidence IDA] [PMID 14597621]; GO_function: GO:0003924 - GTPase activity [Evidence IDA] [PMID 14993234]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0032947 - protein complex scaffold [Evidence IMP] [PMID 9442111]; GO_function: GO:0005198 - structural molecule activity [Evidence IDA] [PMID 18550837]; GO_process: GO:0007049 - cell cycle [Evidence IEA,IEA]; GO_process: GO:0051301 - cell division [Evidence IEA]; GO_process: GO:0030011 - maintenance of cell polarity [Evidence IMP] [PMID 10882120]; GO_process: GO:0045860 - positive regulation of protein kinase activity [Evidence IDA] [PMID 14527412]; GO_process: GO:0000921 - septin ring assembly [Evidence IDA] [PMID 12636916]; GO_process: GO:0000921 - septin ring assembly [Evidence IMP] [PMID 14993234]; septin CDC12 2196187..2197281 Sugiyamaella lignohabitans 30037547 AWJ20_5320 CDS RPC34 NC_031673.1 2198015 2198815 R RNA polymerase III subunit C34; interacts with TFIIIB70 and is a key determinant in pol III recruitment by the preinitiation complex; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 10611227]; GO_component: GO:0005666 - DNA-directed RNA polymerase III complex [Evidence IDA] [PMID 3905793]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IPI] [PMID 16962558]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 11914276]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003899 - DNA-directed RNA polymerase activity [Evidence IEA,IEA]; GO_function: GO:0001056 - RNA polymerase III activity [Evidence IDA] [PMID 3905793]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IMP] [PMID 1400451]; GO_process: GO:0042797 - tRNA transcription from RNA polymerase III promoter [Evidence IDA] [PMID 3905793]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Rpc34p complement(2198015..2198815) Sugiyamaella lignohabitans 30037549 AWJ20_5321 CDS TRR1 NC_031673.1 2199618 2200577 R Cytoplasmic thioredoxin reductase; key regulatory enzyme that determines the redox state of the thioredoxin system, which acts as a disulfide reductase system and protects cells against both oxidative and reductive stress; protein abundance increases in response to DNA replication stress; TRR1 has a paralog, TRR2, that arose from the whole genome duplication; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 18406344]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IEA]; GO_component: GO:0005758 - mitochondrial intermembrane space [Evidence IDA] [PMID 22984289]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_function: GO:0008198 - ferrous iron binding [Evidence IDA] [PMID 18406344]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA,IEA]; GO_function: GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IDA] [PMID 7961686]; GO_process: GO:0045454 - cell redox homeostasis [Evidence IDA,IMP] [PMID 9571241]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IGI] [PMID 15051715]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0019430 - removal of superoxide radicals [Evidence IEA]; thioredoxin-disulfide reductase TRR1 complement(2199618..2200577) Sugiyamaella lignohabitans 30037550 AWJ20_5322 CDS YTA12 NC_031673.1 2204489 2206669 D Mitochondrial inner membrane m-AAA protease component; mediates degradation of misfolded or unassembled proteins; also required for correct assembly of mitochondrial enzyme complexes; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 11914276]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0005745 - m-AAA complex [Evidence IDA] [PMID 8681382]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0097002 - mitochondrial inner boundary membrane [Evidence IDA] [PMID 19019989]; GO_component: GO:0005743 - mitochondrial inner membrane [Evidence IDA] [PMID 7929327]; GO_component: GO:0031966 - mitochondrial membrane [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 11914276]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 14576278]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0005524 - ATP binding [Evidence IDA] [PMID 19748354]; GO_function: GO:0016887 - ATPase activity [Evidence IDA,IMP] [PMID 19748354]; GO_function: GO:0016887 - ATPase activity [Evidence ISS] [PMID 7929327]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IEA]; GO_function: GO:0008237 - metallopeptidase activity [Evidence IMP] [PMID 8681382]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0008233 - peptidase activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IPI] [PMID 19748354]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0006461 - protein complex assembly [Evidence IMP] [PMID 8681382]; GO_process: GO:0045041 - protein import into mitochondrial intermembrane space [Evidence TAS] [PMID 12417197]; GO_process: GO:0006508 - proteolysis [Evidence IEA,IEA]; GO_process: GO:0006508 - proteolysis [Evidence IMP] [PMID 8681382]; GO_process: GO:0006465 - signal peptide processing [Evidence IMP] [PMID 12417197]; m-AAA protease subunit YTA12 2204489..2206669 Sugiyamaella lignohabitans 30037551 AWJ20_5323 CDS AAT2 NC_031673.1 2207766 2209046 D Cytosolic aspartate aminotransferase involved in nitrogen metabolism; localizes to peroxisomes in oleate-grown cells; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 9288922]; GO_component: GO:0005777 - peroxisome [Evidence IEA,IEA]; GO_component: GO:0005777 - peroxisome [Evidence IDA,IMP] [PMID 9288922]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IDA] [PMID 1859361]; GO_function: GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IMP] [PMID 9288922]; GO_function: GO:0080130 - L-phenylalanine:2-oxoglutarate aminotransferase activity [Evidence IEA]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO_function: GO:0008483 - transaminase activity [Evidence IEA,IEA]; GO_function: GO:0016740 - transferase activity [Evidence IEA]; GO_process: GO:0006532 - aspartate biosynthetic process [Evidence IMP] [PMID 15780654]; GO_process: GO:0006532 - aspartate biosynthetic process [Evidence IMP] [PMID 9288922]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]; GO_process: GO:0006520 - cellular amino acid metabolic process [Evidence IEA]; aspartate transaminase AAT2 2207766..2209046 Sugiyamaella lignohabitans 30037552 AWJ20_5324 CDS cox24 NC_031673.1 2209654 2210682 D mitochondrial mRNA processing protein Cox24 (predicted) 2209654..2210682 Sugiyamaella lignohabitans 30037553 AWJ20_5325 CDS AWJ20_5325 NC_031673.1 2211921 2212844 D GTPase-activating protein, putative 2211921..2212844 Sugiyamaella lignohabitans 30037554 AWJ20_5326 CDS MSB3 NC_031673.1 2213327 2214160 D Rab GTPase-activating protein; regulates endocytosis via inactivation of Vps21p at endosomes and vacuole fusion via inactivation of Ypt7p at vacuoles; also acts on Ypt52p and Sec4p; required for proper actin organization; also localizes to plasma membrane and sites of polarized growth; relocalizes from bud neck to cytoplasm upon DNA replication stress; similar to the TBC-domain Tre2 oncogene; MSB3 has a paralog, MSB4, that arose from the whole genome duplication; GO_component: GO:0005933 - cellular bud [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IEA]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22593206]; GO_component: GO:0005935 - cellular bud neck [Evidence IDA] [PMID 22842922]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 10679030]; GO_component: GO:0005934 - cellular bud tip [Evidence IDA] [PMID 22842922]; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 22842922]; GO_component: GO:0005829 - cytosol [Evidence IDA] [PMID 22593206]; GO_component: GO:0000329 - fungal-type vacuole membrane [Evidence IDA] [PMID 22593206]; GO_component: GO:0000131 - incipient cellular bud site [Evidence IDA] [PMID 10679030]; GO_component: GO:0005770 - late endosome [Evidence IDA] [PMID 22593206]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 22593206]; GO_component: GO:0000133 - polarisome [Evidence IDA] [PMID 16166638]; GO_function: GO:0005096 - GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IEA]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IDA] [PMID 10559187]; GO_function: GO:0005097 - Rab GTPase activator activity [Evidence IDA,IMP] [PMID 22593206]; GO_process: GO:0032858 - activation of Rab GTPase activity [Evidence IDA] [PMID 22593206]; GO_process: GO:0006897 - endocytosis [Evidence IMP,IPI] [PMID 22593206]; GO_process: GO:0006887 - exocytosis [Evidence IGI] [PMID 12913108]; GO_process: GO:0070649 - formin-nucleated actin cable assembly [Evidence IGI,IPI] [PMID 16166638]; GO_process: GO:0043087 - regulation of GTPase activity [Evidence IMP] [PMID 22593206]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IEA]; GO_process: GO:0032880 - regulation of protein localization [Evidence IMP,IPI] [PMID 22593206]; Msb3p 2213327..2214160 Sugiyamaella lignohabitans 30037555 AWJ20_5328 CDS AWJ20_5328 NC_031673.1 2214681 2215325 R uncharacterized protein complement(2214681..2215325) Sugiyamaella lignohabitans 30037557 AWJ20_5329 CDS DLD2 NC_031673.1 2215700 2217331 D D-lactate dehydrogenase; located in the mitochondrial matrix; GO_component: GO:0005759 - mitochondrial matrix [Evidence IEA]; GO_component: GO:0005759 - mitochondrial matrix [Evidence IDA] [PMID 10509019]; GO_component: GO:0005739 - mitochondrion [Evidence IEA]; GO_component: GO:0005739 - mitochondrion [Evidence IDA] [PMID 16823961]; GO_function: GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IEA]; GO_function: GO:0004458 - D-lactate dehydrogenase (cytochrome) activity [Evidence IDA] [PMID 10509019]; GO_function: GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]; GO_function: GO:0003779 - actin binding [Evidence IMP,IPI] [PMID 15158445]; GO_function: GO:0003779 - actin binding [Evidence IPI] [PMID 7719850]; GO_function: GO:0003824 - catalytic activity [Evidence IEA]; GO_function: GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA,IEA]; GO_function: GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]; GO_process: GO:0006089 - lactate metabolic process [Evidence TAS] [PMID 10509019]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; Dld2p 2215700..2217331 Sugiyamaella lignohabitans 30037558 AWJ20_5330 CDS NDC1 NC_031673.1 2218568 2220142 R Subunit of the transmembrane ring of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport, NPC biogenesis and spindle pole body duplication; homologous to human NDC1; GO_component: GO:0005737 - cytoplasm [Evidence IEA]; GO_component: GO:0005856 - cytoskeleton [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0031965 - nuclear membrane [Evidence IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IEA,IEA]; GO_component: GO:0005643 - nuclear pore [Evidence IDA] [PMID 9864355]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA] [PMID 10684247]; GO_component: GO:0070762 - nuclear pore transmembrane ring [Evidence IDA,IPI] [PMID 19414609]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IEA]; GO_component: GO:0005816 - spindle pole body [Evidence IDA] [PMID 9864355]; GO_function: GO:0017056 - structural constituent of nuclear pore [Evidence IC] [PMID 10684247]; GO_process: GO:0051028 - mRNA transport [Evidence IEA]; GO_process: GO:0006999 - nuclear pore organization [Evidence IGI,IMP] [PMID 15075274]; GO_process: GO:0006999 - nuclear pore organization [Evidence IGI,IMP] [PMID 16682526]; GO_process: GO:0006913 - nucleocytoplasmic transport [Evidence IC] [PMID 9864355]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0030474 - spindle pole body duplication [Evidence IMP] [PMID 15075274]; GO_process: GO:0030474 - spindle pole body duplication [Evidence IMP] [PMID 8349727]; GO_process: GO:0006810 - transport [Evidence IEA]; Ndc1p complement(2218568..2220142) Sugiyamaella lignohabitans 30037560 AWJ20_5331 CDS TRS120 NC_031673.1 2222168 2226070 R Component of transport protein particle (TRAPP) complex II; TRAPPII is a multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating intra-Golgi and endosome-Golgi traffic; GO_component: GO:0005794 - Golgi apparatus [Evidence IEA,IEA]; GO_component: GO:1990071 - TRAPPII protein complex [Evidence IDA] [PMID 11239471]; GO_component: GO:0005769 - early endosome [Evidence IDA] [PMID 16314430]; GO_component: GO:0005802 - trans-Golgi network [Evidence IDA] [PMID 16314430]; GO_function: GO:0017112 - Rab guanyl-nucleotide exchange factor activity [Evidence IMP] [PMID 17041589]; GO_process: GO:0034498 - early endosome to Golgi transport [Evidence IMP] [PMID 16314430]; GO_process: GO:0006891 - intra-Golgi vesicle-mediated transport [Evidence IMP] [PMID 11239471]; GO_process: GO:0032313 - regulation of Rab GTPase activity [Evidence IMP] [PMID 17041589]; GO_process: GO:0006810 - transport [Evidence IEA]; Trs120p complement(2222168..2226070) Sugiyamaella lignohabitans 30037561 AWJ20_5332 CDS RTC1 NC_031673.1 2226840 2230454 D Subunit of the SEA (Seh1-associated) complex; SEA is a coatomer-related complex that associates dynamically with the vacuole; null mutation suppresses cdc13-1 temperature sensitivity; has N-terminal WD-40 repeats and a C-terminal RING motif; GO_component: GO:0035859 - Seh1-associated complex [Evidence IDA] [PMID 21454883]; GO_component: GO:0097042 - extrinsic component of fungal-type vacuolar membrane [Evidence IDA] [PMID 21454883]; GO_component: GO:0000324 - fungal-type vacuole [Evidence IDA] [PMID 14562095]; GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IDA] [PMID 16702403]; GO_component: GO:0005774 - vacuolar membrane [Evidence IEA]; GO_component: GO:0005773 - vacuole [Evidence IEA]; GO_function: GO:0046872 - metal ion binding [Evidence IEA]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_process: GO:0008150 - biological_process [Evidence ND]; GO_process: GO:0015031 - protein transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA]; Rtc1p 2226840..2230454 Sugiyamaella lignohabitans 30037562 AWJ20_5333 CDS RFA2 NC_031673.1 2230831 2231583 D Subunit of heterotrimeric Replication Protein A (RPA); RPA is a highly conserved single-stranded DNA binding protein involved in DNA replication, repair, and recombination; in concert with Sgs1p-Top2p-Rmi1p, stimulates DNA catenation/decatenation activity of Top3p; protein abundance increases in response to DNA replication stress; GO_component: GO:0005662 - DNA replication factor A complex [Evidence IDA] [PMID 2554144]; GO_component: GO:0000781 - chromosome, telomeric region [Evidence IMP] [PMID 14702040]; GO_component: GO:0000794 - condensed nuclear chromosome [Evidence IDA] [PMID 9679065]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IDA] [PMID 7761422]; GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 7761422]; GO_function: GO:0003697 - single-stranded DNA binding [Evidence IDA] [PMID 8804316]; GO_process: GO:0006281 - DNA repair [Evidence IMP] [PMID 9093844]; GO_process: GO:0006260 - DNA replication [Evidence IEA]; GO_process: GO:0006260 - DNA replication [Evidence IMP] [PMID 9093844]; GO_process: GO:0006265 - DNA topological change [Evidence IDA] [PMID 22885009]; GO_process: GO:0006268 - DNA unwinding involved in DNA replication [Evidence IDA] [PMID 2554144]; GO_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IGI] [PMID 9679065]; GO_process: GO:0045184 - establishment of protein localization [Evidence IMP] [PMID 14702040]; GO_process: GO:0030491 - heteroduplex formation [Evidence IDA] [PMID 12226081]; GO_process: GO:0006312 - mitotic recombination [Evidence IPI] [PMID 2554144]; GO_process: GO:0006289 - nucleotide-excision repair [Evidence IDA,IMP] [PMID 8910442]; GO_process: GO:0016567 - protein ubiquitination [Evidence IPI] [PMID 18342608]; GO_process: GO:0007131 - reciprocal meiotic recombination [Evidence IPI] [PMID 2554144]; GO_process: GO:0000722 - telomere maintenance via recombination [Evidence IPI] [PMID 2554144]; GO_process: GO:0007004 - telomere maintenance via telomerase [Evidence IMP] [PMID 14702040]; GO_process: GO:0010833 - telomere maintenance via telomere lengthening [Evidence IMP] [PMID 22354040]; Rfa2p 2230831..2231583 Sugiyamaella lignohabitans 30037563 AWJ20_5334 CDS IRC20 NC_031673.1 2232233 2236735 R E3 ubiquitin-protein ligase IRC20 complement(2232233..2236735) Sugiyamaella lignohabitans 30037564 AWJ20_5335 CDS ERG4 NC_031673.1 2237645 2239081 D C-24(28) sterol reductase; catalyzes the final step in ergosterol biosynthesis; mutants are viable, but lack ergosterol; GO_component: GO:0005783 - endoplasmic reticulum [Evidence IDA] [PMID 10722850]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA,IEA]; GO_function: GO:0000246 - delta24(24-1) sterol reductase activity [Evidence IEA]; GO_function: GO:0000246 - delta24(24-1) sterol reductase activity [Evidence IDA] [PMID 14922]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0016628 - oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO_process: GO:0006696 - ergosterol biosynthetic process [Evidence IMP] [PMID 8125337]; GO_process: GO:0006629 - lipid metabolic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA,IEA]; GO_process: GO:0006694 - steroid biosynthetic process [Evidence IEA]; GO_process: GO:0008202 - steroid metabolic process [Evidence IEA]; GO_process: GO:0016126 - sterol biosynthetic process [Evidence IEA,IEA]; delta(24(24(1)))-sterol reductase 2237645..2239081 Sugiyamaella lignohabitans 30037565 AWJ20_5336 CDS LCP5 NC_031673.1 2239292 2240302 R Essential protein involved in maturation of 18S rRNA; depletion leads to inhibited pre-rRNA processing and reduced polysome levels; localizes primarily to the nucleolus; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO_component: GO:0030532 - small nuclear ribonucleoprotein complex [Evidence TAS] [PMID 10690410]; GO_component: GO:0005732 - small nucleolar ribonucleoprotein complex [Evidence TAS] [PMID 10690410]; GO_function: GO:0003723 - RNA binding [Evidence IDA] [PMID 9814757]; GO_process: GO:0000154 - rRNA modification [Evidence TAS] [PMID 10690410]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0006364 - rRNA processing [Evidence TAS] [PMID 10690410]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Lcp5p complement(2239292..2240302) Sugiyamaella lignohabitans 30037566 AWJ20_5337 CDS NSA2 NC_031673.1 2240765 2241550 D Protein constituent of 66S pre-ribosomal particles; contributes to processing of the 27S pre-rRNA; GO_component: GO:0005730 - nucleolus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 10684247]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 11583614]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 16861225]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 17443350]; GO_component: GO:0030687 - preribosome, large subunit precursor [Evidence IDA] [PMID 22735702]; GO_function: GO:0003674 - molecular_function [Evidence ND]; GO_process: GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16861225]; GO_process: GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Evidence IMP] [PMID 16861225]; GO_process: GO:0006364 - rRNA processing [Evidence IEA]; GO_process: GO:0042273 - ribosomal large subunit biogenesis [Evidence IMP,IPI] [PMID 11583614]; GO_process: GO:0042254 - ribosome biogenesis [Evidence IEA]; Nsa2p 2240765..2241550 Sugiyamaella lignohabitans 30037567 AWJ20_5338 CDS STE6 NC_031673.1 2242278 2246336 R Plasma membrane ATP-binding cassette (ABC) transporter; required for the export of a-factor, catalyzes ATP hydrolysis coupled to a-factor transport; contains 12 transmembrane domains and two ATP binding domains; expressed only in MATa cells; GO_component: GO:0005794 - Golgi apparatus [Evidence IDA] [PMID 8045256]; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 12374868]; GO_component: GO:0043332 - mating projection tip [Evidence IDA] [PMID 7679674]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 7679674]; GO_function: GO:0005524 - ATP binding [Evidence IEA,IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0042626 - ATPase activity, coupled to transmembrane movement of substances [Evidence IEA]; GO_function: GO:0016787 - hydrolase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA,IEA]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 11389139]; GO_function: GO:0015440 - peptide-transporting ATPase activity [Evidence IDA,IMP] [PMID 8626301]; GO_process: GO:0006200 - ATP catabolic process [Evidence IEA]; GO_process: GO:0008152 - metabolic process [Evidence IEA,IEA]; GO_process: GO:0000770 - peptide pheromone export [Evidence IMP] [PMID 2569166]; GO_process: GO:0019236 - response to pheromone [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; ATP-binding cassette alpha-factor transporter STE6 complement(2242278..2246336) Sugiyamaella lignohabitans 30037568 AWJ20_5339 CDS AWJ20_5339 NC_031673.1 2249030 2250688 R uncharacterized protein complement(2249030..2250688) Sugiyamaella lignohabitans 30037569 AWJ20_5340 CDS AWJ20_5340 NC_031673.1 2253950 2255044 D reverse transcriptase 2253950..2255044 Sugiyamaella lignohabitans 30037571 AWJ20_5341 CDS HCM1 NC_031673.1 2258918 2262253 D Forkhead transcription factor; drives S-phase specific expression of genes involved in chromosome segregation, spindle dynamics, and budding; suppressor of calmodulin mutants with specific SPB assembly defects; telomere maintenance role; GO_component: GO:0005737 - cytoplasm [Evidence IEA,IEA]; GO_component: GO:0005737 - cytoplasm [Evidence IDA] [PMID 20847055]; GO_component: GO:0000790 - nuclear chromatin [Evidence IDA] [PMID 12464632]; GO_component: GO:0005634 - nucleus [Evidence IEA,IEA]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 19159085]; GO_component: GO:0005634 - nucleus [Evidence IDA] [PMID 20847055]; GO_component: GO:0005667 - transcription factor complex [Evidence IBA]; GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0003705 - RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity [Evidence IBA]; GO_function: GO:0003690 - double-stranded DNA binding [Evidence IBA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA] [PMID 19111667]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IDA,IMP] [PMID 9920414]; GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0008134 - transcription factor binding [Evidence IBA]; GO_process: GO:0034599 - cellular response to oxidative stress [Evidence IMP] [PMID 20847055]; GO_process: GO:0007005 - mitochondrion organization [Evidence IMP] [PMID 20847055]; GO_process: GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [PMID 8441413]; GO_process: GO:0051090 - regulation of sequence-specific DNA binding transcription factor activity [Evidence IBA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA,IEA]; GO_process: GO:0051300 - spindle pole body organization [Evidence IGI] [PMID 9920414]; GO_process: GO:0006351 - transcription, DNA-templated [Evidence IEA]; Hcm1p 2258918..2262253 Sugiyamaella lignohabitans 30037572 AWJ20_5344 CDS SNF3 NC_031673.1 2265491 2267089 R Plasma membrane low glucose sensor, regulates glucose transport; contains 12 predicted transmembrane segments and a long C-terminal tail required for induction of hexose transporters; also senses fructose and mannose; SNF3 has a paralog, RGT2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2406560]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0005536 - glucose binding [Evidence TAS] [PMID 10477308]; GO_function: GO:0005355 - glucose transmembrane transporter activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0004872 - receptor activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0051594 - detection of glucose [Evidence IGI,IMP] [PMID 8901598]; GO_process: GO:0015755 - fructose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IGI] [PMID 9564039]; GO_process: GO:0015761 - mannose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 18616605]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 10477308]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Snf3p complement(2265491..2267089) Sugiyamaella lignohabitans 30037575 AWJ20_5345 CDS AWJ20_5345 NC_031673.1 2265585 2266759 D uncharacterized protein join(2265585..2265640,2265688..2266759) Sugiyamaella lignohabitans 30037576 AWJ20_5346 CDS SNF3 NC_031673.1 2272215 2273804 R Plasma membrane low glucose sensor, regulates glucose transport; contains 12 predicted transmembrane segments and a long C-terminal tail required for induction of hexose transporters; also senses fructose and mannose; SNF3 has a paralog, RGT2, that arose from the whole genome duplication; GO_component: GO:0016021 - integral component of membrane [Evidence IEA,IEA]; GO_component: GO:0016021 - integral component of membrane [Evidence ISM] [PMID 12192589]; GO_component: GO:0016020 - membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IEA,IEA]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 2406560]; GO_component: GO:0005886 - plasma membrane [Evidence IDA] [PMID 24124599]; GO_function: GO:0005536 - glucose binding [Evidence TAS] [PMID 10477308]; GO_function: GO:0005355 - glucose transmembrane transporter activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0004872 - receptor activity [Evidence TAS] [PMID 10477308]; GO_function: GO:0022891 - substrate-specific transmembrane transporter activity [Evidence IEA]; GO_function: GO:0022857 - transmembrane transporter activity [Evidence IEA]; GO_function: GO:0005215 - transporter activity [Evidence IEA]; GO_process: GO:0008643 - carbohydrate transport [Evidence IEA]; GO_process: GO:0051594 - detection of glucose [Evidence IGI,IMP] [PMID 8901598]; GO_process: GO:0015755 - fructose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0015758 - glucose transport [Evidence IGI] [PMID 9564039]; GO_process: GO:0015761 - mannose transport [Evidence IMP] [PMID 2046678]; GO_process: GO:0045835 - negative regulation of meiosis [Evidence IMP] [PMID 18616605]; GO_process: GO:0007165 - signal transduction [Evidence TAS] [PMID 10477308]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]; GO_process: GO:0006810 - transport [Evidence IEA,IEA]; Snf3p complement(2272215..2273804) Sugiyamaella lignohabitans 30037577 AWJ20_1 mRNA ITR2 NC_031672.1 3059 4897 D AWJ20_1 <3059..>4897 Sugiyamaella lignohabitans 30032752 AWJ20_2 mRNA DUR3 NC_031672.1 4990 6651 R AWJ20_2 complement(<4990..>6651) Sugiyamaella lignohabitans 30033862 AWJ20_3 mRNA AWJ20_3 NC_031672.1 8242 9495 D AWJ20_3 <8242..>9495 Sugiyamaella lignohabitans 30034972 AWJ20_4 mRNA RNA15 NC_031672.1 9623 10366 R AWJ20_4 complement(<9623..>10366) Sugiyamaella lignohabitans 30036082 AWJ20_5 mRNA DST1 NC_031672.1 11423 11992 D AWJ20_5 <11423..>11992 Sugiyamaella lignohabitans 30037192 AWJ20_7 mRNA PEX14 NC_031672.1 16235 17284 R AWJ20_7 complement(<16235..>17284) Sugiyamaella lignohabitans 30037760 AWJ20_8 mRNA lys7 NC_031672.1 19673 20566 D AWJ20_8 <19673..>20566 Sugiyamaella lignohabitans 30037871 AWJ20_9 mRNA AWJ20_9 NC_031672.1 21028 22089 D AWJ20_9 <21028..>22089 Sugiyamaella lignohabitans 30037982 AWJ20_10 mRNA PRX1 NC_031672.1 22567 23658 R AWJ20_10 complement(join(<22567..23382,23440..>23658)) Sugiyamaella lignohabitans 30032753 AWJ20_11 mRNA AWJ20_11 NC_031672.1 23784 24494 R AWJ20_11 complement(<23784..>24494) Sugiyamaella lignohabitans 30032864 AWJ20_12 mRNA CHS3 NC_031672.1 24844 28581 R AWJ20_12 complement(<24844..>28581) Sugiyamaella lignohabitans 30032975 AWJ20_13 mRNA CHS3 NC_031672.1 32456 37627 D AWJ20_13 <32456..>37627 Sugiyamaella lignohabitans 30033086 AWJ20_14 mRNA RPN1 NC_031672.1 37767 40277 R AWJ20_14 complement(<37767..>40277) Sugiyamaella lignohabitans 30033197 AWJ20_15 mRNA AWJ20_15 NC_031672.1 40500 40793 R AWJ20_15 complement(<40500..>40793) Sugiyamaella lignohabitans 30033308 AWJ20_16 mRNA DAP2 NC_031672.1 42237 44834 R AWJ20_16 complement(<42237..>44834) Sugiyamaella lignohabitans 30033419 AWJ20_17 mRNA SLT2 NC_031672.1 45313 46773 R AWJ20_17 complement(<45313..>46773) Sugiyamaella lignohabitans 30033530 AWJ20_18 mRNA RPB8 NC_031672.1 49037 49366 D AWJ20_18 <49037..>49366 Sugiyamaella lignohabitans 30033641 AWJ20_20 mRNA YPS3 NC_031672.1 52538 53896 D AWJ20_20 <52538..>53896 Sugiyamaella lignohabitans 30033863 AWJ20_22 mRNA TPO3 NC_031672.1 55160 56650 D AWJ20_22 <55160..>56650 Sugiyamaella lignohabitans 30034084 AWJ20_23 mRNA MRPL25 NC_031672.1 57051 57665 D AWJ20_23 <57051..>57665 Sugiyamaella lignohabitans 30034195 AWJ20_24 mRNA PCS60 NC_031672.1 57742 59451 R AWJ20_24 complement(<57742..>59451) Sugiyamaella lignohabitans 30034306 AWJ20_25 mRNA SMD1 NC_031672.1 60984 61322 R AWJ20_25 complement(<60984..>61322) Sugiyamaella lignohabitans 30034417 AWJ20_26 mRNA MET7 NC_031672.1 65268 66761 D AWJ20_26 <65268..>66761 Sugiyamaella lignohabitans 30034528 AWJ20_27 mRNA TDP1 NC_031672.1 66962 68458 R AWJ20_27 complement(<66962..>68458) Sugiyamaella lignohabitans 30034639 AWJ20_28 mRNA BOI1 NC_031672.1 71937 74573 D AWJ20_28 <71937..>74573 Sugiyamaella lignohabitans 30034750 AWJ20_29 mRNA CDC27 NC_031672.1 74755 77142 R AWJ20_29 complement(<74755..>77142) Sugiyamaella lignohabitans 30034861 AWJ20_30 mRNA TMN3 NC_031672.1 78732 80636 D AWJ20_30 <78732..>80636 Sugiyamaella lignohabitans 30034973 AWJ20_32 mRNA FDH1 NC_031672.1 87056 87262 R AWJ20_32 complement(<87056..>87262) Sugiyamaella lignohabitans 30035195 AWJ20_33 mRNA FDH1 NC_031672.1 87345 88211 R AWJ20_33 complement(<87345..>88211) Sugiyamaella lignohabitans 30035306 AWJ20_34 mRNA DSD1 NC_031672.1 88842 90113 D AWJ20_34 <88842..>90113 Sugiyamaella lignohabitans 30035417 AWJ20_35 mRNA TAF8 NC_031672.1 90182 92092 R AWJ20_35 complement(<90182..>92092) Sugiyamaella lignohabitans 30035528 AWJ20_36 mRNA DLD1 NC_031672.1 92508 94247 R AWJ20_36 complement(<92508..>94247) Sugiyamaella lignohabitans 30035639 AWJ20_37 mRNA DSK2 NC_031672.1 94768 95985 R AWJ20_37 complement(<94768..>95985) Sugiyamaella lignohabitans 30035749 AWJ20_39 mRNA MAK21 NC_031672.1 96976 100074 R AWJ20_39 complement(<96976..>100074) Sugiyamaella lignohabitans 30035971 AWJ20_40 mRNA MBP1 NC_031672.1 100553 103243 R AWJ20_40 complement(<100553..>103243) Sugiyamaella lignohabitans 30036083 AWJ20_41 mRNA EMP70 NC_031672.1 106800 108671 R AWJ20_41 complement(<106800..>108671) Sugiyamaella lignohabitans 30036194 AWJ20_42 mRNA TRS85 NC_031672.1 109594 111672 D AWJ20_42 <109594..>111672 Sugiyamaella lignohabitans 30036305 AWJ20_43 mRNA FOL1 NC_031672.1 112903 115359 R AWJ20_43 complement(<112903..>115359) Sugiyamaella lignohabitans 30036416 AWJ20_44 mRNA AWJ20_44 NC_031672.1 118444 120015 D AWJ20_44 <118444..>120015 Sugiyamaella lignohabitans 30036527 AWJ20_45 mRNA YAP3 NC_031672.1 122886 123890 D AWJ20_45 <122886..>123890 Sugiyamaella lignohabitans 30036638 AWJ20_46 mRNA TPO1 NC_031672.1 124269 126014 R AWJ20_46 complement(<124269..>126014) Sugiyamaella lignohabitans 30036749 AWJ20_47 mRNA SNF1 NC_031672.1 129232 131217 D AWJ20_47 <129232..>131217 Sugiyamaella lignohabitans 30036859 AWJ20_48 mRNA AWJ20_48 NC_031672.1 131400 132899 R AWJ20_48 complement(<131400..>132899) Sugiyamaella lignohabitans 30036970 AWJ20_49 mRNA HST3 NC_031672.1 135364 136401 D AWJ20_49 <135364..>136401 Sugiyamaella lignohabitans 30037081 AWJ20_50 mRNA JLP1 NC_031672.1 137523 138677 D AWJ20_50 <137523..>138677 Sugiyamaella lignohabitans 30037193 AWJ20_51 mRNA AWJ20_51 NC_031672.1 138819 139469 D AWJ20_51 <138819..>139469 Sugiyamaella lignohabitans 30037304 AWJ20_52 mRNA AWJ20_52 NC_031672.1 151135 154011 R AWJ20_52 complement(<151135..>154011) Sugiyamaella lignohabitans 30037415 AWJ20_53 mRNA CAJ1 NC_031672.1 163382 164872 D AWJ20_53 <163382..>164872 Sugiyamaella lignohabitans 30037525 AWJ20_54 mRNA YCK2 NC_031672.1 165416 166933 R AWJ20_54 complement(<165416..>166933) Sugiyamaella lignohabitans 30037583 AWJ20_55 mRNA AWJ20_55 NC_031672.1 177717 178733 R AWJ20_55 complement(<177717..>178733) Sugiyamaella lignohabitans 30037594 AWJ20_56 mRNA AWJ20_56 NC_031672.1 181958 182758 D AWJ20_56 <181958..>182758 Sugiyamaella lignohabitans 30037605 AWJ20_57 mRNA AWJ20_57 NC_031672.1 183394 188358 D AWJ20_57 <183394..>188358 Sugiyamaella lignohabitans 30037616 AWJ20_58 mRNA UPS2 NC_031672.1 191991 192554 D AWJ20_58 <191991..>192554 Sugiyamaella lignohabitans 30037627 AWJ20_59 mRNA SLM5 NC_031672.1 193004 194410 R AWJ20_59 complement(<193004..>194410) Sugiyamaella lignohabitans 30037638 AWJ20_60 mRNA PLB1 NC_031672.1 198315 200189 D AWJ20_60 <198315..>200189 Sugiyamaella lignohabitans 30037650 AWJ20_61 mRNA AWJ20_61 NC_031672.1 200384 201934 R AWJ20_61 complement(<200384..>201934) Sugiyamaella lignohabitans 30037661 AWJ20_62 mRNA VPS1 NC_031672.1 203639 205672 R AWJ20_62 complement(<203639..>205672) Sugiyamaella lignohabitans 30037672 AWJ20_63 mRNA LAS17 NC_031672.1 206199 208523 R AWJ20_63 complement(<206199..>208523) Sugiyamaella lignohabitans 30037683 AWJ20_64 mRNA AWJ20_64 NC_031672.1 210307 211734 R AWJ20_64 complement(<210307..>211734) Sugiyamaella lignohabitans 30037694 AWJ20_65 mRNA AWJ20_65 NC_031672.1 215475 216728 R AWJ20_65 complement(<215475..>216728) Sugiyamaella lignohabitans 30037705 AWJ20_66 mRNA CAF40 NC_031672.1 217960 219288 R AWJ20_66 complement(<217960..>219288) Sugiyamaella lignohabitans 30037716 AWJ20_67 mRNA HRR25 NC_031672.1 227115 228152 D AWJ20_67 <227115..>228152 Sugiyamaella lignohabitans 30037727 AWJ20_68 mRNA NPY1 NC_031672.1 228875 230263 D AWJ20_68 <228875..>230263 Sugiyamaella lignohabitans 30037738 AWJ20_69 mRNA MSS4 NC_031672.1 233185 235227 D AWJ20_69 <233185..>235227 Sugiyamaella lignohabitans 30037749 AWJ20_70 mRNA GLO2 NC_031672.1 237728 238030 R AWJ20_70 complement(<237728..>238030) Sugiyamaella lignohabitans 30037761 AWJ20_71 mRNA AWJ20_71 NC_031672.1 240865 241452 D AWJ20_71 <240865..>241452 Sugiyamaella lignohabitans 30037772 AWJ20_72 mRNA SEC63 NC_031672.1 242359 244443 D AWJ20_72 <242359..>244443 Sugiyamaella lignohabitans 30037783 AWJ20_73 mRNA CUE5 NC_031672.1 245468 246964 R AWJ20_73 complement(<245468..>246964) Sugiyamaella lignohabitans 30037794 AWJ20_74 mRNA MEX67 NC_031672.1 248059 249867 D AWJ20_74 <248059..>249867 Sugiyamaella lignohabitans 30037805 AWJ20_75 mRNA ERG5 NC_031672.1 251796 253397 R AWJ20_75 complement(<251796..>253397) Sugiyamaella lignohabitans 30037816 AWJ20_76 mRNA UGA4 NC_031672.1 255830 256993 R AWJ20_76 complement(<255830..>256993) Sugiyamaella lignohabitans 30037827 AWJ20_77 mRNA AWJ20_77 NC_031672.1 259206 260735 D AWJ20_77 <259206..>260735 Sugiyamaella lignohabitans 30037838 AWJ20_78 mRNA MID1 NC_031672.1 262714 264360 D AWJ20_78 <262714..>264360 Sugiyamaella lignohabitans 30037849 AWJ20_79 mRNA PUS4 NC_031672.1 264410 265621 R AWJ20_79 complement(<264410..>265621) Sugiyamaella lignohabitans 30037860 AWJ20_80 mRNA SHR5 NC_031672.1 265857 266546 R AWJ20_80 complement(<265857..>266546) Sugiyamaella lignohabitans 30037872 AWJ20_81 mRNA MDL2 NC_031672.1 267532 270087 D AWJ20_81 <267532..>270087 Sugiyamaella lignohabitans 30037883 AWJ20_82 mRNA HNM1 NC_031672.1 270632 272203 D AWJ20_82 <270632..>272203 Sugiyamaella lignohabitans 30037894 AWJ20_83 mRNA VBA5 NC_031672.1 277639 279300 D AWJ20_83 <277639..>279300 Sugiyamaella lignohabitans 30037905 AWJ20_84 mRNA YSP2 NC_031672.1 281146 283800 D AWJ20_84 <281146..>283800 Sugiyamaella lignohabitans 30037916 AWJ20_85 mRNA AWJ20_85 NC_031672.1 283843 284679 R AWJ20_85 complement(<283843..>284679) Sugiyamaella lignohabitans 30037927 AWJ20_86 mRNA AWJ20_86 NC_031672.1 285576 287024 D AWJ20_86 <285576..>287024 Sugiyamaella lignohabitans 30037938 AWJ20_88 mRNA ERG13 NC_031672.1 290253 291464 R AWJ20_88 complement(<290253..>291464) Sugiyamaella lignohabitans 30037960 AWJ20_89 mRNA LDB17 NC_031672.1 295364 296728 D AWJ20_89 <295364..>296728 Sugiyamaella lignohabitans 30037971 AWJ20_90 mRNA AWJ20_90 NC_031672.1 296823 297761 R AWJ20_90 complement(<296823..>297761) Sugiyamaella lignohabitans 30037983 AWJ20_91 mRNA AWJ20_91 NC_031672.1 300065 300874 D AWJ20_91 <300065..>300874 Sugiyamaella lignohabitans 30037994 AWJ20_92 mRNA RCY1 NC_031672.1 300953 303595 R AWJ20_92 complement(<300953..>303595) Sugiyamaella lignohabitans 30038005 AWJ20_93 mRNA SGD1 NC_031672.1 303972 306851 D AWJ20_93 <303972..>306851 Sugiyamaella lignohabitans 30038016 AWJ20_94 mRNA CAB4 NC_031672.1 306924 307952 R AWJ20_94 complement(<306924..>307952) Sugiyamaella lignohabitans 30038027 AWJ20_95 mRNA CWC22 NC_031672.1 311106 314132 D AWJ20_95 <311106..>314132 Sugiyamaella lignohabitans 30038038 AWJ20_96 mRNA LPD1 NC_031672.1 315673 316830 D AWJ20_96 <315673..>316830 Sugiyamaella lignohabitans 30038049 AWJ20_97 mRNA AWJ20_97 NC_031672.1 315747 316049 R AWJ20_97 complement(<315747..>316049) Sugiyamaella lignohabitans 30038060 AWJ20_98 mRNA RAD51 NC_031672.1 317652 318515 R AWJ20_98 complement(<317652..>318515) Sugiyamaella lignohabitans 30038071 AWJ20_99 mRNA CTS1 NC_031672.1 326344 328092 D AWJ20_99 <326344..>328092 Sugiyamaella lignohabitans 30038082 AWJ20_100 mRNA SEC7 NC_031672.1 330231 332741 D AWJ20_100 <330231..>332741 Sugiyamaella lignohabitans 30032754 AWJ20_101 mRNA PUP3 NC_031672.1 333438 334013 D AWJ20_101 <333438..>334013 Sugiyamaella lignohabitans 30032765 AWJ20_102 mRNA AWJ20_102 NC_031672.1 334906 336996 D AWJ20_102 <334906..>336996 Sugiyamaella lignohabitans 30032776 AWJ20_103 mRNA TSC11 NC_031672.1 339086 343338 D AWJ20_103 join(<339086..339241,339436..>343338) Sugiyamaella lignohabitans 30032787 AWJ20_104 mRNA NMD3 NC_031672.1 343924 345444 D AWJ20_104 <343924..>345444 Sugiyamaella lignohabitans 30032798 AWJ20_105 mRNA MPP10 NC_031672.1 345783 347639 D AWJ20_105 <345783..>347639 Sugiyamaella lignohabitans 30032809 AWJ20_106 mRNA AWJ20_106 NC_031672.1 347803 349416 R AWJ20_106 complement(<347803..>349416) Sugiyamaella lignohabitans 30032820 AWJ20_107 mRNA PDX1 NC_031672.1 350257 351528 D AWJ20_107 <350257..>351528 Sugiyamaella lignohabitans 30032831 AWJ20_108 mRNA AWJ20_108 NC_031672.1 351670 352785 R AWJ20_108 complement(<351670..>352785) Sugiyamaella lignohabitans 30032842 AWJ20_109 mRNA AWJ20_109 NC_031672.1 353688 355778 D AWJ20_109 <353688..>355778 Sugiyamaella lignohabitans 30032853 AWJ20_111 mRNA AWJ20_111 NC_031672.1 356310 358163 R AWJ20_111 complement(<356310..>358163) Sugiyamaella lignohabitans 30032876 AWJ20_113 mRNA AWJ20_113 NC_031672.1 360954 362033 R AWJ20_113 complement(<360954..>362033) Sugiyamaella lignohabitans 30032898 AWJ20_114 mRNA COX10 NC_031672.1 362363 363877 R AWJ20_114 complement(<362363..>363877) Sugiyamaella lignohabitans 30032909 AWJ20_115 mRNA AWJ20_115 NC_031672.1 364750 365847 R AWJ20_115 complement(<364750..>365847) Sugiyamaella lignohabitans 30032920 AWJ20_116 mRNA INP53 NC_031672.1 367099 368109 R AWJ20_116 complement(<367099..>368109) Sugiyamaella lignohabitans 30032931 AWJ20_117 mRNA AWJ20_117 NC_031672.1 368189 371158 R AWJ20_117 complement(<368189..>371158) Sugiyamaella lignohabitans 30032942 AWJ20_118 mRNA SSO2 NC_031672.1 372419 373186 R AWJ20_118 complement(<372419..>373186) Sugiyamaella lignohabitans 30032953 AWJ20_119 mRNA PGI1 NC_031672.1 381201 382856 D AWJ20_119 <381201..>382856 Sugiyamaella lignohabitans 30032964 AWJ20_120 mRNA AWJ20_120 NC_031672.1 384229 384924 D AWJ20_120 <384229..>384924 Sugiyamaella lignohabitans 30032976 AWJ20_121 mRNA KSP1 NC_031672.1 385276 387441 R AWJ20_121 complement(<385276..>387441) Sugiyamaella lignohabitans 30032987 AWJ20_122 mRNA AWJ20_122 NC_031672.1 392838 393656 D AWJ20_122 <392838..>393656 Sugiyamaella lignohabitans 30032998 AWJ20_123 mRNA AWJ20_123 NC_031672.1 395872 398796 D AWJ20_123 <395872..>398796 Sugiyamaella lignohabitans 30033009 AWJ20_124 mRNA ZAP1 NC_031672.1 401484 404087 D AWJ20_124 <401484..>404087 Sugiyamaella lignohabitans 30033020 AWJ20_125 mRNA PEP8 NC_031672.1 404377 405324 R AWJ20_125 complement(<404377..>405324) Sugiyamaella lignohabitans 30033031 AWJ20_126 mRNA AWJ20_126 NC_031672.1 405811 407652 R AWJ20_126 complement(<405811..>407652) Sugiyamaella lignohabitans 30033042 AWJ20_127 mRNA AWJ20_127 NC_031672.1 408233 409825 R AWJ20_127 complement(<408233..>409825) Sugiyamaella lignohabitans 30033053 AWJ20_128 mRNA AWJ20_128 NC_031672.1 410363 411307 D AWJ20_128 <410363..>411307 Sugiyamaella lignohabitans 30033064 AWJ20_129 mRNA AWJ20_129 NC_031672.1 411573 413339 R AWJ20_129 complement(<411573..>413339) Sugiyamaella lignohabitans 30033075 AWJ20_130 mRNA AWJ20_130 NC_031672.1 414933 416363 R AWJ20_130 complement(<414933..>416363) Sugiyamaella lignohabitans 30033087 AWJ20_131 mRNA MEP2 NC_031672.1 420374 421774 D AWJ20_131 <420374..>421774 Sugiyamaella lignohabitans 30033098 AWJ20_132 mRNA AMO2 NC_031672.1 422094 424100 R AWJ20_132 complement(<422094..>424100) Sugiyamaella lignohabitans 30033109 AWJ20_133 mRNA MNN10 NC_031672.1 425344 426708 R AWJ20_133 complement(<425344..>426708) Sugiyamaella lignohabitans 30033120 AWJ20_134 mRNA HOC1 NC_031672.1 429548 430714 R AWJ20_134 complement(<429548..>430714) Sugiyamaella lignohabitans 30033131 AWJ20_135 mRNA MOG1 NC_031672.1 431722 432381 R AWJ20_135 complement(<431722..>432381) Sugiyamaella lignohabitans 30033142 AWJ20_136 mRNA URB2 NC_031672.1 433916 436552 D AWJ20_136 <433916..>436552 Sugiyamaella lignohabitans 30033153 AWJ20_137 mRNA MIT1 NC_031672.1 441333 442730 D AWJ20_137 <441333..>442730 Sugiyamaella lignohabitans 30033164 AWJ20_138 mRNA rad4 NC_031672.1 445023 446948 D AWJ20_138 <445023..>446948 Sugiyamaella lignohabitans 30033175 AWJ20_139 mRNA RIT1 NC_031672.1 447292 448296 R AWJ20_139 complement(<447292..>448296) Sugiyamaella lignohabitans 30033186 AWJ20_140 mRNA RIT1 NC_031672.1 448499 448852 R AWJ20_140 complement(<448499..>448852) Sugiyamaella lignohabitans 30033198 AWJ20_141 mRNA FPR4 NC_031672.1 450374 451582 D AWJ20_141 <450374..>451582 Sugiyamaella lignohabitans 30033209 AWJ20_142 mRNA SEC1 NC_031672.1 451808 453898 R AWJ20_142 complement(<451808..>453898) Sugiyamaella lignohabitans 30033220 AWJ20_143 mRNA PAF1 NC_031672.1 454917 456149 R AWJ20_143 complement(<454917..>456149) Sugiyamaella lignohabitans 30033231 AWJ20_144 mRNA PET8 NC_031672.1 457981 458799 R AWJ20_144 complement(<457981..>458799) Sugiyamaella lignohabitans 30033242 AWJ20_145 mRNA NFS1 NC_031672.1 459771 461255 D AWJ20_145 <459771..>461255 Sugiyamaella lignohabitans 30033253 AWJ20_146 mRNA HPA2 NC_031672.1 461730 462188 D AWJ20_146 <461730..>462188 Sugiyamaella lignohabitans 30033264 AWJ20_147 mRNA BFA1 NC_031672.1 462286 464847 R AWJ20_147 complement(<462286..>464847) Sugiyamaella lignohabitans 30033275 AWJ20_148 mRNA KIP1 NC_031672.1 465170 468430 R AWJ20_148 complement(<465170..>468430) Sugiyamaella lignohabitans 30033286 AWJ20_149 mRNA CAT5 NC_031672.1 469640 470230 R AWJ20_149 complement(<469640..>470230) Sugiyamaella lignohabitans 30033297 AWJ20_150 mRNA CNE1 NC_031672.1 472691 474421 D AWJ20_150 <472691..>474421 Sugiyamaella lignohabitans 30033309 AWJ20_151 mRNA BUD3 NC_031672.1 475806 480002 D AWJ20_151 <475806..>480002 Sugiyamaella lignohabitans 30033320 AWJ20_152 mRNA AWJ20_152 NC_031672.1 480361 481695 R AWJ20_152 complement(<480361..>481695) Sugiyamaella lignohabitans 30033331 AWJ20_153 mRNA GSF2 NC_031672.1 488874 489359 R AWJ20_153 complement(<488874..>489359) Sugiyamaella lignohabitans 30033342 AWJ20_154 mRNA RSE1 NC_031672.1 492373 496050 D AWJ20_154 <492373..>496050 Sugiyamaella lignohabitans 30033353 AWJ20_155 mRNA PTR3 NC_031672.1 496166 498571 R AWJ20_155 complement(<496166..>498571) Sugiyamaella lignohabitans 30033364 AWJ20_156 mRNA APD1 NC_031672.1 499919 500650 R AWJ20_156 complement(<499919..>500650) Sugiyamaella lignohabitans 30033375 AWJ20_157 mRNA AWJ20_157 NC_031672.1 501788 502357 R AWJ20_157 complement(<501788..>502357) Sugiyamaella lignohabitans 30033386 AWJ20_158 mRNA JLP1 NC_031672.1 503259 504443 R AWJ20_158 complement(<503259..>504443) Sugiyamaella lignohabitans 30033397 AWJ20_159 mRNA SEO1 NC_031672.1 505286 506869 D AWJ20_159 <505286..>506869 Sugiyamaella lignohabitans 30033408 AWJ20_160 mRNA AWJ20_160 NC_031672.1 507292 508113 D AWJ20_160 <507292..>508113 Sugiyamaella lignohabitans 30033420 AWJ20_161 mRNA STL1 NC_031672.1 509317 510801 D AWJ20_161 <509317..>510801 Sugiyamaella lignohabitans 30033431 AWJ20_162 mRNA DCC1 NC_031672.1 511409 512173 R AWJ20_162 complement(<511409..>512173) Sugiyamaella lignohabitans 30033442 AWJ20_163 mRNA RAD54 NC_031672.1 512409 515585 D AWJ20_163 <512409..>515585 Sugiyamaella lignohabitans 30033453 AWJ20_164 mRNA FAS2 NC_031672.1 515730 521126 R AWJ20_164 complement(<515730..>521126) Sugiyamaella lignohabitans 30033464 AWJ20_165 mRNA GPI8 NC_031672.1 522891 524120 R AWJ20_165 complement(<522891..>524120) Sugiyamaella lignohabitans 30033475 AWJ20_166 mRNA IRC3 NC_031672.1 525252 527288 D AWJ20_166 <525252..>527288 Sugiyamaella lignohabitans 30033486 AWJ20_167 mRNA AWJ20_167 NC_031672.1 527434 529569 D AWJ20_167 <527434..>529569 Sugiyamaella lignohabitans 30033497 AWJ20_168 mRNA UBX5 NC_031672.1 529766 531430 R AWJ20_168 complement(<529766..>531430) Sugiyamaella lignohabitans 30033508 AWJ20_169 mRNA TNA1 NC_031672.1 533331 534845 D AWJ20_169 <533331..>534845 Sugiyamaella lignohabitans 30033519 AWJ20_170 mRNA AWJ20_170 NC_031672.1 535821 536402 D AWJ20_170 <535821..>536402 Sugiyamaella lignohabitans 30033531 AWJ20_171 mRNA MRF1 NC_031672.1 537433 538800 R AWJ20_171 complement(<537433..>538800) Sugiyamaella lignohabitans 30033542 AWJ20_172 mRNA AWJ20_172 NC_031672.1 539360 539953 D AWJ20_172 <539360..>539953 Sugiyamaella lignohabitans 30033553 AWJ20_173 mRNA DOT1 NC_031672.1 540086 541918 R AWJ20_173 complement(<540086..>541918) Sugiyamaella lignohabitans 30033564 AWJ20_174 mRNA GPI10 NC_031672.1 542581 544245 D AWJ20_174 <542581..>544245 Sugiyamaella lignohabitans 30033575 AWJ20_175 mRNA UNG1 NC_031672.1 544341 545237 R AWJ20_175 complement(<544341..>545237) Sugiyamaella lignohabitans 30033586 AWJ20_176 mRNA MSS2 NC_031672.1 546078 547541 R AWJ20_176 complement(<546078..>547541) Sugiyamaella lignohabitans 30033597 AWJ20_177 mRNA SNF2 NC_031672.1 553718 558487 D AWJ20_177 <553718..>558487 Sugiyamaella lignohabitans 30033608 AWJ20_178 mRNA INO80 NC_031672.1 564683 569263 D AWJ20_178 <564683..>569263 Sugiyamaella lignohabitans 30033619 AWJ20_179 mRNA NPP1 NC_031672.1 570091 572439 D AWJ20_179 <570091..>572439 Sugiyamaella lignohabitans 30033630 AWJ20_180 mRNA AWJ20_180 NC_031672.1 572597 574318 R AWJ20_180 complement(<572597..>574318) Sugiyamaella lignohabitans 30033642 AWJ20_181 mRNA BET3 NC_031672.1 575899 576312 R AWJ20_181 complement(<575899..>576312) Sugiyamaella lignohabitans 30033653 AWJ20_182 mRNA ERG12 NC_031672.1 576947 578164 D AWJ20_182 <576947..>578164 Sugiyamaella lignohabitans 30033664 AWJ20_183 mRNA FSF1 NC_031672.1 578378 579361 R AWJ20_183 complement(<578378..>579361) Sugiyamaella lignohabitans 30033675 AWJ20_184 mRNA GUA1 NC_031672.1 580465 582048 R AWJ20_184 complement(<580465..>582048) Sugiyamaella lignohabitans 30033686 AWJ20_185 mRNA RAM2 NC_031672.1 582904 583980 D AWJ20_185 <582904..>583980 Sugiyamaella lignohabitans 30033697 AWJ20_186 mRNA CHA1 NC_031672.1 584733 585803 R AWJ20_186 complement(<584733..>585803) Sugiyamaella lignohabitans 30033708 AWJ20_187 mRNA NOG1 NC_031672.1 587294 589237 R AWJ20_187 complement(<587294..>589237) Sugiyamaella lignohabitans 30033719 AWJ20_188 mRNA AWJ20_188 NC_031672.1 591808 592320 D AWJ20_188 <591808..>592320 Sugiyamaella lignohabitans 30033730 AWJ20_189 mRNA CMR3 NC_031672.1 592836 594251 R AWJ20_189 complement(<592836..>594251) Sugiyamaella lignohabitans 30033741 AWJ20_190 mRNA AWJ20_190 NC_031672.1 599111 600202 D AWJ20_190 <599111..>600202 Sugiyamaella lignohabitans 30033753 AWJ20_191 mRNA MNN9 NC_031672.1 607793 608863 D AWJ20_191 <607793..>608863 Sugiyamaella lignohabitans 30033763 AWJ20_192 mRNA EMP24 NC_031672.1 610869 611369 D AWJ20_192 <610869..>611369 Sugiyamaella lignohabitans 30033774 AWJ20_193 mRNA THI73 NC_031672.1 619707 621299 R AWJ20_193 complement(<619707..>621299) Sugiyamaella lignohabitans 30033785 AWJ20_194 mRNA EPL1 NC_031672.1 625900 628782 D AWJ20_194 <625900..>628782 Sugiyamaella lignohabitans 30033796 AWJ20_195 mRNA CAM1 NC_031672.1 630824 631774 D AWJ20_195 <630824..>631774 Sugiyamaella lignohabitans 30033807 AWJ20_196 mRNA AWJ20_196 NC_031672.1 632487 634517 R AWJ20_196 complement(<632487..>634517) Sugiyamaella lignohabitans 30033818 AWJ20_197 mRNA LTE1 NC_031672.1 637237 640779 R AWJ20_197 complement(<637237..>640779) Sugiyamaella lignohabitans 30033829 AWJ20_198 mRNA AWJ20_198 NC_031672.1 643165 644724 R AWJ20_198 complement(<643165..>644724) Sugiyamaella lignohabitans 30033840 AWJ20_199 mRNA BUD6 NC_031672.1 646449 649100 D AWJ20_199 <646449..>649100 Sugiyamaella lignohabitans 30033851 AWJ20_200 mRNA EST2 NC_031672.1 649389 652592 R AWJ20_200 complement(<649389..>652592) Sugiyamaella lignohabitans 30033864 AWJ20_201 mRNA SFH1 NC_031672.1 652819 653895 D AWJ20_201 <652819..>653895 Sugiyamaella lignohabitans 30033875 AWJ20_202 mRNA DSE1 NC_031672.1 655692 657173 D AWJ20_202 <655692..>657173 Sugiyamaella lignohabitans 30033886 AWJ20_203 mRNA EAF3 NC_031672.1 657634 658689 R AWJ20_203 complement(<657634..>658689) Sugiyamaella lignohabitans 30033896 AWJ20_204 mRNA BNA4 NC_031672.1 659107 660621 D AWJ20_204 <659107..>660621 Sugiyamaella lignohabitans 30033907 AWJ20_205 mRNA SWC4 NC_031672.1 662932 665021 R AWJ20_205 complement(join(<662932..664601,664919..>665021)) Sugiyamaella lignohabitans 30033918 AWJ20_206 mRNA YTM1 NC_031672.1 665452 666810 D AWJ20_206 <665452..>666810 Sugiyamaella lignohabitans 30033929 AWJ20_207 mRNA GFA1 NC_031672.1 667298 670910 R AWJ20_207 complement(join(<667298..669304,670842..>670910)) Sugiyamaella lignohabitans 30033940 AWJ20_208 mRNA BSC6 NC_031672.1 674142 675548 R AWJ20_208 complement(<674142..>675548) Sugiyamaella lignohabitans 30033951 AWJ20_210 mRNA ABP140 NC_031672.1 676544 677500 D AWJ20_210 <676544..>677500 Sugiyamaella lignohabitans 30033974 AWJ20_211 mRNA ENV9 NC_031672.1 677531 678349 R AWJ20_211 complement(<677531..>678349) Sugiyamaella lignohabitans 30033985 AWJ20_212 mRNA AWJ20_212 NC_031672.1 680825 682444 R AWJ20_212 complement(join(<680825..681416,681564..>682444)) Sugiyamaella lignohabitans 30033996 AWJ20_213 mRNA AWJ20_213 NC_031672.1 683097 684227 R AWJ20_213 complement(<683097..>684227) Sugiyamaella lignohabitans 30034007 AWJ20_214 mRNA AWJ20_214 NC_031672.1 684631 685875 R AWJ20_214 complement(<684631..>685875) Sugiyamaella lignohabitans 30034018 AWJ20_215 mRNA tam14 NC_031672.1 688654 689403 R AWJ20_215 complement(<688654..>689403) Sugiyamaella lignohabitans 30034029 AWJ20_216 mRNA NOC3 NC_031672.1 689818 691890 D AWJ20_216 <689818..>691890 Sugiyamaella lignohabitans 30034040 AWJ20_217 mRNA AWJ20_217 NC_031672.1 695480 696115 D AWJ20_217 <695480..>696115 Sugiyamaella lignohabitans 30034051 AWJ20_218 mRNA AWJ20_218 NC_031672.1 696333 697175 D AWJ20_218 <696333..>697175 Sugiyamaella lignohabitans 30034062 AWJ20_219 mRNA AWJ20_219 NC_031672.1 697550 699979 D AWJ20_219 <697550..>699979 Sugiyamaella lignohabitans 30034073 AWJ20_220 mRNA AWJ20_220 NC_031672.1 706765 707160 D AWJ20_220 <706765..>707160 Sugiyamaella lignohabitans 30034085 AWJ20_221 mRNA AWJ20_221 NC_031672.1 708488 709039 D AWJ20_221 <708488..>709039 Sugiyamaella lignohabitans 30034096 AWJ20_222 mRNA PEX3 NC_031672.1 710428 711885 R AWJ20_222 complement(<710428..>711885) Sugiyamaella lignohabitans 30034107 AWJ20_223 mRNA AWJ20_223 NC_031672.1 713600 714892 D AWJ20_223 <713600..>714892 Sugiyamaella lignohabitans 30034118 AWJ20_224 mRNA PCD1 NC_031672.1 715148 715918 R AWJ20_224 complement(<715148..>715918) Sugiyamaella lignohabitans 30034129 AWJ20_225 mRNA AWJ20_225 NC_031672.1 716670 719402 R AWJ20_225 complement(<716670..>719402) Sugiyamaella lignohabitans 30034140 AWJ20_226 mRNA SAT4 NC_031672.1 726023 728335 D AWJ20_226 <726023..>728335 Sugiyamaella lignohabitans 30034151 AWJ20_227 mRNA RVS161 NC_031672.1 733058 733846 D AWJ20_227 <733058..>733846 Sugiyamaella lignohabitans 30034162 AWJ20_228 mRNA AWJ20_228 NC_031672.1 735245 735589 R AWJ20_228 complement(<735245..>735589) Sugiyamaella lignohabitans 30034173 AWJ20_229 mRNA AWJ20_229 NC_031672.1 738444 740516 R AWJ20_229 complement(<738444..>740516) Sugiyamaella lignohabitans 30034184 AWJ20_231 mRNA LYS14 NC_031672.1 741283 742779 R AWJ20_231 complement(<741283..>742779) Sugiyamaella lignohabitans 30034207 AWJ20_234 mRNA AVL9 NC_031672.1 745451 748096 D AWJ20_234 <745451..>748096 Sugiyamaella lignohabitans 30034240 AWJ20_235 mRNA AVL9 NC_031672.1 748317 749018 D AWJ20_235 <748317..>749018 Sugiyamaella lignohabitans 30034251 AWJ20_236 mRNA RGP1 NC_031672.1 749142 751544 R AWJ20_236 complement(<749142..>751544) Sugiyamaella lignohabitans 30034262 AWJ20_237 mRNA RRP45 NC_031672.1 752076 753038 R AWJ20_237 complement(<752076..>753038) Sugiyamaella lignohabitans 30034273 AWJ20_238 mRNA TPO1 NC_031672.1 753396 755045 R AWJ20_238 complement(<753396..>755045) Sugiyamaella lignohabitans 30034284 AWJ20_239 mRNA ERG10 NC_031672.1 759571 760761 D AWJ20_239 <759571..>760761 Sugiyamaella lignohabitans 30034295 AWJ20_240 mRNA AWJ20_240 NC_031672.1 760146 760397 R AWJ20_240 complement(<760146..>760397) Sugiyamaella lignohabitans 30034307 AWJ20_241 mRNA RPN10 NC_031672.1 761087 761872 R AWJ20_241 complement(<761087..>761872) Sugiyamaella lignohabitans 30034318 AWJ20_242 mRNA MRPL23 NC_031672.1 764320 764739 R AWJ20_242 complement(<764320..>764739) Sugiyamaella lignohabitans 30034329 AWJ20_243 mRNA MET5 NC_031672.1 765304 769746 R AWJ20_243 complement(join(<765304..769658,769725..>769746)) Sugiyamaella lignohabitans 30034340 AWJ20_244 mRNA AWJ20_244 NC_031672.1 771439 772680 D AWJ20_244 <771439..>772680 Sugiyamaella lignohabitans 30034351 AWJ20_245 mRNA AWJ20_245 NC_031672.1 773653 775821 D AWJ20_245 <773653..>775821 Sugiyamaella lignohabitans 30034362 AWJ20_246 mRNA SPS19 NC_031672.1 778393 779268 D AWJ20_246 <778393..>779268 Sugiyamaella lignohabitans 30034373 AWJ20_248 mRNA POX1 NC_031672.1 779945 780619 D AWJ20_248 <779945..>780619 Sugiyamaella lignohabitans 30034395 AWJ20_249 mRNA POX1 NC_031672.1 780800 782134 D AWJ20_249 <780800..>782134 Sugiyamaella lignohabitans 30034406 AWJ20_250 mRNA AWJ20_250 NC_031672.1 782876 783643 D AWJ20_250 <782876..>783643 Sugiyamaella lignohabitans 30034418 AWJ20_251 mRNA HOL1 NC_031672.1 783732 784652 R AWJ20_251 complement(<783732..>784652) Sugiyamaella lignohabitans 30034429 AWJ20_252 mRNA AWJ20_252 NC_031672.1 785009 785449 R AWJ20_252 complement(<785009..>785449) Sugiyamaella lignohabitans 30034440 AWJ20_253 mRNA CDC43 NC_031672.1 786833 787966 D AWJ20_253 <786833..>787966 Sugiyamaella lignohabitans 30034451 AWJ20_255 mRNA RNT1 NC_031672.1 790117 791385 D AWJ20_255 <790117..>791385 Sugiyamaella lignohabitans 30034473 AWJ20_256 mRNA IES6 NC_031672.1 791751 792131 D AWJ20_256 <791751..>792131 Sugiyamaella lignohabitans 30034484 AWJ20_257 mRNA TAD3 NC_031672.1 796540 797376 R AWJ20_257 complement(<796540..>797376) Sugiyamaella lignohabitans 30034495 AWJ20_258 mRNA SOD1 NC_031672.1 803537 804172 R AWJ20_258 complement(<803537..>804172) Sugiyamaella lignohabitans 30034506 AWJ20_259 mRNA AWJ20_259 NC_031672.1 807445 808455 D AWJ20_259 <807445..>808455 Sugiyamaella lignohabitans 30034517 AWJ20_260 mRNA AWJ20_260 NC_031672.1 809303 809662 R AWJ20_260 complement(<809303..>809662) Sugiyamaella lignohabitans 30034529 AWJ20_261 mRNA TUS1 NC_031672.1 809308 812684 D AWJ20_261 join(<809308..812348,812447..>812684) Sugiyamaella lignohabitans 30034540 AWJ20_262 mRNA ROM2 NC_031672.1 812875 814602 D AWJ20_262 <812875..>814602 Sugiyamaella lignohabitans 30034551 AWJ20_263 mRNA AWJ20_263 NC_031672.1 816386 816766 R AWJ20_263 complement(<816386..>816766) Sugiyamaella lignohabitans 30034562 AWJ20_264 mRNA MAG2 NC_031672.1 818272 820653 D AWJ20_264 <818272..>820653 Sugiyamaella lignohabitans 30034573 AWJ20_265 mRNA CRN1 NC_031672.1 820839 822593 R AWJ20_265 complement(<820839..>822593) Sugiyamaella lignohabitans 30034584 AWJ20_266 mRNA ALD4 NC_031672.1 824006 825157 D AWJ20_266 <824006..>825157 Sugiyamaella lignohabitans 30034595 AWJ20_267 mRNA AWJ20_267 NC_031672.1 825275 825508 D AWJ20_267 <825275..>825508 Sugiyamaella lignohabitans 30034606 AWJ20_268 mRNA GLN4 NC_031672.1 833710 836196 D AWJ20_268 <833710..>836196 Sugiyamaella lignohabitans 30034617 AWJ20_269 mRNA MET30 NC_031672.1 839956 842436 D AWJ20_269 <839956..>842436 Sugiyamaella lignohabitans 30034628 AWJ20_270 mRNA GAC1 NC_031672.1 853989 856904 D AWJ20_270 <853989..>856904 Sugiyamaella lignohabitans 30034640 AWJ20_271 mRNA DBP9 NC_031672.1 859190 860950 D AWJ20_271 <859190..>860950 Sugiyamaella lignohabitans 30034651 AWJ20_272 mRNA AWJ20_272 NC_031672.1 861644 862252 R AWJ20_272 complement(<861644..>862252) Sugiyamaella lignohabitans 30034662 AWJ20_273 mRNA GCY1 NC_031672.1 863178 864119 R AWJ20_273 complement(<863178..>864119) Sugiyamaella lignohabitans 30034673 AWJ20_274 mRNA RSB1 NC_031672.1 868545 869027 R AWJ20_274 complement(<868545..>869027) Sugiyamaella lignohabitans 30034684 AWJ20_275 mRNA ARO80 NC_031672.1 872862 876281 D AWJ20_275 <872862..>876281 Sugiyamaella lignohabitans 30034695 AWJ20_276 mRNA JEN1 NC_031672.1 876451 877122 R AWJ20_276 complement(<876451..>877122) Sugiyamaella lignohabitans 30034706 AWJ20_277 mRNA AWJ20_277 NC_031672.1 877483 877821 D AWJ20_277 <877483..>877821 Sugiyamaella lignohabitans 30034717 AWJ20_278 mRNA JEN1 NC_031672.1 877627 877983 R AWJ20_278 complement(<877627..>877983) Sugiyamaella lignohabitans 30034728 AWJ20_279 mRNA AWJ20_279 NC_031672.1 879158 881605 R AWJ20_279 complement(<879158..>881605) Sugiyamaella lignohabitans 30034739 AWJ20_280 mRNA AWJ20_280 NC_031672.1 883138 883896 R AWJ20_280 complement(<883138..>883896) Sugiyamaella lignohabitans 30034751 AWJ20_281 mRNA PLC2 NC_031672.1 885257 886156 D AWJ20_281 <885257..>886156 Sugiyamaella lignohabitans 30034762 AWJ20_282 mRNA MET16 NC_031672.1 886728 887561 D AWJ20_282 <886728..>887561 Sugiyamaella lignohabitans 30034773 AWJ20_283 mRNA DPH2 NC_031672.1 887930 889669 D AWJ20_283 <887930..>889669 Sugiyamaella lignohabitans 30034784 AWJ20_284 mRNA SEN1 NC_031672.1 889766 897309 R AWJ20_284 complement(join(<889766..892799,893153..>897309)) Sugiyamaella lignohabitans 30034795 AWJ20_285 mRNA PRX1 NC_031672.1 898447 899124 R AWJ20_285 complement(<898447..>899124) Sugiyamaella lignohabitans 30034806 AWJ20_288 mRNA PCL6 NC_031672.1 902782 905577 R AWJ20_288 complement(<902782..>905577) Sugiyamaella lignohabitans 30034839 AWJ20_289 mRNA HSP104 NC_031672.1 912132 914804 D AWJ20_289 <912132..>914804 Sugiyamaella lignohabitans 30034850 AWJ20_290 mRNA AWJ20_290 NC_031672.1 913598 913825 R AWJ20_290 complement(<913598..>913825) Sugiyamaella lignohabitans 30034862 AWJ20_291 mRNA TIF6 NC_031672.1 915066 915644 R AWJ20_291 complement(<915066..>915644) Sugiyamaella lignohabitans 30034873 AWJ20_292 mRNA AWJ20_292 NC_031672.1 917035 918666 R AWJ20_292 complement(<917035..>918666) Sugiyamaella lignohabitans 30034884 AWJ20_293 mRNA AWJ20_293 NC_031672.1 921323 922939 R AWJ20_293 complement(<921323..>922939) Sugiyamaella lignohabitans 30034895 AWJ20_294 mRNA AWJ20_294 NC_031672.1 924187 925302 D AWJ20_294 <924187..>925302 Sugiyamaella lignohabitans 30034906 AWJ20_295 mRNA AWJ20_295 NC_031672.1 925546 926142 R AWJ20_295 complement(<925546..>926142) Sugiyamaella lignohabitans 30034917 AWJ20_296 mRNA HNT1 NC_031672.1 928388 928954 D AWJ20_296 <928388..>928954 Sugiyamaella lignohabitans 30034928 AWJ20_297 mRNA CLB2 NC_031672.1 929217 931241 R AWJ20_297 complement(<929217..>931241) Sugiyamaella lignohabitans 30034939 AWJ20_298 mRNA AWJ20_298 NC_031672.1 934497 937007 D AWJ20_298 <934497..>937007 Sugiyamaella lignohabitans 30034950 AWJ20_299 mRNA JJJ3 NC_031672.1 937234 937743 R AWJ20_299 complement(<937234..>937743) Sugiyamaella lignohabitans 30034961 AWJ20_300 mRNA RPA49 NC_031672.1 938459 939697 D AWJ20_300 <938459..>939697 Sugiyamaella lignohabitans 30034974 AWJ20_301 mRNA MAL11 NC_031672.1 940054 941709 R AWJ20_301 complement(<940054..>941709) Sugiyamaella lignohabitans 30034985 AWJ20_302 mRNA AWJ20_302 NC_031672.1 942926 944233 D AWJ20_302 <942926..>944233 Sugiyamaella lignohabitans 30034996 AWJ20_303 mRNA AWJ20_303 NC_031672.1 944475 946499 R AWJ20_303 complement(<944475..>946499) Sugiyamaella lignohabitans 30035007 AWJ20_304 mRNA AWJ20_304 NC_031672.1 947045 948394 D AWJ20_304 <947045..>948394 Sugiyamaella lignohabitans 30035018 AWJ20_305 mRNA AWJ20_305 NC_031672.1 948662 949303 D AWJ20_305 <948662..>949303 Sugiyamaella lignohabitans 30035029 AWJ20_306 mRNA AWJ20_306 NC_031672.1 949782 952166 R AWJ20_306 complement(<949782..>952166) Sugiyamaella lignohabitans 30035040 AWJ20_307 mRNA SES1 NC_031672.1 952947 954305 R AWJ20_307 complement(<952947..>954305) Sugiyamaella lignohabitans 30035051 AWJ20_308 mRNA ESL1 NC_031672.1 957317 960346 D AWJ20_308 <957317..>960346 Sugiyamaella lignohabitans 30035062 AWJ20_309 mRNA AWJ20_309 NC_031672.1 961559 962311 D AWJ20_309 <961559..>962311 Sugiyamaella lignohabitans 30035073 AWJ20_310 mRNA ADE5,7 NC_031672.1 963887 966256 D AWJ20_310 <963887..>966256 Sugiyamaella lignohabitans 30035085 AWJ20_311 mRNA DHH1 NC_031672.1 969152 970762 R AWJ20_311 complement(<969152..>970762) Sugiyamaella lignohabitans 30035096 AWJ20_312 mRNA STE7 NC_031672.1 972230 974227 D AWJ20_312 <972230..>974227 Sugiyamaella lignohabitans 30035107 AWJ20_313 mRNA AWJ20_313 NC_031672.1 974469 974762 R AWJ20_313 complement(<974469..>974762) Sugiyamaella lignohabitans 30035118 AWJ20_314 mRNA CMR1 NC_031672.1 987840 989351 D AWJ20_314 <987840..>989351 Sugiyamaella lignohabitans 30035129 AWJ20_315 mRNA AWJ20_315 NC_031672.1 991873 993621 D AWJ20_315 <991873..>993621 Sugiyamaella lignohabitans 30035140 AWJ20_316 mRNA PRC1 NC_031672.1 993802 994497 R AWJ20_316 complement(<993802..>994497) Sugiyamaella lignohabitans 30035151 AWJ20_317 mRNA AWJ20_317 NC_031672.1 994984 995475 R AWJ20_317 complement(<994984..>995475) Sugiyamaella lignohabitans 30035162 AWJ20_318 mRNA AWJ20_318 NC_031672.1 996453 997715 D AWJ20_318 <996453..>997715 Sugiyamaella lignohabitans 30035173 AWJ20_319 mRNA APL2 NC_031672.1 998912 1001152 R AWJ20_319 complement(<998912..>1001152) Sugiyamaella lignohabitans 30035184 AWJ20_320 mRNA ASC1 NC_031672.1 1002574 1003158 D AWJ20_320 <1002574..>1003158 Sugiyamaella lignohabitans 30035196 AWJ20_321 mRNA OCT1 NC_031672.1 1004747 1007161 R AWJ20_321 complement(<1004747..>1007161) Sugiyamaella lignohabitans 30035207 AWJ20_322 mRNA GLN1 NC_031672.1 1007892 1008998 R AWJ20_322 complement(<1007892..>1008998) Sugiyamaella lignohabitans 30035218 AWJ20_323 mRNA TOD6 NC_031672.1 1022434 1024257 D AWJ20_323 <1022434..>1024257 Sugiyamaella lignohabitans 30035229 AWJ20_324 mRNA SAS3 NC_031672.1 1025407 1027704 R AWJ20_324 complement(<1025407..>1027704) Sugiyamaella lignohabitans 30035240 AWJ20_325 mRNA AIM10 NC_031672.1 1028930 1030585 D AWJ20_325 <1028930..>1030585 Sugiyamaella lignohabitans 30035251 AWJ20_326 mRNA PIN4 NC_031672.1 1031592 1034678 R AWJ20_326 complement(<1031592..>1034678) Sugiyamaella lignohabitans 30035262 AWJ20_327 mRNA IBA57 NC_031672.1 1036396 1037850 D AWJ20_327 <1036396..>1037850 Sugiyamaella lignohabitans 30035273 AWJ20_328 mRNA ARO4 NC_031672.1 1039143 1040264 D AWJ20_328 <1039143..>1040264 Sugiyamaella lignohabitans 30035284 AWJ20_329 mRNA HIS7 NC_031672.1 1042234 1043904 D AWJ20_329 <1042234..>1043904 Sugiyamaella lignohabitans 30035295 AWJ20_330 mRNA VPS75 NC_031672.1 1044129 1044782 R AWJ20_330 complement(<1044129..>1044782) Sugiyamaella lignohabitans 30035307 AWJ20_331 mRNA AWJ20_331 NC_031672.1 1045507 1046907 R AWJ20_331 complement(<1045507..>1046907) Sugiyamaella lignohabitans 30035318 AWJ20_332 mRNA AWJ20_332 NC_031672.1 1048177 1048953 R AWJ20_332 complement(<1048177..>1048953) Sugiyamaella lignohabitans 30035329 AWJ20_334 mRNA CCT3 NC_031672.1 1052311 1053867 D AWJ20_334 <1052311..>1053867 Sugiyamaella lignohabitans 30035351 AWJ20_335 mRNA AWJ20_335 NC_031672.1 1053132 1053512 R AWJ20_335 complement(<1053132..>1053512) Sugiyamaella lignohabitans 30035362 AWJ20_336 mRNA SSU1 NC_031672.1 1054782 1055975 R AWJ20_336 complement(<1054782..>1055975) Sugiyamaella lignohabitans 30035373 AWJ20_338 mRNA AWJ20_338 NC_031672.1 1060633 1062288 D AWJ20_338 <1060633..>1062288 Sugiyamaella lignohabitans 30035395 AWJ20_339 mRNA RPS18B NC_031672.1 1065284 1065661 D AWJ20_339 <1065284..>1065661 Sugiyamaella lignohabitans 30035406 AWJ20_340 mRNA ADO1 NC_031672.1 1068017 1069060 R AWJ20_340 complement(<1068017..>1069060) Sugiyamaella lignohabitans 30035418 AWJ20_341 mRNA FMN1 NC_031672.1 1072257 1072868 R AWJ20_341 complement(<1072257..>1072868) Sugiyamaella lignohabitans 30035429 AWJ20_342 mRNA GLE1 NC_031672.1 1075092 1077197 R AWJ20_342 complement(<1075092..>1077197) Sugiyamaella lignohabitans 30035440 AWJ20_343 mRNA MRPL7 NC_031672.1 1078066 1078944 D AWJ20_343 <1078066..>1078944 Sugiyamaella lignohabitans 30035451 AWJ20_344 mRNA SEC26 NC_031672.1 1079060 1081912 R AWJ20_344 complement(<1079060..>1081912) Sugiyamaella lignohabitans 30035462 AWJ20_345 mRNA LUC7 NC_031672.1 1083658 1084407 R AWJ20_345 complement(<1083658..>1084407) Sugiyamaella lignohabitans 30035473 AWJ20_346 mRNA SWP1 NC_031672.1 1085508 1086065 D AWJ20_346 <1085508..>1086065 Sugiyamaella lignohabitans 30035484 AWJ20_347 mRNA AWJ20_347 NC_031672.1 1086329 1088482 R AWJ20_347 complement(<1086329..>1088482) Sugiyamaella lignohabitans 30035495 AWJ20_348 mRNA LYS4 NC_031672.1 1093402 1095510 R AWJ20_348 complement(<1093402..>1095510) Sugiyamaella lignohabitans 30035506 AWJ20_349 mRNA PRP22 NC_031672.1 1098352 1100556 D AWJ20_349 <1098352..>1100556 Sugiyamaella lignohabitans 30035517 AWJ20_350 mRNA SUI1 NC_031672.1 1101974 1102306 D AWJ20_350 <1101974..>1102306 Sugiyamaella lignohabitans 30035529 AWJ20_351 mRNA NVJ2 NC_031672.1 1102853 1105813 R AWJ20_351 complement(<1102853..>1105813) Sugiyamaella lignohabitans 30035540 AWJ20_353 mRNA AGP2 NC_031672.1 1116191 1117870 R AWJ20_353 complement(<1116191..>1117870) Sugiyamaella lignohabitans 30035562 AWJ20_354 mRNA ETP1 NC_031672.1 1129517 1131691 D AWJ20_354 <1129517..>1131691 Sugiyamaella lignohabitans 30035573 AWJ20_355 mRNA PRS3 NC_031672.1 1132699 1133436 D AWJ20_355 <1132699..>1133436 Sugiyamaella lignohabitans 30035584 AWJ20_356 mRNA AWJ20_356 NC_031672.1 1133631 1134443 R AWJ20_356 complement(<1133631..>1134443) Sugiyamaella lignohabitans 30035595 AWJ20_357 mRNA AWJ20_357 NC_031672.1 1135921 1137705 D AWJ20_357 <1135921..>1137705 Sugiyamaella lignohabitans 30035606 AWJ20_358 mRNA TUB1 NC_031672.1 1137978 1139324 R AWJ20_358 complement(<1137978..>1139324) Sugiyamaella lignohabitans 30035617 AWJ20_359 mRNA ALD5 NC_031672.1 1140701 1142104 R AWJ20_359 complement(<1140701..>1142104) Sugiyamaella lignohabitans 30035628 AWJ20_360 mRNA ADH6 NC_031672.1 1143860 1144945 R AWJ20_360 complement(<1143860..>1144945) Sugiyamaella lignohabitans 30035640 AWJ20_361 mRNA GLK1 NC_031672.1 1147694 1149109 D AWJ20_361 <1147694..>1149109 Sugiyamaella lignohabitans 30035651 AWJ20_362 mRNA YOX1 NC_031672.1 1149439 1152048 R AWJ20_362 complement(<1149439..>1152048) Sugiyamaella lignohabitans 30035662 AWJ20_363 mRNA HSP12 NC_031672.1 1164775 1165140 D AWJ20_363 <1164775..>1165140 Sugiyamaella lignohabitans 30035673 AWJ20_364 mRNA GAT1 NC_031672.1 1167991 1170957 D AWJ20_364 <1167991..>1170957 Sugiyamaella lignohabitans 30035684 AWJ20_365 mRNA SVL3 NC_031672.1 1171769 1173454 R AWJ20_365 complement(<1171769..>1173454) Sugiyamaella lignohabitans 30035695 AWJ20_366 mRNA EGD1 NC_031672.1 1178959 1179405 D AWJ20_366 <1178959..>1179405 Sugiyamaella lignohabitans 30035706 AWJ20_367 mRNA GAD1 NC_031672.1 1182000 1183661 D AWJ20_367 <1182000..>1183661 Sugiyamaella lignohabitans 30035716 AWJ20_368 mRNA PCL5 NC_031672.1 1194756 1196012 R AWJ20_368 complement(<1194756..>1196012) Sugiyamaella lignohabitans 30035727 AWJ20_369 mRNA IVY1 NC_031672.1 1199861 1201993 D AWJ20_369 <1199861..>1201993 Sugiyamaella lignohabitans 30035738 AWJ20_370 mRNA TRM5 NC_031672.1 1202211 1203614 R AWJ20_370 complement(<1202211..>1203614) Sugiyamaella lignohabitans 30035750 AWJ20_371 mRNA OMS1 NC_031672.1 1204497 1205531 D AWJ20_371 <1204497..>1205531 Sugiyamaella lignohabitans 30035761 AWJ20_372 mRNA RRP4 NC_031672.1 1205838 1206914 R AWJ20_372 complement(<1205838..>1206914) Sugiyamaella lignohabitans 30035772 AWJ20_373 mRNA NPL3 NC_031672.1 1207359 1208426 D AWJ20_373 <1207359..>1208426 Sugiyamaella lignohabitans 30035783 AWJ20_374 mRNA AWJ20_374 NC_031672.1 1210128 1212140 R AWJ20_374 complement(<1210128..>1212140) Sugiyamaella lignohabitans 30035794 AWJ20_375 mRNA UBX3 NC_031672.1 1215043 1216905 R AWJ20_375 complement(<1215043..>1216905) Sugiyamaella lignohabitans 30035805 AWJ20_376 mRNA PIF1 NC_031672.1 1217195 1220254 R AWJ20_376 complement(<1217195..>1220254) Sugiyamaella lignohabitans 30035816 AWJ20_377 mRNA OGG1 NC_031672.1 1221114 1222193 D AWJ20_377 <1221114..>1222193 Sugiyamaella lignohabitans 30035827 AWJ20_378 mRNA BUD13 NC_031672.1 1222482 1223486 D AWJ20_378 <1222482..>1223486 Sugiyamaella lignohabitans 30035838 AWJ20_379 mRNA XRN1 NC_031672.1 1223675 1228129 R AWJ20_379 complement(<1223675..>1228129) Sugiyamaella lignohabitans 30035849 AWJ20_380 mRNA AWJ20_380 NC_031672.1 1230438 1232084 D AWJ20_380 <1230438..>1232084 Sugiyamaella lignohabitans 30035861 AWJ20_381 mRNA NUP49 NC_031672.1 1232454 1233995 D AWJ20_381 <1232454..>1233995 Sugiyamaella lignohabitans 30035872 AWJ20_382 mRNA NTH1 NC_031672.1 1234778 1237324 R AWJ20_382 complement(<1234778..>1237324) Sugiyamaella lignohabitans 30035883 AWJ20_383 mRNA FMP41 NC_031672.1 1244056 1244760 D AWJ20_383 <1244056..>1244760 Sugiyamaella lignohabitans 30035894 AWJ20_384 mRNA DCD1 NC_031672.1 1244931 1246004 R AWJ20_384 complement(<1244931..>1246004) Sugiyamaella lignohabitans 30035905 AWJ20_385 mRNA AWJ20_385 NC_031672.1 1247067 1249151 D AWJ20_385 <1247067..>1249151 Sugiyamaella lignohabitans 30035916 AWJ20_386 mRNA PSD1 NC_031672.1 1250255 1252162 D AWJ20_386 <1250255..>1252162 Sugiyamaella lignohabitans 30035927 AWJ20_387 mRNA BSC6 NC_031672.1 1252367 1253797 R AWJ20_387 complement(<1252367..>1253797) Sugiyamaella lignohabitans 30035938 AWJ20_388 mRNA APC1 NC_031672.1 1254736 1257432 R AWJ20_388 complement(<1254736..>1257432) Sugiyamaella lignohabitans 30035949 AWJ20_389 mRNA APC1 NC_031672.1 1257557 1259608 R AWJ20_389 complement(<1257557..>1259608) Sugiyamaella lignohabitans 30035960 AWJ20_390 mRNA FMS1 NC_031672.1 1259902 1261383 R AWJ20_390 complement(<1259902..>1261383) Sugiyamaella lignohabitans 30035972 AWJ20_391 mRNA AWJ20_391 NC_031672.1 1262344 1264959 D AWJ20_391 <1262344..>1264959 Sugiyamaella lignohabitans 30035983 AWJ20_392 mRNA APC2 NC_031672.1 1265210 1267444 D AWJ20_392 <1265210..>1267444 Sugiyamaella lignohabitans 30035994 AWJ20_393 mRNA cdt2 NC_031672.1 1267683 1269143 R AWJ20_393 complement(<1267683..>1269143) Sugiyamaella lignohabitans 30036005 AWJ20_394 mRNA COQ1 NC_031672.1 1273170 1274570 R AWJ20_394 complement(<1273170..>1274570) Sugiyamaella lignohabitans 30036016 AWJ20_395 mRNA RER2 NC_031672.1 1276175 1277113 D AWJ20_395 <1276175..>1277113 Sugiyamaella lignohabitans 30036027 AWJ20_396 mRNA AWJ20_396 NC_031672.1 1276384 1276836 R AWJ20_396 complement(<1276384..>1276836) Sugiyamaella lignohabitans 30036038 AWJ20_397 mRNA RPL11B NC_031672.1 1277376 1277885 R AWJ20_397 complement(<1277376..>1277885) Sugiyamaella lignohabitans 30036049 AWJ20_398 mRNA YRB1 NC_031672.1 1279043 1279279 R AWJ20_398 complement(<1279043..>1279279) Sugiyamaella lignohabitans 30036060 AWJ20_399 mRNA YRB1 NC_031672.1 1279657 1280034 R AWJ20_399 complement(<1279657..>1280034) Sugiyamaella lignohabitans 30036071 AWJ20_400 mRNA PRE2 NC_031672.1 1281702 1282220 D AWJ20_400 <1281702..>1282220 Sugiyamaella lignohabitans 30036084 AWJ20_401 mRNA FHL1 NC_031672.1 1282518 1284965 R AWJ20_401 complement(<1282518..>1284965) Sugiyamaella lignohabitans 30036095 AWJ20_402 mRNA FHL1 NC_031672.1 1285344 1286306 R AWJ20_402 complement(<1285344..>1286306) Sugiyamaella lignohabitans 30036106 AWJ20_403 mRNA PKH3 NC_031672.1 1287296 1288858 R AWJ20_403 complement(<1287296..>1288858) Sugiyamaella lignohabitans 30036117 AWJ20_404 mRNA CTS1 NC_031672.1 1292097 1293983 R AWJ20_404 complement(<1292097..>1293983) Sugiyamaella lignohabitans 30036128 AWJ20_405 mRNA AWJ20_405 NC_031672.1 1295683 1296858 R AWJ20_405 complement(<1295683..>1296858) Sugiyamaella lignohabitans 30036139 AWJ20_406 mRNA SEC8 NC_031672.1 1298203 1301328 R AWJ20_406 complement(<1298203..>1301328) Sugiyamaella lignohabitans 30036150 AWJ20_407 mRNA VPS15 NC_031672.1 1302101 1306153 R AWJ20_407 complement(<1302101..>1306153) Sugiyamaella lignohabitans 30036161 AWJ20_408 mRNA AWJ20_408 NC_031672.1 1311922 1312146 D AWJ20_408 <1311922..>1312146 Sugiyamaella lignohabitans 30036172 AWJ20_409 mRNA AWJ20_409 NC_031672.1 1314763 1317332 D AWJ20_409 join(<1314763..1316065,1316980..>1317332) Sugiyamaella lignohabitans 30036183 AWJ20_410 mRNA MSN4 NC_031672.1 1316552 1318852 R AWJ20_410 complement(<1316552..>1318852) Sugiyamaella lignohabitans 30036195 AWJ20_411 mRNA MDH1 NC_031672.1 1327957 1328658 R AWJ20_411 complement(<1327957..>1328658) Sugiyamaella lignohabitans 30036206 AWJ20_412 mRNA AIM9 NC_031672.1 1330235 1331950 R AWJ20_412 complement(<1330235..>1331950) Sugiyamaella lignohabitans 30036217 AWJ20_413 mRNA INP1 NC_031672.1 1333813 1336509 D AWJ20_413 <1333813..>1336509 Sugiyamaella lignohabitans 30036228 AWJ20_414 mRNA TOM40 NC_031672.1 1337852 1338958 R AWJ20_414 complement(<1337852..>1338958) Sugiyamaella lignohabitans 30036239 AWJ20_415 mRNA AWJ20_415 NC_031672.1 1339430 1340887 R AWJ20_415 complement(<1339430..>1340887) Sugiyamaella lignohabitans 30036250 AWJ20_416 mRNA AWJ20_416 NC_031672.1 1342880 1343473 R AWJ20_416 complement(<1342880..>1343473) Sugiyamaella lignohabitans 30036261 AWJ20_417 mRNA VPH1 NC_031672.1 1344227 1346752 D AWJ20_417 <1344227..>1346752 Sugiyamaella lignohabitans 30036272 AWJ20_418 mRNA LYS21 NC_031672.1 1347956 1349317 R AWJ20_418 complement(<1347956..>1349317) Sugiyamaella lignohabitans 30036283 AWJ20_419 mRNA MOT1 NC_031672.1 1352683 1358226 D AWJ20_419 <1352683..>1358226 Sugiyamaella lignohabitans 30036294 AWJ20_420 mRNA CLP1 NC_031672.1 1358664 1359671 R AWJ20_420 complement(<1358664..>1359671) Sugiyamaella lignohabitans 30036306 AWJ20_421 mRNA AWJ20_421 NC_031672.1 1360356 1360817 D AWJ20_421 <1360356..>1360817 Sugiyamaella lignohabitans 30036317 AWJ20_423 mRNA GDT1 NC_031672.1 1361869 1363554 R AWJ20_423 complement(<1361869..>1363554) Sugiyamaella lignohabitans 30036339 AWJ20_424 mRNA SET6 NC_031672.1 1365057 1366328 D AWJ20_424 <1365057..>1366328 Sugiyamaella lignohabitans 30036350 AWJ20_425 mRNA AWJ20_425 NC_031672.1 1368542 1368889 R AWJ20_425 complement(<1368542..>1368889) Sugiyamaella lignohabitans 30036361 AWJ20_426 mRNA REV3 NC_031672.1 1374074 1374424 D AWJ20_426 <1374074..>1374424 Sugiyamaella lignohabitans 30036372 AWJ20_427 mRNA REV3 NC_031672.1 1374535 1378698 D AWJ20_427 <1374535..>1378698 Sugiyamaella lignohabitans 30036383 AWJ20_428 mRNA MLH3 NC_031672.1 1378816 1380525 R AWJ20_428 complement(<1378816..>1380525) Sugiyamaella lignohabitans 30036394 AWJ20_429 mRNA RPL21B NC_031672.1 1384500 1384823 D AWJ20_429 <1384500..>1384823 Sugiyamaella lignohabitans 30036405 AWJ20_430 mRNA RIM2 NC_031672.1 1385726 1386871 D AWJ20_430 <1385726..>1386871 Sugiyamaella lignohabitans 30036417 AWJ20_431 mRNA APC5 NC_031672.1 1386980 1389841 R AWJ20_431 complement(<1386980..>1389841) Sugiyamaella lignohabitans 30036428 AWJ20_432 mRNA DNA2 NC_031672.1 1391973 1396220 D AWJ20_432 <1391973..>1396220 Sugiyamaella lignohabitans 30036439 AWJ20_433 mRNA ITR1 NC_031672.1 1401066 1401611 R AWJ20_433 complement(<1401066..>1401611) Sugiyamaella lignohabitans 30036450 AWJ20_439 mRNA RTN1 NC_031672.1 1406247 1407311 R AWJ20_439 complement(<1406247..>1407311) Sugiyamaella lignohabitans 30036516 AWJ20_440 mRNA SLA2 NC_031672.1 1409379 1412549 D AWJ20_440 <1409379..>1412549 Sugiyamaella lignohabitans 30036528 AWJ20_441 mRNA APN2 NC_031672.1 1414570 1416462 R AWJ20_441 complement(<1414570..>1416462) Sugiyamaella lignohabitans 30036539 AWJ20_442 mRNA pep3 NC_031672.1 1416894 1419995 R AWJ20_442 complement(<1416894..>1419995) Sugiyamaella lignohabitans 30036550 AWJ20_443 mRNA MSS51 NC_031672.1 1422274 1423596 D AWJ20_443 <1422274..>1423596 Sugiyamaella lignohabitans 30036561 AWJ20_444 mRNA SQT1 NC_031672.1 1428273 1429601 D AWJ20_444 <1428273..>1429601 Sugiyamaella lignohabitans 30036572 AWJ20_445 mRNA RIB5 NC_031672.1 1430334 1432491 R AWJ20_445 complement(join(<1430334..1431034,1432374..>1432491)) Sugiyamaella lignohabitans 30036583 AWJ20_446 mRNA AWJ20_446 NC_031672.1 1430530 1431138 D AWJ20_446 <1430530..>1431138 Sugiyamaella lignohabitans 30036594 AWJ20_447 mRNA AWJ20_447 NC_031672.1 1441797 1443305 D AWJ20_447 <1441797..>1443305 Sugiyamaella lignohabitans 30036605 AWJ20_448 mRNA AWJ20_448 NC_031672.1 1444045 1445328 D AWJ20_448 <1444045..>1445328 Sugiyamaella lignohabitans 30036616 AWJ20_449 mRNA NOP13 NC_031672.1 1445761 1446945 D AWJ20_449 <1445761..>1446945 Sugiyamaella lignohabitans 30036627 AWJ20_450 mRNA AWJ20_450 NC_031672.1 1447096 1450629 R AWJ20_450 complement(<1447096..>1450629) Sugiyamaella lignohabitans 30036639 AWJ20_451 mRNA GLY1 NC_031672.1 1451958 1452986 D AWJ20_451 <1451958..>1452986 Sugiyamaella lignohabitans 30036650 AWJ20_452 mRNA AWJ20_452 NC_031672.1 1455254 1455754 R AWJ20_452 complement(<1455254..>1455754) Sugiyamaella lignohabitans 30036661 AWJ20_453 mRNA MDM12 NC_031672.1 1457087 1458373 D AWJ20_453 <1457087..>1458373 Sugiyamaella lignohabitans 30036672 AWJ20_455 mRNA AWJ20_455 NC_031672.1 1459089 1460003 D AWJ20_455 <1459089..>1460003 Sugiyamaella lignohabitans 30036694 AWJ20_459 mRNA AWJ20_459 NC_031672.1 1464272 1465789 D AWJ20_459 join(<1464272..1464415,1464809..>1465789) Sugiyamaella lignohabitans 30036738 AWJ20_460 mRNA URA6 NC_031672.1 1467236 1468231 D AWJ20_460 <1467236..>1468231 Sugiyamaella lignohabitans 30036750 AWJ20_461 mRNA SNU23 NC_031672.1 1469487 1470095 R AWJ20_461 complement(<1469487..>1470095) Sugiyamaella lignohabitans 30036761 AWJ20_462 mRNA CMK2 NC_031672.1 1471508 1472740 R AWJ20_462 complement(<1471508..>1472740) Sugiyamaella lignohabitans 30036772 AWJ20_463 mRNA DBP10 NC_031672.1 1474171 1477122 D AWJ20_463 <1474171..>1477122 Sugiyamaella lignohabitans 30036783 AWJ20_464 mRNA AWJ20_464 NC_031672.1 1478034 1478756 D AWJ20_464 <1478034..>1478756 Sugiyamaella lignohabitans 30036794 AWJ20_465 mRNA RPN9 NC_031672.1 1479618 1480676 R AWJ20_465 complement(<1479618..>1480676) Sugiyamaella lignohabitans 30036805 AWJ20_466 mRNA AWJ20_466 NC_031672.1 1481780 1482940 D AWJ20_466 <1481780..>1482940 Sugiyamaella lignohabitans 30036816 AWJ20_467 mRNA HTD2 NC_031672.1 1483081 1484094 R AWJ20_467 complement(<1483081..>1484094) Sugiyamaella lignohabitans 30036826 AWJ20_468 mRNA RPF1 NC_031672.1 1484516 1485406 D AWJ20_468 <1484516..>1485406 Sugiyamaella lignohabitans 30036837 AWJ20_470 mRNA CYM1 NC_031672.1 1486328 1489417 R AWJ20_470 complement(<1486328..>1489417) Sugiyamaella lignohabitans 30036860 AWJ20_471 mRNA MSN5 NC_031672.1 1491948 1495244 D AWJ20_471 <1491948..>1495244 Sugiyamaella lignohabitans 30036871 AWJ20_472 mRNA NCP1 NC_031672.1 1495477 1497612 R AWJ20_472 complement(<1495477..>1497612) Sugiyamaella lignohabitans 30036882 AWJ20_473 mRNA AWJ20_473 NC_031672.1 1502673 1506145 D AWJ20_473 join(<1502673..1502766,1502964..>1506145) Sugiyamaella lignohabitans 30036893 AWJ20_474 mRNA AWJ20_474 NC_031672.1 1506718 1508040 D AWJ20_474 <1506718..>1508040 Sugiyamaella lignohabitans 30036904 AWJ20_475 mRNA RAD4 NC_031672.1 1508296 1510590 D AWJ20_475 <1508296..>1510590 Sugiyamaella lignohabitans 30036915 AWJ20_476 mRNA GPI11 NC_031672.1 1510799 1511644 R AWJ20_476 complement(<1510799..>1511644) Sugiyamaella lignohabitans 30036926 AWJ20_477 mRNA CFT1 NC_031672.1 1512277 1515195 D AWJ20_477 <1512277..>1515195 Sugiyamaella lignohabitans 30036937 AWJ20_478 mRNA CFT1 NC_031672.1 1515513 1517081 D AWJ20_478 <1515513..>1517081 Sugiyamaella lignohabitans 30036948 AWJ20_479 mRNA MKT1 NC_031672.1 1517294 1519732 R AWJ20_479 complement(<1517294..>1519732) Sugiyamaella lignohabitans 30036959 AWJ20_480 mRNA AWJ20_480 NC_031672.1 1520037 1521020 R AWJ20_480 complement(<1520037..>1521020) Sugiyamaella lignohabitans 30036971 AWJ20_481 mRNA OAC1 NC_031672.1 1522927 1523742 D AWJ20_481 <1522927..>1523742 Sugiyamaella lignohabitans 30036982 AWJ20_482 mRNA MUB1 NC_031672.1 1525246 1528377 R AWJ20_482 complement(<1525246..>1528377) Sugiyamaella lignohabitans 30036993 AWJ20_483 mRNA AWJ20_483 NC_031672.1 1531667 1532677 D AWJ20_483 <1531667..>1532677 Sugiyamaella lignohabitans 30037004 AWJ20_484 mRNA HKR1 NC_031672.1 1537930 1542065 D AWJ20_484 join(<1537930..1540471,1540591..>1542065) Sugiyamaella lignohabitans 30037015 AWJ20_485 mRNA AWJ20_485 NC_031672.1 1538145 1538846 R AWJ20_485 complement(<1538145..>1538846) Sugiyamaella lignohabitans 30037026 AWJ20_486 mRNA AWJ20_486 NC_031672.1 1539309 1539716 R AWJ20_486 complement(<1539309..>1539716) Sugiyamaella lignohabitans 30037037 AWJ20_487 mRNA BGL2 NC_031672.1 1543961 1545406 D AWJ20_487 <1543961..>1545406 Sugiyamaella lignohabitans 30037048 AWJ20_488 mRNA AWJ20_488 NC_031672.1 1547014 1549896 D AWJ20_488 <1547014..>1549896 Sugiyamaella lignohabitans 30037059 AWJ20_489 mRNA AWJ20_489 NC_031672.1 1550075 1551514 R AWJ20_489 complement(<1550075..>1551514) Sugiyamaella lignohabitans 30037070 AWJ20_490 mRNA PPN1 NC_031672.1 1552000 1553949 R AWJ20_490 complement(<1552000..>1553949) Sugiyamaella lignohabitans 30037082 AWJ20_491 mRNA AWJ20_491 NC_031672.1 1554174 1555382 R AWJ20_491 complement(join(<1554174..1554831,1555270..>1555382)) Sugiyamaella lignohabitans 30037093 AWJ20_492 mRNA AWJ20_492 NC_031672.1 1555990 1556358 R AWJ20_492 complement(<1555990..>1556358) Sugiyamaella lignohabitans 30037104 AWJ20_493 mRNA STE6 NC_031672.1 1556933 1560865 R AWJ20_493 complement(<1556933..>1560865) Sugiyamaella lignohabitans 30037115 AWJ20_494 mRNA AWJ20_494 NC_031672.1 1561423 1561788 R AWJ20_494 complement(<1561423..>1561788) Sugiyamaella lignohabitans 30037126 AWJ20_495 mRNA SNF3 NC_031672.1 1568109 1569869 D AWJ20_495 <1568109..>1569869 Sugiyamaella lignohabitans 30037137 AWJ20_496 mRNA RAD16 NC_031672.1 1570273 1573017 D AWJ20_496 <1570273..>1573017 Sugiyamaella lignohabitans 30037148 AWJ20_497 mRNA YCF1 NC_031672.1 1573213 1576380 R AWJ20_497 complement(<1573213..>1576380) Sugiyamaella lignohabitans 30037159 AWJ20_498 mRNA STE4 NC_031672.1 1579947 1581038 D AWJ20_498 <1579947..>1581038 Sugiyamaella lignohabitans 30037170 AWJ20_499 mRNA AVO1 NC_031672.1 1582228 1585509 R AWJ20_499 complement(<1582228..>1585509) Sugiyamaella lignohabitans 30037181 AWJ20_500 mRNA AGP3 NC_031672.1 1586375 1587148 R AWJ20_500 complement(<1586375..>1587148) Sugiyamaella lignohabitans 30037194 AWJ20_501 mRNA AGP3 NC_031672.1 1587373 1588071 R AWJ20_501 complement(<1587373..>1588071) Sugiyamaella lignohabitans 30037205 AWJ20_502 mRNA ORM1 NC_031672.1 1591352 1591900 D AWJ20_502 <1591352..>1591900 Sugiyamaella lignohabitans 30037216 AWJ20_503 mRNA TSR3 NC_031672.1 1592571 1593521 D AWJ20_503 <1592571..>1593521 Sugiyamaella lignohabitans 30037227 AWJ20_504 mRNA SRO7 NC_031672.1 1594490 1596877 R AWJ20_504 complement(<1594490..>1596877) Sugiyamaella lignohabitans 30037238 AWJ20_505 mRNA DNL4 NC_031672.1 1597359 1598723 D AWJ20_505 <1597359..>1598723 Sugiyamaella lignohabitans 30037249 AWJ20_506 mRNA DNL4 NC_031672.1 1599004 1600296 D AWJ20_506 <1599004..>1600296 Sugiyamaella lignohabitans 30037260 AWJ20_507 mRNA SEA4 NC_031672.1 1600359 1602584 R AWJ20_507 complement(<1600359..>1602584) Sugiyamaella lignohabitans 30037271 AWJ20_508 mRNA AWJ20_508 NC_031672.1 1607474 1609489 D AWJ20_508 <1607474..>1609489 Sugiyamaella lignohabitans 30037282 AWJ20_509 mRNA VPS8 NC_031672.1 1609577 1612573 D AWJ20_509 <1609577..>1612573 Sugiyamaella lignohabitans 30037293 AWJ20_510 mRNA AWJ20_510 NC_031672.1 1612861 1614036 R AWJ20_510 complement(<1612861..>1614036) Sugiyamaella lignohabitans 30037305 AWJ20_511 mRNA MRT4 NC_031672.1 1614475 1615026 R AWJ20_511 complement(<1614475..>1615026) Sugiyamaella lignohabitans 30037316 AWJ20_512 mRNA AWJ20_512 NC_031672.1 1615789 1616286 D AWJ20_512 <1615789..>1616286 Sugiyamaella lignohabitans 30037327 AWJ20_513 mRNA FUR1 NC_031672.1 1616754 1617155 R AWJ20_513 complement(<1616754..>1617155) Sugiyamaella lignohabitans 30037338 AWJ20_514 mRNA NST1 NC_031672.1 1617998 1622395 R AWJ20_514 complement(<1617998..>1622395) Sugiyamaella lignohabitans 30037349 AWJ20_515 mRNA SGS1 NC_031672.1 1627969 1631133 R AWJ20_515 complement(<1627969..>1631133) Sugiyamaella lignohabitans 30037360 AWJ20_516 mRNA ALD4 NC_031672.1 1635432 1637075 R AWJ20_516 complement(<1635432..>1637075) Sugiyamaella lignohabitans 30037371 AWJ20_517 mRNA AWJ20_517 NC_031672.1 1638052 1638807 R AWJ20_517 complement(<1638052..>1638807) Sugiyamaella lignohabitans 30037382 AWJ20_518 mRNA ILV2 NC_031672.1 1641288 1643141 R AWJ20_518 complement(<1641288..>1643141) Sugiyamaella lignohabitans 30037393 AWJ20_519 mRNA AWJ20_519 NC_031672.1 1642528 1642827 D AWJ20_519 <1642528..>1642827 Sugiyamaella lignohabitans 30037404 AWJ20_520 mRNA PRP4 NC_031672.1 1652487 1654103 R AWJ20_520 complement(<1652487..>1654103) Sugiyamaella lignohabitans 30037416 AWJ20_521 mRNA HDA3 NC_031672.1 1655819 1658062 R AWJ20_521 complement(<1655819..>1658062) Sugiyamaella lignohabitans 30037427 AWJ20_522 mRNA AOS1 NC_031672.1 1658919 1659917 D AWJ20_522 <1658919..>1659917 Sugiyamaella lignohabitans 30037438 AWJ20_523 mRNA SEC23 NC_031672.1 1660167 1661954 R AWJ20_523 complement(<1660167..>1661954) Sugiyamaella lignohabitans 30037449 AWJ20_524 mRNA GEA2 NC_031672.1 1668738 1671815 D AWJ20_524 <1668738..>1671815 Sugiyamaella lignohabitans 30037460 AWJ20_525 mRNA AWJ20_525 NC_031672.1 1672782 1673459 D AWJ20_525 <1672782..>1673459 Sugiyamaella lignohabitans 30037471 AWJ20_526 mRNA AWJ20_526 NC_031672.1 1680377 1683608 D AWJ20_526 join(<1680377..1680432,1681436..>1683608) Sugiyamaella lignohabitans 30037482 AWJ20_527 mRNA RPS6A NC_031672.1 1684978 1685601 D AWJ20_527 <1684978..>1685601 Sugiyamaella lignohabitans 30037493 AWJ20_528 mRNA PEF1 NC_031672.1 1687964 1688881 D AWJ20_528 <1687964..>1688881 Sugiyamaella lignohabitans 30037504 AWJ20_529 mRNA AWJ20_529 NC_031672.1 1692627 1693673 R AWJ20_529 complement(<1692627..>1693673) Sugiyamaella lignohabitans 30037515 AWJ20_530 mRNA AWJ20_530 NC_031672.1 1695052 1695834 R AWJ20_530 complement(<1695052..>1695834) Sugiyamaella lignohabitans 30037526 AWJ20_531 mRNA MBA1 NC_031672.1 1698515 1699027 D AWJ20_531 <1698515..>1699027 Sugiyamaella lignohabitans 30037537 AWJ20_532 mRNA CDC12 NC_031672.1 1700227 1701696 D AWJ20_532 <1700227..>1701696 Sugiyamaella lignohabitans 30037548 AWJ20_533 mRNA SOK2 NC_031672.1 1709731 1711155 D AWJ20_533 <1709731..>1711155 Sugiyamaella lignohabitans 30037559 AWJ20_534 mRNA HIR3 NC_031672.1 1713513 1718273 R AWJ20_534 complement(<1713513..>1718273) Sugiyamaella lignohabitans 30037570 AWJ20_535 mRNA AWJ20_535 NC_031672.1 1719924 1721315 D AWJ20_535 <1719924..>1721315 Sugiyamaella lignohabitans 30037578 AWJ20_536 mRNA PPX1 NC_031672.1 1721410 1721868 R AWJ20_536 complement(<1721410..>1721868) Sugiyamaella lignohabitans 30037579 AWJ20_537 mRNA HOM6 NC_031672.1 1722983 1724122 D AWJ20_537 join(<1722983..1723010,1723074..>1724122) Sugiyamaella lignohabitans 30037580 AWJ20_538 mRNA YPD1 NC_031672.1 1727382 1728041 D AWJ20_538 <1727382..>1728041 Sugiyamaella lignohabitans 30037581 AWJ20_539 mRNA MGS1 NC_031672.1 1728237 1730078 R AWJ20_539 complement(<1728237..>1730078) Sugiyamaella lignohabitans 30037582 AWJ20_540 mRNA IML1 NC_031672.1 1731318 1735556 D AWJ20_540 <1731318..>1735556 Sugiyamaella lignohabitans 30037584 AWJ20_541 mRNA AWJ20_541 NC_031672.1 1738943 1740169 D AWJ20_541 <1738943..>1740169 Sugiyamaella lignohabitans 30037585 AWJ20_542 mRNA ELP3 NC_031672.1 1741108 1742769 R AWJ20_542 complement(<1741108..>1742769) Sugiyamaella lignohabitans 30037586 AWJ20_543 mRNA AWJ20_543 NC_031672.1 1743554 1745607 R AWJ20_543 complement(join(<1743554..1744704,1745544..>1745607)) Sugiyamaella lignohabitans 30037587 AWJ20_544 mRNA SEC16 NC_031672.1 1743651 1748306 D AWJ20_544 <1743651..>1748306 Sugiyamaella lignohabitans 30037588 AWJ20_545 mRNA SEC16 NC_031672.1 1748456 1750846 D AWJ20_545 <1748456..>1750846 Sugiyamaella lignohabitans 30037589 AWJ20_546 mRNA AWJ20_546 NC_031672.1 1757997 1760285 D AWJ20_546 <1757997..>1760285 Sugiyamaella lignohabitans 30037590 AWJ20_547 mRNA RPC40 NC_031672.1 1760684 1761508 R AWJ20_547 complement(<1760684..>1761508) Sugiyamaella lignohabitans 30037591 AWJ20_548 mRNA TXL1 NC_031672.1 1763064 1763807 D AWJ20_548 <1763064..>1763807 Sugiyamaella lignohabitans 30037592 AWJ20_549 mRNA TIF1 NC_031672.1 1764309 1765496 D AWJ20_549 <1764309..>1765496 Sugiyamaella lignohabitans 30037593 AWJ20_550 mRNA AWJ20_550 NC_031672.1 1764549 1765635 R AWJ20_550 complement(join(<1764549..1765492,1765587..>1765635)) Sugiyamaella lignohabitans 30037595 AWJ20_551 mRNA APE4 NC_031672.1 1766219 1767682 D AWJ20_551 <1766219..>1767682 Sugiyamaella lignohabitans 30037596 AWJ20_552 mRNA AWJ20_552 NC_031672.1 1767911 1768222 R AWJ20_552 complement(<1767911..>1768222) Sugiyamaella lignohabitans 30037597 AWJ20_553 mRNA AWJ20_553 NC_031672.1 1769120 1770019 R AWJ20_553 complement(<1769120..>1770019) Sugiyamaella lignohabitans 30037598 AWJ20_554 mRNA BNI1 NC_031672.1 1771012 1776051 R AWJ20_554 complement(<1771012..>1776051) Sugiyamaella lignohabitans 30037599 AWJ20_555 mRNA YEF1 NC_031672.1 1780880 1781902 R AWJ20_555 complement(<1780880..>1781902) Sugiyamaella lignohabitans 30037600 AWJ20_556 mRNA LAS1 NC_031672.1 1788790 1790214 D AWJ20_556 <1788790..>1790214 Sugiyamaella lignohabitans 30037601 AWJ20_557 mRNA GAL3 NC_031672.1 1790437 1791981 R AWJ20_557 complement(<1790437..>1791981) Sugiyamaella lignohabitans 30037602 AWJ20_558 mRNA LDB19 NC_031672.1 1792376 1793926 R AWJ20_558 complement(<1792376..>1793926) Sugiyamaella lignohabitans 30037603 AWJ20_559 mRNA MRPL10 NC_031672.1 1797749 1798618 D AWJ20_559 <1797749..>1798618 Sugiyamaella lignohabitans 30037604 AWJ20_560 mRNA CPR2 NC_031672.1 1798829 1800352 R AWJ20_560 complement(<1798829..>1800352) Sugiyamaella lignohabitans 30037606 AWJ20_561 mRNA AWJ20_561 NC_031672.1 1806273 1806701 R AWJ20_561 complement(<1806273..>1806701) Sugiyamaella lignohabitans 30037607 AWJ20_562 mRNA NTO1 NC_031672.1 1807820 1810699 D AWJ20_562 <1807820..>1810699 Sugiyamaella lignohabitans 30037608 AWJ20_563 mRNA AWJ20_563 NC_031672.1 1812874 1814268 R AWJ20_563 complement(<1812874..>1814268) Sugiyamaella lignohabitans 30037609 AWJ20_564 mRNA PEX14 NC_031672.1 1815400 1816440 R AWJ20_564 complement(<1815400..>1816440) Sugiyamaella lignohabitans 30037610 AWJ20_566 mRNA TFC6 NC_031672.1 1817389 1819566 R AWJ20_566 complement(<1817389..>1819566) Sugiyamaella lignohabitans 30037612 AWJ20_567 mRNA UBA4 NC_031672.1 1820270 1821529 R AWJ20_567 complement(<1820270..>1821529) Sugiyamaella lignohabitans 30037613 AWJ20_568 mRNA AWJ20_568 NC_031672.1 1823238 1824650 D AWJ20_568 <1823238..>1824650 Sugiyamaella lignohabitans 30037614 AWJ20_569 mRNA AWJ20_569 NC_031672.1 1826581 1827948 R AWJ20_569 complement(<1826581..>1827948) Sugiyamaella lignohabitans 30037615 AWJ20_570 mRNA PRP21 NC_031672.1 1829659 1831263 D AWJ20_570 <1829659..>1831263 Sugiyamaella lignohabitans 30037617 AWJ20_571 mRNA SGT2 NC_031672.1 1831947 1833077 R AWJ20_571 complement(<1831947..>1833077) Sugiyamaella lignohabitans 30037618 AWJ20_572 mRNA AWJ20_572 NC_031672.1 1833829 1834542 R AWJ20_572 complement(<1833829..>1834542) Sugiyamaella lignohabitans 30037619 AWJ20_573 mRNA AWJ20_573 NC_031672.1 1835870 1838860 D AWJ20_573 <1835870..>1838860 Sugiyamaella lignohabitans 30037620 AWJ20_574 mRNA AWJ20_574 NC_031672.1 1838956 1840209 D AWJ20_574 <1838956..>1840209 Sugiyamaella lignohabitans 30037621 AWJ20_575 mRNA AWJ20_575 NC_031672.1 1840385 1841143 R AWJ20_575 complement(<1840385..>1841143) Sugiyamaella lignohabitans 30037622 AWJ20_576 mRNA AWJ20_576 NC_031672.1 1842115 1842945 R AWJ20_576 complement(<1842115..>1842945) Sugiyamaella lignohabitans 30037623 AWJ20_577 mRNA RRN3 NC_031672.1 1843590 1845671 R AWJ20_577 complement(<1843590..>1845671) Sugiyamaella lignohabitans 30037624 AWJ20_578 mRNA yip11 NC_031672.1 1847161 1848198 R AWJ20_578 complement(<1847161..>1848198) Sugiyamaella lignohabitans 30037625 AWJ20_579 mRNA AWJ20_579 NC_031672.1 1848868 1850061 D AWJ20_579 <1848868..>1850061 Sugiyamaella lignohabitans 30037626 AWJ20_580 mRNA AWJ20_580 NC_031672.1 1851571 1852786 R AWJ20_580 complement(join(<1851571..1852541,1852732..>1852786)) Sugiyamaella lignohabitans 30037628 AWJ20_581 mRNA APM4 NC_031672.1 1855818 1860422 D AWJ20_581 join(<1855818..1856573,1858932..>1860422) Sugiyamaella lignohabitans 30037629 AWJ20_582 mRNA AWJ20_582 NC_031672.1 1861302 1862462 R AWJ20_582 complement(<1861302..>1862462) Sugiyamaella lignohabitans 30037630 AWJ20_583 mRNA SFM1 NC_031672.1 1862866 1863294 D AWJ20_583 <1862866..>1863294 Sugiyamaella lignohabitans 30037631 AWJ20_584 mRNA AWJ20_584 NC_031672.1 1863730 1866396 R AWJ20_584 complement(<1863730..>1866396) Sugiyamaella lignohabitans 30037632 AWJ20_585 mRNA AWJ20_585 NC_031672.1 1869674 1872283 D AWJ20_585 <1869674..>1872283 Sugiyamaella lignohabitans 30037633 AWJ20_586 mRNA AWJ20_586 NC_031672.1 1873903 1876632 D AWJ20_586 <1873903..>1876632 Sugiyamaella lignohabitans 30037634 AWJ20_587 mRNA AWJ20_587 NC_031672.1 1876808 1877710 D AWJ20_587 <1876808..>1877710 Sugiyamaella lignohabitans 30037635 AWJ20_588 mRNA AWJ20_588 NC_031672.1 1878820 1879776 R AWJ20_588 complement(<1878820..>1879776) Sugiyamaella lignohabitans 30037636 AWJ20_589 mRNA AWJ20_589 NC_031672.1 1881267 1882013 R AWJ20_589 complement(<1881267..>1882013) Sugiyamaella lignohabitans 30037637 AWJ20_590 mRNA AWJ20_590 NC_031672.1 1884606 1885838 D AWJ20_590 <1884606..>1885838 Sugiyamaella lignohabitans 30037639 AWJ20_591 mRNA AWJ20_591 NC_031672.1 1894019 1896628 R AWJ20_591 complement(<1894019..>1896628) Sugiyamaella lignohabitans 30037640 AWJ20_592 mRNA AWJ20_592 NC_031672.1 1900245 1903091 R AWJ20_592 complement(<1900245..>1903091) Sugiyamaella lignohabitans 30037641 AWJ20_593 mRNA AWJ20_593 NC_031672.1 1905734 1906330 R AWJ20_593 complement(<1905734..>1906330) Sugiyamaella lignohabitans 30037642 AWJ20_594 mRNA AWJ20_594 NC_031672.1 1906668 1907312 R AWJ20_594 complement(<1906668..>1907312) Sugiyamaella lignohabitans 30037643 AWJ20_595 mRNA AWJ20_595 NC_031672.1 1910172 1911719 D AWJ20_595 <1910172..>1911719 Sugiyamaella lignohabitans 30037644 AWJ20_596 mRNA AWJ20_596 NC_031672.1 1913093 1913791 R AWJ20_596 complement(<1913093..>1913791) Sugiyamaella lignohabitans 30037645 AWJ20_597 mRNA EFT1 NC_031672.1 1915894 1918386 D AWJ20_597 <1915894..>1918386 Sugiyamaella lignohabitans 30037646 AWJ20_598 mRNA FDH1 NC_031672.1 1918881 1919087 R AWJ20_598 complement(<1918881..>1919087) Sugiyamaella lignohabitans 30037647 AWJ20_599 mRNA FDH1 NC_031672.1 1919133 1920095 R AWJ20_599 complement(<1919133..>1920095) Sugiyamaella lignohabitans 30037648 AWJ20_600 mRNA RGA1 NC_031672.1 1921083 1924895 R AWJ20_600 complement(<1921083..>1924895) Sugiyamaella lignohabitans 30037651 AWJ20_601 mRNA AWJ20_601 NC_031672.1 1930481 1932868 R AWJ20_601 complement(<1930481..>1932868) Sugiyamaella lignohabitans 30037652 AWJ20_602 mRNA AWJ20_602 NC_031672.1 1934537 1937488 D AWJ20_602 <1934537..>1937488 Sugiyamaella lignohabitans 30037653 AWJ20_603 mRNA AWJ20_603 NC_031672.1 1939631 1942555 R AWJ20_603 complement(<1939631..>1942555) Sugiyamaella lignohabitans 30037654 AWJ20_604 mRNA ARH1 NC_031672.1 1944828 1946222 R AWJ20_604 complement(<1944828..>1946222) Sugiyamaella lignohabitans 30037655 AWJ20_605 mRNA pcf1 NC_031672.1 1948121 1951831 D AWJ20_605 <1948121..>1951831 Sugiyamaella lignohabitans 30037656 AWJ20_606 mRNA HXT11 NC_031672.1 1956560 1957654 D AWJ20_606 <1956560..>1957654 Sugiyamaella lignohabitans 30037657 AWJ20_607 mRNA AWJ20_607 NC_031672.1 1959365 1960546 D AWJ20_607 join(<1959365..1959592,1960460..>1960546) Sugiyamaella lignohabitans 30037658 AWJ20_608 mRNA SET1 NC_031672.1 1961379 1965563 D AWJ20_608 <1961379..>1965563 Sugiyamaella lignohabitans 30037659 AWJ20_609 mRNA MSH1 NC_031672.1 1966675 1969131 D AWJ20_609 <1966675..>1969131 Sugiyamaella lignohabitans 30037660 AWJ20_610 mRNA NAF1 NC_031672.1 1969227 1970924 R AWJ20_610 complement(<1969227..>1970924) Sugiyamaella lignohabitans 30037662 AWJ20_611 mRNA AWJ20_611 NC_031672.1 1973604 1974368 R AWJ20_611 complement(<1973604..>1974368) Sugiyamaella lignohabitans 30037663 AWJ20_612 mRNA YPS3 NC_031672.1 1975351 1976805 D AWJ20_612 <1975351..>1976805 Sugiyamaella lignohabitans 30037664 AWJ20_614 mRNA AWJ20_614 NC_031672.1 1977448 1978797 R AWJ20_614 complement(<1977448..>1978797) Sugiyamaella lignohabitans 30037666 AWJ20_615 mRNA AWJ20_615 NC_031672.1 1984741 1986804 R AWJ20_615 complement(<1984741..>1986804) Sugiyamaella lignohabitans 30037667 AWJ20_616 mRNA AWJ20_616 NC_031672.1 1987623 1988636 D AWJ20_616 <1987623..>1988636 Sugiyamaella lignohabitans 30037668 AWJ20_617 mRNA MRS3 NC_031672.1 1989064 1990314 R AWJ20_617 complement(<1989064..>1990314) Sugiyamaella lignohabitans 30037669 AWJ20_618 mRNA KRE33 NC_031672.1 1992331 1995444 R AWJ20_618 complement(<1992331..>1995444) Sugiyamaella lignohabitans 30037670 AWJ20_619 mRNA AWJ20_619 NC_031672.1 1996918 1997688 D AWJ20_619 <1996918..>1997688 Sugiyamaella lignohabitans 30037671 AWJ20_620 mRNA PGU1 NC_031672.1 1998912 2000132 D AWJ20_620 <1998912..>2000132 Sugiyamaella lignohabitans 30037673 AWJ20_621 mRNA SWT1 NC_031672.1 2000373 2001728 R AWJ20_621 complement(<2000373..>2001728) Sugiyamaella lignohabitans 30037674 AWJ20_622 mRNA AWJ20_622 NC_031672.1 2002185 2004992 R AWJ20_622 complement(<2002185..>2004992) Sugiyamaella lignohabitans 30037675 AWJ20_623 mRNA AWJ20_623 NC_031672.1 2007235 2007858 D AWJ20_623 <2007235..>2007858 Sugiyamaella lignohabitans 30037676 AWJ20_624 mRNA RAD4 NC_031672.1 2008079 2011042 R AWJ20_624 complement(<2008079..>2011042) Sugiyamaella lignohabitans 30037677 AWJ20_625 mRNA ROD1 NC_031672.1 2012986 2014929 R AWJ20_625 complement(<2012986..>2014929) Sugiyamaella lignohabitans 30037678 AWJ20_626 mRNA ERC1 NC_031672.1 2021238 2023097 D AWJ20_626 <2021238..>2023097 Sugiyamaella lignohabitans 30037679 AWJ20_627 mRNA PEX12 NC_031672.1 2023352 2024557 R AWJ20_627 complement(<2023352..>2024557) Sugiyamaella lignohabitans 30037680 AWJ20_628 mRNA AWJ20_628 NC_031672.1 2025075 2026526 D AWJ20_628 <2025075..>2026526 Sugiyamaella lignohabitans 30037681 AWJ20_629 mRNA GAS4 NC_031672.1 2026600 2027628 R AWJ20_629 complement(<2026600..>2027628) Sugiyamaella lignohabitans 30037682 AWJ20_630 mRNA SPS19 NC_031672.1 2028631 2029407 R AWJ20_630 complement(<2028631..>2029407) Sugiyamaella lignohabitans 30037684 AWJ20_631 mRNA XYL2 NC_031672.1 2029751 2030872 D AWJ20_631 <2029751..>2030872 Sugiyamaella lignohabitans 30037685 AWJ20_632 mRNA AWJ20_632 NC_031672.1 2031763 2033307 R AWJ20_632 complement(<2031763..>2033307) Sugiyamaella lignohabitans 30037686 AWJ20_633 mRNA RBG1 NC_031672.1 2034422 2035489 R AWJ20_633 complement(<2034422..>2035489) Sugiyamaella lignohabitans 30037687 AWJ20_634 mRNA FUN12 NC_031672.1 2036645 2039749 D AWJ20_634 <2036645..>2039749 Sugiyamaella lignohabitans 30037688 AWJ20_635 mRNA AWJ20_635 NC_031672.1 2038825 2039091 R AWJ20_635 complement(<2038825..>2039091) Sugiyamaella lignohabitans 30037689 AWJ20_636 mRNA IDI1 NC_031672.1 2040602 2041189 R AWJ20_636 complement(<2040602..>2041189) Sugiyamaella lignohabitans 30037690 AWJ20_637 mRNA AWJ20_637 NC_031672.1 2041844 2045182 R AWJ20_637 complement(<2041844..>2045182) Sugiyamaella lignohabitans 30037691 AWJ20_639 mRNA DPB2 NC_031672.1 2047056 2049074 D AWJ20_639 <2047056..>2049074 Sugiyamaella lignohabitans 30037693 AWJ20_640 mRNA BET2 NC_031672.1 2049292 2049954 R AWJ20_640 complement(<2049292..>2049954) Sugiyamaella lignohabitans 30037695 AWJ20_641 mRNA SNF12 NC_031672.1 2050695 2051498 R AWJ20_641 complement(<2050695..>2051498) Sugiyamaella lignohabitans 30037696 AWJ20_642 mRNA SNF12 NC_031672.1 2051677 2052225 R AWJ20_642 complement(<2051677..>2052225) Sugiyamaella lignohabitans 30037697 AWJ20_643 mRNA MCM5 NC_031672.1 2052551 2054752 R AWJ20_643 complement(<2052551..>2054752) Sugiyamaella lignohabitans 30037698 AWJ20_644 mRNA AWJ20_644 NC_031672.1 2055488 2057122 D AWJ20_644 <2055488..>2057122 Sugiyamaella lignohabitans 30037699 AWJ20_645 mRNA AWJ20_645 NC_031672.1 2057528 2059534 R AWJ20_645 complement(<2057528..>2059534) Sugiyamaella lignohabitans 30037700 AWJ20_647 mRNA TGL3 NC_031672.1 2066221 2067747 D AWJ20_647 <2066221..>2067747 Sugiyamaella lignohabitans 30037702 AWJ20_648 mRNA ELP6 NC_031672.1 2067945 2068733 R AWJ20_648 complement(<2067945..>2068733) Sugiyamaella lignohabitans 30037703 AWJ20_649 mRNA ZUO1 NC_031672.1 2069315 2070607 D AWJ20_649 <2069315..>2070607 Sugiyamaella lignohabitans 30037704 AWJ20_650 mRNA YND1 NC_031672.1 2073339 2075477 D AWJ20_650 <2073339..>2075477 Sugiyamaella lignohabitans 30037706 AWJ20_651 mRNA BSD2 NC_031672.1 2077590 2078980 R AWJ20_651 complement(join(<2077590..2078777,2078957..>2078980)) Sugiyamaella lignohabitans 30037707 AWJ20_652 mRNA HOL1 NC_031672.1 2080467 2082809 D AWJ20_652 <2080467..>2082809 Sugiyamaella lignohabitans 30037708 AWJ20_653 mRNA BNA2 NC_031672.1 2083806 2085335 D AWJ20_653 <2083806..>2085335 Sugiyamaella lignohabitans 30037709 AWJ20_654 mRNA AWJ20_654 NC_031672.1 2086837 2088876 R AWJ20_654 complement(<2086837..>2088876) Sugiyamaella lignohabitans 30037710 AWJ20_655 mRNA AWJ20_655 NC_031672.1 2093023 2093823 D AWJ20_655 <2093023..>2093823 Sugiyamaella lignohabitans 30037711 AWJ20_656 mRNA AWJ20_656 NC_031672.1 2094120 2094557 D AWJ20_656 <2094120..>2094557 Sugiyamaella lignohabitans 30037712 AWJ20_657 mRNA MAE1 NC_031672.1 2095817 2096539 D AWJ20_657 <2095817..>2096539 Sugiyamaella lignohabitans 30037713 AWJ20_658 mRNA MAE1 NC_031672.1 2096581 2097129 D AWJ20_658 <2096581..>2097129 Sugiyamaella lignohabitans 30037714 AWJ20_659 mRNA MAE1 NC_031672.1 2097197 2097502 D AWJ20_659 <2097197..>2097502 Sugiyamaella lignohabitans 30037715 AWJ20_660 mRNA TTI1 NC_031672.1 2097582 2100494 R AWJ20_660 complement(<2097582..>2100494) Sugiyamaella lignohabitans 30037717 AWJ20_661 mRNA TOA1 NC_031672.1 2101399 2102076 R AWJ20_661 complement(<2101399..>2102076) Sugiyamaella lignohabitans 30037718 AWJ20_662 mRNA FET3 NC_031672.1 2105069 2106928 R AWJ20_662 complement(<2105069..>2106928) Sugiyamaella lignohabitans 30037719 AWJ20_663 mRNA AWJ20_663 NC_031672.1 2106047 2106943 D AWJ20_663 <2106047..>2106943 Sugiyamaella lignohabitans 30037720 AWJ20_664 mRNA FTR1 NC_031672.1 2111550 2112638 D AWJ20_664 <2111550..>2112638 Sugiyamaella lignohabitans 30037721 AWJ20_665 mRNA AWJ20_665 NC_031672.1 2112897 2114027 R AWJ20_665 complement(<2112897..>2114027) Sugiyamaella lignohabitans 30037722 AWJ20_666 mRNA AWJ20_666 NC_031672.1 2115684 2116730 R AWJ20_666 complement(<2115684..>2116730) Sugiyamaella lignohabitans 30037723 AWJ20_667 mRNA RGR1 NC_031672.1 2116762 2118680 R AWJ20_667 complement(join(<2116762..2116795,2116855..>2118680)) Sugiyamaella lignohabitans 30037724 AWJ20_668 mRNA AWJ20_668 NC_031672.1 2120856 2122955 D AWJ20_668 <2120856..>2122955 Sugiyamaella lignohabitans 30037725 AWJ20_669 mRNA PRR1 NC_031672.1 2123346 2123882 D AWJ20_669 <2123346..>2123882 Sugiyamaella lignohabitans 30037726 AWJ20_670 mRNA YTH1 NC_031672.1 2124291 2124662 R AWJ20_670 complement(<2124291..>2124662) Sugiyamaella lignohabitans 30037728 AWJ20_671 mRNA AWJ20_671 NC_031672.1 2133101 2134204 R AWJ20_671 complement(<2133101..>2134204) Sugiyamaella lignohabitans 30037729 AWJ20_672 mRNA GZF3 NC_031672.1 2136087 2137976 D AWJ20_672 <2136087..>2137976 Sugiyamaella lignohabitans 30037730 AWJ20_673 mRNA AWJ20_673 NC_031672.1 2138376 2139812 R AWJ20_673 complement(<2138376..>2139812) Sugiyamaella lignohabitans 30037731 AWJ20_674 mRNA COG4 NC_031672.1 2140239 2142908 R AWJ20_674 complement(<2140239..>2142908) Sugiyamaella lignohabitans 30037732 AWJ20_675 mRNA ADE8 NC_031672.1 2143270 2143923 D AWJ20_675 <2143270..>2143923 Sugiyamaella lignohabitans 30037733 AWJ20_676 mRNA PUP1 NC_031672.1 2144192 2144986 R AWJ20_676 complement(<2144192..>2144986) Sugiyamaella lignohabitans 30037734 AWJ20_677 mRNA IKI3 NC_031672.1 2147693 2152083 R AWJ20_677 complement(join(<2147693..2151715,2151940..>2152083)) Sugiyamaella lignohabitans 30037735 AWJ20_678 mRNA RIX7 NC_031672.1 2153777 2156476 R AWJ20_678 complement(<2153777..>2156476) Sugiyamaella lignohabitans 30037736 AWJ20_679 mRNA VPS20 NC_031672.1 2157084 2157701 D AWJ20_679 <2157084..>2157701 Sugiyamaella lignohabitans 30037737 AWJ20_680 mRNA HEM2 NC_031672.1 2157926 2158828 R AWJ20_680 complement(<2157926..>2158828) Sugiyamaella lignohabitans 30037739 AWJ20_681 mRNA LSC2 NC_031672.1 2163985 2165289 D AWJ20_681 <2163985..>2165289 Sugiyamaella lignohabitans 30037740 AWJ20_682 mRNA AWJ20_682 NC_031672.1 2166069 2166404 D AWJ20_682 <2166069..>2166404 Sugiyamaella lignohabitans 30037741 AWJ20_683 mRNA GRC3 NC_031672.1 2168171 2170354 D AWJ20_683 <2168171..>2170354 Sugiyamaella lignohabitans 30037742 AWJ20_684 mRNA AWJ20_684 NC_031672.1 2172059 2172601 D AWJ20_684 <2172059..>2172601 Sugiyamaella lignohabitans 30037743 AWJ20_685 mRNA SFL1 NC_031672.1 2172845 2175229 R AWJ20_685 complement(<2172845..>2175229) Sugiyamaella lignohabitans 30037744 AWJ20_686 mRNA CYB2 NC_031672.1 2192339 2193463 R AWJ20_686 complement(<2192339..>2193463) Sugiyamaella lignohabitans 30037745 AWJ20_687 mRNA TPO3 NC_031672.1 2196663 2198492 R AWJ20_687 complement(<2196663..>2198492) Sugiyamaella lignohabitans 30037746 AWJ20_688 mRNA LSC1 NC_031672.1 2199598 2200644 R AWJ20_688 complement(<2199598..>2200644) Sugiyamaella lignohabitans 30037747 AWJ20_689 mRNA BRF1 NC_031672.1 2203200 2205263 D AWJ20_689 <2203200..>2205263 Sugiyamaella lignohabitans 30037748 AWJ20_690 mRNA AWJ20_690 NC_031672.1 2204273 2207196 R AWJ20_690 complement(join(<2204273..2204752,2206018..>2207196)) Sugiyamaella lignohabitans 30037750 AWJ20_691 mRNA CDC48 NC_031672.1 2208192 2208957 D AWJ20_691 join(<2208192..2208464,2208883..>2208957) Sugiyamaella lignohabitans 30037751 AWJ20_692 mRNA CDC48 NC_031672.1 2209079 2210863 D AWJ20_692 <2209079..>2210863 Sugiyamaella lignohabitans 30037752 AWJ20_693 mRNA MSS4 NC_031672.1 2212677 2214509 R AWJ20_693 complement(<2212677..>2214509) Sugiyamaella lignohabitans 30037753 AWJ20_694 mRNA PRP9 NC_031672.1 2216274 2218109 R AWJ20_694 complement(<2216274..>2218109) Sugiyamaella lignohabitans 30037754 AWJ20_695 mRNA TFG1 NC_031672.1 2223275 2225263 D AWJ20_695 <2223275..>2225263 Sugiyamaella lignohabitans 30037755 AWJ20_698 mRNA HNT1 NC_031672.1 2228732 2229091 D AWJ20_698 <2228732..>2229091 Sugiyamaella lignohabitans 30037758 AWJ20_699 mRNA NAT1 NC_031672.1 2229313 2231907 R AWJ20_699 complement(<2229313..>2231907) Sugiyamaella lignohabitans 30037759 AWJ20_700 mRNA RIB2 NC_031672.1 2237237 2238337 R AWJ20_700 complement(<2237237..>2238337) Sugiyamaella lignohabitans 30037762 AWJ20_701 mRNA PUS9 NC_031672.1 2238883 2239356 R AWJ20_701 complement(<2238883..>2239356) Sugiyamaella lignohabitans 30037763 AWJ20_702 mRNA SDA1 NC_031672.1 2239989 2242130 D AWJ20_702 <2239989..>2242130 Sugiyamaella lignohabitans 30037764 AWJ20_703 mRNA AWJ20_703 NC_031672.1 2242616 2242927 D AWJ20_703 <2242616..>2242927 Sugiyamaella lignohabitans 30037765 AWJ20_704 mRNA DBP8 NC_031672.1 2243040 2244383 R AWJ20_704 complement(<2243040..>2244383) Sugiyamaella lignohabitans 30037766 AWJ20_705 mRNA SKI6 NC_031672.1 2244740 2245285 R AWJ20_705 complement(<2244740..>2245285) Sugiyamaella lignohabitans 30037767 AWJ20_706 mRNA TMA22 NC_031672.1 2246114 2246680 D AWJ20_706 <2246114..>2246680 Sugiyamaella lignohabitans 30037768 AWJ20_707 mRNA ORT1 NC_031672.1 2246923 2248038 R AWJ20_707 complement(<2246923..>2248038) Sugiyamaella lignohabitans 30037769 AWJ20_708 mRNA AWJ20_708 NC_031672.1 2248753 2249604 R AWJ20_708 complement(<2248753..>2249604) Sugiyamaella lignohabitans 30037770 AWJ20_709 mRNA HRD3 NC_031672.1 2251710 2254736 R AWJ20_709 complement(<2251710..>2254736) Sugiyamaella lignohabitans 30037771 AWJ20_710 mRNA TAD2 NC_031672.1 2255737 2256066 D AWJ20_710 <2255737..>2256066 Sugiyamaella lignohabitans 30037773 AWJ20_711 mRNA SNX4 NC_031672.1 2256298 2257755 R AWJ20_711 complement(<2256298..>2257755) Sugiyamaella lignohabitans 30037774 AWJ20_712 mRNA THG1 NC_031672.1 2258434 2259123 R AWJ20_712 complement(<2258434..>2259123) Sugiyamaella lignohabitans 30037775 AWJ20_713 mRNA RPN3 NC_031672.1 2260393 2261964 D AWJ20_713 <2260393..>2261964 Sugiyamaella lignohabitans 30037776 AWJ20_714 mRNA JHD2 NC_031672.1 2262759 2265632 D AWJ20_714 <2262759..>2265632 Sugiyamaella lignohabitans 30037777 AWJ20_715 mRNA MET12 NC_031672.1 2265852 2267807 R AWJ20_715 complement(<2265852..>2267807) Sugiyamaella lignohabitans 30037778 AWJ20_716 mRNA FMP52 NC_031672.1 2268691 2269407 D AWJ20_716 <2268691..>2269407 Sugiyamaella lignohabitans 30037779 AWJ20_717 mRNA AWJ20_717 NC_031672.1 2270875 2271927 D AWJ20_717 <2270875..>2271927 Sugiyamaella lignohabitans 30037780 AWJ20_718 mRNA KAR2 NC_031672.1 2277835 2279868 D AWJ20_718 <2277835..>2279868 Sugiyamaella lignohabitans 30037781 AWJ20_719 mRNA MAD2 NC_031672.1 2280573 2281067 R AWJ20_719 complement(<2280573..>2281067) Sugiyamaella lignohabitans 30037782 AWJ20_720 mRNA TIF5 NC_031672.1 2283075 2284286 R AWJ20_720 complement(<2283075..>2284286) Sugiyamaella lignohabitans 30037784 AWJ20_721 mRNA AWJ20_721 NC_031672.1 2284009 2284299 D AWJ20_721 <2284009..>2284299 Sugiyamaella lignohabitans 30037785 AWJ20_722 mRNA SNT2 NC_031672.1 2287616 2291797 D AWJ20_722 <2287616..>2291797 Sugiyamaella lignohabitans 30037786 AWJ20_723 mRNA LEA1 NC_031672.1 2291910 2292602 R AWJ20_723 complement(<2291910..>2292602) Sugiyamaella lignohabitans 30037787 AWJ20_724 mRNA THI6 NC_031672.1 2292930 2294531 D AWJ20_724 <2292930..>2294531 Sugiyamaella lignohabitans 30037788 AWJ20_725 mRNA NMA111 NC_031672.1 2295262 2298480 D AWJ20_725 <2295262..>2298480 Sugiyamaella lignohabitans 30037789 AWJ20_726 mRNA CTF8 NC_031672.1 2302024 2302512 D AWJ20_726 <2302024..>2302512 Sugiyamaella lignohabitans 30037790 AWJ20_727 mRNA TOS1 NC_031672.1 2306445 2307887 D AWJ20_727 <2306445..>2307887 Sugiyamaella lignohabitans 30037791 AWJ20_728 mRNA AWJ20_728 NC_031672.1 2307105 2307650 R AWJ20_728 complement(<2307105..>2307650) Sugiyamaella lignohabitans 30037792 AWJ20_729 mRNA PCK1 NC_031672.1 2311470 2313143 D AWJ20_729 <2311470..>2313143 Sugiyamaella lignohabitans 30037793 AWJ20_730 mRNA SVF1 NC_031672.1 2314990 2316458 D AWJ20_730 join(<2314990..2315012,2315303..>2316458) Sugiyamaella lignohabitans 30037795 AWJ20_731 mRNA AWJ20_731 NC_031672.1 2319051 2320910 R AWJ20_731 complement(<2319051..>2320910) Sugiyamaella lignohabitans 30037796 AWJ20_732 mRNA AWJ20_732 NC_031672.1 2324744 2327986 D AWJ20_732 <2324744..>2327986 Sugiyamaella lignohabitans 30037797 AWJ20_733 mRNA AWJ20_733 NC_031672.1 2325307 2325567 R AWJ20_733 complement(<2325307..>2325567) Sugiyamaella lignohabitans 30037798 AWJ20_734 mRNA PRP42 NC_031672.1 2328276 2330279 R AWJ20_734 complement(<2328276..>2330279) Sugiyamaella lignohabitans 30037799 AWJ20_735 mRNA HEM3 NC_031672.1 2331325 2332548 D AWJ20_735 <2331325..>2332548 Sugiyamaella lignohabitans 30037800 AWJ20_737 mRNA AWJ20_737 NC_031672.1 2336375 2336953 D AWJ20_737 <2336375..>2336953 Sugiyamaella lignohabitans 30037802 AWJ20_738 mRNA BMH2 NC_031672.1 2341775 2342560 D AWJ20_738 <2341775..>2342560 Sugiyamaella lignohabitans 30037803 AWJ20_739 mRNA AWJ20_739 NC_031672.1 2343269 2343760 D AWJ20_739 <2343269..>2343760 Sugiyamaella lignohabitans 30037804 AWJ20_740 mRNA PRO3 NC_031672.1 2344022 2344915 R AWJ20_740 complement(<2344022..>2344915) Sugiyamaella lignohabitans 30037806 AWJ20_741 mRNA PEX5 NC_031672.1 2345680 2347497 R AWJ20_741 complement(<2345680..>2347497) Sugiyamaella lignohabitans 30037807 AWJ20_742 mRNA SRB4 NC_031672.1 2348721 2349821 R AWJ20_742 complement(<2348721..>2349821) Sugiyamaella lignohabitans 30037808 AWJ20_743 mRNA CWC2 NC_031672.1 2351022 2351729 D AWJ20_743 <2351022..>2351729 Sugiyamaella lignohabitans 30037809 AWJ20_744 mRNA ALY2 NC_031672.1 2354854 2357517 D AWJ20_744 <2354854..>2357517 Sugiyamaella lignohabitans 30037810 AWJ20_745 mRNA AWJ20_745 NC_031672.1 2358042 2358770 R AWJ20_745 complement(<2358042..>2358770) Sugiyamaella lignohabitans 30037811 AWJ20_746 mRNA saf1 NC_031672.1 2359034 2359780 D AWJ20_746 <2359034..>2359780 Sugiyamaella lignohabitans 30037812 AWJ20_747 mRNA AWJ20_747 NC_031672.1 2359964 2362111 R AWJ20_747 complement(<2359964..>2362111) Sugiyamaella lignohabitans 30037813 AWJ20_748 mRNA DAL1 NC_031672.1 2366473 2367861 D AWJ20_748 <2366473..>2367861 Sugiyamaella lignohabitans 30037814 AWJ20_749 mRNA AWJ20_749 NC_031672.1 2366673 2366999 R AWJ20_749 complement(<2366673..>2366999) Sugiyamaella lignohabitans 30037815 AWJ20_750 mRNA ATP4 NC_031672.1 2368217 2368882 R AWJ20_750 complement(<2368217..>2368882) Sugiyamaella lignohabitans 30037817 AWJ20_751 mRNA ENV9 NC_031672.1 2370425 2371387 R AWJ20_751 complement(<2370425..>2371387) Sugiyamaella lignohabitans 30037818 AWJ20_752 mRNA AWJ20_752 NC_031672.1 2372578 2376851 D AWJ20_752 join(<2372578..2374231,2376370..2376413,2376795..>2376851) Sugiyamaella lignohabitans 30037819 AWJ20_753 mRNA ACK1 NC_031672.1 2377133 2380531 D AWJ20_753 <2377133..>2380531 Sugiyamaella lignohabitans 30037820 AWJ20_754 mRNA SUB2 NC_031672.1 2381613 2381870 D AWJ20_754 <2381613..>2381870 Sugiyamaella lignohabitans 30037821 AWJ20_755 mRNA SUB2 NC_031672.1 2382998 2383756 D AWJ20_755 <2382998..>2383756 Sugiyamaella lignohabitans 30037822 AWJ20_756 mRNA AWJ20_756 NC_031672.1 2383998 2386193 R AWJ20_756 complement(<2383998..>2386193) Sugiyamaella lignohabitans 30037823 AWJ20_757 mRNA AWJ20_757 NC_031672.1 2387954 2390185 D AWJ20_757 <2387954..>2390185 Sugiyamaella lignohabitans 30037824 AWJ20_758 mRNA TAF10 NC_031672.1 2390474 2391379 R AWJ20_758 complement(<2390474..>2391379) Sugiyamaella lignohabitans 30037825 AWJ20_759 mRNA AWJ20_759 NC_031672.1 2392792 2394714 R AWJ20_759 complement(<2392792..>2394714) Sugiyamaella lignohabitans 30037826 AWJ20_760 mRNA GLR1 NC_031672.1 2396421 2397857 D AWJ20_760 <2396421..>2397857 Sugiyamaella lignohabitans 30037828 AWJ20_761 mRNA SNP1 NC_031672.1 2398517 2399368 D AWJ20_761 <2398517..>2399368 Sugiyamaella lignohabitans 30037829 AWJ20_762 mRNA PHO12 NC_031672.1 2401178 2402632 D AWJ20_762 <2401178..>2402632 Sugiyamaella lignohabitans 30037830 AWJ20_763 mRNA PHO3 NC_031672.1 2403863 2405371 D AWJ20_763 <2403863..>2405371 Sugiyamaella lignohabitans 30037831 AWJ20_764 mRNA AWJ20_764 NC_031672.1 2405864 2406829 D AWJ20_764 <2405864..>2406829 Sugiyamaella lignohabitans 30037832 AWJ20_765 mRNA FOX2 NC_031672.1 2408943 2411612 R AWJ20_765 complement(<2408943..>2411612) Sugiyamaella lignohabitans 30037833 AWJ20_766 mRNA ICL2 NC_031672.1 2413231 2414886 D AWJ20_766 <2413231..>2414886 Sugiyamaella lignohabitans 30037834 AWJ20_767 mRNA AWJ20_767 NC_031672.1 2415311 2418043 D AWJ20_767 <2415311..>2418043 Sugiyamaella lignohabitans 30037835 AWJ20_768 mRNA SHY1 NC_031672.1 2417642 2418382 R AWJ20_768 complement(<2417642..>2418382) Sugiyamaella lignohabitans 30037836 AWJ20_769 mRNA PFK26 NC_031672.1 2419129 2421405 R AWJ20_769 complement(<2419129..>2421405) Sugiyamaella lignohabitans 30037837 AWJ20_770 mRNA AWJ20_770 NC_031672.1 2430298 2431905 R AWJ20_770 complement(<2430298..>2431905) Sugiyamaella lignohabitans 30037839 AWJ20_771 mRNA AWJ20_771 NC_031672.1 2434301 2434804 D AWJ20_771 <2434301..>2434804 Sugiyamaella lignohabitans 30037840 AWJ20_772 mRNA AWJ20_772 NC_031672.1 2437414 2441073 R AWJ20_772 complement(<2437414..>2441073) Sugiyamaella lignohabitans 30037841 AWJ20_773 mRNA AWJ20_773 NC_031672.1 2441313 2441585 R AWJ20_773 complement(<2441313..>2441585) Sugiyamaella lignohabitans 30037842 AWJ20_774 mRNA AWJ20_774 NC_031672.1 2447405 2448943 D AWJ20_774 <2447405..>2448943 Sugiyamaella lignohabitans 30037843 AWJ20_775 mRNA TNA1 NC_031672.1 2454484 2455848 D AWJ20_775 <2454484..>2455848 Sugiyamaella lignohabitans 30037844 AWJ20_776 mRNA PUS7 NC_031672.1 2456284 2458365 D AWJ20_776 <2456284..>2458365 Sugiyamaella lignohabitans 30037845 AWJ20_777 mRNA HUT1 NC_031672.1 2458591 2459745 R AWJ20_777 complement(<2458591..>2459745) Sugiyamaella lignohabitans 30037846 AWJ20_778 mRNA PRE1 NC_031672.1 2460477 2461067 D AWJ20_778 <2460477..>2461067 Sugiyamaella lignohabitans 30037847 AWJ20_779 mRNA MSS4 NC_031672.1 2466396 2468240 D AWJ20_779 <2466396..>2468240 Sugiyamaella lignohabitans 30037848 AWJ20_780 mRNA PRP22 NC_031672.1 2469875 2473660 D AWJ20_780 <2469875..>2473660 Sugiyamaella lignohabitans 30037850 AWJ20_781 mRNA TPI1 NC_031672.1 2473989 2474708 R AWJ20_781 complement(<2473989..>2474708) Sugiyamaella lignohabitans 30037851 AWJ20_782 mRNA DAM1 NC_031672.1 2475750 2476607 D AWJ20_782 <2475750..>2476607 Sugiyamaella lignohabitans 30037852 AWJ20_783 mRNA HPM1 NC_031672.1 2476726 2477799 R AWJ20_783 complement(<2476726..>2477799) Sugiyamaella lignohabitans 30037853 AWJ20_784 mRNA COG5 NC_031672.1 2478051 2479199 D AWJ20_784 <2478051..>2479199 Sugiyamaella lignohabitans 30037854 AWJ20_785 mRNA AWJ20_785 NC_031672.1 2479628 2480464 D AWJ20_785 <2479628..>2480464 Sugiyamaella lignohabitans 30037855 AWJ20_786 mRNA MCH4 NC_031672.1 2480737 2482170 R AWJ20_786 complement(<2480737..>2482170) Sugiyamaella lignohabitans 30037856 AWJ20_787 mRNA AWJ20_787 NC_031672.1 2484100 2485710 D AWJ20_787 <2484100..>2485710 Sugiyamaella lignohabitans 30037857 AWJ20_788 mRNA TPO1 NC_031672.1 2486509 2488134 D AWJ20_788 <2486509..>2488134 Sugiyamaella lignohabitans 30037858 AWJ20_789 mRNA ARC35 NC_031672.1 2488772 2489710 D AWJ20_789 <2488772..>2489710 Sugiyamaella lignohabitans 30037859 AWJ20_790 mRNA MRPS12 NC_031672.1 2490026 2490727 R AWJ20_790 complement(<2490026..>2490727) Sugiyamaella lignohabitans 30037861 AWJ20_791 mRNA PPG1 NC_031672.1 2491598 2492572 D AWJ20_791 <2491598..>2492572 Sugiyamaella lignohabitans 30037862 AWJ20_792 mRNA HWH4 NC_031672.1 2497380 2498201 D AWJ20_792 <2497380..>2498201 Sugiyamaella lignohabitans 30037863 AWJ20_793 mRNA DNF2 NC_031672.1 2502062 2503144 D AWJ20_793 <2502062..>2503144 Sugiyamaella lignohabitans 30037864 AWJ20_794 mRNA DNF1 NC_031672.1 2503238 2507401 D AWJ20_794 <2503238..>2507401 Sugiyamaella lignohabitans 30037865 AWJ20_795 mRNA AWJ20_795 NC_031672.1 2505406 2505705 R AWJ20_795 complement(<2505406..>2505705) Sugiyamaella lignohabitans 30037866 AWJ20_796 mRNA EKI1 NC_031672.1 2507650 2509026 R AWJ20_796 complement(<2507650..>2509026) Sugiyamaella lignohabitans 30037867 AWJ20_797 mRNA JJJ1 NC_031672.1 2511271 2512854 R AWJ20_797 complement(<2511271..>2512854) Sugiyamaella lignohabitans 30037868 AWJ20_798 mRNA MOD5 NC_031672.1 2514204 2514941 D AWJ20_798 <2514204..>2514941 Sugiyamaella lignohabitans 30037869 AWJ20_799 mRNA AWJ20_799 NC_031672.1 2515000 2515329 R AWJ20_799 complement(<2515000..>2515329) Sugiyamaella lignohabitans 30037870 AWJ20_800 mRNA RIM20 NC_031672.1 2515560 2517113 R AWJ20_800 complement(<2515560..>2517113) Sugiyamaella lignohabitans 30037873 AWJ20_801 mRNA APL4 NC_031672.1 2517657 2520212 R AWJ20_801 complement(<2517657..>2520212) Sugiyamaella lignohabitans 30037874 AWJ20_802 mRNA SEC24 NC_031672.1 2520801 2523704 R AWJ20_802 complement(<2520801..>2523704) Sugiyamaella lignohabitans 30037875 AWJ20_803 mRNA SLM3 NC_031672.1 2528585 2529733 D AWJ20_803 <2528585..>2529733 Sugiyamaella lignohabitans 30037876 AWJ20_804 mRNA AWJ20_804 NC_031672.1 2530135 2530587 R AWJ20_804 complement(<2530135..>2530587) Sugiyamaella lignohabitans 30037877 AWJ20_806 mRNA NDE1 NC_031672.1 2533750 2535537 D AWJ20_806 <2533750..>2535537 Sugiyamaella lignohabitans 30037879 AWJ20_807 mRNA MSS4 NC_031672.1 2536938 2538782 D AWJ20_807 <2536938..>2538782 Sugiyamaella lignohabitans 30037880 AWJ20_808 mRNA AWJ20_808 NC_031672.1 2545284 2545655 D AWJ20_808 <2545284..>2545655 Sugiyamaella lignohabitans 30037881 AWJ20_809 mRNA KAP95 NC_031672.1 2547380 2550007 R AWJ20_809 complement(<2547380..>2550007) Sugiyamaella lignohabitans 30037882 AWJ20_810 mRNA PSO2 NC_031672.1 2551481 2553766 R AWJ20_810 complement(<2551481..>2553766) Sugiyamaella lignohabitans 30037884 AWJ20_811 mRNA DAL5 NC_031672.1 2555341 2556969 R AWJ20_811 complement(<2555341..>2556969) Sugiyamaella lignohabitans 30037885 AWJ20_812 mRNA AWJ20_812 NC_031672.1 2577587 2578291 D AWJ20_812 <2577587..>2578291 Sugiyamaella lignohabitans 30037886 AWJ20_813 mRNA ASG1 NC_031672.1 2578724 2580721 R AWJ20_813 complement(<2578724..>2580721) Sugiyamaella lignohabitans 30037887 AWJ20_814 mRNA AWJ20_814 NC_031672.1 2582668 2584248 R AWJ20_814 complement(join(<2582668..2583981,2584210..>2584248)) Sugiyamaella lignohabitans 30037888 AWJ20_815 mRNA TAP42 NC_031672.1 2584531 2585649 D AWJ20_815 <2584531..>2585649 Sugiyamaella lignohabitans 30037889 AWJ20_816 mRNA STE23 NC_031672.1 2585774 2588956 R AWJ20_816 complement(<2585774..>2588956) Sugiyamaella lignohabitans 30037890 AWJ20_817 mRNA MSS4 NC_031672.1 2591378 2593225 R AWJ20_817 complement(<2591378..>2593225) Sugiyamaella lignohabitans 30037891 AWJ20_818 mRNA MSS4 NC_031672.1 2595027 2595932 R AWJ20_818 complement(<2595027..>2595932) Sugiyamaella lignohabitans 30037892 AWJ20_819 mRNA RSP5 NC_031672.1 2605318 2607576 D AWJ20_819 <2605318..>2607576 Sugiyamaella lignohabitans 30037893 AWJ20_820 mRNA VBA1 NC_031672.1 2608570 2610360 D AWJ20_820 <2608570..>2610360 Sugiyamaella lignohabitans 30037895 AWJ20_821 mRNA PRI1 NC_031672.1 2614469 2615704 D AWJ20_821 <2614469..>2615704 Sugiyamaella lignohabitans 30037896 AWJ20_822 mRNA AWJ20_822 NC_031672.1 2616117 2616851 D AWJ20_822 <2616117..>2616851 Sugiyamaella lignohabitans 30037897 AWJ20_823 mRNA DBF20 NC_031672.1 2617019 2618725 R AWJ20_823 complement(<2617019..>2618725) Sugiyamaella lignohabitans 30037898 AWJ20_824 mRNA YRB30 NC_031672.1 2619560 2621254 D AWJ20_824 <2619560..>2621254 Sugiyamaella lignohabitans 30037899 AWJ20_825 mRNA HAA1 NC_031672.1 2621429 2622979 R AWJ20_825 complement(<2621429..>2622979) Sugiyamaella lignohabitans 30037900 AWJ20_826 mRNA IRA1 NC_031672.1 2627063 2629345 R AWJ20_826 complement(<2627063..>2629345) Sugiyamaella lignohabitans 30037901 AWJ20_827 mRNA AWJ20_827 NC_031672.1 2630762 2635456 D AWJ20_827 <2630762..>2635456 Sugiyamaella lignohabitans 30037902 AWJ20_828 mRNA BNA6 NC_031672.1 2635578 2636465 R AWJ20_828 complement(<2635578..>2636465) Sugiyamaella lignohabitans 30037903 AWJ20_829 mRNA PUF3 NC_031672.1 2636728 2639622 R AWJ20_829 complement(<2636728..>2639622) Sugiyamaella lignohabitans 30037904 AWJ20_830 mRNA TFC1 NC_031672.1 2640384 2641808 R AWJ20_830 complement(<2640384..>2641808) Sugiyamaella lignohabitans 30037906 AWJ20_831 mRNA SHP1 NC_031672.1 2642344 2643837 R AWJ20_831 complement(join(<2642344..2643289,2643624..2643628,2643718..>2643837)) Sugiyamaella lignohabitans 30037907 AWJ20_832 mRNA AWJ20_832 NC_031672.1 2644085 2645032 R AWJ20_832 complement(<2644085..>2645032) Sugiyamaella lignohabitans 30037908 AWJ20_833 mRNA GOR1 NC_031672.1 2646233 2647237 R AWJ20_833 complement(<2646233..>2647237) Sugiyamaella lignohabitans 30037909 AWJ20_834 mRNA AWJ20_834 NC_031672.1 2647514 2650594 R AWJ20_834 complement(<2647514..>2650594) Sugiyamaella lignohabitans 30037910 AWJ20_835 mRNA YET3 NC_031672.1 2651824 2652414 D AWJ20_835 <2651824..>2652414 Sugiyamaella lignohabitans 30037911 AWJ20_836 mRNA DUS3 NC_031672.1 2652610 2654508 R AWJ20_836 complement(<2652610..>2654508) Sugiyamaella lignohabitans 30037912 AWJ20_837 mRNA RSM18 NC_031672.1 2655008 2655424 R AWJ20_837 complement(<2655008..>2655424) Sugiyamaella lignohabitans 30037913 AWJ20_838 mRNA AFG2 NC_031672.1 2655662 2658016 D AWJ20_838 <2655662..>2658016 Sugiyamaella lignohabitans 30037914 AWJ20_839 mRNA AWJ20_839 NC_031672.1 2663307 2665022 R AWJ20_839 complement(<2663307..>2665022) Sugiyamaella lignohabitans 30037915 AWJ20_840 mRNA VPS9 NC_031672.1 2665402 2667426 D AWJ20_840 <2665402..>2667426 Sugiyamaella lignohabitans 30037917 AWJ20_841 mRNA RET2 NC_031672.1 2670171 2671427 D AWJ20_841 <2670171..>2671427 Sugiyamaella lignohabitans 30037918 AWJ20_842 mRNA PDE1 NC_031672.1 2671616 2672926 R AWJ20_842 complement(<2671616..>2672926) Sugiyamaella lignohabitans 30037919 AWJ20_843 mRNA PRE4 NC_031672.1 2674174 2674554 R AWJ20_843 complement(<2674174..>2674554) Sugiyamaella lignohabitans 30037920 AWJ20_844 mRNA PRE4 NC_031672.1 2674872 2675153 R AWJ20_844 complement(<2674872..>2675153) Sugiyamaella lignohabitans 30037921 AWJ20_845 mRNA AWJ20_845 NC_031672.1 2675559 2677355 D AWJ20_845 <2675559..>2677355 Sugiyamaella lignohabitans 30037922 AWJ20_846 mRNA AWJ20_846 NC_031672.1 2677750 2679207 D AWJ20_846 <2677750..>2679207 Sugiyamaella lignohabitans 30037923 AWJ20_847 mRNA BNA7 NC_031672.1 2679549 2680385 D AWJ20_847 <2679549..>2680385 Sugiyamaella lignohabitans 30037924 AWJ20_848 mRNA AWJ20_848 NC_031672.1 2682121 2682402 D AWJ20_848 <2682121..>2682402 Sugiyamaella lignohabitans 30037925 AWJ20_849 mRNA AWJ20_849 NC_031672.1 2682544 2683533 R AWJ20_849 complement(<2682544..>2683533) Sugiyamaella lignohabitans 30037926 AWJ20_851 mRNA VAM6 NC_031672.1 2685788 2688640 D AWJ20_851 <2685788..>2688640 Sugiyamaella lignohabitans 30037929 AWJ20_852 mRNA UTP21 NC_031672.1 2688701 2691466 R AWJ20_852 complement(<2688701..>2691466) Sugiyamaella lignohabitans 30037930 AWJ20_853 mRNA VIP1 NC_031672.1 2692099 2695260 D AWJ20_853 <2692099..>2695260 Sugiyamaella lignohabitans 30037931 AWJ20_854 mRNA PRS1 NC_031672.1 2695405 2696904 R AWJ20_854 complement(<2695405..>2696904) Sugiyamaella lignohabitans 30037932 AWJ20_855 mRNA NUF2 NC_031672.1 2698246 2699292 D AWJ20_855 <2698246..>2699292 Sugiyamaella lignohabitans 30037933 AWJ20_856 mRNA AWJ20_856 NC_031672.1 2701491 2703905 D AWJ20_856 <2701491..>2703905 Sugiyamaella lignohabitans 30037934 AWJ20_857 mRNA HST1 NC_031672.1 2704075 2705985 R AWJ20_857 complement(<2704075..>2705985) Sugiyamaella lignohabitans 30037935 AWJ20_858 mRNA PKC1 NC_031672.1 2708832 2709278 D AWJ20_858 <2708832..>2709278 Sugiyamaella lignohabitans 30037936 AWJ20_859 mRNA PKC1 NC_031672.1 2709386 2712595 D AWJ20_859 <2709386..>2712595 Sugiyamaella lignohabitans 30037937 AWJ20_860 mRNA YPS3 NC_031672.1 2713287 2714633 D AWJ20_860 <2713287..>2714633 Sugiyamaella lignohabitans 30037939 AWJ20_861 mRNA FAS1 NC_031672.1 2717777 2724034 D AWJ20_861 <2717777..>2724034 Sugiyamaella lignohabitans 30037940 AWJ20_862 mRNA BER1 NC_031672.1 2724178 2724909 R AWJ20_862 complement(<2724178..>2724909) Sugiyamaella lignohabitans 30037941 AWJ20_863 mRNA HHT2 NC_031672.1 2725144 2725563 D AWJ20_863 <2725144..>2725563 Sugiyamaella lignohabitans 30037942 AWJ20_864 mRNA PKP1 NC_031672.1 2725787 2727226 R AWJ20_864 complement(<2725787..>2727226) Sugiyamaella lignohabitans 30037943 AWJ20_865 mRNA PEX1 NC_031672.1 2728462 2731725 R AWJ20_865 complement(<2728462..>2731725) Sugiyamaella lignohabitans 30037944 AWJ20_866 mRNA AWJ20_866 NC_031672.1 2733079 2734290 D AWJ20_866 <2733079..>2734290 Sugiyamaella lignohabitans 30037945 AWJ20_868 mRNA MSS4 NC_031672.1 2737559 2739625 R AWJ20_868 complement(<2737559..>2739625) Sugiyamaella lignohabitans 30037947 AWJ20_869 mRNA MSS4 NC_031672.1 2741011 2742597 R AWJ20_869 complement(<2741011..>2742597) Sugiyamaella lignohabitans 30037948 AWJ20_870 mRNA RPO31 NC_031672.1 2748430 2752413 D AWJ20_870 <2748430..>2752413 Sugiyamaella lignohabitans 30037950 AWJ20_871 mRNA AWJ20_871 NC_031672.1 2752795 2753688 R AWJ20_871 complement(<2752795..>2753688) Sugiyamaella lignohabitans 30037951 AWJ20_872 mRNA HIR1 NC_031672.1 2759039 2762095 R AWJ20_872 complement(<2759039..>2762095) Sugiyamaella lignohabitans 30037952 AWJ20_873 mRNA CPS1 NC_031672.1 2763322 2765091 R AWJ20_873 complement(<2763322..>2765091) Sugiyamaella lignohabitans 30037953 AWJ20_874 mRNA MSS4 NC_031672.1 2769968 2771779 D AWJ20_874 <2769968..>2771779 Sugiyamaella lignohabitans 30037954 AWJ20_875 mRNA YAK1 NC_031672.1 2774026 2775534 D AWJ20_875 <2774026..>2775534 Sugiyamaella lignohabitans 30037955 AWJ20_876 mRNA MRPL51 NC_031672.1 2775750 2776106 R AWJ20_876 complement(<2775750..>2776106) Sugiyamaella lignohabitans 30037956 AWJ20_877 mRNA AWJ20_877 NC_031672.1 2776984 2777634 D AWJ20_877 <2776984..>2777634 Sugiyamaella lignohabitans 30037957 AWJ20_878 mRNA AWJ20_878 NC_031672.1 2778074 2780404 D AWJ20_878 <2778074..>2780404 Sugiyamaella lignohabitans 30037958 AWJ20_879 mRNA ASM4 NC_031672.1 2780703 2782634 R AWJ20_879 complement(<2780703..>2782634) Sugiyamaella lignohabitans 30037959 AWJ20_880 mRNA RPN6 NC_031672.1 2783198 2784541 D AWJ20_880 <2783198..>2784541 Sugiyamaella lignohabitans 30037961 AWJ20_881 mRNA AWJ20_881 NC_031672.1 2785250 2787031 D AWJ20_881 <2785250..>2787031 Sugiyamaella lignohabitans 30037962 AWJ20_882 mRNA tam14 NC_031672.1 2788053 2789204 R AWJ20_882 complement(<2788053..>2789204) Sugiyamaella lignohabitans 30037963 AWJ20_883 mRNA MSS4 NC_031672.1 2791193 2793037 R AWJ20_883 complement(<2791193..>2793037) Sugiyamaella lignohabitans 30037964 AWJ20_885 mRNA PDB1 NC_031672.1 2799541 2800722 R AWJ20_885 complement(<2799541..>2800722) Sugiyamaella lignohabitans 30037966 AWJ20_886 mRNA RIM13 NC_031672.1 2802332 2804326 R AWJ20_886 complement(<2802332..>2804326) Sugiyamaella lignohabitans 30037967 AWJ20_887 mRNA RAM1 NC_031672.1 2805414 2806652 D AWJ20_887 <2805414..>2806652 Sugiyamaella lignohabitans 30037968 AWJ20_888 mRNA btb2 NC_031672.1 2809099 2810691 D AWJ20_888 <2809099..>2810691 Sugiyamaella lignohabitans 30037969 AWJ20_889 mRNA CWC24 NC_031672.1 2811392 2812390 R AWJ20_889 complement(<2811392..>2812390) Sugiyamaella lignohabitans 30037970 AWJ20_890 mRNA RPT5 NC_031672.1 2812886 2814211 D AWJ20_890 <2812886..>2814211 Sugiyamaella lignohabitans 30037972 AWJ20_891 mRNA AWJ20_891 NC_031672.1 2813653 2813985 R AWJ20_891 complement(<2813653..>2813985) Sugiyamaella lignohabitans 30037973 AWJ20_892 mRNA CDC40 NC_031672.1 2814437 2816248 R AWJ20_892 complement(<2814437..>2816248) Sugiyamaella lignohabitans 30037974 AWJ20_893 mRNA BCP1 NC_031672.1 2816722 2817498 D AWJ20_893 <2816722..>2817498 Sugiyamaella lignohabitans 30037975 AWJ20_894 mRNA PEX30 NC_031672.1 2818562 2819944 D AWJ20_894 <2818562..>2819944 Sugiyamaella lignohabitans 30037976 AWJ20_895 mRNA AWJ20_895 NC_031672.1 2824533 2825576 D AWJ20_895 <2824533..>2825576 Sugiyamaella lignohabitans 30037977 AWJ20_896 mRNA RFT1 NC_031672.1 2838359 2841094 D AWJ20_896 <2838359..>2841094 Sugiyamaella lignohabitans 30037978 AWJ20_897 mRNA AWJ20_897 NC_031672.1 2841332 2842618 R AWJ20_897 complement(<2841332..>2842618) Sugiyamaella lignohabitans 30037979 AWJ20_898 mRNA SSB2 NC_031672.1 2848612 2850462 D AWJ20_898 <2848612..>2850462 Sugiyamaella lignohabitans 30037980 AWJ20_899 mRNA MSS4 NC_031672.1 2851931 2854021 R AWJ20_899 complement(<2851931..>2854021) Sugiyamaella lignohabitans 30037981 AWJ20_900 mRNA RIM8 NC_031672.1 2854809 2857337 R AWJ20_900 complement(<2854809..>2857337) Sugiyamaella lignohabitans 30037984 AWJ20_901 mRNA AWJ20_901 NC_031672.1 2861671 2867016 D AWJ20_901 <2861671..>2867016 Sugiyamaella lignohabitans 30037985 AWJ20_902 mRNA NUT1 NC_031672.1 2870982 2874485 R AWJ20_902 complement(<2870982..>2874485) Sugiyamaella lignohabitans 30037986 AWJ20_903 mRNA TMA19 NC_031672.1 2882107 2882619 D AWJ20_903 <2882107..>2882619 Sugiyamaella lignohabitans 30037987 AWJ20_904 mRNA TRM13 NC_031672.1 2882931 2884382 R AWJ20_904 complement(<2882931..>2884382) Sugiyamaella lignohabitans 30037988 AWJ20_906 mRNA AWJ20_906 NC_031672.1 2887936 2889684 D AWJ20_906 <2887936..>2889684 Sugiyamaella lignohabitans 30037990 AWJ20_908 mRNA GTT1 NC_031672.1 2898304 2898984 D AWJ20_908 <2898304..>2898984 Sugiyamaella lignohabitans 30037992 AWJ20_909 mRNA GZF3 NC_031672.1 2901394 2903547 R AWJ20_909 complement(<2901394..>2903547) Sugiyamaella lignohabitans 30037993 AWJ20_910 mRNA HTA2 NC_031672.1 2907509 2907910 R AWJ20_910 complement(<2907509..>2907910) Sugiyamaella lignohabitans 30037995 AWJ20_911 mRNA HTB1 NC_031672.1 2909231 2909644 D AWJ20_911 <2909231..>2909644 Sugiyamaella lignohabitans 30037996 AWJ20_912 mRNA NPL6 NC_031672.1 2911188 2912651 D AWJ20_912 <2911188..>2912651 Sugiyamaella lignohabitans 30037997 AWJ20_913 mRNA ZRG17 NC_031672.1 2913573 2915816 R AWJ20_913 complement(<2913573..>2915816) Sugiyamaella lignohabitans 30037998 AWJ20_914 mRNA TRP4 NC_031672.1 2916802 2917887 D AWJ20_914 <2916802..>2917887 Sugiyamaella lignohabitans 30037999 AWJ20_915 mRNA pcp1 NC_031672.1 2918266 2921190 D AWJ20_915 <2918266..>2921190 Sugiyamaella lignohabitans 30038000 AWJ20_916 mRNA AWJ20_916 NC_031672.1 2923461 2924072 R AWJ20_916 complement(<2923461..>2924072) Sugiyamaella lignohabitans 30038001 AWJ20_917 mRNA GGA2 NC_031672.1 2925541 2927253 D AWJ20_917 <2925541..>2927253 Sugiyamaella lignohabitans 30038002 AWJ20_918 mRNA EAF1 NC_031672.1 2927684 2931613 R AWJ20_918 complement(<2927684..>2931613) Sugiyamaella lignohabitans 30038003 AWJ20_919 mRNA AWJ20_919 NC_031672.1 2932860 2934881 D AWJ20_919 <2932860..>2934881 Sugiyamaella lignohabitans 30038004 AWJ20_920 mRNA AWJ20_920 NC_031672.1 2936855 2937862 R AWJ20_920 complement(<2936855..>2937862) Sugiyamaella lignohabitans 30038006 AWJ20_921 mRNA ARC1 NC_031672.1 2938854 2940276 D AWJ20_921 join(<2938854..2938919,2938990..>2940276) Sugiyamaella lignohabitans 30038007 AWJ20_922 mRNA AWJ20_922 NC_031672.1 2941915 2944320 D AWJ20_922 <2941915..>2944320 Sugiyamaella lignohabitans 30038008 AWJ20_923 mRNA AWJ20_923 NC_031672.1 2944700 2946964 R AWJ20_923 complement(<2944700..>2946964) Sugiyamaella lignohabitans 30038009 AWJ20_924 mRNA AWJ20_924 NC_031672.1 2947007 2948086 R AWJ20_924 complement(<2947007..>2948086) Sugiyamaella lignohabitans 30038010 AWJ20_925 mRNA IAH1 NC_031672.1 2948747 2949451 R AWJ20_925 complement(<2948747..>2949451) Sugiyamaella lignohabitans 30038011 AWJ20_926 mRNA YPR1 NC_031672.1 2950019 2950909 D AWJ20_926 <2950019..>2950909 Sugiyamaella lignohabitans 30038012 AWJ20_928 mRNA GAL2 NC_031672.1 2952253 2953833 R AWJ20_928 complement(<2952253..>2953833) Sugiyamaella lignohabitans 30038014 AWJ20_929 mRNA ERT1 NC_031672.1 2961165 2962850 D AWJ20_929 <2961165..>2962850 Sugiyamaella lignohabitans 30038015 AWJ20_930 mRNA ACT1 NC_031672.1 2964839 2965879 D AWJ20_930 <2964839..>2965879 Sugiyamaella lignohabitans 30038017 AWJ20_931 mRNA MSS4 NC_031672.1 2966988 2968832 D AWJ20_931 <2966988..>2968832 Sugiyamaella lignohabitans 30038018 AWJ20_933 mRNA AWJ20_933 NC_031672.1 2974243 2975304 D AWJ20_933 <2974243..>2975304 Sugiyamaella lignohabitans 30038020 AWJ20_934 mRNA AWJ20_934 NC_031672.1 2976781 2977818 R AWJ20_934 complement(<2976781..>2977818) Sugiyamaella lignohabitans 30038021 AWJ20_935 mRNA DID2 NC_031672.1 2980207 2980551 R AWJ20_935 complement(<2980207..>2980551) Sugiyamaella lignohabitans 30038022 AWJ20_936 mRNA SKI2 NC_031672.1 2981742 2983688 R AWJ20_936 complement(<2981742..>2983688) Sugiyamaella lignohabitans 30038023 AWJ20_937 mRNA SKI2 NC_031672.1 2984258 2985377 R AWJ20_937 complement(join(<2984258..2984265,2984351..>2985377)) Sugiyamaella lignohabitans 30038024 AWJ20_938 mRNA IDP2 NC_031672.1 2988031 2989278 D AWJ20_938 <2988031..>2989278 Sugiyamaella lignohabitans 30038025 AWJ20_939 mRNA AWJ20_939 NC_031672.1 2990948 2992390 D AWJ20_939 <2990948..>2992390 Sugiyamaella lignohabitans 30038026 AWJ20_940 mRNA AWJ20_940 NC_031672.1 2992753 2993472 D AWJ20_940 <2992753..>2993472 Sugiyamaella lignohabitans 30038028 AWJ20_941 mRNA AWJ20_941 NC_031672.1 2993751 2995337 R AWJ20_941 complement(<2993751..>2995337) Sugiyamaella lignohabitans 30038029 AWJ20_942 mRNA AWJ20_942 NC_031672.1 2999214 3000317 R AWJ20_942 complement(<2999214..>3000317) Sugiyamaella lignohabitans 30038030 AWJ20_943 mRNA MIS1 NC_031672.1 3001764 3003494 D AWJ20_943 <3001764..>3003494 Sugiyamaella lignohabitans 30038031 AWJ20_944 mRNA AWJ20_944 NC_031672.1 3003657 3003899 R AWJ20_944 complement(<3003657..>3003899) Sugiyamaella lignohabitans 30038032 AWJ20_945 mRNA MIS1 NC_031672.1 3003832 3004617 D AWJ20_945 <3003832..>3004617 Sugiyamaella lignohabitans 30038033 AWJ20_947 mRNA MDY2 NC_031672.1 3005649 3006149 D AWJ20_947 <3005649..>3006149 Sugiyamaella lignohabitans 30038035 AWJ20_948 mRNA MRPL3 NC_031672.1 3006345 3007490 R AWJ20_948 complement(<3006345..>3007490) Sugiyamaella lignohabitans 30038036 AWJ20_949 mRNA STU1 NC_031672.1 3009002 3013255 R AWJ20_949 complement(<3009002..>3013255) Sugiyamaella lignohabitans 30038037 AWJ20_952 mRNA POB3 NC_031672.1 3015545 3017275 R AWJ20_952 complement(<3015545..>3017275) Sugiyamaella lignohabitans 30038041 AWJ20_953 mRNA AST1 NC_031672.1 3017785 3018855 R AWJ20_953 complement(<3017785..>3018855) Sugiyamaella lignohabitans 30038042 AWJ20_954 mRNA APS2 NC_031672.1 3020414 3020821 R AWJ20_954 complement(<3020414..>3020821) Sugiyamaella lignohabitans 30038043 AWJ20_955 mRNA DUR3 NC_031672.1 3024443 3026230 R AWJ20_955 complement(<3024443..>3026230) Sugiyamaella lignohabitans 30038044 AWJ20_956 mRNA DUR3 NC_031672.1 3026261 3026593 R AWJ20_956 complement(<3026261..>3026593) Sugiyamaella lignohabitans 30038045 AWJ20_957 mRNA AWJ20_957 NC_031672.1 3028370 3029215 D AWJ20_957 <3028370..>3029215 Sugiyamaella lignohabitans 30038046 AWJ20_958 mRNA AWJ20_958 NC_031672.1 3029612 3030796 R AWJ20_958 complement(<3029612..>3030796) Sugiyamaella lignohabitans 30038047 AWJ20_959 mRNA VCX1 NC_031672.1 3035354 3036529 D AWJ20_959 <3035354..>3036529 Sugiyamaella lignohabitans 30038048 AWJ20_960 mRNA AWJ20_960 NC_031672.1 3035977 3036261 R AWJ20_960 complement(<3035977..>3036261) Sugiyamaella lignohabitans 30038050 AWJ20_961 mRNA gms1 NC_031672.1 3038557 3039735 D AWJ20_961 <3038557..>3039735 Sugiyamaella lignohabitans 30038051 AWJ20_962 mRNA PCL1 NC_031672.1 3047266 3048381 D AWJ20_962 <3047266..>3048381 Sugiyamaella lignohabitans 30038052 AWJ20_963 mRNA MTG2 NC_031672.1 3048644 3050209 R AWJ20_963 complement(<3048644..>3050209) Sugiyamaella lignohabitans 30038053 AWJ20_964 mRNA ARP8 NC_031672.1 3050738 3053476 D AWJ20_964 <3050738..>3053476 Sugiyamaella lignohabitans 30038054 AWJ20_965 mRNA AWJ20_965 NC_031672.1 3053660 3054538 R AWJ20_965 complement(<3053660..>3054538) Sugiyamaella lignohabitans 30038055 AWJ20_966 mRNA POL90 NC_031672.1 3055228 3058125 R AWJ20_966 complement(<3055228..>3058125) Sugiyamaella lignohabitans 30038056 AWJ20_968 mRNA POL31 NC_031672.1 3061678 3062751 D AWJ20_968 <3061678..>3062751 Sugiyamaella lignohabitans 30038058 AWJ20_969 mRNA MSM1 NC_031672.1 3062894 3064441 R AWJ20_969 complement(<3062894..>3064441) Sugiyamaella lignohabitans 30038059 AWJ20_970 mRNA AWJ20_970 NC_031672.1 3068156 3068524 R AWJ20_970 complement(<3068156..>3068524) Sugiyamaella lignohabitans 30038061 AWJ20_971 mRNA AWJ20_971 NC_031672.1 3069427 3070287 D AWJ20_971 <3069427..>3070287 Sugiyamaella lignohabitans 30038062 AWJ20_972 mRNA BRE2 NC_031672.1 3070574 3072097 R AWJ20_972 complement(<3070574..>3072097) Sugiyamaella lignohabitans 30038063 AWJ20_973 mRNA MSB2 NC_031672.1 3077586 3081839 D AWJ20_973 join(<3077586..3078759,3078826..>3081839) Sugiyamaella lignohabitans 30038064 AWJ20_974 mRNA STR3 NC_031672.1 3082651 3084030 D AWJ20_974 <3082651..>3084030 Sugiyamaella lignohabitans 30038065 AWJ20_975 mRNA GLO3 NC_031672.1 3084469 3086007 R AWJ20_975 complement(<3084469..>3086007) Sugiyamaella lignohabitans 30038066 AWJ20_976 mRNA AWJ20_976 NC_031672.1 3086826 3087560 D AWJ20_976 <3086826..>3087560 Sugiyamaella lignohabitans 30038067 AWJ20_977 mRNA MRP49 NC_031672.1 3094193 3094591 R AWJ20_977 complement(<3094193..>3094591) Sugiyamaella lignohabitans 30038068 AWJ20_978 mRNA PNP1 NC_031672.1 3095133 3096083 D AWJ20_978 <3095133..>3096083 Sugiyamaella lignohabitans 30038069 AWJ20_979 mRNA SEC13 NC_031672.1 3096411 3097358 R AWJ20_979 complement(<3096411..>3097358) Sugiyamaella lignohabitans 30038070 AWJ20_980 mRNA TFB2 NC_031672.1 3097969 3099462 D AWJ20_980 <3097969..>3099462 Sugiyamaella lignohabitans 30038072 AWJ20_981 mRNA MRH4 NC_031672.1 3099902 3101566 R AWJ20_981 complement(<3099902..>3101566) Sugiyamaella lignohabitans 30038073 AWJ20_982 mRNA SRP72 NC_031672.1 3102243 3104318 D AWJ20_982 <3102243..>3104318 Sugiyamaella lignohabitans 30038074 AWJ20_983 mRNA NIP7 NC_031672.1 3104510 3105055 R AWJ20_983 complement(<3104510..>3105055) Sugiyamaella lignohabitans 30038075 AWJ20_984 mRNA PUS1 NC_031672.1 3105542 3106849 R AWJ20_984 complement(<3105542..>3106849) Sugiyamaella lignohabitans 30038076 AWJ20_985 mRNA NOC2 NC_031672.1 3107658 3109862 R AWJ20_985 complement(<3107658..>3109862) Sugiyamaella lignohabitans 30038077 AWJ20_986 mRNA CUZ1 NC_031672.1 3112689 3113711 D AWJ20_986 join(<3112689..3112771,3113003..>3113711) Sugiyamaella lignohabitans 30038078 AWJ20_987 mRNA TIM21 NC_031672.1 3117905 3118669 D AWJ20_987 <3117905..>3118669 Sugiyamaella lignohabitans 30038079 AWJ20_988 mRNA MNP1 NC_031672.1 3119350 3119871 R AWJ20_988 complement(<3119350..>3119871) Sugiyamaella lignohabitans 30038080 AWJ20_989 mRNA AWJ20_989 NC_031672.1 3120199 3124233 D AWJ20_989 join(<3120199..3120241,3120318..3120341,3120687..3120767,3122960..>3124233) Sugiyamaella lignohabitans 30038081 AWJ20_990 mRNA EAP1 NC_031672.1 3121116 3126323 R AWJ20_990 complement(<3121116..>3126323) Sugiyamaella lignohabitans 30038083 AWJ20_991 mRNA KRE9 NC_031672.1 3129294 3130142 D AWJ20_991 <3129294..>3130142 Sugiyamaella lignohabitans 30038084 AWJ20_992 mRNA AWJ20_992 NC_031672.1 3130551 3132017 D AWJ20_992 <3130551..>3132017 Sugiyamaella lignohabitans 30038085 AWJ20_993 mRNA KEX1 NC_031672.1 3132304 3133923 R AWJ20_993 complement(<3132304..>3133923) Sugiyamaella lignohabitans 30038086 AWJ20_994 mRNA AXL2 NC_031672.1 3135084 3137918 R AWJ20_994 complement(<3135084..>3137918) Sugiyamaella lignohabitans 30038087 AWJ20_995 mRNA BST1 NC_031672.1 3143442 3147485 D AWJ20_995 <3143442..>3147485 Sugiyamaella lignohabitans 30038088 AWJ20_996 mRNA STE2 NC_031672.1 3147722 3148894 R AWJ20_996 complement(<3147722..>3148894) Sugiyamaella lignohabitans 30038089 AWJ20_997 mRNA AWJ20_997 NC_031672.1 3153935 3154969 D AWJ20_997 <3153935..>3154969 Sugiyamaella lignohabitans 30038090 AWJ20_998 mRNA MOT2 NC_031672.1 3158164 3159909 R AWJ20_998 complement(<3158164..>3159909) Sugiyamaella lignohabitans 30038091 AWJ20_999 mRNA AWJ20_999 NC_031672.1 3161270 3162115 D AWJ20_999 <3161270..>3162115 Sugiyamaella lignohabitans 30038092 AWJ20_1000 mRNA END3 NC_031672.1 3162873 3164120 R AWJ20_1000 complement(<3162873..>3164120) Sugiyamaella lignohabitans 30032755 AWJ20_1001 mRNA ARF2 NC_031672.1 3164923 3165468 R AWJ20_1001 complement(<3164923..>3165468) Sugiyamaella lignohabitans 30032756 AWJ20_1002 mRNA VMA1 NC_031672.1 3171117 3172850 D AWJ20_1002 <3171117..>3172850 Sugiyamaella lignohabitans 30032757 AWJ20_1003 mRNA PPH21 NC_031672.1 3175209 3175943 R AWJ20_1003 complement(<3175209..>3175943) Sugiyamaella lignohabitans 30032758 AWJ20_1004 mRNA PPH21 NC_031672.1 3176032 3176490 R AWJ20_1004 complement(<3176032..>3176490) Sugiyamaella lignohabitans 30032759 AWJ20_1005 mRNA RDI1 NC_031672.1 3181694 3182314 D AWJ20_1005 <3181694..>3182314 Sugiyamaella lignohabitans 30032760 AWJ20_1006 mRNA RBS1 NC_031672.1 3182580 3184979 R AWJ20_1006 complement(<3182580..>3184979) Sugiyamaella lignohabitans 30032761 AWJ20_1007 mRNA UFD2 NC_031672.1 3185690 3189184 D AWJ20_1007 join(<3185690..3185710,3185882..>3189184) Sugiyamaella lignohabitans 30032762 AWJ20_1008 mRNA MCT1 NC_031672.1 3189445 3190536 R AWJ20_1008 complement(<3189445..>3190536) Sugiyamaella lignohabitans 30032763 AWJ20_1009 mRNA CHS7 NC_031672.1 3191592 3192584 D AWJ20_1009 <3191592..>3192584 Sugiyamaella lignohabitans 30032764 AWJ20_1010 mRNA RIA1 NC_031672.1 3193133 3197725 D AWJ20_1010 join(<3193133..3196177,3196538..>3197725) Sugiyamaella lignohabitans 30032766 AWJ20_1011 mRNA AWJ20_1011 NC_031672.1 3197762 3199243 D AWJ20_1011 <3197762..>3199243 Sugiyamaella lignohabitans 30032767 AWJ20_1012 mRNA AWJ20_1012 NC_031672.1 3199640 3202777 D AWJ20_1012 join(<3199640..3200262,3200650..3201156,3201544..3202002,3202390..>3202777) Sugiyamaella lignohabitans 30032768 AWJ20_1013 mRNA AMN1 NC_031672.1 3213915 3215813 D AWJ20_1013 <3213915..>3215813 Sugiyamaella lignohabitans 30032769 AWJ20_1014 mRNA AWJ20_1014 NC_031672.1 3219370 3220617 R AWJ20_1014 complement(<3219370..>3220617) Sugiyamaella lignohabitans 30032770 AWJ20_1015 mRNA AWJ20_1015 NC_031672.1 3221015 3221659 R AWJ20_1015 complement(<3221015..>3221659) Sugiyamaella lignohabitans 30032771 AWJ20_1016 mRNA ELO2 NC_031672.1 3221953 3222981 R AWJ20_1016 complement(<3221953..>3222981) Sugiyamaella lignohabitans 30032772 AWJ20_1017 mRNA ROM2 NC_031672.1 3224498 3228115 R AWJ20_1017 complement(<3224498..>3228115) Sugiyamaella lignohabitans 30032773 AWJ20_1018 mRNA SNT1 NC_031672.1 3235269 3241535 R AWJ20_1018 complement(join(<3235269..3241119,3241528..>3241535)) Sugiyamaella lignohabitans 30032774 AWJ20_1019 mRNA THI22 NC_031672.1 3242117 3243508 R AWJ20_1019 complement(<3242117..>3243508) Sugiyamaella lignohabitans 30032775 AWJ20_1020 mRNA STP3 NC_031672.1 3245542 3247353 D AWJ20_1020 <3245542..>3247353 Sugiyamaella lignohabitans 30032777 AWJ20_1021 mRNA AWJ20_1021 NC_031672.1 3250490 3251152 R AWJ20_1021 complement(<3250490..>3251152) Sugiyamaella lignohabitans 30032778 AWJ20_1022 mRNA EXG1 NC_031672.1 3257423 3259190 D AWJ20_1022 join(<3257423..3257484,3258005..>3259190) Sugiyamaella lignohabitans 30032779 AWJ20_1023 mRNA NUD1 NC_031672.1 3259462 3263217 R AWJ20_1023 complement(<3259462..>3263217) Sugiyamaella lignohabitans 30032780 AWJ20_1024 mRNA PCS60 NC_031672.1 3270117 3272036 D AWJ20_1024 <3270117..>3272036 Sugiyamaella lignohabitans 30032781 AWJ20_1025 mRNA DUR1,2 NC_031672.1 3272207 3274309 R AWJ20_1025 complement(<3272207..>3274309) Sugiyamaella lignohabitans 30032782 AWJ20_1027 mRNA AWJ20_1027 NC_031672.1 3277141 3279240 D AWJ20_1027 <3277141..>3279240 Sugiyamaella lignohabitans 30032784 AWJ20_1029 mRNA AWJ20_1029 NC_031672.1 3280045 3282432 D AWJ20_1029 <3280045..>3282432 Sugiyamaella lignohabitans 30032786 AWJ20_1030 mRNA KEL2 NC_031672.1 3282566 3284674 R AWJ20_1030 complement(<3282566..>3284674) Sugiyamaella lignohabitans 30032788 AWJ20_1031 mRNA AWJ20_1031 NC_031672.1 3286168 3289005 D AWJ20_1031 <3286168..>3289005 Sugiyamaella lignohabitans 30032789 AWJ20_1032 mRNA AWJ20_1032 NC_031672.1 3289357 3290073 D AWJ20_1032 <3289357..>3290073 Sugiyamaella lignohabitans 30032790 AWJ20_1033 mRNA ODE1 NC_031672.1 3290217 3291449 R AWJ20_1033 complement(<3290217..>3291449) Sugiyamaella lignohabitans 30032791 AWJ20_1034 mRNA RRP43 NC_031672.1 3294348 3295235 R AWJ20_1034 complement(<3294348..>3295235) Sugiyamaella lignohabitans 30032792 AWJ20_1035 mRNA TIM13 NC_031672.1 3295581 3295793 D AWJ20_1035 <3295581..>3295793 Sugiyamaella lignohabitans 30032793 AWJ20_1036 mRNA RBK1 NC_031672.1 3296249 3297190 D AWJ20_1036 <3296249..>3297190 Sugiyamaella lignohabitans 30032794 AWJ20_1037 mRNA UBP12 NC_031672.1 3297381 3299912 R AWJ20_1037 complement(<3297381..>3299912) Sugiyamaella lignohabitans 30032795 AWJ20_1038 mRNA UBP12 NC_031672.1 3300118 3302301 R AWJ20_1038 complement(<3300118..>3302301) Sugiyamaella lignohabitans 30032796 AWJ20_1039 mRNA AWJ20_1039 NC_031672.1 3308516 3310177 D AWJ20_1039 <3308516..>3310177 Sugiyamaella lignohabitans 30032797 AWJ20_1040 mRNA HUL4 NC_031672.1 3311074 3313935 D AWJ20_1040 <3311074..>3313935 Sugiyamaella lignohabitans 30032799 AWJ20_1041 mRNA SOL1 NC_031672.1 3318069 3318983 D AWJ20_1041 <3318069..>3318983 Sugiyamaella lignohabitans 30032800 AWJ20_1042 mRNA SRS2 NC_031672.1 3319465 3321984 R AWJ20_1042 complement(<3319465..>3321984) Sugiyamaella lignohabitans 30032801 AWJ20_1043 mRNA MSH2 NC_031672.1 3322226 3325102 D AWJ20_1043 <3322226..>3325102 Sugiyamaella lignohabitans 30032802 AWJ20_1044 mRNA AWJ20_1044 NC_031672.1 3325169 3327517 R AWJ20_1044 complement(<3325169..>3327517) Sugiyamaella lignohabitans 30032803 AWJ20_1045 mRNA AWJ20_1045 NC_031672.1 3328183 3329025 R AWJ20_1045 complement(<3328183..>3329025) Sugiyamaella lignohabitans 30032804 AWJ20_1046 mRNA FEX2 NC_031672.1 3330039 3331277 D AWJ20_1046 <3330039..>3331277 Sugiyamaella lignohabitans 30032805 AWJ20_1047 mRNA AWJ20_1047 NC_031672.1 3332434 3334089 D AWJ20_1047 <3332434..>3334089 Sugiyamaella lignohabitans 30032806 AWJ20_1048 mRNA RTG1 NC_031672.1 3338630 3340417 D AWJ20_1048 <3338630..>3340417 Sugiyamaella lignohabitans 30032807 AWJ20_1049 mRNA EMI5 NC_031672.1 3341988 3342461 R AWJ20_1049 complement(<3341988..>3342461) Sugiyamaella lignohabitans 30032808 AWJ20_1050 mRNA ATG18 NC_031672.1 3344004 3345086 D AWJ20_1050 <3344004..>3345086 Sugiyamaella lignohabitans 30032810 AWJ20_1051 mRNA COX23 NC_031672.1 3345420 3345713 D AWJ20_1051 <3345420..>3345713 Sugiyamaella lignohabitans 30032811 AWJ20_1052 mRNA AWJ20_1052 NC_031672.1 3345999 3347678 R AWJ20_1052 complement(<3345999..>3347678) Sugiyamaella lignohabitans 30032812 AWJ20_1053 mRNA AWJ20_1053 NC_031672.1 3350016 3353159 R AWJ20_1053 complement(join(<3350016..3350023,3350094..3352758,3352845..>3353159)) Sugiyamaella lignohabitans 30032813 AWJ20_1054 mRNA EHD3 NC_031672.1 3353748 3354650 R AWJ20_1054 complement(<3353748..>3354650) Sugiyamaella lignohabitans 30032814 AWJ20_1055 mRNA TOM70 NC_031672.1 3355304 3357169 R AWJ20_1055 complement(<3355304..>3357169) Sugiyamaella lignohabitans 30032815 AWJ20_1056 mRNA CAT2 NC_031672.1 3362467 3364380 D AWJ20_1056 <3362467..>3364380 Sugiyamaella lignohabitans 30032816 AWJ20_1057 mRNA EAF7 NC_031672.1 3364563 3365957 R AWJ20_1057 complement(<3364563..>3365957) Sugiyamaella lignohabitans 30032817 AWJ20_1058 mRNA AWJ20_1058 NC_031672.1 3367207 3369519 R AWJ20_1058 complement(<3367207..>3369519) Sugiyamaella lignohabitans 30032818 AWJ20_1059 mRNA SPT5 NC_031672.1 3370730 3373084 R AWJ20_1059 complement(<3370730..>3373084) Sugiyamaella lignohabitans 30032819 AWJ20_1060 mRNA GPH1 NC_031672.1 3378448 3381129 D AWJ20_1060 <3378448..>3381129 Sugiyamaella lignohabitans 30032821 AWJ20_1063 mRNA CCT2 NC_031672.1 3382779 3384236 D AWJ20_1063 <3382779..>3384236 Sugiyamaella lignohabitans 30032824 AWJ20_1064 mRNA ATG20 NC_031672.1 3386690 3388498 D AWJ20_1064 <3386690..>3388498 Sugiyamaella lignohabitans 30032825 AWJ20_1065 mRNA LOT6 NC_031672.1 3388717 3389325 R AWJ20_1065 complement(<3388717..>3389325) Sugiyamaella lignohabitans 30032826 AWJ20_1066 mRNA ARP9 NC_031672.1 3389614 3392241 R AWJ20_1066 complement(join(<3389614..3390938,3391554..>3392241)) Sugiyamaella lignohabitans 30032827 AWJ20_1067 mRNA AWJ20_1067 NC_031672.1 3392817 3393101 R AWJ20_1067 complement(<3392817..>3393101) Sugiyamaella lignohabitans 30032828 AWJ20_1068 mRNA ECO1 NC_031672.1 3394442 3395701 D AWJ20_1068 <3394442..>3395701 Sugiyamaella lignohabitans 30032829 AWJ20_1069 mRNA ABZ1 NC_031672.1 3396981 3399335 R AWJ20_1069 complement(<3396981..>3399335) Sugiyamaella lignohabitans 30032830 AWJ20_1070 mRNA MRPL27 NC_031672.1 3400047 3400463 D AWJ20_1070 <3400047..>3400463 Sugiyamaella lignohabitans 30032832 AWJ20_1071 mRNA AWJ20_1071 NC_031672.1 3402975 3404099 D AWJ20_1071 <3402975..>3404099 Sugiyamaella lignohabitans 30032833 AWJ20_1072 mRNA PIK1 NC_031672.1 3404351 3407488 R AWJ20_1072 complement(<3404351..>3407488) Sugiyamaella lignohabitans 30032834 AWJ20_1073 mRNA AWJ20_1073 NC_031672.1 3412715 3415354 R AWJ20_1073 complement(<3412715..>3415354) Sugiyamaella lignohabitans 30032835 AWJ20_1074 mRNA VPS62 NC_031672.1 3417223 3418656 D AWJ20_1074 <3417223..>3418656 Sugiyamaella lignohabitans 30032836 AWJ20_1075 mRNA SNF3 NC_031672.1 3419210 3420784 R AWJ20_1075 complement(<3419210..>3420784) Sugiyamaella lignohabitans 30032837 AWJ20_1076 mRNA AWJ20_1076 NC_031672.1 3425536 3426597 D AWJ20_1076 <3425536..>3426597 Sugiyamaella lignohabitans 30032838 AWJ20_1077 mRNA AWJ20_1077 NC_031672.1 3427193 3430606 R AWJ20_1077 complement(<3427193..>3430606) Sugiyamaella lignohabitans 30032839 AWJ20_1078 mRNA SLI15 NC_031672.1 3431575 3434760 D AWJ20_1078 <3431575..>3434760 Sugiyamaella lignohabitans 30032840 AWJ20_1079 mRNA CNS1 NC_031672.1 3434860 3436032 R AWJ20_1079 complement(<3434860..>3436032) Sugiyamaella lignohabitans 30032841 AWJ20_1080 mRNA AWJ20_1080 NC_031672.1 3436422 3438761 R AWJ20_1080 complement(<3436422..>3438761) Sugiyamaella lignohabitans 30032843 AWJ20_1081 mRNA SRB8 NC_031672.1 3438988 3441453 R AWJ20_1081 complement(<3438988..>3441453) Sugiyamaella lignohabitans 30032844 AWJ20_1082 mRNA AWJ20_1082 NC_031672.1 3442944 3443234 D AWJ20_1082 <3442944..>3443234 Sugiyamaella lignohabitans 30032845 AWJ20_1083 mRNA POL30 NC_031672.1 3443727 3444152 R AWJ20_1083 complement(<3443727..>3444152) Sugiyamaella lignohabitans 30032846 AWJ20_1084 mRNA MCM6 NC_031672.1 3445026 3447983 R AWJ20_1084 complement(<3445026..>3447983) Sugiyamaella lignohabitans 30032847 AWJ20_1085 mRNA TMA10 NC_031672.1 3449216 3449503 R AWJ20_1085 complement(<3449216..>3449503) Sugiyamaella lignohabitans 30032848 AWJ20_1086 mRNA CKB2 NC_031672.1 3453443 3453865 D AWJ20_1086 <3453443..>3453865 Sugiyamaella lignohabitans 30032849 AWJ20_1087 mRNA AWJ20_1087 NC_031672.1 3454858 3456588 D AWJ20_1087 <3454858..>3456588 Sugiyamaella lignohabitans 30032850 AWJ20_1088 mRNA ARO8 NC_031672.1 3456975 3458468 R AWJ20_1088 complement(<3456975..>3458468) Sugiyamaella lignohabitans 30032851 AWJ20_1089 mRNA CDH1 NC_031672.1 3460751 3462055 R AWJ20_1089 complement(<3460751..>3462055) Sugiyamaella lignohabitans 30032852 AWJ20_1090 mRNA SHS1 NC_031672.1 3464974 3465480 D AWJ20_1090 <3464974..>3465480 Sugiyamaella lignohabitans 30032854 AWJ20_1091 mRNA MSW1 NC_031672.1 3465823 3466962 R AWJ20_1091 complement(<3465823..>3466962) Sugiyamaella lignohabitans 30032855 AWJ20_1092 mRNA AWJ20_1092 NC_031672.1 3468062 3468802 D AWJ20_1092 <3468062..>3468802 Sugiyamaella lignohabitans 30032856 AWJ20_1093 mRNA CYC2 NC_031672.1 3468924 3470525 R AWJ20_1093 complement(<3468924..>3470525) Sugiyamaella lignohabitans 30032857 AWJ20_1094 mRNA CIA1 NC_031672.1 3471697 3472113 D AWJ20_1094 <3471697..>3472113 Sugiyamaella lignohabitans 30032858 AWJ20_1095 mRNA CIA1 NC_031672.1 3472242 3472808 D AWJ20_1095 <3472242..>3472808 Sugiyamaella lignohabitans 30032859 AWJ20_1096 mRNA SWD1 NC_031672.1 3472957 3473883 R AWJ20_1096 complement(<3472957..>3473883) Sugiyamaella lignohabitans 30032860 AWJ20_1097 mRNA ESF1 NC_031672.1 3475079 3477085 D AWJ20_1097 <3475079..>3477085 Sugiyamaella lignohabitans 30032861 AWJ20_1098 mRNA RTS1 NC_031672.1 3477299 3479747 R AWJ20_1098 complement(join(<3477299..3479553,3479726..>3479747)) Sugiyamaella lignohabitans 30032862 AWJ20_1099 mRNA MYO2 NC_031672.1 3481568 3485965 R AWJ20_1099 complement(<3481568..>3485965) Sugiyamaella lignohabitans 30032863 AWJ20_1100 mRNA GCD2 NC_031672.1 3491835 3493391 D AWJ20_1100 <3491835..>3493391 Sugiyamaella lignohabitans 30032866 AWJ20_1101 mRNA GCV3 NC_031672.1 3495174 3495728 D AWJ20_1101 <3495174..>3495728 Sugiyamaella lignohabitans 30032867 AWJ20_1102 mRNA AWJ20_1102 NC_031672.1 3497038 3499071 D AWJ20_1102 <3497038..>3499071 Sugiyamaella lignohabitans 30032868 AWJ20_1103 mRNA FLC3 NC_031672.1 3501440 3504289 R AWJ20_1103 complement(<3501440..>3504289) Sugiyamaella lignohabitans 30032869 AWJ20_1104 mRNA BUB3 NC_031672.1 3506365 3507381 R AWJ20_1104 complement(<3506365..>3507381) Sugiyamaella lignohabitans 30032870 AWJ20_1105 mRNA ERG5 NC_031672.1 3508404 3509993 D AWJ20_1105 <3508404..>3509993 Sugiyamaella lignohabitans 30032871 AWJ20_1106 mRNA BIO3 NC_031672.1 3512333 3513148 R AWJ20_1106 complement(<3512333..>3513148) Sugiyamaella lignohabitans 30032872 AWJ20_1107 mRNA PHO11 NC_031672.1 3514294 3515724 R AWJ20_1107 complement(<3514294..>3515724) Sugiyamaella lignohabitans 30032873 AWJ20_1108 mRNA AWJ20_1108 NC_031672.1 3517634 3518569 D AWJ20_1108 <3517634..>3518569 Sugiyamaella lignohabitans 30032874 AWJ20_1109 mRNA RPC31 NC_031672.1 3521049 3521405 R AWJ20_1109 complement(<3521049..>3521405) Sugiyamaella lignohabitans 30032875 AWJ20_1110 mRNA AWJ20_1110 NC_031672.1 3522212 3523411 D AWJ20_1110 <3522212..>3523411 Sugiyamaella lignohabitans 30032877 AWJ20_1111 mRNA VBA5 NC_031672.1 3524520 3526265 D AWJ20_1111 <3524520..>3526265 Sugiyamaella lignohabitans 30032878 AWJ20_1113 mRNA SAM50 NC_031672.1 3528651 3530012 R AWJ20_1113 complement(<3528651..>3530012) Sugiyamaella lignohabitans 30032880 AWJ20_1115 mRNA AWJ20_1115 NC_031672.1 3535441 3537153 R AWJ20_1115 complement(<3535441..>3537153) Sugiyamaella lignohabitans 30032882 AWJ20_1116 mRNA AWJ20_1116 NC_031672.1 3538225 3539193 D AWJ20_1116 <3538225..>3539193 Sugiyamaella lignohabitans 30032883 AWJ20_1118 mRNA ERV1 NC_031672.1 3540364 3540786 D AWJ20_1118 <3540364..>3540786 Sugiyamaella lignohabitans 30032885 AWJ20_1119 mRNA VRP1 NC_031672.1 3541015 3542904 R AWJ20_1119 complement(<3541015..>3542904) Sugiyamaella lignohabitans 30032886 AWJ20_1120 mRNA FKS1 NC_031672.1 3544428 3550019 D AWJ20_1120 <3544428..>3550019 Sugiyamaella lignohabitans 30032888 AWJ20_1121 mRNA MSP1 NC_031672.1 3550212 3550871 R AWJ20_1121 complement(<3550212..>3550871) Sugiyamaella lignohabitans 30032889 AWJ20_1122 mRNA MSP1 NC_031672.1 3551207 3551539 R AWJ20_1122 complement(<3551207..>3551539) Sugiyamaella lignohabitans 30032890 AWJ20_1124 mRNA TPS1 NC_031672.1 3554460 3555593 D AWJ20_1124 <3554460..>3555593 Sugiyamaella lignohabitans 30032892 AWJ20_1125 mRNA TRP2 NC_031672.1 3555855 3557420 R AWJ20_1125 complement(<3555855..>3557420) Sugiyamaella lignohabitans 30032893 AWJ20_1126 mRNA PTC2 NC_031672.1 3559515 3560849 D AWJ20_1126 <3559515..>3560849 Sugiyamaella lignohabitans 30032894 AWJ20_1127 mRNA AWJ20_1127 NC_031672.1 3566732 3567574 R AWJ20_1127 complement(<3566732..>3567574) Sugiyamaella lignohabitans 30032895 AWJ20_1128 mRNA OSH7 NC_031672.1 3569761 3571221 R AWJ20_1128 complement(<3569761..>3571221) Sugiyamaella lignohabitans 30032896 AWJ20_1129 mRNA HGH1 NC_031672.1 3576445 3577284 D AWJ20_1129 <3576445..>3577284 Sugiyamaella lignohabitans 30032897 AWJ20_1130 mRNA AWJ20_1130 NC_031672.1 3577350 3578324 R AWJ20_1130 complement(<3577350..>3578324) Sugiyamaella lignohabitans 30032899 AWJ20_1131 mRNA DDI2 NC_031672.1 3579369 3580079 R AWJ20_1131 complement(<3579369..>3580079) Sugiyamaella lignohabitans 30032900 AWJ20_1132 mRNA UGP1 NC_031672.1 3584484 3585989 D AWJ20_1132 <3584484..>3585989 Sugiyamaella lignohabitans 30032901 AWJ20_1134 mRNA RNH1 NC_031672.1 3587510 3588325 R AWJ20_1134 complement(<3587510..>3588325) Sugiyamaella lignohabitans 30032903 AWJ20_1135 mRNA YPP1 NC_031672.1 3590197 3592884 D AWJ20_1135 <3590197..>3592884 Sugiyamaella lignohabitans 30032904 AWJ20_1136 mRNA GAD2 NC_031672.1 3594888 3596303 R AWJ20_1136 complement(<3594888..>3596303) Sugiyamaella lignohabitans 30032905 AWJ20_1137 mRNA POL92 NC_031672.1 3597351 3600326 R AWJ20_1137 complement(<3597351..>3600326) Sugiyamaella lignohabitans 30032906 AWJ20_1139 mRNA RAD26 NC_031672.1 3602998 3606579 R AWJ20_1139 complement(<3602998..>3606579) Sugiyamaella lignohabitans 30032908 AWJ20_1140 mRNA POT1 NC_031672.1 3607747 3608973 D AWJ20_1140 <3607747..>3608973 Sugiyamaella lignohabitans 30032910 AWJ20_1141 mRNA AWJ20_1141 NC_031672.1 3609156 3610046 R AWJ20_1141 complement(<3609156..>3610046) Sugiyamaella lignohabitans 30032911 AWJ20_1142 mRNA AWJ20_1142 NC_031672.1 3610837 3613164 R AWJ20_1142 complement(<3610837..>3613164) Sugiyamaella lignohabitans 30032912 AWJ20_1143 mRNA ARO1 NC_031672.1 3614702 3617296 D AWJ20_1143 <3614702..>3617296 Sugiyamaella lignohabitans 30032913 AWJ20_1144 mRNA AWJ20_1144 NC_031672.1 3618288 3619274 D AWJ20_1144 <3618288..>3619274 Sugiyamaella lignohabitans 30032914 AWJ20_1145 mRNA AWJ20_1145 NC_031672.1 3620188 3621492 D AWJ20_1145 <3620188..>3621492 Sugiyamaella lignohabitans 30032915 AWJ20_1146 mRNA AWJ20_1146 NC_031672.1 3621741 3622838 R AWJ20_1146 complement(<3621741..>3622838) Sugiyamaella lignohabitans 30032916 AWJ20_1147 mRNA AWJ20_1147 NC_031672.1 3624846 3626435 R AWJ20_1147 complement(<3624846..>3626435) Sugiyamaella lignohabitans 30032917 AWJ20_1148 mRNA AWJ20_1148 NC_031672.1 3624991 3625344 D AWJ20_1148 <3624991..>3625344 Sugiyamaella lignohabitans 30032918 AWJ20_1149 mRNA GAP1 NC_031672.1 3629161 3630783 R AWJ20_1149 complement(<3629161..>3630783) Sugiyamaella lignohabitans 30032919 AWJ20_1150 mRNA AWJ20_1150 NC_031672.1 3632338 3633720 D AWJ20_1150 <3632338..>3633720 Sugiyamaella lignohabitans 30032921 AWJ20_1151 mRNA FRQ1 NC_031672.1 3633952 3634524 R AWJ20_1151 complement(<3633952..>3634524) Sugiyamaella lignohabitans 30032922 AWJ20_1152 mRNA AWJ20_1152 NC_031672.1 3635864 3637162 R AWJ20_1152 complement(<3635864..>3637162) Sugiyamaella lignohabitans 30032923 AWJ20_1153 mRNA SEC15 NC_031672.1 3638036 3640648 D AWJ20_1153 <3638036..>3640648 Sugiyamaella lignohabitans 30032924 AWJ20_1154 mRNA BCK1 NC_031672.1 3641606 3642016 R AWJ20_1154 complement(<3641606..>3642016) Sugiyamaella lignohabitans 30032925 AWJ20_1155 mRNA BCK1 NC_031672.1 3642186 3644999 R AWJ20_1155 complement(<3642186..>3644999) Sugiyamaella lignohabitans 30032926 AWJ20_1156 mRNA AWJ20_1156 NC_031672.1 3645225 3647564 R AWJ20_1156 complement(<3645225..>3647564) Sugiyamaella lignohabitans 30032927 AWJ20_1157 mRNA MRPL49 NC_031672.1 3648271 3649008 R AWJ20_1157 complement(<3648271..>3649008) Sugiyamaella lignohabitans 30032928 AWJ20_1158 mRNA FZO1 NC_031672.1 3649470 3652370 D AWJ20_1158 <3649470..>3652370 Sugiyamaella lignohabitans 30032929 AWJ20_1159 mRNA AWJ20_1159 NC_031672.1 3652598 3653233 R AWJ20_1159 complement(<3652598..>3653233) Sugiyamaella lignohabitans 30032930 AWJ20_1160 mRNA AWJ20_1160 NC_031672.1 3653524 3654804 R AWJ20_1160 complement(<3653524..>3654804) Sugiyamaella lignohabitans 30032932 AWJ20_1161 mRNA ELP4 NC_031672.1 3655196 3656764 D AWJ20_1161 <3655196..>3656764 Sugiyamaella lignohabitans 30032933 AWJ20_1162 mRNA MET30 NC_031672.1 3657230 3659446 D AWJ20_1162 <3657230..>3659446 Sugiyamaella lignohabitans 30032934 AWJ20_1163 mRNA CHS2 NC_031672.1 3659662 3662493 R AWJ20_1163 complement(<3659662..>3662493) Sugiyamaella lignohabitans 30032935 AWJ20_1164 mRNA SCO1 NC_031672.1 3664753 3665751 D AWJ20_1164 <3664753..>3665751 Sugiyamaella lignohabitans 30032936 AWJ20_1165 mRNA AIM2 NC_031672.1 3665987 3666875 R AWJ20_1165 complement(join(<3665987..3666774,3666827..>3666875)) Sugiyamaella lignohabitans 30032937 AWJ20_1166 mRNA YAR1 NC_031672.1 3668445 3668996 D AWJ20_1166 <3668445..>3668996 Sugiyamaella lignohabitans 30032938 AWJ20_1167 mRNA COM2 NC_031672.1 3681765 3683477 D AWJ20_1167 <3681765..>3683477 Sugiyamaella lignohabitans 30032939 AWJ20_1168 mRNA ATG1 NC_031672.1 3686938 3689553 D AWJ20_1168 <3686938..>3689553 Sugiyamaella lignohabitans 30032940 AWJ20_1169 mRNA NSR1 NC_031672.1 3690408 3691727 D AWJ20_1169 <3690408..>3691727 Sugiyamaella lignohabitans 30032941 AWJ20_1170 mRNA AWJ20_1170 NC_031672.1 3692193 3693962 D AWJ20_1170 <3692193..>3693962 Sugiyamaella lignohabitans 30032943 AWJ20_1171 mRNA UTP22 NC_031672.1 3694014 3697646 R AWJ20_1171 complement(<3694014..>3697646) Sugiyamaella lignohabitans 30032944 AWJ20_1172 mRNA YLH47 NC_031672.1 3698294 3699990 D AWJ20_1172 join(<3698294..3698351,3698438..>3699990) Sugiyamaella lignohabitans 30032945 AWJ20_1173 mRNA DUT1 NC_031672.1 3700318 3700761 R AWJ20_1173 complement(<3700318..>3700761) Sugiyamaella lignohabitans 30032946 AWJ20_1174 mRNA MDM31 NC_031672.1 3704147 3706240 D AWJ20_1174 <3704147..>3706240 Sugiyamaella lignohabitans 30032947 AWJ20_1175 mRNA SPP2 NC_031672.1 3706396 3707745 R AWJ20_1175 complement(<3706396..>3707745) Sugiyamaella lignohabitans 30032948 AWJ20_1176 mRNA SHE9 NC_031672.1 3708104 3709432 D AWJ20_1176 <3708104..>3709432 Sugiyamaella lignohabitans 30032949 AWJ20_1177 mRNA RPT3 NC_031672.1 3710688 3711962 R AWJ20_1177 complement(<3710688..>3711962) Sugiyamaella lignohabitans 30032950 AWJ20_1178 mRNA AWJ20_1178 NC_031672.1 3712513 3713988 R AWJ20_1178 complement(<3712513..>3713988) Sugiyamaella lignohabitans 30032951 AWJ20_1179 mRNA SGM1 NC_031672.1 3715461 3718538 D AWJ20_1179 <3715461..>3718538 Sugiyamaella lignohabitans 30032952 AWJ20_1180 mRNA XPT1 NC_031672.1 3718860 3719477 R AWJ20_1180 complement(<3718860..>3719477) Sugiyamaella lignohabitans 30032954 AWJ20_1181 mRNA UTP5 NC_031672.1 3720160 3722319 R AWJ20_1181 complement(<3720160..>3722319) Sugiyamaella lignohabitans 30032955 AWJ20_1182 mRNA NCB2 NC_031672.1 3723730 3724194 D AWJ20_1182 <3723730..>3724194 Sugiyamaella lignohabitans 30032956 AWJ20_1183 mRNA NMD5 NC_031672.1 3724659 3726926 R AWJ20_1183 complement(<3724659..>3726926) Sugiyamaella lignohabitans 30032957 AWJ20_1184 mRNA NMD5 NC_031672.1 3727154 3727954 R AWJ20_1184 complement(<3727154..>3727954) Sugiyamaella lignohabitans 30032958 AWJ20_1185 mRNA SMP3 NC_031672.1 3730168 3731964 D AWJ20_1185 <3730168..>3731964 Sugiyamaella lignohabitans 30032959 AWJ20_1186 mRNA HIS5 NC_031672.1 3732129 3733115 R AWJ20_1186 complement(<3732129..>3733115) Sugiyamaella lignohabitans 30032960 AWJ20_1187 mRNA NUP159 NC_031672.1 3734031 3738594 D AWJ20_1187 join(<3734031..3734087,3734146..>3738594) Sugiyamaella lignohabitans 30032961 AWJ20_1188 mRNA AWJ20_1188 NC_031672.1 3742949 3743407 D AWJ20_1188 <3742949..>3743407 Sugiyamaella lignohabitans 30032962 AWJ20_1189 mRNA RPB7 NC_031672.1 3745204 3745623 R AWJ20_1189 complement(<3745204..>3745623) Sugiyamaella lignohabitans 30032963 AWJ20_1190 mRNA AWJ20_1190 NC_031672.1 3746735 3747553 D AWJ20_1190 <3746735..>3747553 Sugiyamaella lignohabitans 30032965 AWJ20_1191 mRNA AWJ20_1191 NC_031672.1 3747650 3747970 D AWJ20_1191 <3747650..>3747970 Sugiyamaella lignohabitans 30032966 AWJ20_1192 mRNA AWJ20_1192 NC_031672.1 3748246 3749403 D AWJ20_1192 <3748246..>3749403 Sugiyamaella lignohabitans 30032967 AWJ20_1193 mRNA AIM18 NC_031672.1 3749585 3750481 R AWJ20_1193 complement(<3749585..>3750481) Sugiyamaella lignohabitans 30032968 AWJ20_1194 mRNA RRB1 NC_031672.1 3757948 3759528 D AWJ20_1194 <3757948..>3759528 Sugiyamaella lignohabitans 30032969 AWJ20_1195 mRNA AWJ20_1195 NC_031672.1 3762461 3765967 R AWJ20_1195 complement(<3762461..>3765967) Sugiyamaella lignohabitans 30032970 AWJ20_1196 mRNA PEX6 NC_031672.1 3773428 3774606 D AWJ20_1196 <3773428..>3774606 Sugiyamaella lignohabitans 30032971 AWJ20_1197 mRNA PEX6 NC_031672.1 3774699 3777347 D AWJ20_1197 <3774699..>3777347 Sugiyamaella lignohabitans 30032972 AWJ20_1198 mRNA AWJ20_1198 NC_031672.1 3776324 3776563 R AWJ20_1198 complement(<3776324..>3776563) Sugiyamaella lignohabitans 30032973 AWJ20_1199 mRNA AWJ20_1199 NC_031672.1 3777909 3778628 D AWJ20_1199 <3777909..>3778628 Sugiyamaella lignohabitans 30032974 AWJ20_1200 mRNA MAM33 NC_031672.1 3779055 3779900 R AWJ20_1200 complement(<3779055..>3779900) Sugiyamaella lignohabitans 30032977 AWJ20_1201 mRNA CLB4 NC_031672.1 3780470 3782260 R AWJ20_1201 complement(<3780470..>3782260) Sugiyamaella lignohabitans 30032978 AWJ20_1202 mRNA AWJ20_1202 NC_031672.1 3791855 3792763 D AWJ20_1202 <3791855..>3792763 Sugiyamaella lignohabitans 30032979 AWJ20_1203 mRNA NSI1 NC_031672.1 3795906 3798137 D AWJ20_1203 <3795906..>3798137 Sugiyamaella lignohabitans 30032980 AWJ20_1204 mRNA AWJ20_1204 NC_031672.1 3798633 3799103 D AWJ20_1204 <3798633..>3799103 Sugiyamaella lignohabitans 30032981 AWJ20_1205 mRNA RPS11A NC_031672.1 3798663 3798896 R AWJ20_1205 complement(<3798663..>3798896) Sugiyamaella lignohabitans 30032982 AWJ20_1206 mRNA PBP2 NC_031672.1 3803019 3804206 D AWJ20_1206 <3803019..>3804206 Sugiyamaella lignohabitans 30032983 AWJ20_1207 mRNA NQM1 NC_031672.1 3808486 3809680 D AWJ20_1207 join(<3808486..3808546,3808782..>3809680) Sugiyamaella lignohabitans 30032984 AWJ20_1208 mRNA URA4 NC_031672.1 3811863 3812912 D AWJ20_1208 <3811863..>3812912 Sugiyamaella lignohabitans 30032985 AWJ20_1209 mRNA AWJ20_1209 NC_031672.1 3812984 3814627 R AWJ20_1209 complement(<3812984..>3814627) Sugiyamaella lignohabitans 30032986 AWJ20_1210 mRNA AWJ20_1210 NC_031672.1 3815010 3817226 R AWJ20_1210 complement(<3815010..>3817226) Sugiyamaella lignohabitans 30032988 AWJ20_1211 mRNA AWJ20_1211 NC_031672.1 3817713 3819200 D AWJ20_1211 <3817713..>3819200 Sugiyamaella lignohabitans 30032989 AWJ20_1212 mRNA AWJ20_1212 NC_031672.1 3819298 3823311 R AWJ20_1212 complement(<3819298..>3823311) Sugiyamaella lignohabitans 30032990 AWJ20_1213 mRNA AWJ20_1213 NC_031672.1 3823430 3824857 R AWJ20_1213 complement(<3823430..>3824857) Sugiyamaella lignohabitans 30032991 AWJ20_1214 mRNA OYE2 NC_031672.1 3826412 3827506 R AWJ20_1214 complement(<3826412..>3827506) Sugiyamaella lignohabitans 30032992 AWJ20_1215 mRNA RPN13 NC_031672.1 3828177 3828689 D AWJ20_1215 <3828177..>3828689 Sugiyamaella lignohabitans 30032993 AWJ20_1216 mRNA NUM1 NC_031672.1 3830841 3838517 D AWJ20_1216 <3830841..>3838517 Sugiyamaella lignohabitans 30032994 AWJ20_1217 mRNA PEP4 NC_031672.1 3838762 3840384 R AWJ20_1217 complement(<3838762..>3840384) Sugiyamaella lignohabitans 30032995 AWJ20_1218 mRNA HLJ1 NC_031672.1 3843047 3844129 R AWJ20_1218 complement(<3843047..>3844129) Sugiyamaella lignohabitans 30032996 AWJ20_1219 mRNA POL3 NC_031672.1 3846874 3849612 D AWJ20_1219 <3846874..>3849612 Sugiyamaella lignohabitans 30032997 AWJ20_1220 mRNA HDA1 NC_031672.1 3849789 3852896 R AWJ20_1220 complement(<3849789..>3852896) Sugiyamaella lignohabitans 30032999 AWJ20_1221 mRNA AWJ20_1221 NC_031672.1 3854888 3855181 D AWJ20_1221 <3854888..>3855181 Sugiyamaella lignohabitans 30033000 AWJ20_1222 mRNA VPS52 NC_031672.1 3858054 3860120 D AWJ20_1222 <3858054..>3860120 Sugiyamaella lignohabitans 30033001 AWJ20_1223 mRNA AWJ20_1223 NC_031672.1 3860658 3861548 D AWJ20_1223 <3860658..>3861548 Sugiyamaella lignohabitans 30033002 AWJ20_1224 mRNA AWJ20_1224 NC_031672.1 3861623 3861919 R AWJ20_1224 complement(<3861623..>3861919) Sugiyamaella lignohabitans 30033003 AWJ20_1225 mRNA GEM1 NC_031672.1 3862934 3864922 D AWJ20_1225 <3862934..>3864922 Sugiyamaella lignohabitans 30033004 AWJ20_1226 mRNA ZDS1 NC_031672.1 3865185 3869252 R AWJ20_1226 complement(<3865185..>3869252) Sugiyamaella lignohabitans 30033005 AWJ20_1227 mRNA TRM10 NC_031672.1 3870703 3871764 R AWJ20_1227 complement(<3870703..>3871764) Sugiyamaella lignohabitans 30033006 AWJ20_1228 mRNA AGP3 NC_031672.1 3873260 3874612 D AWJ20_1228 <3873260..>3874612 Sugiyamaella lignohabitans 30033007 AWJ20_1229 mRNA DOT5 NC_031672.1 3875447 3876175 D AWJ20_1229 <3875447..>3876175 Sugiyamaella lignohabitans 30033008 AWJ20_1230 mRNA NAS2 NC_031672.1 3877828 3878376 D AWJ20_1230 <3877828..>3878376 Sugiyamaella lignohabitans 30033010 AWJ20_1231 mRNA ASG1 NC_031672.1 3880469 3883471 D AWJ20_1231 <3880469..>3883471 Sugiyamaella lignohabitans 30033011 AWJ20_1232 mRNA SRP68 NC_031672.1 3884362 3886197 D AWJ20_1232 <3884362..>3886197 Sugiyamaella lignohabitans 30033012 AWJ20_1233 mRNA REX2 NC_031672.1 3886845 3887246 D AWJ20_1233 <3886845..>3887246 Sugiyamaella lignohabitans 30033013 AWJ20_1234 mRNA AWJ20_1234 NC_031672.1 3887348 3888355 R AWJ20_1234 complement(<3887348..>3888355) Sugiyamaella lignohabitans 30033014 AWJ20_1235 mRNA PEX13 NC_031672.1 3888755 3889957 R AWJ20_1235 complement(<3888755..>3889957) Sugiyamaella lignohabitans 30033015 AWJ20_1236 mRNA AWJ20_1236 NC_031672.1 3891121 3892008 D AWJ20_1236 <3891121..>3892008 Sugiyamaella lignohabitans 30033016 AWJ20_1237 mRNA PLC1 NC_031672.1 3893135 3896302 D AWJ20_1237 <3893135..>3896302 Sugiyamaella lignohabitans 30033017 AWJ20_1238 mRNA ENP1 NC_031672.1 3896440 3897792 R AWJ20_1238 complement(<3896440..>3897792) Sugiyamaella lignohabitans 30033018 AWJ20_1239 mRNA SRM1 NC_031672.1 3898300 3899823 D AWJ20_1239 <3898300..>3899823 Sugiyamaella lignohabitans 30033019 AWJ20_1240 mRNA PEP1 NC_031672.1 3900071 3901687 R AWJ20_1240 complement(<3900071..>3901687) Sugiyamaella lignohabitans 30033021 AWJ20_1241 mRNA VTH2 NC_031672.1 3901870 3904608 R AWJ20_1241 complement(<3901870..>3904608) Sugiyamaella lignohabitans 30033022 AWJ20_1242 mRNA CWC25 NC_031672.1 3905169 3906482 D AWJ20_1242 <3905169..>3906482 Sugiyamaella lignohabitans 30033023 AWJ20_1243 mRNA AWJ20_1243 NC_031672.1 3906646 3906897 R AWJ20_1243 complement(<3906646..>3906897) Sugiyamaella lignohabitans 30033024 AWJ20_1244 mRNA AWJ20_1244 NC_031672.1 3907654 3909381 D AWJ20_1244 <3907654..>3909381 Sugiyamaella lignohabitans 30033025 AWJ20_1245 mRNA CGR1 NC_031672.1 3909581 3910078 R AWJ20_1245 complement(<3909581..>3910078) Sugiyamaella lignohabitans 30033026 AWJ20_1246 mRNA AWJ20_1246 NC_031672.1 3910730 3912565 D AWJ20_1246 <3910730..>3912565 Sugiyamaella lignohabitans 30033027 AWJ20_1247 mRNA RIM101 NC_031672.1 3913807 3915870 R AWJ20_1247 complement(<3913807..>3915870) Sugiyamaella lignohabitans 30033028 AWJ20_1248 mRNA TEF1 NC_031672.1 3918381 3919457 R AWJ20_1248 complement(<3918381..>3919457) Sugiyamaella lignohabitans 30033029 AWJ20_1249 mRNA ASG1 NC_031672.1 3924513 3927276 R AWJ20_1249 complement(join(<3924513..3926960,3927019..>3927276)) Sugiyamaella lignohabitans 30033030 AWJ20_1250 mRNA FKH2 NC_031672.1 3930628 3933252 D AWJ20_1250 <3930628..>3933252 Sugiyamaella lignohabitans 30033032 AWJ20_1251 mRNA AWJ20_1251 NC_031672.1 3933672 3934385 R AWJ20_1251 complement(<3933672..>3934385) Sugiyamaella lignohabitans 30033033 AWJ20_1252 mRNA RPL16A NC_031672.1 3936952 3937293 D AWJ20_1252 <3936952..>3937293 Sugiyamaella lignohabitans 30033034 AWJ20_1253 mRNA ZTA1 NC_031672.1 3937661 3938722 R AWJ20_1253 complement(<3937661..>3938722) Sugiyamaella lignohabitans 30033035 AWJ20_1254 mRNA STB3 NC_031672.1 3943087 3945075 D AWJ20_1254 <3943087..>3945075 Sugiyamaella lignohabitans 30033036 AWJ20_1255 mRNA STM1 NC_031672.1 3945569 3946693 R AWJ20_1255 complement(join(<3945569..3946417,3946673..>3946693)) Sugiyamaella lignohabitans 30033037 AWJ20_1256 mRNA PCS60 NC_031672.1 3948715 3950526 D AWJ20_1256 <3948715..>3950526 Sugiyamaella lignohabitans 30033038 AWJ20_1257 mRNA MRP51 NC_031672.1 3950723 3951658 R AWJ20_1257 complement(<3950723..>3951658) Sugiyamaella lignohabitans 30033039 AWJ20_1258 mRNA RET1 NC_031672.1 3952083 3955532 R AWJ20_1258 complement(<3952083..>3955532) Sugiyamaella lignohabitans 30033040 AWJ20_1259 mRNA ASI1 NC_031672.1 3956847 3959366 D AWJ20_1259 <3956847..>3959366 Sugiyamaella lignohabitans 30033041 AWJ20_1260 mRNA AWJ20_1260 NC_031672.1 3960119 3961741 D AWJ20_1260 <3960119..>3961741 Sugiyamaella lignohabitans 30033043 AWJ20_1261 mRNA DIT2 NC_031672.1 3962490 3963839 D AWJ20_1261 <3962490..>3963839 Sugiyamaella lignohabitans 30033044 AWJ20_1262 mRNA POP1 NC_031672.1 3963894 3966350 R AWJ20_1262 complement(<3963894..>3966350) Sugiyamaella lignohabitans 30033045 AWJ20_1263 mRNA AWJ20_1263 NC_031672.1 3967235 3967471 D AWJ20_1263 <3967235..>3967471 Sugiyamaella lignohabitans 30033046 AWJ20_1264 mRNA ALG9 NC_031672.1 3967836 3969572 D AWJ20_1264 <3967836..>3969572 Sugiyamaella lignohabitans 30033047 AWJ20_1265 mRNA ADE12 NC_031672.1 3969798 3970925 R AWJ20_1265 complement(<3969798..>3970925) Sugiyamaella lignohabitans 30033048 AWJ20_1266 mRNA PHO13 NC_031672.1 3972371 3973294 D AWJ20_1266 <3972371..>3973294 Sugiyamaella lignohabitans 30033049 AWJ20_1267 mRNA PRB1 NC_031672.1 3974167 3975372 D AWJ20_1267 <3974167..>3975372 Sugiyamaella lignohabitans 30033050 AWJ20_1268 mRNA BNA3 NC_031672.1 3978026 3979447 R AWJ20_1268 complement(<3978026..>3979447) Sugiyamaella lignohabitans 30033051 AWJ20_1269 mRNA FMP21 NC_031672.1 3980505 3980861 D AWJ20_1269 <3980505..>3980861 Sugiyamaella lignohabitans 30033052 AWJ20_1270 mRNA AWJ20_1270 NC_031672.1 3981387 3983789 R AWJ20_1270 complement(<3981387..>3983789) Sugiyamaella lignohabitans 30033054 AWJ20_1271 mRNA UTP23 NC_031672.1 3984623 3985330 D AWJ20_1271 <3984623..>3985330 Sugiyamaella lignohabitans 30033055 AWJ20_1272 mRNA AWJ20_1272 NC_031672.1 3985859 3986209 R AWJ20_1272 complement(<3985859..>3986209) Sugiyamaella lignohabitans 30033056 AWJ20_1273 mRNA AWJ20_1273 NC_031672.1 3986413 3987684 R AWJ20_1273 complement(<3986413..>3987684) Sugiyamaella lignohabitans 30033057 AWJ20_1274 mRNA AWJ20_1274 NC_031672.1 3991123 3991623 D AWJ20_1274 <3991123..>3991623 Sugiyamaella lignohabitans 30033058 AWJ20_1275 mRNA YCF1 NC_031672.1 3991788 3995597 R AWJ20_1275 complement(<3991788..>3995597) Sugiyamaella lignohabitans 30033059 AWJ20_1276 mRNA ARE2 NC_031672.1 3998109 3999737 D AWJ20_1276 <3998109..>3999737 Sugiyamaella lignohabitans 30033060 AWJ20_1277 mRNA ATP23 NC_031672.1 4000122 4000826 R AWJ20_1277 complement(<4000122..>4000826) Sugiyamaella lignohabitans 30033061 AWJ20_1278 mRNA AWJ20_1278 NC_031672.1 4001152 4001496 D AWJ20_1278 <4001152..>4001496 Sugiyamaella lignohabitans 30033062 AWJ20_1279 mRNA AWJ20_1279 NC_031672.1 4001527 4001859 D AWJ20_1279 <4001527..>4001859 Sugiyamaella lignohabitans 30033063 AWJ20_1280 mRNA GUF1 NC_031672.1 4001986 4004007 R AWJ20_1280 complement(<4001986..>4004007) Sugiyamaella lignohabitans 30033065 AWJ20_1281 mRNA RPH1 NC_031672.1 4004847 4007660 R AWJ20_1281 complement(<4004847..>4007660) Sugiyamaella lignohabitans 30033066 AWJ20_1282 mRNA SAH1 NC_031672.1 4011416 4012759 R AWJ20_1282 complement(<4011416..>4012759) Sugiyamaella lignohabitans 30033067 AWJ20_1283 mRNA MDJ1 NC_031672.1 4014497 4015927 D AWJ20_1283 <4014497..>4015927 Sugiyamaella lignohabitans 30033068 AWJ20_1284 mRNA AWJ20_1284 NC_031672.1 4019282 4021918 D AWJ20_1284 <4019282..>4021918 Sugiyamaella lignohabitans 30033069 AWJ20_1285 mRNA AWJ20_1285 NC_031672.1 4022685 4023509 D AWJ20_1285 <4022685..>4023509 Sugiyamaella lignohabitans 30033070 AWJ20_1286 mRNA AWJ20_1286 NC_031672.1 4037048 4038583 D AWJ20_1286 <4037048..>4038583 Sugiyamaella lignohabitans 30033071 AWJ20_1287 mRNA AWJ20_1287 NC_031672.1 4038996 4040693 D AWJ20_1287 <4038996..>4040693 Sugiyamaella lignohabitans 30033072 AWJ20_1288 mRNA AWJ20_1288 NC_031672.1 4040851 4042032 R AWJ20_1288 complement(<4040851..>4042032) Sugiyamaella lignohabitans 30033073 AWJ20_1289 mRNA AWJ20_1289 NC_031672.1 4043574 4045370 D AWJ20_1289 <4043574..>4045370 Sugiyamaella lignohabitans 30033074 AWJ20_1290 mRNA tam14 NC_031672.1 4045445 4046281 R AWJ20_1290 complement(<4045445..>4046281) Sugiyamaella lignohabitans 30033076 AWJ20_1291 mRNA KNS1 NC_031672.1 4046866 4049136 R AWJ20_1291 complement(<4046866..>4049136) Sugiyamaella lignohabitans 30033077 AWJ20_1292 mRNA EAR1 NC_031672.1 4053605 4055299 D AWJ20_1292 <4053605..>4055299 Sugiyamaella lignohabitans 30033078 AWJ20_1293 mRNA AWJ20_1293 NC_031672.1 4056021 4057532 D AWJ20_1293 <4056021..>4057532 Sugiyamaella lignohabitans 30033079 AWJ20_1294 mRNA SHB17 NC_031672.1 4057860 4058531 R AWJ20_1294 complement(<4057860..>4058531) Sugiyamaella lignohabitans 30033080 AWJ20_1295 mRNA AWJ20_1295 NC_031672.1 4059134 4059916 R AWJ20_1295 complement(<4059134..>4059916) Sugiyamaella lignohabitans 30033081 AWJ20_1296 mRNA STI1 NC_031672.1 4060875 4062587 R AWJ20_1296 complement(<4060875..>4062587) Sugiyamaella lignohabitans 30033082 AWJ20_1297 mRNA HSV2 NC_031672.1 4063384 4064709 D AWJ20_1297 <4063384..>4064709 Sugiyamaella lignohabitans 30033083 AWJ20_1298 mRNA AWJ20_1298 NC_031672.1 4066094 4066393 D AWJ20_1298 <4066094..>4066393 Sugiyamaella lignohabitans 30033084 AWJ20_1299 mRNA AWJ20_1299 NC_031672.1 4067717 4068472 D AWJ20_1299 <4067717..>4068472 Sugiyamaella lignohabitans 30033085 AWJ20_1300 mRNA AWJ20_1300 NC_031672.1 4068596 4070899 R AWJ20_1300 complement(<4068596..>4070899) Sugiyamaella lignohabitans 30033088 AWJ20_1301 mRNA PRP28 NC_031672.1 4071069 4072922 R AWJ20_1301 complement(<4071069..>4072922) Sugiyamaella lignohabitans 30033089 AWJ20_1302 mRNA AWJ20_1302 NC_031672.1 4073672 4075216 D AWJ20_1302 <4073672..>4075216 Sugiyamaella lignohabitans 30033090 AWJ20_1303 mRNA MPE1 NC_031672.1 4075389 4076822 R AWJ20_1303 complement(<4075389..>4076822) Sugiyamaella lignohabitans 30033091 AWJ20_1304 mRNA TIF35 NC_031672.1 4078616 4079164 R AWJ20_1304 complement(<4078616..>4079164) Sugiyamaella lignohabitans 30033092 AWJ20_1305 mRNA INM2 NC_031672.1 4080306 4081172 D AWJ20_1305 <4080306..>4081172 Sugiyamaella lignohabitans 30033093 AWJ20_1306 mRNA AWJ20_1306 NC_031672.1 4083598 4084452 R AWJ20_1306 complement(<4083598..>4084452) Sugiyamaella lignohabitans 30033094 AWJ20_1307 mRNA LCB1 NC_031672.1 4086710 4088263 D AWJ20_1307 <4086710..>4088263 Sugiyamaella lignohabitans 30033095 AWJ20_1308 mRNA COX20 NC_031672.1 4088550 4089059 D AWJ20_1308 <4088550..>4089059 Sugiyamaella lignohabitans 30033096 AWJ20_1309 mRNA AWJ20_1309 NC_031672.1 4091592 4092836 D AWJ20_1309 <4091592..>4092836 Sugiyamaella lignohabitans 30033097 AWJ20_1310 mRNA HEM1 NC_031672.1 4093127 4094887 R AWJ20_1310 complement(<4093127..>4094887) Sugiyamaella lignohabitans 30033099 AWJ20_1311 mRNA AWJ20_1311 NC_031672.1 4096597 4097343 D AWJ20_1311 <4096597..>4097343 Sugiyamaella lignohabitans 30033100 AWJ20_1312 mRNA AWJ20_1312 NC_031672.1 4097536 4099629 R AWJ20_1312 complement(<4097536..>4099629) Sugiyamaella lignohabitans 30033101 AWJ20_1313 mRNA NTE1 NC_031672.1 4100698 4105101 D AWJ20_1313 <4100698..>4105101 Sugiyamaella lignohabitans 30033102 AWJ20_1314 mRNA MRPL4 NC_031672.1 4106316 4107185 D AWJ20_1314 <4106316..>4107185 Sugiyamaella lignohabitans 30033103 AWJ20_1315 mRNA IMP2 NC_031672.1 4107272 4107805 R AWJ20_1315 complement(<4107272..>4107805) Sugiyamaella lignohabitans 30033104 AWJ20_1316 mRNA RRP42 NC_031672.1 4109165 4110049 R AWJ20_1316 complement(<4109165..>4110049) Sugiyamaella lignohabitans 30033105 AWJ20_1317 mRNA AWJ20_1317 NC_031672.1 4110418 4111179 D AWJ20_1317 <4110418..>4111179 Sugiyamaella lignohabitans 30033106 AWJ20_1318 mRNA ERV25 NC_031672.1 4111348 4111998 R AWJ20_1318 complement(<4111348..>4111998) Sugiyamaella lignohabitans 30033107 AWJ20_1319 mRNA ARB1 NC_031672.1 4113190 4115022 D AWJ20_1319 <4113190..>4115022 Sugiyamaella lignohabitans 30033108 AWJ20_1320 mRNA TRM3 NC_031672.1 4115275 4118685 R AWJ20_1320 complement(<4115275..>4118685) Sugiyamaella lignohabitans 30033110 AWJ20_1321 mRNA KIP3 NC_031672.1 4120177 4121904 D AWJ20_1321 <4120177..>4121904 Sugiyamaella lignohabitans 30033111 AWJ20_1322 mRNA NCS6 NC_031672.1 4125665 4126972 R AWJ20_1322 complement(<4125665..>4126972) Sugiyamaella lignohabitans 30033112 AWJ20_1323 mRNA AWJ20_1323 NC_031672.1 4127305 4127847 D AWJ20_1323 <4127305..>4127847 Sugiyamaella lignohabitans 30033113 AWJ20_1324 mRNA FIP1 NC_031672.1 4128001 4128849 R AWJ20_1324 complement(<4128001..>4128849) Sugiyamaella lignohabitans 30033114 AWJ20_1325 mRNA CEG1 NC_031672.1 4129887 4130876 D AWJ20_1325 <4129887..>4130876 Sugiyamaella lignohabitans 30033115 AWJ20_1326 mRNA RSM23 NC_031672.1 4131219 4132574 D AWJ20_1326 <4131219..>4132574 Sugiyamaella lignohabitans 30033116 AWJ20_1327 mRNA FLR1 NC_031672.1 4135843 4136688 D AWJ20_1327 <4135843..>4136688 Sugiyamaella lignohabitans 30033117 AWJ20_1328 mRNA FLR1 NC_031672.1 4136764 4137609 D AWJ20_1328 <4136764..>4137609 Sugiyamaella lignohabitans 30033118 AWJ20_1329 mRNA ROG1 NC_031672.1 4138486 4139997 D AWJ20_1329 <4138486..>4139997 Sugiyamaella lignohabitans 30033119 AWJ20_1330 mRNA AWJ20_1330 NC_031672.1 4141009 4143294 R AWJ20_1330 complement(<4141009..>4143294) Sugiyamaella lignohabitans 30033121 AWJ20_1331 mRNA MRPS9 NC_031672.1 4146293 4147312 D AWJ20_1331 <4146293..>4147312 Sugiyamaella lignohabitans 30033122 AWJ20_1332 mRNA MDM20 NC_031672.1 4148024 4150468 R AWJ20_1332 complement(<4148024..>4150468) Sugiyamaella lignohabitans 30033123 AWJ20_1333 mRNA BRX1 NC_031672.1 4150873 4151769 D AWJ20_1333 <4150873..>4151769 Sugiyamaella lignohabitans 30033124 AWJ20_1334 mRNA AWJ20_1334 NC_031672.1 4153107 4155878 D AWJ20_1334 <4153107..>4155878 Sugiyamaella lignohabitans 30033125 AWJ20_1335 mRNA TRS31 NC_031672.1 4159102 4159875 D AWJ20_1335 <4159102..>4159875 Sugiyamaella lignohabitans 30033126 AWJ20_1336 mRNA ARD1 NC_031672.1 4160168 4160752 R AWJ20_1336 complement(<4160168..>4160752) Sugiyamaella lignohabitans 30033127 AWJ20_1337 mRNA UBA3 NC_031672.1 4161704 4162756 D AWJ20_1337 <4161704..>4162756 Sugiyamaella lignohabitans 30033128 AWJ20_1338 mRNA VPS33 NC_031672.1 4162897 4165218 R AWJ20_1338 complement(<4162897..>4165218) Sugiyamaella lignohabitans 30033129 AWJ20_1339 mRNA AWJ20_1339 NC_031672.1 4168531 4169757 D AWJ20_1339 <4168531..>4169757 Sugiyamaella lignohabitans 30033130 AWJ20_1340 mRNA AWJ20_1340 NC_031672.1 4170447 4170833 R AWJ20_1340 complement(<4170447..>4170833) Sugiyamaella lignohabitans 30033132 AWJ20_1341 mRNA GCN5 NC_031672.1 4171172 4173193 D AWJ20_1341 <4171172..>4173193 Sugiyamaella lignohabitans 30033133 AWJ20_1342 mRNA PUP2 NC_031672.1 4173466 4173678 R AWJ20_1342 complement(<4173466..>4173678) Sugiyamaella lignohabitans 30033134 AWJ20_1343 mRNA SPC97 NC_031672.1 4175462 4177699 D AWJ20_1343 <4175462..>4177699 Sugiyamaella lignohabitans 30033135 AWJ20_1345 mRNA RAD24 NC_031672.1 4179014 4181008 D AWJ20_1345 <4179014..>4181008 Sugiyamaella lignohabitans 30033137 AWJ20_1346 mRNA AWJ20_1346 NC_031672.1 4181201 4181968 R AWJ20_1346 complement(<4181201..>4181968) Sugiyamaella lignohabitans 30033138 AWJ20_1347 mRNA AWJ20_1347 NC_031672.1 4182576 4184096 R AWJ20_1347 complement(<4182576..>4184096) Sugiyamaella lignohabitans 30033139 AWJ20_1348 mRNA NGG1 NC_031672.1 4186945 4189317 D AWJ20_1348 <4186945..>4189317 Sugiyamaella lignohabitans 30033140 AWJ20_1349 mRNA MAS1 NC_031672.1 4189627 4191075 R AWJ20_1349 complement(<4189627..>4191075) Sugiyamaella lignohabitans 30033141 AWJ20_1350 mRNA SHH4 NC_031672.1 4191723 4192352 D AWJ20_1350 <4191723..>4192352 Sugiyamaella lignohabitans 30033143 AWJ20_1351 mRNA AWJ20_1351 NC_031672.1 4193571 4194710 D AWJ20_1351 <4193571..>4194710 Sugiyamaella lignohabitans 30033144 AWJ20_1352 mRNA AWJ20_1352 NC_031672.1 4194994 4195677 R AWJ20_1352 complement(<4194994..>4195677) Sugiyamaella lignohabitans 30033145 AWJ20_1353 mRNA ARG81 NC_031672.1 4198989 4201463 D AWJ20_1353 <4198989..>4201463 Sugiyamaella lignohabitans 30033146 AWJ20_1354 mRNA AWJ20_1354 NC_031672.1 4201950 4203500 D AWJ20_1354 <4201950..>4203500 Sugiyamaella lignohabitans 30033147 AWJ20_1355 mRNA AWJ20_1355 NC_031672.1 4203618 4204403 R AWJ20_1355 complement(<4203618..>4204403) Sugiyamaella lignohabitans 30033148 AWJ20_1356 mRNA AWJ20_1356 NC_031672.1 4206139 4207065 D AWJ20_1356 <4206139..>4207065 Sugiyamaella lignohabitans 30033149 AWJ20_1357 mRNA TNA1 NC_031672.1 4207912 4212013 D AWJ20_1357 join(<4207912..4209347,4209685..>4212013) Sugiyamaella lignohabitans 30033150 AWJ20_1358 mRNA AWJ20_1358 NC_031672.1 4212296 4213054 R AWJ20_1358 complement(<4212296..>4213054) Sugiyamaella lignohabitans 30033151 AWJ20_1359 mRNA ATG22 NC_031672.1 4213343 4215208 R AWJ20_1359 complement(<4213343..>4215208) Sugiyamaella lignohabitans 30033152 AWJ20_1360 mRNA SRO9 NC_031672.1 4217411 4217890 R AWJ20_1360 complement(<4217411..>4217890) Sugiyamaella lignohabitans 30033154 AWJ20_1361 mRNA GAL10 NC_031672.1 4222512 4223534 D AWJ20_1361 <4222512..>4223534 Sugiyamaella lignohabitans 30033155 AWJ20_1362 mRNA AWJ20_1362 NC_031672.1 4224133 4226331 D AWJ20_1362 <4224133..>4226331 Sugiyamaella lignohabitans 30033156 AWJ20_1363 mRNA GEF1 NC_031672.1 4226799 4229231 D AWJ20_1363 <4226799..>4229231 Sugiyamaella lignohabitans 30033157 AWJ20_1364 mRNA TAF6 NC_031672.1 4229433 4230824 R AWJ20_1364 complement(<4229433..>4230824) Sugiyamaella lignohabitans 30033158 AWJ20_1365 mRNA AWJ20_1365 NC_031672.1 4231018 4232859 D AWJ20_1365 <4231018..>4232859 Sugiyamaella lignohabitans 30033159 AWJ20_1366 mRNA PRP5 NC_031672.1 4233936 4237196 R AWJ20_1366 complement(join(<4233936..4236611,4236801..>4237196)) Sugiyamaella lignohabitans 30033160 AWJ20_1367 mRNA DNF1 NC_031672.1 4237442 4241806 R AWJ20_1367 complement(<4237442..>4241806) Sugiyamaella lignohabitans 30033161 AWJ20_1368 mRNA SIW14 NC_031672.1 4244540 4245493 R AWJ20_1368 complement(<4244540..>4245493) Sugiyamaella lignohabitans 30033162 AWJ20_1369 mRNA AWJ20_1369 NC_031672.1 4246914 4248374 R AWJ20_1369 complement(<4246914..>4248374) Sugiyamaella lignohabitans 30033163 AWJ20_1370 mRNA CDC6 NC_031672.1 4252799 4254700 R AWJ20_1370 complement(<4252799..>4254700) Sugiyamaella lignohabitans 30033165 AWJ20_1371 mRNA AWJ20_1371 NC_031672.1 4255724 4256779 D AWJ20_1371 <4255724..>4256779 Sugiyamaella lignohabitans 30033166 AWJ20_1372 mRNA MGA2 NC_031672.1 4257918 4259387 D AWJ20_1372 <4257918..>4259387 Sugiyamaella lignohabitans 30033167 AWJ20_1373 mRNA SPT23 NC_031672.1 4259649 4262150 D AWJ20_1373 <4259649..>4262150 Sugiyamaella lignohabitans 30033168 AWJ20_1374 mRNA AWJ20_1374 NC_031672.1 4263496 4266201 D AWJ20_1374 <4263496..>4266201 Sugiyamaella lignohabitans 30033169 AWJ20_1375 mRNA AWJ20_1375 NC_031672.1 4266387 4267850 R AWJ20_1375 complement(<4266387..>4267850) Sugiyamaella lignohabitans 30033170 AWJ20_1376 mRNA AWJ20_1376 NC_031672.1 4268060 4268662 D AWJ20_1376 <4268060..>4268662 Sugiyamaella lignohabitans 30033171 AWJ20_1377 mRNA MNT2 NC_031672.1 4269086 4270765 R AWJ20_1377 complement(<4269086..>4270765) Sugiyamaella lignohabitans 30033172 AWJ20_1379 mRNA RPL26B NC_031672.1 4273915 4274211 D AWJ20_1379 <4273915..>4274211 Sugiyamaella lignohabitans 30033174 AWJ20_1380 mRNA SPT8 NC_031672.1 4275791 4277899 D AWJ20_1380 <4275791..>4277899 Sugiyamaella lignohabitans 30033176 AWJ20_1381 mRNA AWJ20_1381 NC_031672.1 4278517 4279854 D AWJ20_1381 <4278517..>4279854 Sugiyamaella lignohabitans 30033177 AWJ20_1382 mRNA GYP8 NC_031672.1 4279949 4281625 R AWJ20_1382 complement(<4279949..>4281625) Sugiyamaella lignohabitans 30033178 AWJ20_1383 mRNA CAK1 NC_031672.1 4281952 4282944 D AWJ20_1383 <4281952..>4282944 Sugiyamaella lignohabitans 30033179 AWJ20_1384 mRNA AWJ20_1384 NC_031672.1 4283204 4284466 R AWJ20_1384 complement(<4283204..>4284466) Sugiyamaella lignohabitans 30033180 AWJ20_1385 mRNA AWJ20_1385 NC_031672.1 4284728 4285039 D AWJ20_1385 <4284728..>4285039 Sugiyamaella lignohabitans 30033181 AWJ20_1386 mRNA PFK2 NC_031672.1 4287636 4290539 R AWJ20_1386 complement(<4287636..>4290539) Sugiyamaella lignohabitans 30033182 AWJ20_1387 mRNA SPE1 NC_031672.1 4293423 4294772 D AWJ20_1387 <4293423..>4294772 Sugiyamaella lignohabitans 30033183 AWJ20_1388 mRNA AWJ20_1388 NC_031672.1 4295474 4296610 D AWJ20_1388 <4295474..>4296610 Sugiyamaella lignohabitans 30033184 AWJ20_1389 mRNA AWJ20_1389 NC_031672.1 4297380 4298501 D AWJ20_1389 <4297380..>4298501 Sugiyamaella lignohabitans 30033185 AWJ20_1391 mRNA AWJ20_1391 NC_031672.1 4299074 4300150 R AWJ20_1391 complement(<4299074..>4300150) Sugiyamaella lignohabitans 30033188 AWJ20_1392 mRNA AWJ20_1392 NC_031672.1 4300950 4301972 D AWJ20_1392 <4300950..>4301972 Sugiyamaella lignohabitans 30033189 AWJ20_1393 mRNA AWJ20_1393 NC_031672.1 4302048 4303703 R AWJ20_1393 complement(<4302048..>4303703) Sugiyamaella lignohabitans 30033190 AWJ20_1394 mRNA AWJ20_1394 NC_031672.1 4304048 4304875 D AWJ20_1394 <4304048..>4304875 Sugiyamaella lignohabitans 30033191 AWJ20_1395 mRNA AWJ20_1395 NC_031672.1 4305250 4305699 D AWJ20_1395 <4305250..>4305699 Sugiyamaella lignohabitans 30033192 AWJ20_1396 mRNA AWJ20_1396 NC_031672.1 4305832 4307976 R AWJ20_1396 complement(<4305832..>4307976) Sugiyamaella lignohabitans 30033193 AWJ20_1397 mRNA AWJ20_1397 NC_031672.1 4310964 4312625 D AWJ20_1397 <4310964..>4312625 Sugiyamaella lignohabitans 30033194 AWJ20_1398 mRNA BPL1 NC_031672.1 4312936 4315053 D AWJ20_1398 <4312936..>4315053 Sugiyamaella lignohabitans 30033195 AWJ20_1399 mRNA AWJ20_1399 NC_031672.1 4315191 4316120 R AWJ20_1399 complement(<4315191..>4316120) Sugiyamaella lignohabitans 30033196 AWJ20_1400 mRNA YCS4 NC_031672.1 4317184 4320285 D AWJ20_1400 <4317184..>4320285 Sugiyamaella lignohabitans 30033199 AWJ20_1401 mRNA THO1 NC_031672.1 4324385 4325026 D AWJ20_1401 <4324385..>4325026 Sugiyamaella lignohabitans 30033200 AWJ20_1402 mRNA AWJ20_1402 NC_031672.1 4325347 4327911 R AWJ20_1402 complement(<4325347..>4327911) Sugiyamaella lignohabitans 30033201 AWJ20_1403 mRNA AWJ20_1403 NC_031672.1 4330438 4332909 D AWJ20_1403 <4330438..>4332909 Sugiyamaella lignohabitans 30033202 AWJ20_1404 mRNA AWJ20_1404 NC_031672.1 4333038 4334234 R AWJ20_1404 complement(<4333038..>4334234) Sugiyamaella lignohabitans 30033203 AWJ20_1405 mRNA AWJ20_1405 NC_031672.1 4336774 4338051 R AWJ20_1405 complement(<4336774..>4338051) Sugiyamaella lignohabitans 30033204 AWJ20_1406 mRNA BDF1 NC_031672.1 4342857 4345364 R AWJ20_1406 complement(<4342857..>4345364) Sugiyamaella lignohabitans 30033205 AWJ20_1407 mRNA AWJ20_1407 NC_031672.1 4347346 4348356 D AWJ20_1407 <4347346..>4348356 Sugiyamaella lignohabitans 30033206 AWJ20_1408 mRNA YML6 NC_031672.1 4348715 4349518 D AWJ20_1408 <4348715..>4349518 Sugiyamaella lignohabitans 30033207 AWJ20_1409 mRNA YOX1 NC_031672.1 4350980 4352281 R AWJ20_1409 complement(<4350980..>4352281) Sugiyamaella lignohabitans 30033208 AWJ20_1410 mRNA YEH2 NC_031672.1 4355324 4356871 R AWJ20_1410 complement(<4355324..>4356871) Sugiyamaella lignohabitans 30033210 AWJ20_1411 mRNA MET14 NC_031672.1 4359246 4359512 D AWJ20_1411 <4359246..>4359512 Sugiyamaella lignohabitans 30033211 AWJ20_1412 mRNA DID4 NC_031672.1 4359793 4360224 R AWJ20_1412 complement(<4359793..>4360224) Sugiyamaella lignohabitans 30033212 AWJ20_1413 mRNA RIM11 NC_031672.1 4364485 4365633 D AWJ20_1413 <4364485..>4365633 Sugiyamaella lignohabitans 30033213 AWJ20_1414 mRNA VPS68 NC_031672.1 4365874 4366395 R AWJ20_1414 complement(<4365874..>4366395) Sugiyamaella lignohabitans 30033214 AWJ20_1415 mRNA AMO2 NC_031672.1 4369834 4371843 D AWJ20_1415 <4369834..>4371843 Sugiyamaella lignohabitans 30033215 AWJ20_1416 mRNA AWJ20_1416 NC_031672.1 4373358 4374101 D AWJ20_1416 <4373358..>4374101 Sugiyamaella lignohabitans 30033216 AWJ20_1417 mRNA AWJ20_1417 NC_031672.1 4376214 4377440 D AWJ20_1417 <4376214..>4377440 Sugiyamaella lignohabitans 30033217 AWJ20_1418 mRNA RPL3 NC_031672.1 4378139 4379305 D AWJ20_1418 <4378139..>4379305 Sugiyamaella lignohabitans 30033218 AWJ20_1419 mRNA AWJ20_1419 NC_031672.1 4380632 4381675 D AWJ20_1419 <4380632..>4381675 Sugiyamaella lignohabitans 30033219 AWJ20_1420 mRNA CRH1 NC_031672.1 4383089 4384429 R AWJ20_1420 complement(<4383089..>4384429) Sugiyamaella lignohabitans 30033221 AWJ20_1421 mRNA SCT1 NC_031672.1 4384741 4386822 R AWJ20_1421 complement(<4384741..>4386822) Sugiyamaella lignohabitans 30033222 AWJ20_1422 mRNA GAT2 NC_031672.1 4392245 4393660 D AWJ20_1422 <4392245..>4393660 Sugiyamaella lignohabitans 30033223 AWJ20_1423 mRNA STD1 NC_031672.1 4401492 4402403 D AWJ20_1423 <4401492..>4402403 Sugiyamaella lignohabitans 30033224 AWJ20_1424 mRNA DBP5 NC_031672.1 4406964 4408550 D AWJ20_1424 <4406964..>4408550 Sugiyamaella lignohabitans 30033225 AWJ20_1425 mRNA iec1 NC_031672.1 4408782 4410008 R AWJ20_1425 complement(<4408782..>4410008) Sugiyamaella lignohabitans 30033226 AWJ20_1426 mRNA FRS2 NC_031672.1 4410642 4412120 D AWJ20_1426 <4410642..>4412120 Sugiyamaella lignohabitans 30033227 AWJ20_1427 mRNA GPA1 NC_031672.1 4416699 4417931 D AWJ20_1427 <4416699..>4417931 Sugiyamaella lignohabitans 30033228 AWJ20_1429 mRNA HSE1 NC_031672.1 4423090 4425216 R AWJ20_1429 complement(<4423090..>4425216) Sugiyamaella lignohabitans 30033230 AWJ20_1430 mRNA LAG1 NC_031672.1 4426355 4427575 D AWJ20_1430 <4426355..>4427575 Sugiyamaella lignohabitans 30033232 AWJ20_1431 mRNA MRP4 NC_031672.1 4428328 4429794 R AWJ20_1431 complement(<4428328..>4429794) Sugiyamaella lignohabitans 30033233 AWJ20_1432 mRNA STE20 NC_031672.1 4430273 4433728 R AWJ20_1432 complement(<4430273..>4433728) Sugiyamaella lignohabitans 30033234 AWJ20_1433 mRNA BYE1 NC_031672.1 4438514 4441126 R AWJ20_1433 complement(<4438514..>4441126) Sugiyamaella lignohabitans 30033235 AWJ20_1434 mRNA ALF1 NC_031672.1 4442851 4443588 D AWJ20_1434 <4442851..>4443588 Sugiyamaella lignohabitans 30033236 AWJ20_1435 mRNA MIF2 NC_031672.1 4443694 4445343 R AWJ20_1435 complement(<4443694..>4445343) Sugiyamaella lignohabitans 30033237 AWJ20_1436 mRNA MRS6 NC_031672.1 4446165 4447928 R AWJ20_1436 complement(<4446165..>4447928) Sugiyamaella lignohabitans 30033238 AWJ20_1437 mRNA NHA1 NC_031672.1 4449433 4449915 R AWJ20_1437 complement(<4449433..>4449915) Sugiyamaella lignohabitans 30033239 AWJ20_1438 mRNA RPL28 NC_031672.1 4452421 4452771 D AWJ20_1438 <4452421..>4452771 Sugiyamaella lignohabitans 30033240 AWJ20_1439 mRNA AWJ20_1439 NC_031672.1 4453927 4454673 D AWJ20_1439 <4453927..>4454673 Sugiyamaella lignohabitans 30033241 AWJ20_1440 mRNA AWJ20_1440 NC_031672.1 4458778 4460907 R AWJ20_1440 complement(<4458778..>4460907) Sugiyamaella lignohabitans 30033243 AWJ20_1441 mRNA EMG1 NC_031672.1 4461872 4462612 D AWJ20_1441 <4461872..>4462612 Sugiyamaella lignohabitans 30033244 AWJ20_1442 mRNA AWJ20_1442 NC_031672.1 4464738 4465931 D AWJ20_1442 <4464738..>4465931 Sugiyamaella lignohabitans 30033245 AWJ20_1443 mRNA AWJ20_1443 NC_031672.1 4466251 4466649 R AWJ20_1443 complement(<4466251..>4466649) Sugiyamaella lignohabitans 30033246 AWJ20_1444 mRNA JLP1 NC_031672.1 4468917 4470095 D AWJ20_1444 <4468917..>4470095 Sugiyamaella lignohabitans 30033247 AWJ20_1445 mRNA GEF1 NC_031672.1 4471186 4472781 D AWJ20_1445 <4471186..>4472781 Sugiyamaella lignohabitans 30033248 AWJ20_1446 mRNA GEF1 NC_031672.1 4472914 4474194 D AWJ20_1446 <4472914..>4474194 Sugiyamaella lignohabitans 30033249 AWJ20_1447 mRNA GDA1 NC_031672.1 4474282 4475799 R AWJ20_1447 complement(<4474282..>4475799) Sugiyamaella lignohabitans 30033250 AWJ20_1448 mRNA AWJ20_1448 NC_031672.1 4476935 4478458 D AWJ20_1448 <4476935..>4478458 Sugiyamaella lignohabitans 30033251 AWJ20_1449 mRNA AWJ20_1449 NC_031672.1 4478537 4480810 R AWJ20_1449 complement(<4478537..>4480810) Sugiyamaella lignohabitans 30033252 AWJ20_1450 mRNA KAR4 NC_031672.1 4482081 4483406 D AWJ20_1450 <4482081..>4483406 Sugiyamaella lignohabitans 30033254 AWJ20_1451 mRNA AWJ20_1451 NC_031672.1 4483678 4484643 R AWJ20_1451 complement(<4483678..>4484643) Sugiyamaella lignohabitans 30033255 AWJ20_1452 mRNA DBP1 NC_031672.1 4486495 4488444 D AWJ20_1452 <4486495..>4488444 Sugiyamaella lignohabitans 30033256 AWJ20_1453 mRNA AGE1 NC_031672.1 4500659 4504351 D AWJ20_1453 <4500659..>4504351 Sugiyamaella lignohabitans 30033257 AWJ20_1454 mRNA AWJ20_1454 NC_031672.1 4513013 4514992 D AWJ20_1454 <4513013..>4514992 Sugiyamaella lignohabitans 30033258 AWJ20_1455 mRNA ACO1 NC_031672.1 4518381 4520393 D AWJ20_1455 <4518381..>4520393 Sugiyamaella lignohabitans 30033259 AWJ20_1456 mRNA AWJ20_1456 NC_031672.1 4518590 4518907 R AWJ20_1456 complement(<4518590..>4518907) Sugiyamaella lignohabitans 30033260 AWJ20_1457 mRNA TGL1 NC_031672.1 4520526 4522214 R AWJ20_1457 complement(<4520526..>4522214) Sugiyamaella lignohabitans 30033261 AWJ20_1458 mRNA Lipf NC_031672.1 4522796 4523497 D AWJ20_1458 <4522796..>4523497 Sugiyamaella lignohabitans 30033262 AWJ20_1459 mRNA GUP1 NC_031672.1 4525429 4526472 D AWJ20_1459 <4525429..>4526472 Sugiyamaella lignohabitans 30033263 AWJ20_1460 mRNA LCL3 NC_031672.1 4526890 4527633 R AWJ20_1460 complement(<4526890..>4527633) Sugiyamaella lignohabitans 30033265 AWJ20_1461 mRNA BOR1 NC_031672.1 4528370 4530421 D AWJ20_1461 <4528370..>4530421 Sugiyamaella lignohabitans 30033266 AWJ20_1462 mRNA AWJ20_1462 NC_031672.1 4530626 4532293 R AWJ20_1462 complement(<4530626..>4532293) Sugiyamaella lignohabitans 30033267 AWJ20_1463 mRNA MMS2 NC_031672.1 4533704 4534009 D AWJ20_1463 <4533704..>4534009 Sugiyamaella lignohabitans 30033268 AWJ20_1464 mRNA SEH1 NC_031672.1 4535737 4536402 D AWJ20_1464 <4535737..>4536402 Sugiyamaella lignohabitans 30033269 AWJ20_1465 mRNA NSA1 NC_031672.1 4537216 4538511 D AWJ20_1465 <4537216..>4538511 Sugiyamaella lignohabitans 30033270 AWJ20_1466 mRNA CUE3 NC_031672.1 4538662 4540266 R AWJ20_1466 complement(<4538662..>4540266) Sugiyamaella lignohabitans 30033271 AWJ20_1467 mRNA TOS4 NC_031672.1 4542509 4544701 D AWJ20_1467 <4542509..>4544701 Sugiyamaella lignohabitans 30033272 AWJ20_1468 mRNA CDS1 NC_031672.1 4544910 4546193 R AWJ20_1468 complement(<4544910..>4546193) Sugiyamaella lignohabitans 30033273 AWJ20_1469 mRNA POF1 NC_031672.1 4548779 4551358 D AWJ20_1469 join(<4548779..4549465,4549967..>4551358) Sugiyamaella lignohabitans 30033274 AWJ20_1470 mRNA ECM33 NC_031672.1 4549937 4550839 R AWJ20_1470 complement(<4549937..>4550839) Sugiyamaella lignohabitans 30033276 AWJ20_1471 mRNA GLY1 NC_031672.1 4558721 4559752 D AWJ20_1471 <4558721..>4559752 Sugiyamaella lignohabitans 30033277 AWJ20_1472 mRNA RPS2 NC_031672.1 4561530 4562324 D AWJ20_1472 <4561530..>4562324 Sugiyamaella lignohabitans 30033278 AWJ20_1473 mRNA FPR2 NC_031672.1 4562794 4563546 R AWJ20_1473 complement(<4562794..>4563546) Sugiyamaella lignohabitans 30033279 AWJ20_1474 mRNA FPR2 NC_031672.1 4564212 4564850 R AWJ20_1474 complement(<4564212..>4564850) Sugiyamaella lignohabitans 30033280 AWJ20_1475 mRNA EMC1 NC_031672.1 4565198 4567969 R AWJ20_1475 complement(<4565198..>4567969) Sugiyamaella lignohabitans 30033281 AWJ20_1476 mRNA AWJ20_1476 NC_031672.1 4568495 4569262 D AWJ20_1476 <4568495..>4569262 Sugiyamaella lignohabitans 30033282 AWJ20_1477 mRNA SAC3 NC_031672.1 4569407 4572670 D AWJ20_1477 <4569407..>4572670 Sugiyamaella lignohabitans 30033283 AWJ20_1478 mRNA AWJ20_1478 NC_031672.1 4573014 4575218 R AWJ20_1478 complement(<4573014..>4575218) Sugiyamaella lignohabitans 30033284 AWJ20_1479 mRNA AWJ20_1479 NC_031672.1 4578459 4580372 D AWJ20_1479 <4578459..>4580372 Sugiyamaella lignohabitans 30033285 AWJ20_1480 mRNA PPZ1 NC_031672.1 4581563 4583590 R AWJ20_1480 complement(<4581563..>4583590) Sugiyamaella lignohabitans 30033287 AWJ20_1481 mRNA AWJ20_1481 NC_031672.1 4586110 4587756 R AWJ20_1481 complement(<4586110..>4587756) Sugiyamaella lignohabitans 30033288 AWJ20_1482 mRNA AWJ20_1482 NC_031672.1 4588644 4599187 D AWJ20_1482 join(<4588644..4588714,4590370..>4599187) Sugiyamaella lignohabitans 30033289 AWJ20_1483 mRNA AWJ20_1483 NC_031672.1 4599314 4600180 D AWJ20_1483 <4599314..>4600180 Sugiyamaella lignohabitans 30033290 AWJ20_1484 mRNA AWJ20_1484 NC_031672.1 4600615 4601292 R AWJ20_1484 complement(<4600615..>4601292) Sugiyamaella lignohabitans 30033291 AWJ20_1485 mRNA AWJ20_1485 NC_031672.1 4605208 4608444 D AWJ20_1485 <4605208..>4608444 Sugiyamaella lignohabitans 30033292 AWJ20_1486 mRNA RPL32 NC_031672.1 4608924 4609319 R AWJ20_1486 complement(<4608924..>4609319) Sugiyamaella lignohabitans 30033293 AWJ20_1487 mRNA MDR1 NC_031672.1 4611188 4614076 D AWJ20_1487 <4611188..>4614076 Sugiyamaella lignohabitans 30033294 AWJ20_1488 mRNA MIX17 NC_031672.1 4619150 4619614 D AWJ20_1488 <4619150..>4619614 Sugiyamaella lignohabitans 30033295 AWJ20_1489 mRNA RHO3 NC_031672.1 4620046 4620681 R AWJ20_1489 complement(<4620046..>4620681) Sugiyamaella lignohabitans 30033296 AWJ20_1490 mRNA HLJ1 NC_031672.1 4622449 4623186 D AWJ20_1490 <4622449..>4623186 Sugiyamaella lignohabitans 30033298 AWJ20_1491 mRNA POR1 NC_031672.1 4623476 4624330 R AWJ20_1491 complement(<4623476..>4624330) Sugiyamaella lignohabitans 30033299 AWJ20_1492 mRNA AWJ20_1492 NC_031672.1 4646296 4648575 R AWJ20_1492 complement(<4646296..>4648575) Sugiyamaella lignohabitans 30033300 AWJ20_1493 mRNA AWJ20_1493 NC_031672.1 4649222 4650298 D AWJ20_1493 <4649222..>4650298 Sugiyamaella lignohabitans 30033301 AWJ20_1494 mRNA AWJ20_1494 NC_031672.1 4650348 4653401 R AWJ20_1494 complement(<4650348..>4653401) Sugiyamaella lignohabitans 30033302 AWJ20_1495 mRNA AWJ20_1495 NC_031672.1 4654625 4655968 D AWJ20_1495 <4654625..>4655968 Sugiyamaella lignohabitans 30033303 AWJ20_1496 mRNA VPS24 NC_031672.1 4660657 4661334 D AWJ20_1496 <4660657..>4661334 Sugiyamaella lignohabitans 30033304 AWJ20_1497 mRNA AWJ20_1497 NC_031672.1 4662392 4665823 D AWJ20_1497 <4662392..>4665823 Sugiyamaella lignohabitans 30033305 AWJ20_1498 mRNA eaf1 NC_031672.1 4666187 4667380 R AWJ20_1498 complement(<4666187..>4667380) Sugiyamaella lignohabitans 30033306 AWJ20_1499 mRNA CCA1 NC_031672.1 4668468 4670057 D AWJ20_1499 <4668468..>4670057 Sugiyamaella lignohabitans 30033307 AWJ20_1500 mRNA CHS2 NC_031672.1 4670305 4672227 R AWJ20_1500 complement(<4670305..>4672227) Sugiyamaella lignohabitans 30033310 AWJ20_1501 mRNA AWJ20_1501 NC_031672.1 4672394 4673491 R AWJ20_1501 complement(<4672394..>4673491) Sugiyamaella lignohabitans 30033311 AWJ20_1502 mRNA AWJ20_1502 NC_031672.1 4676653 4677591 D AWJ20_1502 <4676653..>4677591 Sugiyamaella lignohabitans 30033312 AWJ20_1503 mRNA MSH6 NC_031672.1 4677812 4680886 R AWJ20_1503 complement(<4677812..>4680886) Sugiyamaella lignohabitans 30033313 AWJ20_1504 mRNA ADK2 NC_031672.1 4682483 4683169 R AWJ20_1504 complement(<4682483..>4683169) Sugiyamaella lignohabitans 30033314 AWJ20_1505 mRNA ATO2 NC_031672.1 4684160 4684957 R AWJ20_1505 complement(<4684160..>4684957) Sugiyamaella lignohabitans 30033315 AWJ20_1506 mRNA TNA1 NC_031672.1 4685811 4687316 R AWJ20_1506 complement(<4685811..>4687316) Sugiyamaella lignohabitans 30033316 AWJ20_1507 mRNA AWJ20_1507 NC_031672.1 4692800 4694827 D AWJ20_1507 <4692800..>4694827 Sugiyamaella lignohabitans 30033317 AWJ20_1508 mRNA PZF1 NC_031672.1 4695092 4696510 R AWJ20_1508 complement(<4695092..>4696510) Sugiyamaella lignohabitans 30033318 AWJ20_1509 mRNA AWJ20_1509 NC_031672.1 4698684 4702139 D AWJ20_1509 <4698684..>4702139 Sugiyamaella lignohabitans 30033319 AWJ20_1510 mRNA tsn1 NC_031672.1 4702453 4703166 R AWJ20_1510 complement(<4702453..>4703166) Sugiyamaella lignohabitans 30033321 AWJ20_1511 mRNA CCP1 NC_031672.1 4704588 4705757 D AWJ20_1511 <4704588..>4705757 Sugiyamaella lignohabitans 30033322 AWJ20_1512 mRNA PAM17 NC_031672.1 4705956 4706711 R AWJ20_1512 complement(<4705956..>4706711) Sugiyamaella lignohabitans 30033323 AWJ20_1513 mRNA GPD2 NC_031672.1 4708215 4709246 R AWJ20_1513 complement(<4708215..>4709246) Sugiyamaella lignohabitans 30033324 AWJ20_1514 mRNA AWJ20_1514 NC_031672.1 4713117 4716059 R AWJ20_1514 complement(<4713117..>4716059) Sugiyamaella lignohabitans 30033325 AWJ20_1515 mRNA AWJ20_1515 NC_031672.1 4719038 4721731 D AWJ20_1515 <4719038..>4721731 Sugiyamaella lignohabitans 30033326 AWJ20_1516 mRNA AWJ20_1516 NC_031672.1 4722776 4725556 R AWJ20_1516 complement(<4722776..>4725556) Sugiyamaella lignohabitans 30033327 AWJ20_1517 mRNA TPT1 NC_031672.1 4726237 4726962 R AWJ20_1517 complement(<4726237..>4726962) Sugiyamaella lignohabitans 30033328 AWJ20_1518 mRNA STH1 NC_031672.1 4728767 4732964 D AWJ20_1518 join(<4728767..4728886,4729011..>4732964) Sugiyamaella lignohabitans 30033329 AWJ20_1519 mRNA SYT1 NC_031672.1 4734447 4737146 D AWJ20_1519 <4734447..>4737146 Sugiyamaella lignohabitans 30033330 AWJ20_1520 mRNA AWJ20_1520 NC_031672.1 4737291 4739210 D AWJ20_1520 <4737291..>4739210 Sugiyamaella lignohabitans 30033332 AWJ20_1521 mRNA DOS2 NC_031672.1 4739510 4740808 R AWJ20_1521 complement(<4739510..>4740808) Sugiyamaella lignohabitans 30033333 AWJ20_1522 mRNA OCA6 NC_031672.1 4741312 4741986 D AWJ20_1522 <4741312..>4741986 Sugiyamaella lignohabitans 30033334 AWJ20_1523 mRNA GUT2 NC_031672.1 4742679 4744685 R AWJ20_1523 complement(<4742679..>4744685) Sugiyamaella lignohabitans 30033335 AWJ20_1524 mRNA AWJ20_1524 NC_031672.1 4746538 4747062 D AWJ20_1524 <4746538..>4747062 Sugiyamaella lignohabitans 30033336 AWJ20_1525 mRNA BAS1 NC_031672.1 4748071 4749864 D AWJ20_1525 <4748071..>4749864 Sugiyamaella lignohabitans 30033337 AWJ20_1526 mRNA PAA1 NC_031672.1 4750247 4750939 R AWJ20_1526 complement(<4750247..>4750939) Sugiyamaella lignohabitans 30033338 AWJ20_1527 mRNA DDI1 NC_031672.1 4758492 4759784 D AWJ20_1527 <4758492..>4759784 Sugiyamaella lignohabitans 30033339 AWJ20_1528 mRNA GLN3 NC_031672.1 4760072 4761526 R AWJ20_1528 complement(<4760072..>4761526) Sugiyamaella lignohabitans 30033340 AWJ20_1529 mRNA PUT3 NC_031672.1 4764313 4767096 D AWJ20_1529 <4764313..>4767096 Sugiyamaella lignohabitans 30033341 AWJ20_1530 mRNA URB1 NC_031672.1 4767160 4768380 R AWJ20_1530 complement(<4767160..>4768380) Sugiyamaella lignohabitans 30033343 AWJ20_1531 mRNA URB1 NC_031672.1 4768652 4771975 R AWJ20_1531 complement(<4768652..>4771975) Sugiyamaella lignohabitans 30033344 AWJ20_1532 mRNA ESF2 NC_031672.1 4772351 4773367 D AWJ20_1532 <4772351..>4773367 Sugiyamaella lignohabitans 30033345 AWJ20_1533 mRNA KRE5 NC_031672.1 4773412 4774896 R AWJ20_1533 complement(<4773412..>4774896) Sugiyamaella lignohabitans 30033346 AWJ20_1534 mRNA AWJ20_1534 NC_031672.1 4775348 4778008 R AWJ20_1534 complement(<4775348..>4778008) Sugiyamaella lignohabitans 30033347 AWJ20_1535 mRNA DSS1 NC_031672.1 4778318 4781014 R AWJ20_1535 complement(<4778318..>4781014) Sugiyamaella lignohabitans 30033348 AWJ20_1536 mRNA IPP1 NC_031672.1 4781524 4782279 R AWJ20_1536 complement(<4781524..>4782279) Sugiyamaella lignohabitans 30033349 AWJ20_1537 mRNA AWJ20_1537 NC_031672.1 4783701 4786376 R AWJ20_1537 complement(<4783701..>4786376) Sugiyamaella lignohabitans 30033350 AWJ20_1538 mRNA RPE1 NC_031672.1 4791664 4792233 R AWJ20_1538 complement(<4791664..>4792233) Sugiyamaella lignohabitans 30033351 AWJ20_1541 mRNA AWJ20_1541 NC_031672.1 4800562 4801185 D AWJ20_1541 <4800562..>4801185 Sugiyamaella lignohabitans 30033355 AWJ20_1542 mRNA AWJ20_1542 NC_031672.1 4801563 4802747 R AWJ20_1542 complement(<4801563..>4802747) Sugiyamaella lignohabitans 30033356 AWJ20_1543 mRNA AWJ20_1543 NC_031672.1 4803485 4805113 D AWJ20_1543 <4803485..>4805113 Sugiyamaella lignohabitans 30033357 AWJ20_1544 mRNA ODC1 NC_031672.1 4805222 4806028 R AWJ20_1544 complement(<4805222..>4806028) Sugiyamaella lignohabitans 30033358 AWJ20_1545 mRNA RRM3 NC_031672.1 4807215 4809335 R AWJ20_1545 complement(<4807215..>4809335) Sugiyamaella lignohabitans 30033359 AWJ20_1546 mRNA IDH1 NC_031672.1 4809733 4810926 R AWJ20_1546 complement(<4809733..>4810926) Sugiyamaella lignohabitans 30033360 AWJ20_1547 mRNA AWJ20_1547 NC_031672.1 4812714 4813121 D AWJ20_1547 <4812714..>4813121 Sugiyamaella lignohabitans 30033361 AWJ20_1548 mRNA ENP2 NC_031672.1 4813296 4815368 R AWJ20_1548 complement(<4813296..>4815368) Sugiyamaella lignohabitans 30033362 AWJ20_1549 mRNA AWJ20_1549 NC_031672.1 4816379 4817002 R AWJ20_1549 complement(<4816379..>4817002) Sugiyamaella lignohabitans 30033363 AWJ20_1550 mRNA AWJ20_1550 NC_031672.1 4818600 4820825 D AWJ20_1550 <4818600..>4820825 Sugiyamaella lignohabitans 30033365 AWJ20_1551 mRNA AWJ20_1551 NC_031672.1 4821173 4823281 D AWJ20_1551 <4821173..>4823281 Sugiyamaella lignohabitans 30033366 AWJ20_1552 mRNA AYR1 NC_031672.1 4823432 4824169 R AWJ20_1552 complement(<4823432..>4824169) Sugiyamaella lignohabitans 30033367 AWJ20_1553 mRNA CIC1 NC_031672.1 4826260 4827318 D AWJ20_1553 <4826260..>4827318 Sugiyamaella lignohabitans 30033368 AWJ20_1554 mRNA RDS2 NC_031672.1 4827527 4828987 R AWJ20_1554 complement(<4827527..>4828987) Sugiyamaella lignohabitans 30033369 AWJ20_1555 mRNA COX11 NC_031672.1 4829717 4830490 D AWJ20_1555 <4829717..>4830490 Sugiyamaella lignohabitans 30033370 AWJ20_1556 mRNA AWJ20_1556 NC_031672.1 4830726 4831607 R AWJ20_1556 complement(<4830726..>4831607) Sugiyamaella lignohabitans 30033371 AWJ20_1557 mRNA AWJ20_1557 NC_031672.1 4833978 4835381 D AWJ20_1557 <4833978..>4835381 Sugiyamaella lignohabitans 30033372 AWJ20_1558 mRNA NGL2 NC_031672.1 4835459 4836841 R AWJ20_1558 complement(<4835459..>4836841) Sugiyamaella lignohabitans 30033373 AWJ20_1559 mRNA AWJ20_1559 NC_031672.1 4837471 4839897 D AWJ20_1559 <4837471..>4839897 Sugiyamaella lignohabitans 30033374 AWJ20_1560 mRNA KAP114 NC_031672.1 4840059 4843133 R AWJ20_1560 complement(<4840059..>4843133) Sugiyamaella lignohabitans 30033376 AWJ20_1561 mRNA AMF1 NC_031672.1 4844960 4846576 D AWJ20_1561 <4844960..>4846576 Sugiyamaella lignohabitans 30033377 AWJ20_1562 mRNA KTR1 NC_031672.1 4847816 4849120 D AWJ20_1562 <4847816..>4849120 Sugiyamaella lignohabitans 30033378 AWJ20_1563 mRNA SNF8 NC_031672.1 4849357 4850094 D AWJ20_1563 <4849357..>4850094 Sugiyamaella lignohabitans 30033379 AWJ20_1564 mRNA AWJ20_1564 NC_031672.1 4850350 4852078 D AWJ20_1564 join(<4850350..4850455,4850502..>4852078) Sugiyamaella lignohabitans 30033380 AWJ20_1565 mRNA CDC16 NC_031672.1 4852146 4854383 R AWJ20_1565 complement(<4852146..>4854383) Sugiyamaella lignohabitans 30033381 AWJ20_1566 mRNA RNH70 NC_031672.1 4854908 4856704 D AWJ20_1566 <4854908..>4856704 Sugiyamaella lignohabitans 30033382 AWJ20_1567 mRNA AWJ20_1567 NC_031672.1 4856981 4858120 R AWJ20_1567 complement(<4856981..>4858120) Sugiyamaella lignohabitans 30033383 AWJ20_1568 mRNA LYS1 NC_031672.1 4858634 4859749 D AWJ20_1568 <4858634..>4859749 Sugiyamaella lignohabitans 30033384 AWJ20_1569 mRNA ERG27 NC_031672.1 4860221 4861024 D AWJ20_1569 <4860221..>4861024 Sugiyamaella lignohabitans 30033385 AWJ20_1570 mRNA PTR2 NC_031672.1 4861450 4863261 R AWJ20_1570 complement(<4861450..>4863261) Sugiyamaella lignohabitans 30033387 AWJ20_1571 mRNA AWJ20_1571 NC_031672.1 4866201 4867028 R AWJ20_1571 complement(<4866201..>4867028) Sugiyamaella lignohabitans 30033388 AWJ20_1572 mRNA SAC6 NC_031672.1 4867822 4869895 D AWJ20_1572 join(<4867822..4867842,4867997..>4869895) Sugiyamaella lignohabitans 30033389 AWJ20_1573 mRNA MCM7 NC_031672.1 4870051 4872420 R AWJ20_1573 complement(<4870051..>4872420) Sugiyamaella lignohabitans 30033390 AWJ20_1574 mRNA GCY1 NC_031672.1 4875643 4876572 R AWJ20_1574 complement(<4875643..>4876572) Sugiyamaella lignohabitans 30033391 AWJ20_1575 mRNA AWJ20_1575 NC_031672.1 4876950 4878815 R AWJ20_1575 complement(<4876950..>4878815) Sugiyamaella lignohabitans 30033392 AWJ20_1576 mRNA FDH1 NC_031672.1 4879881 4880921 D AWJ20_1576 <4879881..>4880921 Sugiyamaella lignohabitans 30033393 AWJ20_1577 mRNA FAL1 NC_031672.1 4881090 4881947 R AWJ20_1577 complement(<4881090..>4881947) Sugiyamaella lignohabitans 30033394 AWJ20_1578 mRNA FAL1 NC_031672.1 4882012 4882440 R AWJ20_1578 complement(<4882012..>4882440) Sugiyamaella lignohabitans 30033395 AWJ20_1579 mRNA DAS2 NC_031672.1 4882780 4883637 D AWJ20_1579 <4882780..>4883637 Sugiyamaella lignohabitans 30033396 AWJ20_1580 mRNA AWJ20_1580 NC_031672.1 4883893 4884732 D AWJ20_1580 <4883893..>4884732 Sugiyamaella lignohabitans 30033398 AWJ20_1581 mRNA NPR2 NC_031672.1 4884804 4886132 R AWJ20_1581 complement(<4884804..>4886132) Sugiyamaella lignohabitans 30033399 AWJ20_1582 mRNA HSP60 NC_031672.1 4887045 4888766 D AWJ20_1582 <4887045..>4888766 Sugiyamaella lignohabitans 30033400 AWJ20_1585 mRNA HTZ1 NC_031672.1 4890788 4891183 D AWJ20_1585 <4890788..>4891183 Sugiyamaella lignohabitans 30033403 AWJ20_1586 mRNA GCV1 NC_031672.1 4891926 4893143 D AWJ20_1586 <4891926..>4893143 Sugiyamaella lignohabitans 30033404 AWJ20_1587 mRNA AWJ20_1587 NC_031672.1 4893253 4893681 R AWJ20_1587 complement(<4893253..>4893681) Sugiyamaella lignohabitans 30033405 AWJ20_1588 mRNA ATP3 NC_031672.1 4895415 4896152 D AWJ20_1588 <4895415..>4896152 Sugiyamaella lignohabitans 30033406 AWJ20_1589 mRNA AWJ20_1589 NC_031672.1 4896660 4897931 D AWJ20_1589 <4896660..>4897931 Sugiyamaella lignohabitans 30033407 AWJ20_1590 mRNA CST26 NC_031672.1 4898137 4899372 R AWJ20_1590 complement(<4898137..>4899372) Sugiyamaella lignohabitans 30033409 AWJ20_1591 mRNA QDR3 NC_031672.1 4900317 4902167 D AWJ20_1591 <4900317..>4902167 Sugiyamaella lignohabitans 30033410 AWJ20_1592 mRNA HRD1 NC_031672.1 4903858 4905342 D AWJ20_1592 <4903858..>4905342 Sugiyamaella lignohabitans 30033411 AWJ20_1593 mRNA AWJ20_1593 NC_031672.1 4905451 4906689 R AWJ20_1593 complement(<4905451..>4906689) Sugiyamaella lignohabitans 30033412 AWJ20_1594 mRNA AWJ20_1594 NC_031672.1 4906863 4907630 R AWJ20_1594 complement(<4906863..>4907630) Sugiyamaella lignohabitans 30033413 AWJ20_1595 mRNA AWJ20_1595 NC_031672.1 4908389 4909999 R AWJ20_1595 complement(<4908389..>4909999) Sugiyamaella lignohabitans 30033414 AWJ20_1596 mRNA GRX2 NC_031672.1 4910375 4910731 D AWJ20_1596 <4910375..>4910731 Sugiyamaella lignohabitans 30033415 AWJ20_1597 mRNA AWJ20_1597 NC_031672.1 4910932 4912122 R AWJ20_1597 complement(<4910932..>4912122) Sugiyamaella lignohabitans 30033416 AWJ20_1598 mRNA AWJ20_1598 NC_031672.1 4913172 4913852 R AWJ20_1598 complement(<4913172..>4913852) Sugiyamaella lignohabitans 30033417 AWJ20_1599 mRNA AWJ20_1599 NC_031672.1 4918136 4919398 D AWJ20_1599 <4918136..>4919398 Sugiyamaella lignohabitans 30033418 AWJ20_1600 mRNA AIM25 NC_031672.1 4920653 4921765 R AWJ20_1600 complement(<4920653..>4921765) Sugiyamaella lignohabitans 30033421 AWJ20_1601 mRNA RSM26 NC_031672.1 4922299 4923084 D AWJ20_1601 <4922299..>4923084 Sugiyamaella lignohabitans 30033422 AWJ20_1602 mRNA VPS25 NC_031672.1 4924201 4924836 D AWJ20_1602 <4924201..>4924836 Sugiyamaella lignohabitans 30033423 AWJ20_1603 mRNA REG1 NC_031672.1 4927695 4931030 D AWJ20_1603 <4927695..>4931030 Sugiyamaella lignohabitans 30033424 AWJ20_1604 mRNA VPS54 NC_031672.1 4931620 4934535 D AWJ20_1604 <4931620..>4934535 Sugiyamaella lignohabitans 30033425 AWJ20_1605 mRNA AWJ20_1605 NC_031672.1 4934662 4935669 D AWJ20_1605 <4934662..>4935669 Sugiyamaella lignohabitans 30033426 AWJ20_1606 mRNA ELM3 NC_031672.1 4937060 4938541 D AWJ20_1606 <4937060..>4938541 Sugiyamaella lignohabitans 30033427 AWJ20_1607 mRNA DRS1 NC_031672.1 4938634 4940931 R AWJ20_1607 complement(<4938634..>4940931) Sugiyamaella lignohabitans 30033428 AWJ20_1608 mRNA MRD1 NC_031672.1 4941177 4943678 D AWJ20_1608 <4941177..>4943678 Sugiyamaella lignohabitans 30033429 AWJ20_1609 mRNA ENV9 NC_031672.1 4944086 4945051 D AWJ20_1609 <4944086..>4945051 Sugiyamaella lignohabitans 30033430 AWJ20_1610 mRNA ENV9 NC_031672.1 4945244 4946209 R AWJ20_1610 complement(<4945244..>4946209) Sugiyamaella lignohabitans 30033432 AWJ20_1611 mRNA NAN1 NC_031672.1 4947140 4949533 D AWJ20_1611 <4947140..>4949533 Sugiyamaella lignohabitans 30033433 AWJ20_1612 mRNA KAP120 NC_031672.1 4951369 4954329 D AWJ20_1612 <4951369..>4954329 Sugiyamaella lignohabitans 30033434 AWJ20_1613 mRNA PTP2 NC_031672.1 4954398 4957256 R AWJ20_1613 complement(<4954398..>4957256) Sugiyamaella lignohabitans 30033435 AWJ20_1614 mRNA RNY1 NC_031672.1 4961462 4962730 R AWJ20_1614 complement(<4961462..>4962730) Sugiyamaella lignohabitans 30033436 AWJ20_1615 mRNA AWJ20_1615 NC_031672.1 4963082 4965064 R AWJ20_1615 complement(<4963082..>4965064) Sugiyamaella lignohabitans 30033437 AWJ20_1616 mRNA RNR1 NC_031672.1 4965400 4967766 R AWJ20_1616 complement(<4965400..>4967766) Sugiyamaella lignohabitans 30033438 AWJ20_1617 mRNA VPS30 NC_031672.1 4968383 4969825 R AWJ20_1617 complement(<4968383..>4969825) Sugiyamaella lignohabitans 30033439 AWJ20_1618 mRNA GEP3 NC_031672.1 4970275 4971906 R AWJ20_1618 complement(<4970275..>4971906) Sugiyamaella lignohabitans 30033440 AWJ20_1619 mRNA MEP3 NC_031672.1 4972333 4973940 R AWJ20_1619 complement(<4972333..>4973940) Sugiyamaella lignohabitans 30033441 AWJ20_1620 mRNA AWJ20_1620 NC_031672.1 4974414 4976042 R AWJ20_1620 complement(<4974414..>4976042) Sugiyamaella lignohabitans 30033443 AWJ20_1621 mRNA SOG2 NC_031672.1 4976201 4979170 R AWJ20_1621 complement(<4976201..>4979170) Sugiyamaella lignohabitans 30033444 AWJ20_1622 mRNA GSP2 NC_031672.1 4979790 4980179 R AWJ20_1622 complement(<4979790..>4980179) Sugiyamaella lignohabitans 30033445 AWJ20_1623 mRNA AWJ20_1623 NC_031672.1 4982728 4983645 D AWJ20_1623 <4982728..>4983645 Sugiyamaella lignohabitans 30033446 AWJ20_1624 mRNA AWJ20_1624 NC_031672.1 4983685 4984317 R AWJ20_1624 complement(<4983685..>4984317) Sugiyamaella lignohabitans 30033447 AWJ20_1625 mRNA TFB6 NC_031672.1 4988536 4989165 D AWJ20_1625 <4988536..>4989165 Sugiyamaella lignohabitans 30033448 AWJ20_1626 mRNA ULS1 NC_031672.1 4989316 4991352 R AWJ20_1626 complement(<4989316..>4991352) Sugiyamaella lignohabitans 30033449 AWJ20_1627 mRNA ULS1 NC_031672.1 4991398 4993407 R AWJ20_1627 complement(<4991398..>4993407) Sugiyamaella lignohabitans 30033450 AWJ20_1628 mRNA PDC1 NC_031672.1 4993946 4995739 R AWJ20_1628 complement(<4993946..>4995739) Sugiyamaella lignohabitans 30033451 AWJ20_1629 mRNA PCT1 NC_031672.1 4997146 4998708 D AWJ20_1629 <4997146..>4998708 Sugiyamaella lignohabitans 30033452 AWJ20_1630 mRNA RAD2 NC_031672.1 5002073 5005195 R AWJ20_1630 complement(<5002073..>5005195) Sugiyamaella lignohabitans 30033454 AWJ20_1631 mRNA IKI1 NC_031672.1 5005924 5006391 D AWJ20_1631 <5005924..>5006391 Sugiyamaella lignohabitans 30033455 AWJ20_1632 mRNA APL6 NC_031672.1 5006849 5009104 D AWJ20_1632 <5006849..>5009104 Sugiyamaella lignohabitans 30033456 AWJ20_1633 mRNA HSH155 NC_031672.1 5009207 5012638 R AWJ20_1633 complement(<5009207..>5012638) Sugiyamaella lignohabitans 30033457 AWJ20_1634 mRNA GPI16 NC_031672.1 5012854 5014683 D AWJ20_1634 <5012854..>5014683 Sugiyamaella lignohabitans 30033458 AWJ20_1635 mRNA BUB1 NC_031672.1 5014770 5016362 R AWJ20_1635 complement(<5014770..>5016362) Sugiyamaella lignohabitans 30033459 AWJ20_1636 mRNA MAD3 NC_031672.1 5016591 5017637 R AWJ20_1636 complement(<5016591..>5017637) Sugiyamaella lignohabitans 30033460 AWJ20_1637 mRNA ADE2 NC_031672.1 5017919 5019619 D AWJ20_1637 <5017919..>5019619 Sugiyamaella lignohabitans 30033461 AWJ20_1638 mRNA AWJ20_1638 NC_031672.1 5019238 5019510 R AWJ20_1638 complement(<5019238..>5019510) Sugiyamaella lignohabitans 30033462 AWJ20_1639 mRNA VTC4 NC_031672.1 5019793 5022000 R AWJ20_1639 complement(<5019793..>5022000) Sugiyamaella lignohabitans 30033463 AWJ20_1640 mRNA SCL1 NC_031672.1 5025136 5025561 D AWJ20_1640 <5025136..>5025561 Sugiyamaella lignohabitans 30033465 AWJ20_1641 mRNA AGE2 NC_031672.1 5027240 5028820 D AWJ20_1641 <5027240..>5028820 Sugiyamaella lignohabitans 30033466 AWJ20_1642 mRNA NOP15 NC_031672.1 5029048 5029944 R AWJ20_1642 complement(<5029048..>5029944) Sugiyamaella lignohabitans 30033467 AWJ20_1643 mRNA CPT1 NC_031672.1 5032323 5033330 R AWJ20_1643 complement(<5032323..>5033330) Sugiyamaella lignohabitans 30033468 AWJ20_1645 mRNA AWJ20_1645 NC_031672.1 5035381 5035764 D AWJ20_1645 <5035381..>5035764 Sugiyamaella lignohabitans 30033470 AWJ20_1646 mRNA PIC2 NC_031672.1 5036873 5038517 D AWJ20_1646 join(<5036873..5037107,5037667..>5038517) Sugiyamaella lignohabitans 30033471 AWJ20_1647 mRNA TEP1 NC_031672.1 5038901 5039926 D AWJ20_1647 <5038901..>5039926 Sugiyamaella lignohabitans 30033472 AWJ20_1648 mRNA LSM12 NC_031672.1 5040086 5040706 R AWJ20_1648 complement(<5040086..>5040706) Sugiyamaella lignohabitans 30033473 AWJ20_1649 mRNA FAR11 NC_031672.1 5041730 5043817 D AWJ20_1649 <5041730..>5043817 Sugiyamaella lignohabitans 30033474 AWJ20_1650 mRNA AWJ20_1650 NC_031672.1 5045026 5047401 R AWJ20_1650 complement(<5045026..>5047401) Sugiyamaella lignohabitans 30033476 AWJ20_1651 mRNA AWJ20_1651 NC_031672.1 5047869 5048501 R AWJ20_1651 complement(<5047869..>5048501) Sugiyamaella lignohabitans 30033477 AWJ20_1652 mRNA HOS2 NC_031672.1 5051057 5052247 R AWJ20_1652 complement(<5051057..>5052247) Sugiyamaella lignohabitans 30033478 AWJ20_1653 mRNA SMC3 NC_031672.1 5053503 5056841 D AWJ20_1653 <5053503..>5056841 Sugiyamaella lignohabitans 30033479 AWJ20_1654 mRNA FMS1 NC_031672.1 5057098 5058801 R AWJ20_1654 complement(<5057098..>5058801) Sugiyamaella lignohabitans 30033480 AWJ20_1655 mRNA HOL1 NC_031672.1 5062045 5063772 D AWJ20_1655 <5062045..>5063772 Sugiyamaella lignohabitans 30033481 AWJ20_1657 mRNA AGC1 NC_031672.1 5066091 5068121 D AWJ20_1657 <5066091..>5068121 Sugiyamaella lignohabitans 30033483 AWJ20_1658 mRNA UBP15 NC_031672.1 5069882 5073496 D AWJ20_1658 <5069882..>5073496 Sugiyamaella lignohabitans 30033484 AWJ20_1659 mRNA ECM25 NC_031672.1 5074088 5075872 D AWJ20_1659 <5074088..>5075872 Sugiyamaella lignohabitans 30033485 AWJ20_1660 mRNA MET6 NC_031672.1 5077127 5079430 D AWJ20_1660 <5077127..>5079430 Sugiyamaella lignohabitans 30033487 AWJ20_1661 mRNA MED6 NC_031672.1 5079894 5080736 R AWJ20_1661 complement(<5079894..>5080736) Sugiyamaella lignohabitans 30033488 AWJ20_1662 mRNA AWJ20_1662 NC_031672.1 5080923 5084066 D AWJ20_1662 <5080923..>5084066 Sugiyamaella lignohabitans 30033489 AWJ20_1663 mRNA FYV4 NC_031672.1 5086228 5086689 D AWJ20_1663 <5086228..>5086689 Sugiyamaella lignohabitans 30033490 AWJ20_1664 mRNA HNT2 NC_031672.1 5086940 5087470 R AWJ20_1664 complement(<5086940..>5087470) Sugiyamaella lignohabitans 30033491 AWJ20_1665 mRNA DAG7 NC_031672.1 5088185 5088586 D AWJ20_1665 <5088185..>5088586 Sugiyamaella lignohabitans 30033492 AWJ20_1666 mRNA CMK1 NC_031672.1 5091479 5092849 D AWJ20_1666 <5091479..>5092849 Sugiyamaella lignohabitans 30033493 AWJ20_1667 mRNA grt1 NC_031672.1 5096469 5098694 D AWJ20_1667 <5096469..>5098694 Sugiyamaella lignohabitans 30033494 AWJ20_1668 mRNA AWJ20_1668 NC_031672.1 5098970 5100112 R AWJ20_1668 complement(<5098970..>5100112) Sugiyamaella lignohabitans 30033495 AWJ20_1671 mRNA ERG1 NC_031672.1 5102654 5103166 D AWJ20_1671 <5102654..>5103166 Sugiyamaella lignohabitans 30033499 AWJ20_1672 mRNA ERG1 NC_031672.1 5103538 5104200 D AWJ20_1672 <5103538..>5104200 Sugiyamaella lignohabitans 30033500 AWJ20_1673 mRNA DAL7 NC_031672.1 5105520 5107163 R AWJ20_1673 complement(<5105520..>5107163) Sugiyamaella lignohabitans 30033501 AWJ20_1674 mRNA APS3 NC_031672.1 5109002 5109394 D AWJ20_1674 <5109002..>5109394 Sugiyamaella lignohabitans 30033502 AWJ20_1675 mRNA AWJ20_1675 NC_031672.1 5110420 5112237 D AWJ20_1675 <5110420..>5112237 Sugiyamaella lignohabitans 30033503 AWJ20_1676 mRNA CDC42 NC_031672.1 5115390 5115965 D AWJ20_1676 <5115390..>5115965 Sugiyamaella lignohabitans 30033504 AWJ20_1677 mRNA TCP1 NC_031672.1 5117289 5118809 D AWJ20_1677 <5117289..>5118809 Sugiyamaella lignohabitans 30033505 AWJ20_1678 mRNA UPC2 NC_031672.1 5119592 5121778 D AWJ20_1678 <5119592..>5121778 Sugiyamaella lignohabitans 30033506 AWJ20_1679 mRNA MBF1 NC_031672.1 5122084 5122545 R AWJ20_1679 complement(<5122084..>5122545) Sugiyamaella lignohabitans 30033507 AWJ20_1680 mRNA AWJ20_1680 NC_031672.1 5123001 5125082 D AWJ20_1680 <5123001..>5125082 Sugiyamaella lignohabitans 30033509 AWJ20_1681 mRNA STL1 NC_031672.1 5127839 5129446 R AWJ20_1681 complement(<5127839..>5129446) Sugiyamaella lignohabitans 30033510 AWJ20_1682 mRNA GYP1 NC_031672.1 5131245 5132420 R AWJ20_1682 complement(<5131245..>5132420) Sugiyamaella lignohabitans 30033511 AWJ20_1683 mRNA MTD1 NC_031672.1 5134267 5135208 D AWJ20_1683 <5134267..>5135208 Sugiyamaella lignohabitans 30033512 AWJ20_1684 mRNA RPF2 NC_031672.1 5135422 5136273 R AWJ20_1684 complement(<5135422..>5136273) Sugiyamaella lignohabitans 30033513 AWJ20_1685 mRNA NUP133 NC_031672.1 5136917 5139202 D AWJ20_1685 <5136917..>5139202 Sugiyamaella lignohabitans 30033514 AWJ20_1686 mRNA NUP133 NC_031672.1 5139874 5140953 D AWJ20_1686 <5139874..>5140953 Sugiyamaella lignohabitans 30033515 AWJ20_1687 mRNA DAD2 NC_031672.1 5141094 5141393 R AWJ20_1687 complement(<5141094..>5141393) Sugiyamaella lignohabitans 30033516 AWJ20_1688 mRNA SEC6 NC_031672.1 5143166 5145433 R AWJ20_1688 complement(<5143166..>5145433) Sugiyamaella lignohabitans 30033517 AWJ20_1689 mRNA AWJ20_1689 NC_031672.1 5145926 5146735 R AWJ20_1689 complement(<5145926..>5146735) Sugiyamaella lignohabitans 30033518 AWJ20_1690 mRNA CTK1 NC_031672.1 5147190 5148353 R AWJ20_1690 complement(<5147190..>5148353) Sugiyamaella lignohabitans 30033520 AWJ20_1691 mRNA MRS2 NC_031672.1 5148992 5150488 D AWJ20_1691 <5148992..>5150488 Sugiyamaella lignohabitans 30033521 AWJ20_1692 mRNA SGV1 NC_031672.1 5150824 5152638 R AWJ20_1692 complement(<5150824..>5152638) Sugiyamaella lignohabitans 30033522 AWJ20_1693 mRNA ETR1 NC_031672.1 5153164 5154318 D AWJ20_1693 <5153164..>5154318 Sugiyamaella lignohabitans 30033523 AWJ20_1694 mRNA GAT2 NC_031672.1 5165829 5168105 D AWJ20_1694 <5165829..>5168105 Sugiyamaella lignohabitans 30033524 AWJ20_1695 mRNA UBC11 NC_031672.1 5172875 5173285 D AWJ20_1695 <5172875..>5173285 Sugiyamaella lignohabitans 30033525 AWJ20_1696 mRNA AWJ20_1696 NC_031672.1 5173722 5174495 R AWJ20_1696 complement(<5173722..>5174495) Sugiyamaella lignohabitans 30033526 AWJ20_1697 mRNA AWJ20_1697 NC_031672.1 5175197 5176432 R AWJ20_1697 complement(<5175197..>5176432) Sugiyamaella lignohabitans 30033527 AWJ20_1698 mRNA GIS2 NC_031672.1 5180023 5181035 R AWJ20_1698 complement(join(<5180023..5180732,5180834..>5181035)) Sugiyamaella lignohabitans 30033528 AWJ20_1700 mRNA AWJ20_1700 NC_031672.1 5187358 5190330 D AWJ20_1700 <5187358..>5190330 Sugiyamaella lignohabitans 30033532 AWJ20_1701 mRNA AWJ20_1701 NC_031672.1 5190965 5191336 R AWJ20_1701 complement(<5190965..>5191336) Sugiyamaella lignohabitans 30033533 AWJ20_1702 mRNA GCD6 NC_031672.1 5192353 5194398 D AWJ20_1702 <5192353..>5194398 Sugiyamaella lignohabitans 30033534 AWJ20_1703 mRNA AWJ20_1703 NC_031672.1 5195286 5199734 D AWJ20_1703 <5195286..>5199734 Sugiyamaella lignohabitans 30033535 AWJ20_1704 mRNA SLN1 NC_031672.1 5200108 5203182 D AWJ20_1704 <5200108..>5203182 Sugiyamaella lignohabitans 30033536 AWJ20_1705 mRNA MSB1 NC_031672.1 5207787 5212853 D AWJ20_1705 <5207787..>5212853 Sugiyamaella lignohabitans 30033537 AWJ20_1706 mRNA AWJ20_1706 NC_031672.1 5213394 5214956 R AWJ20_1706 complement(<5213394..>5214956) Sugiyamaella lignohabitans 30033538 AWJ20_1707 mRNA AWJ20_1707 NC_031672.1 5215681 5216580 R AWJ20_1707 complement(<5215681..>5216580) Sugiyamaella lignohabitans 30033539 AWJ20_1708 mRNA KTR4 NC_031672.1 5217620 5218642 D AWJ20_1708 <5217620..>5218642 Sugiyamaella lignohabitans 30033540 AWJ20_1709 mRNA KIC1 NC_031672.1 5218841 5220364 R AWJ20_1709 complement(<5218841..>5220364) Sugiyamaella lignohabitans 30033541 AWJ20_1710 mRNA KIP1 NC_031672.1 5221579 5224824 D AWJ20_1710 <5221579..>5224824 Sugiyamaella lignohabitans 30033543 AWJ20_1711 mRNA AWJ20_1711 NC_031672.1 5225023 5225610 R AWJ20_1711 complement(<5225023..>5225610) Sugiyamaella lignohabitans 30033544 AWJ20_1712 mRNA AWJ20_1712 NC_031672.1 5226253 5227161 R AWJ20_1712 complement(<5226253..>5227161) Sugiyamaella lignohabitans 30033545 AWJ20_1713 mRNA MIS1 NC_031672.1 5229871 5232810 D AWJ20_1713 <5229871..>5232810 Sugiyamaella lignohabitans 30033546 AWJ20_1714 mRNA HEM14 NC_031672.1 5233144 5235366 D AWJ20_1714 <5233144..>5235366 Sugiyamaella lignohabitans 30033547 AWJ20_1715 mRNA GOS1 NC_031672.1 5235508 5236176 R AWJ20_1715 complement(<5235508..>5236176) Sugiyamaella lignohabitans 30033548 AWJ20_1716 mRNA CLD1 NC_031672.1 5237188 5238675 D AWJ20_1716 <5237188..>5238675 Sugiyamaella lignohabitans 30033549 AWJ20_1717 mRNA FAA4 NC_031672.1 5238817 5240877 R AWJ20_1717 complement(<5238817..>5240877) Sugiyamaella lignohabitans 30033550 AWJ20_1718 mRNA NUP145 NC_031672.1 5243287 5248053 D AWJ20_1718 <5243287..>5248053 Sugiyamaella lignohabitans 30033551 AWJ20_1719 mRNA AWJ20_1719 NC_031672.1 5248421 5250115 D AWJ20_1719 <5248421..>5250115 Sugiyamaella lignohabitans 30033552 AWJ20_1720 mRNA NBP35 NC_031672.1 5250276 5251250 R AWJ20_1720 complement(<5250276..>5251250) Sugiyamaella lignohabitans 30033554 AWJ20_1721 mRNA ISW2 NC_031672.1 5253278 5255989 D AWJ20_1721 <5253278..>5255989 Sugiyamaella lignohabitans 30033555 AWJ20_1722 mRNA GPX2 NC_031672.1 5256161 5256670 R AWJ20_1722 complement(<5256161..>5256670) Sugiyamaella lignohabitans 30033556 AWJ20_1723 mRNA TRL1 NC_031672.1 5260525 5261358 D AWJ20_1723 <5260525..>5261358 Sugiyamaella lignohabitans 30033557 AWJ20_1724 mRNA ERG8 NC_031672.1 5261469 5262860 R AWJ20_1724 complement(<5261469..>5262860) Sugiyamaella lignohabitans 30033558 AWJ20_1725 mRNA CYT2 NC_031672.1 5263082 5263864 D AWJ20_1725 <5263082..>5263864 Sugiyamaella lignohabitans 30033559 AWJ20_1726 mRNA TIM10 NC_031672.1 5264280 5264531 R AWJ20_1726 complement(<5264280..>5264531) Sugiyamaella lignohabitans 30033560 AWJ20_1727 mRNA CDC33 NC_031672.1 5267116 5267847 D AWJ20_1727 <5267116..>5267847 Sugiyamaella lignohabitans 30033561 AWJ20_1728 mRNA AWJ20_1728 NC_031672.1 5268144 5269580 R AWJ20_1728 complement(<5268144..>5269580) Sugiyamaella lignohabitans 30033562 AWJ20_1729 mRNA VNX1 NC_031672.1 5271967 5275515 D AWJ20_1729 <5271967..>5275515 Sugiyamaella lignohabitans 30033563 AWJ20_1730 mRNA AWJ20_1730 NC_031672.1 5275963 5276874 D AWJ20_1730 <5275963..>5276874 Sugiyamaella lignohabitans 30033565 AWJ20_1731 mRNA TSC13 NC_031672.1 5276979 5277965 R AWJ20_1731 complement(<5276979..>5277965) Sugiyamaella lignohabitans 30033566 AWJ20_1732 mRNA AWJ20_1732 NC_031672.1 5278548 5281133 D AWJ20_1732 <5278548..>5281133 Sugiyamaella lignohabitans 30033567 AWJ20_1733 mRNA CDC60 NC_031672.1 5281255 5284404 R AWJ20_1733 complement(<5281255..>5284404) Sugiyamaella lignohabitans 30033568 AWJ20_1734 mRNA GCD1 NC_031672.1 5285025 5286323 R AWJ20_1734 complement(<5285025..>5286323) Sugiyamaella lignohabitans 30033569 AWJ20_1735 mRNA RPT4 NC_031672.1 5286954 5287184 D AWJ20_1735 <5286954..>5287184 Sugiyamaella lignohabitans 30033570 AWJ20_1736 mRNA RPT4 NC_031672.1 5287485 5288333 D AWJ20_1736 <5287485..>5288333 Sugiyamaella lignohabitans 30033571 AWJ20_1737 mRNA AWJ20_1737 NC_031672.1 5288532 5290058 R AWJ20_1737 complement(<5288532..>5290058) Sugiyamaella lignohabitans 30033572 AWJ20_1738 mRNA AWJ20_1738 NC_031672.1 5291143 5292570 R AWJ20_1738 complement(<5291143..>5292570) Sugiyamaella lignohabitans 30033573 AWJ20_1739 mRNA HNT3 NC_031672.1 5293559 5294071 R AWJ20_1739 complement(<5293559..>5294071) Sugiyamaella lignohabitans 30033574 AWJ20_1740 mRNA SEC61 NC_031672.1 5295229 5296539 D AWJ20_1740 <5295229..>5296539 Sugiyamaella lignohabitans 30033576 AWJ20_1741 mRNA AWJ20_1741 NC_031672.1 5298975 5299310 D AWJ20_1741 <5298975..>5299310 Sugiyamaella lignohabitans 30033577 AWJ20_1742 mRNA YVH1 NC_031672.1 5305069 5306742 D AWJ20_1742 <5305069..>5306742 Sugiyamaella lignohabitans 30033578 AWJ20_1743 mRNA APE2 NC_031672.1 5306963 5309650 R AWJ20_1743 complement(<5306963..>5309650) Sugiyamaella lignohabitans 30033579 AWJ20_1744 mRNA AWJ20_1744 NC_031672.1 5310419 5311219 R AWJ20_1744 complement(<5310419..>5311219) Sugiyamaella lignohabitans 30033580 AWJ20_1745 mRNA AWJ20_1745 NC_031672.1 5314283 5316616 D AWJ20_1745 <5314283..>5316616 Sugiyamaella lignohabitans 30033581 AWJ20_1746 mRNA NAM8 NC_031672.1 5316854 5317486 R AWJ20_1746 complement(<5316854..>5317486) Sugiyamaella lignohabitans 30033582 AWJ20_1747 mRNA SPP1 NC_031672.1 5317639 5318976 D AWJ20_1747 <5317639..>5318976 Sugiyamaella lignohabitans 30033583 AWJ20_1748 mRNA HAT2 NC_031672.1 5319146 5321131 R AWJ20_1748 complement(join(<5319146..5320312,5321126..>5321131)) Sugiyamaella lignohabitans 30033584 AWJ20_1749 mRNA AWJ20_1749 NC_031672.1 5322714 5323661 R AWJ20_1749 complement(<5322714..>5323661) Sugiyamaella lignohabitans 30033585 AWJ20_1750 mRNA AWJ20_1750 NC_031672.1 5325257 5327227 D AWJ20_1750 <5325257..>5327227 Sugiyamaella lignohabitans 30033587 AWJ20_1751 mRNA RNA1 NC_031672.1 5328648 5329835 R AWJ20_1751 complement(<5328648..>5329835) Sugiyamaella lignohabitans 30033588 AWJ20_1752 mRNA AHA1 NC_031672.1 5330617 5331357 D AWJ20_1752 <5330617..>5331357 Sugiyamaella lignohabitans 30033589 AWJ20_1753 mRNA VPS72 NC_031672.1 5331519 5333501 R AWJ20_1753 complement(<5331519..>5333501) Sugiyamaella lignohabitans 30033590 AWJ20_1756 mRNA WRS1 NC_031672.1 5337564 5338847 D AWJ20_1756 <5337564..>5338847 Sugiyamaella lignohabitans 30033593 AWJ20_1757 mRNA RIB3 NC_031672.1 5338965 5339582 R AWJ20_1757 complement(<5338965..>5339582) Sugiyamaella lignohabitans 30033594 AWJ20_1758 mRNA ALD4 NC_031672.1 5341554 5343041 D AWJ20_1758 <5341554..>5343041 Sugiyamaella lignohabitans 30033595 AWJ20_1759 mRNA AWJ20_1759 NC_031672.1 5344489 5351766 D AWJ20_1759 <5344489..>5351766 Sugiyamaella lignohabitans 30033596 AWJ20_1760 mRNA SKY1 NC_031672.1 5353171 5355306 D AWJ20_1760 <5353171..>5355306 Sugiyamaella lignohabitans 30033598 AWJ20_1761 mRNA CWC27 NC_031672.1 5355455 5356564 R AWJ20_1761 complement(<5355455..>5356564) Sugiyamaella lignohabitans 30033599 AWJ20_1762 mRNA GUS1 NC_031672.1 5356791 5358995 D AWJ20_1762 <5356791..>5358995 Sugiyamaella lignohabitans 30033600 AWJ20_1763 mRNA RMD8 NC_031672.1 5360586 5363054 R AWJ20_1763 complement(<5360586..>5363054) Sugiyamaella lignohabitans 30033601 AWJ20_1764 mRNA RTF1 NC_031672.1 5363716 5365371 D AWJ20_1764 <5363716..>5365371 Sugiyamaella lignohabitans 30033602 AWJ20_1765 mRNA AWJ20_1765 NC_031672.1 5365721 5366320 D AWJ20_1765 <5365721..>5366320 Sugiyamaella lignohabitans 30033603 AWJ20_1766 mRNA ARG5,6 NC_031672.1 5368632 5371262 D AWJ20_1766 <5368632..>5371262 Sugiyamaella lignohabitans 30033604 AWJ20_1767 mRNA RAD18 NC_031672.1 5374181 5375107 R AWJ20_1767 complement(<5374181..>5375107) Sugiyamaella lignohabitans 30033605 AWJ20_1768 mRNA LSB6 NC_031672.1 5375506 5378100 R AWJ20_1768 complement(<5375506..>5378100) Sugiyamaella lignohabitans 30033606 AWJ20_1769 mRNA YPS1 NC_031672.1 5378609 5380396 R AWJ20_1769 complement(<5378609..>5380396) Sugiyamaella lignohabitans 30033607 AWJ20_1770 mRNA AMF1 NC_031672.1 5384771 5386348 R AWJ20_1770 complement(<5384771..>5386348) Sugiyamaella lignohabitans 30033609 AWJ20_1771 mRNA AWJ20_1771 NC_031672.1 5387144 5388715 D AWJ20_1771 <5387144..>5388715 Sugiyamaella lignohabitans 30033610 AWJ20_1772 mRNA CRG1 NC_031672.1 5390519 5391346 D AWJ20_1772 <5390519..>5391346 Sugiyamaella lignohabitans 30033611 AWJ20_1773 mRNA CAR1 NC_031672.1 5391493 5392665 R AWJ20_1773 complement(<5391493..>5392665) Sugiyamaella lignohabitans 30033612 AWJ20_1774 mRNA CWH43 NC_031672.1 5394977 5397550 D AWJ20_1774 <5394977..>5397550 Sugiyamaella lignohabitans 30033613 AWJ20_1775 mRNA ECM14 NC_031672.1 5398967 5400790 D AWJ20_1775 <5398967..>5400790 Sugiyamaella lignohabitans 30033614 AWJ20_1776 mRNA AWJ20_1776 NC_031672.1 5401368 5402009 D AWJ20_1776 <5401368..>5402009 Sugiyamaella lignohabitans 30033615 AWJ20_1777 mRNA AWJ20_1777 NC_031672.1 5402305 5403936 D AWJ20_1777 <5402305..>5403936 Sugiyamaella lignohabitans 30033616 AWJ20_1778 mRNA RAX2 NC_031672.1 5404077 5406671 R AWJ20_1778 complement(<5404077..>5406671) Sugiyamaella lignohabitans 30033617 AWJ20_1779 mRNA RAX2 NC_031672.1 5406704 5408002 R AWJ20_1779 complement(<5406704..>5408002) Sugiyamaella lignohabitans 30033618 AWJ20_1780 mRNA AWJ20_1780 NC_031672.1 5409668 5411938 R AWJ20_1780 complement(<5409668..>5411938) Sugiyamaella lignohabitans 30033620 AWJ20_1781 mRNA ATH1 NC_031672.1 5413998 5415650 D AWJ20_1781 <5413998..>5415650 Sugiyamaella lignohabitans 30033621 AWJ20_1782 mRNA ATH1 NC_031672.1 5415897 5417294 D AWJ20_1782 <5415897..>5417294 Sugiyamaella lignohabitans 30033622 AWJ20_1783 mRNA DAP1 NC_031672.1 5417457 5417975 R AWJ20_1783 complement(<5417457..>5417975) Sugiyamaella lignohabitans 30033623 AWJ20_1784 mRNA NIP100 NC_031672.1 5418171 5421563 D AWJ20_1784 <5418171..>5421563 Sugiyamaella lignohabitans 30033624 AWJ20_1785 mRNA SPT14 NC_031672.1 5421611 5422213 R AWJ20_1785 complement(<5421611..>5422213) Sugiyamaella lignohabitans 30033625 AWJ20_1786 mRNA TRE1 NC_031672.1 5423686 5426439 D AWJ20_1786 <5423686..>5426439 Sugiyamaella lignohabitans 30033626 AWJ20_1787 mRNA RSC4 NC_031672.1 5426594 5428144 R AWJ20_1787 complement(<5426594..>5428144) Sugiyamaella lignohabitans 30033627 AWJ20_1789 mRNA AWJ20_1789 NC_031672.1 5430442 5431716 D AWJ20_1789 <5430442..>5431716 Sugiyamaella lignohabitans 30033629 AWJ20_1790 mRNA RAD30 NC_031672.1 5432196 5434256 D AWJ20_1790 <5432196..>5434256 Sugiyamaella lignohabitans 30033631 AWJ20_1791 mRNA AWJ20_1791 NC_031672.1 5434328 5435089 R AWJ20_1791 complement(<5434328..>5435089) Sugiyamaella lignohabitans 30033632 AWJ20_1792 mRNA AWJ20_1792 NC_031672.1 5435338 5438379 R AWJ20_1792 complement(<5435338..>5438379) Sugiyamaella lignohabitans 30033633 AWJ20_1793 mRNA AWJ20_1793 NC_031672.1 5440860 5441861 R AWJ20_1793 complement(<5440860..>5441861) Sugiyamaella lignohabitans 30033634 AWJ20_1794 mRNA AWJ20_1794 NC_031672.1 5442785 5443807 D AWJ20_1794 <5442785..>5443807 Sugiyamaella lignohabitans 30033635 AWJ20_1795 mRNA DTR1 NC_031672.1 5443914 5445482 R AWJ20_1795 complement(<5443914..>5445482) Sugiyamaella lignohabitans 30033636 AWJ20_1796 mRNA RPN12 NC_031672.1 5446313 5447125 D AWJ20_1796 <5446313..>5447125 Sugiyamaella lignohabitans 30033637 AWJ20_1797 mRNA MRPS35 NC_031672.1 5449184 5449780 D AWJ20_1797 <5449184..>5449780 Sugiyamaella lignohabitans 30033638 AWJ20_1798 mRNA MRPS35 NC_031672.1 5449926 5450369 D AWJ20_1798 <5449926..>5450369 Sugiyamaella lignohabitans 30033639 AWJ20_1799 mRNA AWJ20_1799 NC_031672.1 5450473 5451579 R AWJ20_1799 complement(<5450473..>5451579) Sugiyamaella lignohabitans 30033640 AWJ20_1800 mRNA CHC1 NC_031672.1 5452265 5457490 D AWJ20_1800 join(<5452265..5452377,5452816..>5457490) Sugiyamaella lignohabitans 30033643 AWJ20_1801 mRNA TMA20 NC_031672.1 5458096 5458332 D AWJ20_1801 <5458096..>5458332 Sugiyamaella lignohabitans 30033644 AWJ20_1802 mRNA PAC2 NC_031672.1 5458484 5460034 R AWJ20_1802 complement(<5458484..>5460034) Sugiyamaella lignohabitans 30033645 AWJ20_1803 mRNA MRPL17 NC_031672.1 5460360 5461289 D AWJ20_1803 <5460360..>5461289 Sugiyamaella lignohabitans 30033646 AWJ20_1804 mRNA AWJ20_1804 NC_031672.1 5461433 5462461 R AWJ20_1804 complement(<5461433..>5462461) Sugiyamaella lignohabitans 30033647 AWJ20_1805 mRNA NRD1 NC_031672.1 5462632 5464524 R AWJ20_1805 complement(<5462632..>5464524) Sugiyamaella lignohabitans 30033648 AWJ20_1806 mRNA AWJ20_1806 NC_031672.1 5466800 5468272 R AWJ20_1806 complement(<5466800..>5468272) Sugiyamaella lignohabitans 30033649 AWJ20_1807 mRNA AWJ20_1807 NC_031672.1 5469094 5469417 R AWJ20_1807 complement(<5469094..>5469417) Sugiyamaella lignohabitans 30033650 AWJ20_1809 mRNA GAS3 NC_031672.1 5471273 5472238 R AWJ20_1809 complement(<5471273..>5472238) Sugiyamaella lignohabitans 30033652 AWJ20_1810 mRNA AWJ20_1810 NC_031672.1 5474655 5475170 R AWJ20_1810 complement(<5474655..>5475170) Sugiyamaella lignohabitans 30033654 AWJ20_1811 mRNA SLN1 NC_031672.1 5476823 5480344 R AWJ20_1811 complement(<5476823..>5480344) Sugiyamaella lignohabitans 30033655 AWJ20_1812 mRNA QRI1 NC_031672.1 5483734 5485176 D AWJ20_1812 <5483734..>5485176 Sugiyamaella lignohabitans 30033656 AWJ20_1813 mRNA AWJ20_1813 NC_031672.1 5488517 5490622 R AWJ20_1813 complement(<5488517..>5490622) Sugiyamaella lignohabitans 30033657 AWJ20_1814 mRNA AWJ20_1814 NC_031672.1 5491531 5494095 R AWJ20_1814 complement(<5491531..>5494095) Sugiyamaella lignohabitans 30033658 AWJ20_1815 mRNA AWJ20_1815 NC_031672.1 5494325 5494687 R AWJ20_1815 complement(<5494325..>5494687) Sugiyamaella lignohabitans 30033659 AWJ20_1816 mRNA AWJ20_1816 NC_031672.1 5498221 5500611 D AWJ20_1816 <5498221..>5500611 Sugiyamaella lignohabitans 30033660 AWJ20_1817 mRNA AWJ20_1817 NC_031672.1 5501709 5502457 D AWJ20_1817 join(<5501709..5501747,5501816..>5502457) Sugiyamaella lignohabitans 30033661 AWJ20_1818 mRNA MRE11 NC_031672.1 5504112 5505935 R AWJ20_1818 complement(<5504112..>5505935) Sugiyamaella lignohabitans 30033662 AWJ20_1819 mRNA RPL23B NC_031672.1 5510274 5510669 D AWJ20_1819 <5510274..>5510669 Sugiyamaella lignohabitans 30033663 AWJ20_1821 mRNA AWJ20_1821 NC_031672.1 5511416 5511730 D AWJ20_1821 <5511416..>5511730 Sugiyamaella lignohabitans 30033666 AWJ20_1822 mRNA TEL1 NC_031672.1 5514898 5521554 D AWJ20_1822 <5514898..>5521554 Sugiyamaella lignohabitans 30033667 AWJ20_1823 mRNA AWJ20_1823 NC_031672.1 5521632 5521841 D AWJ20_1823 <5521632..>5521841 Sugiyamaella lignohabitans 30033668 AWJ20_1824 mRNA RSM25 NC_031672.1 5521990 5522778 R AWJ20_1824 complement(<5521990..>5522778) Sugiyamaella lignohabitans 30033669 AWJ20_1825 mRNA PDB1 NC_031672.1 5524609 5525562 D AWJ20_1825 <5524609..>5525562 Sugiyamaella lignohabitans 30033670 AWJ20_1826 mRNA AWJ20_1826 NC_031672.1 5525803 5527428 R AWJ20_1826 complement(<5525803..>5527428) Sugiyamaella lignohabitans 30033671 AWJ20_1827 mRNA PUT1 NC_031672.1 5528600 5530072 D AWJ20_1827 <5528600..>5530072 Sugiyamaella lignohabitans 30033672 AWJ20_1828 mRNA TCB3 NC_031672.1 5531587 5536441 D AWJ20_1828 join(<5531587..5532021,5532128..>5536441) Sugiyamaella lignohabitans 30033673 AWJ20_1829 mRNA SEC9 NC_031672.1 5536683 5538131 R AWJ20_1829 complement(<5536683..>5538131) Sugiyamaella lignohabitans 30033674 AWJ20_1830 mRNA DPH6 NC_031672.1 5538338 5540293 D AWJ20_1830 <5538338..>5540293 Sugiyamaella lignohabitans 30033676 AWJ20_1831 mRNA RIB4 NC_031672.1 5540961 5541173 D AWJ20_1831 <5540961..>5541173 Sugiyamaella lignohabitans 30033677 AWJ20_1832 mRNA NOP8 NC_031672.1 5541368 5542810 R AWJ20_1832 complement(<5541368..>5542810) Sugiyamaella lignohabitans 30033678 AWJ20_1833 mRNA CTR9 NC_031672.1 5543052 5546324 D AWJ20_1833 <5543052..>5546324 Sugiyamaella lignohabitans 30033679 AWJ20_1834 mRNA AWJ20_1834 NC_031672.1 5548090 5549154 D AWJ20_1834 <5548090..>5549154 Sugiyamaella lignohabitans 30033680 AWJ20_1835 mRNA AWJ20_1835 NC_031672.1 5549318 5549941 R AWJ20_1835 complement(<5549318..>5549941) Sugiyamaella lignohabitans 30033681 AWJ20_1836 mRNA WAR1 NC_031672.1 5550144 5552963 R AWJ20_1836 complement(<5550144..>5552963) Sugiyamaella lignohabitans 30033682 AWJ20_1837 mRNA HMG1 NC_031672.1 5553874 5556933 R AWJ20_1837 complement(<5553874..>5556933) Sugiyamaella lignohabitans 30033683 AWJ20_1838 mRNA TRM82 NC_031672.1 5558302 5559639 R AWJ20_1838 complement(<5558302..>5559639) Sugiyamaella lignohabitans 30033684 AWJ20_1839 mRNA PAC1 NC_031672.1 5563030 5563947 D AWJ20_1839 <5563030..>5563947 Sugiyamaella lignohabitans 30033685 AWJ20_1840 mRNA MAM3 NC_031672.1 5564150 5566471 R AWJ20_1840 complement(<5564150..>5566471) Sugiyamaella lignohabitans 30033687 AWJ20_1841 mRNA ADH4 NC_031672.1 5568216 5569471 R AWJ20_1841 complement(join(<5568216..5568220,5568328..>5569471)) Sugiyamaella lignohabitans 30033688 AWJ20_1842 mRNA AWJ20_1842 NC_031672.1 5569789 5571228 R AWJ20_1842 complement(<5569789..>5571228) Sugiyamaella lignohabitans 30033689 AWJ20_1843 mRNA YAP1 NC_031672.1 5572297 5573982 R AWJ20_1843 complement(<5572297..>5573982) Sugiyamaella lignohabitans 30033690 AWJ20_1844 mRNA GDB1 NC_031672.1 5578242 5582924 D AWJ20_1844 join(<5578242..5580642,5580700..>5582924) Sugiyamaella lignohabitans 30033691 AWJ20_1845 mRNA rlc1 NC_031672.1 5583353 5583709 D AWJ20_1845 <5583353..>5583709 Sugiyamaella lignohabitans 30033692 AWJ20_1846 mRNA RPO26 NC_031672.1 5583929 5584525 R AWJ20_1846 complement(join(<5583929..5584385,5584506..>5584525)) Sugiyamaella lignohabitans 30033693 AWJ20_1847 mRNA tam14 NC_031672.1 5585140 5586291 D AWJ20_1847 <5585140..>5586291 Sugiyamaella lignohabitans 30033694 AWJ20_1848 mRNA FRE3 NC_031672.1 5587023 5587985 R AWJ20_1848 complement(<5587023..>5587985) Sugiyamaella lignohabitans 30033695 AWJ20_1849 mRNA PPT1 NC_031672.1 5591312 5592784 D AWJ20_1849 <5591312..>5592784 Sugiyamaella lignohabitans 30033696 AWJ20_1850 mRNA NOP16 NC_031672.1 5592945 5593541 R AWJ20_1850 complement(<5592945..>5593541) Sugiyamaella lignohabitans 30033698 AWJ20_1851 mRNA PMI40 NC_031672.1 5593762 5595027 R AWJ20_1851 complement(<5593762..>5595027) Sugiyamaella lignohabitans 30033699 AWJ20_1852 mRNA AWJ20_1852 NC_031672.1 5595872 5596579 D AWJ20_1852 <5595872..>5596579 Sugiyamaella lignohabitans 30033700 AWJ20_1853 mRNA BZZ1 NC_031672.1 5598866 5600806 R AWJ20_1853 complement(<5598866..>5600806) Sugiyamaella lignohabitans 30033701 AWJ20_1854 mRNA NTF2 NC_031672.1 5601860 5602129 D AWJ20_1854 <5601860..>5602129 Sugiyamaella lignohabitans 30033702 AWJ20_1855 mRNA AWJ20_1855 NC_031672.1 5602327 5603841 R AWJ20_1855 complement(<5602327..>5603841) Sugiyamaella lignohabitans 30033703 AWJ20_1856 mRNA AWJ20_1856 NC_031672.1 5604561 5605358 D AWJ20_1856 <5604561..>5605358 Sugiyamaella lignohabitans 30033704 AWJ20_1857 mRNA tam14 NC_031672.1 5606314 5606961 R AWJ20_1857 complement(<5606314..>5606961) Sugiyamaella lignohabitans 30033705 AWJ20_1858 mRNA MSE1 NC_031672.1 5608366 5610060 D AWJ20_1858 <5608366..>5610060 Sugiyamaella lignohabitans 30033706 AWJ20_1859 mRNA SMC5 NC_031672.1 5610117 5613269 R AWJ20_1859 complement(<5610117..>5613269) Sugiyamaella lignohabitans 30033707 AWJ20_1860 mRNA AWJ20_1860 NC_031672.1 5614172 5615476 D AWJ20_1860 <5614172..>5615476 Sugiyamaella lignohabitans 30033709 AWJ20_1861 mRNA AWJ20_1861 NC_031672.1 5615706 5616470 R AWJ20_1861 complement(<5615706..>5616470) Sugiyamaella lignohabitans 30033710 AWJ20_1862 mRNA AWJ20_1862 NC_031672.1 5617787 5618860 D AWJ20_1862 <5617787..>5618860 Sugiyamaella lignohabitans 30033711 AWJ20_1863 mRNA CAB1 NC_031672.1 5619531 5620751 R AWJ20_1863 complement(<5619531..>5620751) Sugiyamaella lignohabitans 30033712 AWJ20_1864 mRNA APA1 NC_031672.1 5621918 5622901 D AWJ20_1864 <5621918..>5622901 Sugiyamaella lignohabitans 30033713 AWJ20_1865 mRNA MRM1 NC_031672.1 5623073 5624599 R AWJ20_1865 complement(<5623073..>5624599) Sugiyamaella lignohabitans 30033714 AWJ20_1866 mRNA QCR7 NC_031672.1 5625083 5625391 D AWJ20_1866 <5625083..>5625391 Sugiyamaella lignohabitans 30033715 AWJ20_1867 mRNA KIC1 NC_031672.1 5625888 5629076 R AWJ20_1867 complement(<5625888..>5629076) Sugiyamaella lignohabitans 30033716 AWJ20_1868 mRNA HIS3 NC_031672.1 5629637 5630290 R AWJ20_1868 complement(<5629637..>5630290) Sugiyamaella lignohabitans 30033717 AWJ20_1869 mRNA AWJ20_1869 NC_031672.1 5630559 5631962 R AWJ20_1869 complement(<5630559..>5631962) Sugiyamaella lignohabitans 30033718 AWJ20_1870 mRNA AWJ20_1870 NC_031672.1 5632478 5634466 R AWJ20_1870 complement(<5632478..>5634466) Sugiyamaella lignohabitans 30033720 AWJ20_1871 mRNA IFA38 NC_031672.1 5639366 5640442 R AWJ20_1871 complement(<5639366..>5640442) Sugiyamaella lignohabitans 30033721 AWJ20_1872 mRNA NAP1 NC_031672.1 5642187 5643536 D AWJ20_1872 <5642187..>5643536 Sugiyamaella lignohabitans 30033722 AWJ20_1873 mRNA AWJ20_1873 NC_031672.1 5645601 5647403 D AWJ20_1873 <5645601..>5647403 Sugiyamaella lignohabitans 30033723 AWJ20_1874 mRNA HUL5 NC_031672.1 5647717 5650833 D AWJ20_1874 <5647717..>5650833 Sugiyamaella lignohabitans 30033724 AWJ20_1876 mRNA AWJ20_1876 NC_031672.1 5661317 5662411 R AWJ20_1876 complement(<5661317..>5662411) Sugiyamaella lignohabitans 30033726 AWJ20_1877 mRNA AWJ20_1877 NC_031672.1 5664769 5665902 D AWJ20_1877 <5664769..>5665902 Sugiyamaella lignohabitans 30033727 AWJ20_1878 mRNA AWJ20_1878 NC_031672.1 5666418 5666963 R AWJ20_1878 complement(<5666418..>5666963) Sugiyamaella lignohabitans 30033728 AWJ20_1879 mRNA DSF2 NC_031672.1 5669896 5671587 D AWJ20_1879 <5669896..>5671587 Sugiyamaella lignohabitans 30033729 AWJ20_1880 mRNA AWJ20_1880 NC_031672.1 5677865 5679520 D AWJ20_1880 <5677865..>5679520 Sugiyamaella lignohabitans 30033731 AWJ20_1881 mRNA MLH1 NC_031672.1 5679572 5681872 R AWJ20_1881 complement(<5679572..>5681872) Sugiyamaella lignohabitans 30033732 AWJ20_1882 mRNA NSE4 NC_031672.1 5682218 5683222 D AWJ20_1882 <5682218..>5683222 Sugiyamaella lignohabitans 30033733 AWJ20_1883 mRNA QRI7 NC_031672.1 5683670 5684941 R AWJ20_1883 complement(<5683670..>5684941) Sugiyamaella lignohabitans 30033734 AWJ20_1884 mRNA ALD2 NC_031672.1 5685937 5687436 D AWJ20_1884 <5685937..>5687436 Sugiyamaella lignohabitans 30033735 AWJ20_1885 mRNA ISA1 NC_031672.1 5688497 5689315 D AWJ20_1885 <5688497..>5689315 Sugiyamaella lignohabitans 30033736 AWJ20_1886 mRNA CDC4 NC_031672.1 5689476 5692619 R AWJ20_1886 complement(<5689476..>5692619) Sugiyamaella lignohabitans 30033737 AWJ20_1887 mRNA AWJ20_1887 NC_031672.1 5695329 5696006 R AWJ20_1887 complement(<5695329..>5696006) Sugiyamaella lignohabitans 30033738 AWJ20_1888 mRNA ULP1 NC_031672.1 5698612 5701362 D AWJ20_1888 <5698612..>5701362 Sugiyamaella lignohabitans 30033739 AWJ20_1889 mRNA YME2 NC_031672.1 5701473 5704406 R AWJ20_1889 complement(<5701473..>5704406) Sugiyamaella lignohabitans 30033740 AWJ20_1890 mRNA NAR1 NC_031672.1 5705283 5706854 D AWJ20_1890 <5705283..>5706854 Sugiyamaella lignohabitans 30033742 AWJ20_1891 mRNA ZWF1 NC_031672.1 5710151 5711500 D AWJ20_1891 <5710151..>5711500 Sugiyamaella lignohabitans 30033743 AWJ20_1892 mRNA GNA1 NC_031672.1 5711960 5712532 R AWJ20_1892 complement(<5711960..>5712532) Sugiyamaella lignohabitans 30033744 AWJ20_1893 mRNA AWJ20_1893 NC_031672.1 5714639 5715682 R AWJ20_1893 complement(<5714639..>5715682) Sugiyamaella lignohabitans 30033745 AWJ20_1894 mRNA MNL2 NC_031672.1 5717123 5719945 D AWJ20_1894 <5717123..>5719945 Sugiyamaella lignohabitans 30033746 AWJ20_1895 mRNA GDH1 NC_031672.1 5720504 5721865 R AWJ20_1895 complement(<5720504..>5721865) Sugiyamaella lignohabitans 30033747 AWJ20_1896 mRNA YTP1 NC_031672.1 5724620 5726005 R AWJ20_1896 complement(<5724620..>5726005) Sugiyamaella lignohabitans 30033748 AWJ20_1897 mRNA YDJ1 NC_031672.1 5728011 5729303 R AWJ20_1897 complement(<5728011..>5729303) Sugiyamaella lignohabitans 30033749 AWJ20_1898 mRNA MDM10 NC_031672.1 5729874 5731019 D AWJ20_1898 <5729874..>5731019 Sugiyamaella lignohabitans 30033750 AWJ20_1899 mRNA AWJ20_1899 NC_031672.1 5731508 5733211 D AWJ20_1899 <5731508..>5733211 Sugiyamaella lignohabitans 30033751 AWJ20_1900 mRNA FMO1 NC_031672.1 5733624 5735102 D AWJ20_1900 <5733624..>5735102 Sugiyamaella lignohabitans 30033754 AWJ20_1901 mRNA TOM22 NC_031672.1 5735417 5735863 D AWJ20_1901 <5735417..>5735863 Sugiyamaella lignohabitans 30033755 AWJ20_1902 mRNA YPS3 NC_031672.1 5736134 5737369 R AWJ20_1902 complement(<5736134..>5737369) Sugiyamaella lignohabitans 30033756 AWJ20_1903 mRNA OPT2 NC_031672.1 5738088 5740100 D AWJ20_1903 <5738088..>5740100 Sugiyamaella lignohabitans 30033757 AWJ20_1904 mRNA FTH1 NC_031672.1 5741989 5743224 D AWJ20_1904 <5741989..>5743224 Sugiyamaella lignohabitans 30033758 AWJ20_1905 mRNA NPC2 NC_031672.1 5743494 5744039 R AWJ20_1905 complement(<5743494..>5744039) Sugiyamaella lignohabitans 30033759 AWJ20_1907 mRNA AWJ20_1907 NC_031672.1 5751765 5755508 D AWJ20_1907 <5751765..>5755508 Sugiyamaella lignohabitans 30033760 AWJ20_1908 mRNA AWJ20_1908 NC_031672.1 5760721 5762037 D AWJ20_1908 <5760721..>5762037 Sugiyamaella lignohabitans 30033761 AWJ20_1910 mRNA UGA4 NC_031672.1 5762761 5764110 R AWJ20_1910 complement(<5762761..>5764110) Sugiyamaella lignohabitans 30033764 AWJ20_1911 mRNA AWJ20_1911 NC_031672.1 5766410 5767768 R AWJ20_1911 complement(<5766410..>5767768) Sugiyamaella lignohabitans 30033765 AWJ20_1912 mRNA AWJ20_1912 NC_031672.1 5770658 5772316 D AWJ20_1912 <5770658..>5772316 Sugiyamaella lignohabitans 30033766 AWJ20_1913 mRNA MCM1 NC_031672.1 5773663 5774448 R AWJ20_1913 complement(<5773663..>5774448) Sugiyamaella lignohabitans 30033767 AWJ20_1914 mRNA ANB1 NC_031672.1 5782429 5782842 R AWJ20_1914 complement(<5782429..>5782842) Sugiyamaella lignohabitans 30033768 AWJ20_1915 mRNA URE2 NC_031672.1 5793395 5794366 D AWJ20_1915 <5793395..>5794366 Sugiyamaella lignohabitans 30033769 AWJ20_1916 mRNA ALD5 NC_031672.1 5797688 5799178 D AWJ20_1916 <5797688..>5799178 Sugiyamaella lignohabitans 30033770 AWJ20_1917 mRNA AWJ20_1917 NC_031672.1 5799398 5800348 R AWJ20_1917 complement(<5799398..>5800348) Sugiyamaella lignohabitans 30033771 AWJ20_1918 mRNA GCS1 NC_031672.1 5801249 5802325 R AWJ20_1918 complement(<5801249..>5802325) Sugiyamaella lignohabitans 30033772 AWJ20_1919 mRNA PSY2 NC_031672.1 5802876 5804885 R AWJ20_1919 complement(<5802876..>5804885) Sugiyamaella lignohabitans 30033773 AWJ20_1920 mRNA PSY2 NC_031672.1 5805250 5806062 R AWJ20_1920 complement(<5805250..>5806062) Sugiyamaella lignohabitans 30033775 AWJ20_1921 mRNA SWC3 NC_031672.1 5809247 5812057 R AWJ20_1921 complement(<5809247..>5812057) Sugiyamaella lignohabitans 30033776 AWJ20_1922 mRNA PRD1 NC_031672.1 5812413 5814719 R AWJ20_1922 complement(<5812413..>5814719) Sugiyamaella lignohabitans 30033777 AWJ20_1923 mRNA KGD2 NC_031672.1 5815395 5816897 D AWJ20_1923 <5815395..>5816897 Sugiyamaella lignohabitans 30033778 AWJ20_1924 mRNA AWJ20_1924 NC_031672.1 5819370 5820581 D AWJ20_1924 <5819370..>5820581 Sugiyamaella lignohabitans 30033779 AWJ20_1925 mRNA ENO1 NC_031672.1 5819604 5821904 R AWJ20_1925 complement(join(<5819604..5820880,5821859..>5821904)) Sugiyamaella lignohabitans 30033780 AWJ20_1926 mRNA AWJ20_1926 NC_031672.1 5824427 5826055 R AWJ20_1926 complement(<5824427..>5826055) Sugiyamaella lignohabitans 30033781 AWJ20_1927 mRNA AWJ20_1927 NC_031672.1 5829019 5829753 D AWJ20_1927 <5829019..>5829753 Sugiyamaella lignohabitans 30033782 AWJ20_1928 mRNA RPO41 NC_031672.1 5829825 5833259 D AWJ20_1928 <5829825..>5833259 Sugiyamaella lignohabitans 30033783 AWJ20_1929 mRNA SOK1 NC_031672.1 5837003 5839306 R AWJ20_1929 complement(<5837003..>5839306) Sugiyamaella lignohabitans 30033784 AWJ20_1930 mRNA AUR1 NC_031672.1 5850781 5852403 D AWJ20_1930 <5850781..>5852403 Sugiyamaella lignohabitans 30033786 AWJ20_1931 mRNA YIA6 NC_031672.1 5854683 5855759 D AWJ20_1931 <5854683..>5855759 Sugiyamaella lignohabitans 30033787 AWJ20_1932 mRNA AWJ20_1932 NC_031672.1 5855955 5859293 R AWJ20_1932 complement(<5855955..>5859293) Sugiyamaella lignohabitans 30033788 AWJ20_1933 mRNA PUT3 NC_031672.1 5860199 5862886 D AWJ20_1933 <5860199..>5862886 Sugiyamaella lignohabitans 30033789 AWJ20_1934 mRNA AWJ20_1934 NC_031672.1 5863207 5864475 R AWJ20_1934 complement(<5863207..>5864475) Sugiyamaella lignohabitans 30033790 AWJ20_1935 mRNA YAP1801 NC_031672.1 5868142 5870028 R AWJ20_1935 complement(<5868142..>5870028) Sugiyamaella lignohabitans 30033791 AWJ20_1936 mRNA AWJ20_1936 NC_031672.1 5871670 5873367 D AWJ20_1936 <5871670..>5873367 Sugiyamaella lignohabitans 30033792 AWJ20_1937 mRNA PUT2 NC_031672.1 5873763 5875484 D AWJ20_1937 <5873763..>5875484 Sugiyamaella lignohabitans 30033793 AWJ20_1938 mRNA AWJ20_1938 NC_031672.1 5876488 5877531 D AWJ20_1938 <5876488..>5877531 Sugiyamaella lignohabitans 30033794 AWJ20_1939 mRNA CGT1 NC_031672.1 5877677 5879152 R AWJ20_1939 complement(<5877677..>5879152) Sugiyamaella lignohabitans 30033795 AWJ20_1940 mRNA RLP24 NC_031672.1 5880998 5881534 D AWJ20_1940 <5880998..>5881534 Sugiyamaella lignohabitans 30033797 AWJ20_1941 mRNA RBG2 NC_031672.1 5883868 5884974 R AWJ20_1941 complement(<5883868..>5884974) Sugiyamaella lignohabitans 30033798 AWJ20_1942 mRNA CRC1 NC_031672.1 5886791 5887702 D AWJ20_1942 <5886791..>5887702 Sugiyamaella lignohabitans 30033799 AWJ20_1943 mRNA SPC98 NC_031672.1 5887886 5890372 R AWJ20_1943 complement(<5887886..>5890372) Sugiyamaella lignohabitans 30033800 AWJ20_1944 mRNA YIP3 NC_031672.1 5891591 5891821 D AWJ20_1944 <5891591..>5891821 Sugiyamaella lignohabitans 30033801 AWJ20_1945 mRNA YAR1 NC_031672.1 5894409 5896106 R AWJ20_1945 complement(<5894409..>5896106) Sugiyamaella lignohabitans 30033802 AWJ20_1946 mRNA AWJ20_1946 NC_031672.1 5896135 5899632 R AWJ20_1946 complement(<5896135..>5899632) Sugiyamaella lignohabitans 30033803 AWJ20_1947 mRNA cbh2 NC_031672.1 5903038 5905944 D AWJ20_1947 <5903038..>5905944 Sugiyamaella lignohabitans 30033804 AWJ20_1948 mRNA ILV1 NC_031672.1 5906486 5908069 D AWJ20_1948 <5906486..>5908069 Sugiyamaella lignohabitans 30033805 AWJ20_1949 mRNA BNA3 NC_031672.1 5908486 5909649 D AWJ20_1949 <5908486..>5909649 Sugiyamaella lignohabitans 30033806 AWJ20_1950 mRNA FMP25 NC_031672.1 5909809 5911410 R AWJ20_1950 complement(<5909809..>5911410) Sugiyamaella lignohabitans 30033808 AWJ20_1951 mRNA FMP32 NC_031672.1 5911744 5912388 D AWJ20_1951 <5911744..>5912388 Sugiyamaella lignohabitans 30033809 AWJ20_1952 mRNA SEC53 NC_031672.1 5912567 5913337 R AWJ20_1952 complement(<5912567..>5913337) Sugiyamaella lignohabitans 30033810 AWJ20_1953 mRNA AWJ20_1953 NC_031672.1 5915103 5915543 D AWJ20_1953 <5915103..>5915543 Sugiyamaella lignohabitans 30033811 AWJ20_1954 mRNA RPS14A NC_031672.1 5915121 5915399 R AWJ20_1954 complement(<5915121..>5915399) Sugiyamaella lignohabitans 30033812 AWJ20_1955 mRNA AWJ20_1955 NC_031672.1 5916765 5917469 D AWJ20_1955 <5916765..>5917469 Sugiyamaella lignohabitans 30033813 AWJ20_1956 mRNA AWJ20_1956 NC_031672.1 5917643 5918146 D AWJ20_1956 <5917643..>5918146 Sugiyamaella lignohabitans 30033814 AWJ20_1957 mRNA LEU2 NC_031672.1 5918220 5919467 R AWJ20_1957 complement(<5918220..>5919467) Sugiyamaella lignohabitans 30033815 AWJ20_1958 mRNA SPS19 NC_031672.1 5919652 5920410 D AWJ20_1958 <5919652..>5920410 Sugiyamaella lignohabitans 30033816 AWJ20_1959 mRNA AWJ20_1959 NC_031672.1 5921462 5922946 D AWJ20_1959 <5921462..>5922946 Sugiyamaella lignohabitans 30033817 AWJ20_1960 mRNA ICP55 NC_031672.1 5923161 5924558 R AWJ20_1960 complement(<5923161..>5924558) Sugiyamaella lignohabitans 30033819 AWJ20_1961 mRNA FCY2 NC_031672.1 5926676 5928196 D AWJ20_1961 <5926676..>5928196 Sugiyamaella lignohabitans 30033820 AWJ20_1962 mRNA SDO1 NC_031674.1 2139 2819 D AWJ20_1962 <2139..>2819 Sugiyamaella lignohabitans 30033821 AWJ20_1963 mRNA AWJ20_1963 NC_031674.1 2859 3389 R AWJ20_1963 complement(<2859..>3389) Sugiyamaella lignohabitans 30033822 AWJ20_1964 mRNA AWJ20_1964 NC_031674.1 4700 5089 R AWJ20_1964 complement(<4700..>5089) Sugiyamaella lignohabitans 30033823 AWJ20_1965 mRNA MSS4 NC_031674.1 5690 9004 R AWJ20_1965 complement(<5690..>9004) Sugiyamaella lignohabitans 30033824 AWJ20_1966 mRNA AWJ20_1966 NC_031674.1 11084 13663 R AWJ20_1966 complement(<11084..>13663) Sugiyamaella lignohabitans 30033825 AWJ20_1967 mRNA AWJ20_1967 NC_031674.1 15080 16726 D AWJ20_1967 <15080..>16726 Sugiyamaella lignohabitans 30033826 AWJ20_1968 mRNA NAM8 NC_031674.1 19208 20860 D AWJ20_1968 <19208..>20860 Sugiyamaella lignohabitans 30033827 AWJ20_1969 mRNA SWR1 NC_031674.1 23364 27506 D AWJ20_1969 <23364..>27506 Sugiyamaella lignohabitans 30033828 AWJ20_1970 mRNA PDE2 NC_031674.1 31192 33165 D AWJ20_1970 <31192..>33165 Sugiyamaella lignohabitans 30033830 AWJ20_1971 mRNA VTS1 NC_031674.1 33355 35247 R AWJ20_1971 complement(<33355..>35247) Sugiyamaella lignohabitans 30033831 AWJ20_1972 mRNA RTT106 NC_031674.1 37188 37670 R AWJ20_1972 complement(<37188..>37670) Sugiyamaella lignohabitans 30033832 AWJ20_1973 mRNA GLC7 NC_031674.1 41941 42411 R AWJ20_1973 complement(<41941..>42411) Sugiyamaella lignohabitans 30033833 AWJ20_1974 mRNA GLC7 NC_031674.1 44647 45621 R AWJ20_1974 complement(<44647..>45621) Sugiyamaella lignohabitans 30033834 AWJ20_1975 mRNA VHR1 NC_031674.1 46504 48150 R AWJ20_1975 complement(<46504..>48150) Sugiyamaella lignohabitans 30033835 AWJ20_1976 mRNA ENV9 NC_031674.1 49106 50077 D AWJ20_1976 <49106..>50077 Sugiyamaella lignohabitans 30033836 AWJ20_1977 mRNA DSF2 NC_031674.1 51489 53402 D AWJ20_1977 <51489..>53402 Sugiyamaella lignohabitans 30033837 AWJ20_1978 mRNA MZM1 NC_031674.1 53723 53989 R AWJ20_1978 complement(<53723..>53989) Sugiyamaella lignohabitans 30033838 AWJ20_1979 mRNA AWJ20_1979 NC_031674.1 54568 56172 D AWJ20_1979 <54568..>56172 Sugiyamaella lignohabitans 30033839 AWJ20_1980 mRNA MEF2 NC_031674.1 57205 59694 R AWJ20_1980 complement(<57205..>59694) Sugiyamaella lignohabitans 30033841 AWJ20_1981 mRNA AWJ20_1981 NC_031674.1 60189 61094 D AWJ20_1981 <60189..>61094 Sugiyamaella lignohabitans 30033842 AWJ20_1982 mRNA AWJ20_1982 NC_031674.1 63464 65449 D AWJ20_1982 <63464..>65449 Sugiyamaella lignohabitans 30033843 AWJ20_1983 mRNA ARP6 NC_031674.1 65534 66802 R AWJ20_1983 complement(<65534..>66802) Sugiyamaella lignohabitans 30033844 AWJ20_1984 mRNA AWJ20_1984 NC_031674.1 67251 68048 D AWJ20_1984 <67251..>68048 Sugiyamaella lignohabitans 30033845 AWJ20_1985 mRNA SMC4 NC_031674.1 68086 71694 D AWJ20_1985 <68086..>71694 Sugiyamaella lignohabitans 30033846 AWJ20_1986 mRNA COQ5 NC_031674.1 71831 72745 R AWJ20_1986 complement(<71831..>72745) Sugiyamaella lignohabitans 30033847 AWJ20_1987 mRNA AWJ20_1987 NC_031674.1 73476 73982 D AWJ20_1987 <73476..>73982 Sugiyamaella lignohabitans 30033848 AWJ20_1988 mRNA AWJ20_1988 NC_031674.1 74203 75435 D AWJ20_1988 <74203..>75435 Sugiyamaella lignohabitans 30033849 AWJ20_1989 mRNA AWJ20_1989 NC_031674.1 75545 77095 R AWJ20_1989 complement(<75545..>77095) Sugiyamaella lignohabitans 30033850 AWJ20_1990 mRNA PRE9 NC_031674.1 77713 78273 D AWJ20_1990 <77713..>78273 Sugiyamaella lignohabitans 30033852 AWJ20_1991 mRNA AWJ20_1991 NC_031674.1 78447 79427 R AWJ20_1991 complement(<78447..>79427) Sugiyamaella lignohabitans 30033853 AWJ20_1992 mRNA TAO3 NC_031674.1 80095 87144 R AWJ20_1992 complement(<80095..>87144) Sugiyamaella lignohabitans 30033854 AWJ20_1993 mRNA NOP1 NC_031674.1 90163 91146 R AWJ20_1993 complement(<90163..>91146) Sugiyamaella lignohabitans 30033855 AWJ20_1994 mRNA RPL17A NC_031674.1 92150 92707 D AWJ20_1994 <92150..>92707 Sugiyamaella lignohabitans 30033856 AWJ20_1995 mRNA COY1 NC_031674.1 93098 95224 R AWJ20_1995 complement(<93098..>95224) Sugiyamaella lignohabitans 30033857 AWJ20_1996 mRNA FUN26 NC_031674.1 96127 97461 D AWJ20_1996 <96127..>97461 Sugiyamaella lignohabitans 30033858 AWJ20_1997 mRNA AWJ20_1997 NC_031674.1 97544 97846 R AWJ20_1997 complement(<97544..>97846) Sugiyamaella lignohabitans 30033859 AWJ20_1998 mRNA RPD3 NC_031674.1 98510 99682 D AWJ20_1998 <98510..>99682 Sugiyamaella lignohabitans 30033860 AWJ20_1999 mRNA BFR1 NC_031674.1 100425 101837 D AWJ20_1999 <100425..>101837 Sugiyamaella lignohabitans 30033861 AWJ20_2000 mRNA FEN2 NC_031674.1 101977 103020 R AWJ20_2000 complement(<101977..>103020) Sugiyamaella lignohabitans 30033865 AWJ20_2001 mRNA AWJ20_2001 NC_031674.1 104711 107242 D AWJ20_2001 <104711..>107242 Sugiyamaella lignohabitans 30033866 AWJ20_2002 mRNA PET309 NC_031674.1 109047 112073 D AWJ20_2002 <109047..>112073 Sugiyamaella lignohabitans 30033867 AWJ20_2003 mRNA SPC3 NC_031674.1 112221 112631 R AWJ20_2003 complement(<112221..>112631) Sugiyamaella lignohabitans 30033868 AWJ20_2004 mRNA UGA2 NC_031674.1 115250 116755 D AWJ20_2004 <115250..>116755 Sugiyamaella lignohabitans 30033869 AWJ20_2005 mRNA AWJ20_2005 NC_031674.1 115696 116136 R AWJ20_2005 complement(<115696..>116136) Sugiyamaella lignohabitans 30033870 AWJ20_2006 mRNA AWJ20_2006 NC_031674.1 116820 118130 R AWJ20_2006 complement(<116820..>118130) Sugiyamaella lignohabitans 30033871 AWJ20_2007 mRNA RAD57 NC_031674.1 118446 119633 D AWJ20_2007 <118446..>119633 Sugiyamaella lignohabitans 30033872 AWJ20_2008 mRNA MCM2 NC_031674.1 119897 122404 D AWJ20_2008 <119897..>122404 Sugiyamaella lignohabitans 30033873 AWJ20_2009 mRNA MAF1 NC_031674.1 122694 123470 R AWJ20_2009 complement(<122694..>123470) Sugiyamaella lignohabitans 30033874 AWJ20_2010 mRNA PPH3 NC_031674.1 124618 125844 R AWJ20_2010 complement(<124618..>125844) Sugiyamaella lignohabitans 30033876 AWJ20_2011 mRNA RSN1 NC_031674.1 129665 132304 D AWJ20_2011 <129665..>132304 Sugiyamaella lignohabitans 30033877 AWJ20_2012 mRNA IPP1 NC_031674.1 132768 133616 D AWJ20_2012 <132768..>133616 Sugiyamaella lignohabitans 30033878 AWJ20_2013 mRNA TRP1 NC_031674.1 134501 136195 R AWJ20_2013 complement(<134501..>136195) Sugiyamaella lignohabitans 30033879 AWJ20_2014 mRNA SUA5 NC_031674.1 137434 138573 D AWJ20_2014 <137434..>138573 Sugiyamaella lignohabitans 30033880 AWJ20_2015 mRNA PMR1 NC_031674.1 138695 141475 R AWJ20_2015 complement(<138695..>141475) Sugiyamaella lignohabitans 30033881 AWJ20_2016 mRNA AWJ20_2016 NC_031674.1 140253 140750 D AWJ20_2016 <140253..>140750 Sugiyamaella lignohabitans 30033882 AWJ20_2017 mRNA MET10 NC_031674.1 142679 145846 R AWJ20_2017 complement(<142679..>145846) Sugiyamaella lignohabitans 30033883 AWJ20_2018 mRNA VID28 NC_031674.1 148020 150236 D AWJ20_2018 <148020..>150236 Sugiyamaella lignohabitans 30033884 AWJ20_2019 mRNA AWJ20_2019 NC_031674.1 150344 153412 R AWJ20_2019 complement(<150344..>153412) Sugiyamaella lignohabitans 30033885 AWJ20_2020 mRNA TRS20 NC_031674.1 154317 154637 D AWJ20_2020 <154317..>154637 Sugiyamaella lignohabitans 30033887 AWJ20_2021 mRNA AWJ20_2021 NC_031674.1 155042 156616 R AWJ20_2021 complement(<155042..>156616) Sugiyamaella lignohabitans 30033888 AWJ20_2022 mRNA AWJ20_2022 NC_031674.1 158301 159746 D AWJ20_2022 <158301..>159746 Sugiyamaella lignohabitans 30033889 AWJ20_2023 mRNA SSM4 NC_031674.1 162624 165347 R AWJ20_2023 complement(<162624..>165347) Sugiyamaella lignohabitans 30033890 AWJ20_2024 mRNA SSM4 NC_031674.1 165903 166142 R AWJ20_2024 complement(<165903..>166142) Sugiyamaella lignohabitans 30033891 AWJ20_2025 mRNA TRM2 NC_031674.1 167427 169031 D AWJ20_2025 <167427..>169031 Sugiyamaella lignohabitans 30033892 AWJ20_2027 mRNA AWJ20_2027 NC_031674.1 175785 177227 R AWJ20_2027 complement(<175785..>177227) Sugiyamaella lignohabitans 30033893 AWJ20_2029 mRNA AWJ20_2029 NC_031674.1 178914 179924 R AWJ20_2029 complement(<178914..>179924) Sugiyamaella lignohabitans 30033895 AWJ20_2030 mRNA AWJ20_2030 NC_031674.1 180932 183247 D AWJ20_2030 <180932..>183247 Sugiyamaella lignohabitans 30033897 AWJ20_2031 mRNA SUL1 NC_031674.1 186176 188560 D AWJ20_2031 <186176..>188560 Sugiyamaella lignohabitans 30033898 AWJ20_2032 mRNA YJU2 NC_031674.1 188760 189698 R AWJ20_2032 complement(<188760..>189698) Sugiyamaella lignohabitans 30033899 AWJ20_2033 mRNA TRK2 NC_031674.1 190962 193301 D AWJ20_2033 <190962..>193301 Sugiyamaella lignohabitans 30033900 AWJ20_2034 mRNA TPO1 NC_031674.1 194218 195855 D AWJ20_2034 <194218..>195855 Sugiyamaella lignohabitans 30033901 AWJ20_2035 mRNA PBS2 NC_031674.1 197062 199857 D AWJ20_2035 <197062..>199857 Sugiyamaella lignohabitans 30033902 AWJ20_2036 mRNA ANR2 NC_031674.1 200119 201759 D AWJ20_2036 <200119..>201759 Sugiyamaella lignohabitans 30033903 AWJ20_2037 mRNA LHS1 NC_031674.1 201957 204599 R AWJ20_2037 complement(<201957..>204599) Sugiyamaella lignohabitans 30033904 AWJ20_2038 mRNA URA2 NC_031674.1 206591 213319 D AWJ20_2038 <206591..>213319 Sugiyamaella lignohabitans 30033905 AWJ20_2039 mRNA AWJ20_2039 NC_031674.1 214221 215399 D AWJ20_2039 <214221..>215399 Sugiyamaella lignohabitans 30033906 AWJ20_2040 mRNA SEC27 NC_031674.1 218687 221182 D AWJ20_2040 <218687..>221182 Sugiyamaella lignohabitans 30033908 AWJ20_2041 mRNA AWJ20_2041 NC_031674.1 221497 222978 D AWJ20_2041 <221497..>222978 Sugiyamaella lignohabitans 30033909 AWJ20_2042 mRNA AWJ20_2042 NC_031674.1 223075 223743 R AWJ20_2042 complement(<223075..>223743) Sugiyamaella lignohabitans 30033910 AWJ20_2043 mRNA AWJ20_2043 NC_031674.1 225405 226148 R AWJ20_2043 complement(<225405..>226148) Sugiyamaella lignohabitans 30033911 AWJ20_2044 mRNA HNM1 NC_031674.1 227499 229136 R AWJ20_2044 complement(<227499..>229136) Sugiyamaella lignohabitans 30033912 AWJ20_2045 mRNA AWJ20_2045 NC_031674.1 230964 231419 D AWJ20_2045 <230964..>231419 Sugiyamaella lignohabitans 30033913 AWJ20_2046 mRNA RTR1 NC_031674.1 234659 235537 D AWJ20_2046 <234659..>235537 Sugiyamaella lignohabitans 30033914 AWJ20_2047 mRNA HXT13 NC_031674.1 236924 238288 D AWJ20_2047 <236924..>238288 Sugiyamaella lignohabitans 30033915 AWJ20_2048 mRNA SIP5 NC_031674.1 242372 244669 D AWJ20_2048 join(<242372..242725,242918..>244669) Sugiyamaella lignohabitans 30033916 AWJ20_2049 mRNA HAC1 NC_031674.1 250855 252030 D AWJ20_2049 <250855..>252030 Sugiyamaella lignohabitans 30033917 AWJ20_2050 mRNA AWJ20_2050 NC_031674.1 254820 256241 D AWJ20_2050 <254820..>256241 Sugiyamaella lignohabitans 30033919 AWJ20_2051 mRNA GLE2 NC_031674.1 256745 257827 D AWJ20_2051 <256745..>257827 Sugiyamaella lignohabitans 30033920 AWJ20_2052 mRNA IGO2 NC_031674.1 258533 258823 R AWJ20_2052 complement(<258533..>258823) Sugiyamaella lignohabitans 30033921 AWJ20_2053 mRNA MRPS16 NC_031674.1 264441 264833 R AWJ20_2053 complement(<264441..>264833) Sugiyamaella lignohabitans 30033922 AWJ20_2055 mRNA DNM1 NC_031674.1 266084 268516 D AWJ20_2055 <266084..>268516 Sugiyamaella lignohabitans 30033924 AWJ20_2056 mRNA AIM17 NC_031674.1 268605 269843 R AWJ20_2056 complement(<268605..>269843) Sugiyamaella lignohabitans 30033925 AWJ20_2057 mRNA RTT109 NC_031674.1 271524 272657 R AWJ20_2057 complement(<271524..>272657) Sugiyamaella lignohabitans 30033926 AWJ20_2058 mRNA PRE3 NC_031674.1 273377 273655 R AWJ20_2058 complement(<273377..>273655) Sugiyamaella lignohabitans 30033927 AWJ20_2059 mRNA moe1 NC_031674.1 274720 276381 D AWJ20_2059 <274720..>276381 Sugiyamaella lignohabitans 30033928 AWJ20_2060 mRNA AWJ20_2060 NC_031674.1 276531 279335 R AWJ20_2060 complement(<276531..>279335) Sugiyamaella lignohabitans 30033930 AWJ20_2061 mRNA OST1 NC_031674.1 280181 281587 D AWJ20_2061 <280181..>281587 Sugiyamaella lignohabitans 30033931 AWJ20_2062 mRNA AWJ20_2062 NC_031674.1 281858 283507 R AWJ20_2062 complement(<281858..>283507) Sugiyamaella lignohabitans 30033932 AWJ20_2064 mRNA FRE2 NC_031674.1 285954 286562 R AWJ20_2064 complement(<285954..>286562) Sugiyamaella lignohabitans 30033934 AWJ20_2065 mRNA AWJ20_2065 NC_031674.1 288477 289481 R AWJ20_2065 complement(<288477..>289481) Sugiyamaella lignohabitans 30033935 AWJ20_2066 mRNA AWJ20_2066 NC_031674.1 292168 293631 D AWJ20_2066 <292168..>293631 Sugiyamaella lignohabitans 30033936 AWJ20_2067 mRNA TRX1 NC_031674.1 294890 295204 R AWJ20_2067 complement(<294890..>295204) Sugiyamaella lignohabitans 30033937 AWJ20_2068 mRNA AWJ20_2068 NC_031674.1 294927 295127 D AWJ20_2068 <294927..>295127 Sugiyamaella lignohabitans 30033938 AWJ20_2069 mRNA AWJ20_2069 NC_031674.1 296328 296669 D AWJ20_2069 <296328..>296669 Sugiyamaella lignohabitans 30033939 AWJ20_2070 mRNA AWJ20_2070 NC_031674.1 301055 302038 R AWJ20_2070 complement(<301055..>302038) Sugiyamaella lignohabitans 30033941 AWJ20_2071 mRNA TRP5 NC_031674.1 303610 305703 D AWJ20_2071 <303610..>305703 Sugiyamaella lignohabitans 30033942 AWJ20_2072 mRNA AWJ20_2072 NC_031674.1 305901 308699 D AWJ20_2072 <305901..>308699 Sugiyamaella lignohabitans 30033943 AWJ20_2073 mRNA CWH41 NC_031674.1 309160 311664 D AWJ20_2073 <309160..>311664 Sugiyamaella lignohabitans 30033944 AWJ20_2074 mRNA RTC2 NC_031674.1 311800 312810 R AWJ20_2074 complement(<311800..>312810) Sugiyamaella lignohabitans 30033945 AWJ20_2075 mRNA RPL8B NC_031674.1 314581 315369 D AWJ20_2075 <314581..>315369 Sugiyamaella lignohabitans 30033946 AWJ20_2076 mRNA AWJ20_2076 NC_031674.1 315607 317217 D AWJ20_2076 <315607..>317217 Sugiyamaella lignohabitans 30033947 AWJ20_2078 mRNA RPL2A NC_031674.1 318406 319170 D AWJ20_2078 <318406..>319170 Sugiyamaella lignohabitans 30033949 AWJ20_2079 mRNA SMC2 NC_031674.1 319897 323022 D AWJ20_2079 <319897..>323022 Sugiyamaella lignohabitans 30033950 AWJ20_2080 mRNA QCR6 NC_031674.1 323724 324818 R AWJ20_2080 complement(join(<323724..324203,324747..>324818)) Sugiyamaella lignohabitans 30033952 AWJ20_2081 mRNA AWJ20_2081 NC_031674.1 326465 327412 R AWJ20_2081 complement(<326465..>327412) Sugiyamaella lignohabitans 30033953 AWJ20_2082 mRNA AWJ20_2082 NC_031674.1 331036 332076 D AWJ20_2082 <331036..>332076 Sugiyamaella lignohabitans 30033954 AWJ20_2083 mRNA AWJ20_2083 NC_031674.1 332385 333455 R AWJ20_2083 complement(<332385..>333455) Sugiyamaella lignohabitans 30033955 AWJ20_2084 mRNA FMT1 NC_031674.1 334892 336025 D AWJ20_2084 <334892..>336025 Sugiyamaella lignohabitans 30033956 AWJ20_2085 mRNA VPS13 NC_031674.1 336117 338450 R AWJ20_2085 complement(<336117..>338450) Sugiyamaella lignohabitans 30033957 AWJ20_2086 mRNA VPS13 NC_031674.1 339147 341327 R AWJ20_2086 complement(<339147..>341327) Sugiyamaella lignohabitans 30033958 AWJ20_2087 mRNA VPS13 NC_031674.1 341788 348480 R AWJ20_2087 complement(join(<341788..341800,341872..345791,348364..>348480)) Sugiyamaella lignohabitans 30033959 AWJ20_2088 mRNA PIM1 NC_031674.1 347195 350866 D AWJ20_2088 <347195..>350866 Sugiyamaella lignohabitans 30033960 AWJ20_2089 mRNA AWJ20_2089 NC_031674.1 350365 350730 R AWJ20_2089 complement(<350365..>350730) Sugiyamaella lignohabitans 30033961 AWJ20_2090 mRNA YIP5 NC_031674.1 351424 352278 D AWJ20_2090 <351424..>352278 Sugiyamaella lignohabitans 30033963 AWJ20_2091 mRNA YVC1 NC_031674.1 352506 354461 R AWJ20_2091 complement(<352506..>354461) Sugiyamaella lignohabitans 30033964 AWJ20_2092 mRNA CIR2 NC_031674.1 356207 358228 D AWJ20_2092 <356207..>358228 Sugiyamaella lignohabitans 30033965 AWJ20_2093 mRNA NMA1 NC_031674.1 360167 361426 D AWJ20_2093 <360167..>361426 Sugiyamaella lignohabitans 30033966 AWJ20_2094 mRNA AWJ20_2094 NC_031674.1 367021 368586 D AWJ20_2094 <367021..>368586 Sugiyamaella lignohabitans 30033967 AWJ20_2095 mRNA PAN2 NC_031674.1 368795 371680 R AWJ20_2095 complement(<368795..>371680) Sugiyamaella lignohabitans 30033968 AWJ20_2097 mRNA GSH1 NC_031674.1 377609 379693 R AWJ20_2097 complement(<377609..>379693) Sugiyamaella lignohabitans 30033970 AWJ20_2098 mRNA CUP9 NC_031674.1 390180 391613 D AWJ20_2098 <390180..>391613 Sugiyamaella lignohabitans 30033971 AWJ20_2099 mRNA CTI6 NC_031674.1 392070 394457 R AWJ20_2099 complement(<392070..>394457) Sugiyamaella lignohabitans 30033972 AWJ20_2101 mRNA TCO89 NC_031674.1 395314 397683 R AWJ20_2101 complement(<395314..>397683) Sugiyamaella lignohabitans 30033976 AWJ20_2102 mRNA VPS45 NC_031674.1 399353 400633 D AWJ20_2102 <399353..>400633 Sugiyamaella lignohabitans 30033977 AWJ20_2103 mRNA CBC2 NC_031674.1 401313 401825 R AWJ20_2103 complement(<401313..>401825) Sugiyamaella lignohabitans 30033978 AWJ20_2104 mRNA DJP1 NC_031674.1 404526 406079 D AWJ20_2104 <404526..>406079 Sugiyamaella lignohabitans 30033979 AWJ20_2105 mRNA AWJ20_2105 NC_031674.1 406313 407005 R AWJ20_2105 complement(<406313..>407005) Sugiyamaella lignohabitans 30033980 AWJ20_2106 mRNA AWJ20_2106 NC_031674.1 407804 409573 R AWJ20_2106 complement(<407804..>409573) Sugiyamaella lignohabitans 30033981 AWJ20_2107 mRNA CLG1 NC_031674.1 414602 416371 D AWJ20_2107 <414602..>416371 Sugiyamaella lignohabitans 30033982 AWJ20_2108 mRNA AWJ20_2108 NC_031674.1 416740 418065 R AWJ20_2108 complement(<416740..>418065) Sugiyamaella lignohabitans 30033983 AWJ20_2109 mRNA KIP3 NC_031674.1 418614 421067 R AWJ20_2109 complement(<418614..>421067) Sugiyamaella lignohabitans 30033984 AWJ20_2110 mRNA OXA1 NC_031674.1 423686 425777 D AWJ20_2110 join(<423686..423807,424616..>425777) Sugiyamaella lignohabitans 30033986 AWJ20_2111 mRNA LPX1 NC_031674.1 425996 427117 R AWJ20_2111 complement(<425996..>427117) Sugiyamaella lignohabitans 30033987 AWJ20_2112 mRNA GAL83 NC_031674.1 429657 431081 D AWJ20_2112 <429657..>431081 Sugiyamaella lignohabitans 30033988 AWJ20_2113 mRNA BEM2 NC_031674.1 435444 441317 D AWJ20_2113 <435444..>441317 Sugiyamaella lignohabitans 30033989 AWJ20_2114 mRNA MDM34 NC_031674.1 442341 443831 D AWJ20_2114 <442341..>443831 Sugiyamaella lignohabitans 30033990 AWJ20_2115 mRNA AWJ20_2115 NC_031674.1 444091 445053 R AWJ20_2115 complement(<444091..>445053) Sugiyamaella lignohabitans 30033991 AWJ20_2116 mRNA AWJ20_2116 NC_031674.1 445482 448082 R AWJ20_2116 complement(<445482..>448082) Sugiyamaella lignohabitans 30033992 AWJ20_2117 mRNA LSC1 NC_031674.1 450004 451929 D AWJ20_2117 <450004..>451929 Sugiyamaella lignohabitans 30033993 AWJ20_2118 mRNA GTR2 NC_031674.1 452244 453203 R AWJ20_2118 complement(<452244..>453203) Sugiyamaella lignohabitans 30033994 AWJ20_2119 mRNA TYW3 NC_031674.1 454004 454867 D AWJ20_2119 <454004..>454867 Sugiyamaella lignohabitans 30033995 AWJ20_2120 mRNA DPS1 NC_031674.1 455207 456886 D AWJ20_2120 <455207..>456886 Sugiyamaella lignohabitans 30033997 AWJ20_2121 mRNA AWJ20_2121 NC_031674.1 460693 461982 D AWJ20_2121 <460693..>461982 Sugiyamaella lignohabitans 30033998 AWJ20_2122 mRNA CDC25 NC_031674.1 462016 464856 D AWJ20_2122 <462016..>464856 Sugiyamaella lignohabitans 30033999 AWJ20_2123 mRNA AWJ20_2123 NC_031674.1 466522 467007 R AWJ20_2123 complement(<466522..>467007) Sugiyamaella lignohabitans 30034000 AWJ20_2124 mRNA CCS1 NC_031674.1 468365 468910 R AWJ20_2124 complement(<468365..>468910) Sugiyamaella lignohabitans 30034001 AWJ20_2125 mRNA IMH1 NC_031674.1 470307 472679 D AWJ20_2125 <470307..>472679 Sugiyamaella lignohabitans 30034002 AWJ20_2126 mRNA CDA2 NC_031674.1 472748 473860 R AWJ20_2126 complement(<472748..>473860) Sugiyamaella lignohabitans 30034003 AWJ20_2127 mRNA ARA2 NC_031674.1 474181 475200 D AWJ20_2127 <474181..>475200 Sugiyamaella lignohabitans 30034004 AWJ20_2128 mRNA AWJ20_2128 NC_031674.1 475553 476314 R AWJ20_2128 complement(<475553..>476314) Sugiyamaella lignohabitans 30034005 AWJ20_2131 mRNA SRF1 NC_031674.1 479962 481737 D AWJ20_2131 <479962..>481737 Sugiyamaella lignohabitans 30034009 AWJ20_2132 mRNA CDC53 NC_031674.1 483005 484786 D AWJ20_2132 <483005..>484786 Sugiyamaella lignohabitans 30034010 AWJ20_2133 mRNA SPO71 NC_031674.1 484899 488738 R AWJ20_2133 complement(<484899..>488738) Sugiyamaella lignohabitans 30034011 AWJ20_2134 mRNA ATP5 NC_031674.1 489511 490152 R AWJ20_2134 complement(<489511..>490152) Sugiyamaella lignohabitans 30034012 AWJ20_2135 mRNA RML2 NC_031674.1 490818 492041 D AWJ20_2135 <490818..>492041 Sugiyamaella lignohabitans 30034013 AWJ20_2136 mRNA ASG1 NC_031674.1 492244 494664 R AWJ20_2136 complement(<492244..>494664) Sugiyamaella lignohabitans 30034014 AWJ20_2137 mRNA AWJ20_2137 NC_031674.1 499144 500355 D AWJ20_2137 <499144..>500355 Sugiyamaella lignohabitans 30034015 AWJ20_2138 mRNA AWJ20_2138 NC_031674.1 502421 504133 D AWJ20_2138 <502421..>504133 Sugiyamaella lignohabitans 30034016 AWJ20_2139 mRNA SYF1 NC_031674.1 504214 506610 R AWJ20_2139 complement(<504214..>506610) Sugiyamaella lignohabitans 30034017 AWJ20_2140 mRNA APE1 NC_031674.1 507240 508622 D AWJ20_2140 <507240..>508622 Sugiyamaella lignohabitans 30034019 AWJ20_2141 mRNA THP1 NC_031674.1 508767 510092 R AWJ20_2141 complement(<508767..>510092) Sugiyamaella lignohabitans 30034020 AWJ20_2142 mRNA AWJ20_2142 NC_031674.1 510271 511653 D AWJ20_2142 <510271..>511653 Sugiyamaella lignohabitans 30034021 AWJ20_2143 mRNA AWJ20_2143 NC_031674.1 512040 512807 R AWJ20_2143 complement(<512040..>512807) Sugiyamaella lignohabitans 30034022 AWJ20_2144 mRNA SIT4 NC_031674.1 514387 515328 D AWJ20_2144 <514387..>515328 Sugiyamaella lignohabitans 30034023 AWJ20_2145 mRNA LPX1 NC_031674.1 517358 518506 R AWJ20_2145 complement(<517358..>518506) Sugiyamaella lignohabitans 30034024 AWJ20_2146 mRNA AWJ20_2146 NC_031674.1 519024 519986 R AWJ20_2146 complement(<519024..>519986) Sugiyamaella lignohabitans 30034025 AWJ20_2147 mRNA AWJ20_2147 NC_031674.1 521272 522444 R AWJ20_2147 complement(<521272..>522444) Sugiyamaella lignohabitans 30034026 AWJ20_2148 mRNA HXT13 NC_031674.1 523091 524659 R AWJ20_2148 complement(<523091..>524659) Sugiyamaella lignohabitans 30034027 AWJ20_2149 mRNA GPI12 NC_031674.1 525656 526498 D AWJ20_2149 <525656..>526498 Sugiyamaella lignohabitans 30034028 AWJ20_2150 mRNA AWJ20_2150 NC_031674.1 526666 528402 R AWJ20_2150 complement(<526666..>528402) Sugiyamaella lignohabitans 30034030 AWJ20_2151 mRNA YEF3 NC_031674.1 528970 532134 R AWJ20_2151 complement(<528970..>532134) Sugiyamaella lignohabitans 30034031 AWJ20_2153 mRNA RCK2 NC_031674.1 535972 537381 R AWJ20_2153 complement(<535972..>537381) Sugiyamaella lignohabitans 30034033 AWJ20_2154 mRNA AWJ20_2154 NC_031674.1 537421 538278 R AWJ20_2154 complement(<537421..>538278) Sugiyamaella lignohabitans 30034034 AWJ20_2155 mRNA EMP70 NC_031674.1 541873 543564 D AWJ20_2155 <541873..>543564 Sugiyamaella lignohabitans 30034035 AWJ20_2156 mRNA EMP70 NC_031674.1 544524 546212 D AWJ20_2156 <544524..>546212 Sugiyamaella lignohabitans 30034036 AWJ20_2157 mRNA KAR3 NC_031674.1 546281 548509 R AWJ20_2157 complement(<546281..>548509) Sugiyamaella lignohabitans 30034037 AWJ20_2158 mRNA RRP15 NC_031674.1 548971 549747 D AWJ20_2158 <548971..>549747 Sugiyamaella lignohabitans 30034038 AWJ20_2159 mRNA YAH1 NC_031674.1 550014 550577 R AWJ20_2159 complement(<550014..>550577) Sugiyamaella lignohabitans 30034039 AWJ20_2160 mRNA STE6 NC_031674.1 553737 556373 R AWJ20_2160 complement(<553737..>556373) Sugiyamaella lignohabitans 30034041 AWJ20_2161 mRNA OPI3 NC_031674.1 558783 559064 D AWJ20_2161 <558783..>559064 Sugiyamaella lignohabitans 30034042 AWJ20_2162 mRNA FRE1 NC_031674.1 559225 561030 R AWJ20_2162 complement(<559225..>561030) Sugiyamaella lignohabitans 30034043 AWJ20_2163 mRNA COG6 NC_031674.1 561745 563682 D AWJ20_2163 <561745..>563682 Sugiyamaella lignohabitans 30034044 AWJ20_2164 mRNA DET1 NC_031674.1 564464 565045 D AWJ20_2164 <564464..>565045 Sugiyamaella lignohabitans 30034045 AWJ20_2165 mRNA DPH1 NC_031674.1 565208 566482 R AWJ20_2165 complement(<565208..>566482) Sugiyamaella lignohabitans 30034046 AWJ20_2166 mRNA SHQ1 NC_031674.1 566854 568209 D AWJ20_2166 <566854..>568209 Sugiyamaella lignohabitans 30034047 AWJ20_2169 mRNA CDC50 NC_031674.1 571177 572403 D AWJ20_2169 <571177..>572403 Sugiyamaella lignohabitans 30034050 AWJ20_2170 mRNA ERG6 NC_031674.1 573306 574433 D AWJ20_2170 <573306..>574433 Sugiyamaella lignohabitans 30034052 AWJ20_2171 mRNA HXT6 NC_031674.1 575960 577597 D AWJ20_2171 <575960..>577597 Sugiyamaella lignohabitans 30034053 AWJ20_2172 mRNA AGC1 NC_031674.1 578598 579479 D AWJ20_2172 <578598..>579479 Sugiyamaella lignohabitans 30034054 AWJ20_2173 mRNA FAA2 NC_031674.1 579704 581923 R AWJ20_2173 complement(<579704..>581923) Sugiyamaella lignohabitans 30034055 AWJ20_2174 mRNA NHP6B NC_031674.1 582911 583297 R AWJ20_2174 complement(<582911..>583297) Sugiyamaella lignohabitans 30034056 AWJ20_2175 mRNA ENV9 NC_031674.1 583770 584735 R AWJ20_2175 complement(<583770..>584735) Sugiyamaella lignohabitans 30034057 AWJ20_2176 mRNA DIP5 NC_031674.1 585581 587191 R AWJ20_2176 complement(<585581..>587191) Sugiyamaella lignohabitans 30034058 AWJ20_2177 mRNA RPS23B NC_031674.1 588233 588670 D AWJ20_2177 <588233..>588670 Sugiyamaella lignohabitans 30034059 AWJ20_2178 mRNA RRP9 NC_031674.1 589164 590843 R AWJ20_2178 complement(<589164..>590843) Sugiyamaella lignohabitans 30034060 AWJ20_2179 mRNA AWJ20_2179 NC_031674.1 593497 595758 R AWJ20_2179 complement(<593497..>595758) Sugiyamaella lignohabitans 30034061 AWJ20_2180 mRNA ALK2 NC_031674.1 598692 602078 D AWJ20_2180 <598692..>602078 Sugiyamaella lignohabitans 30034063 AWJ20_2181 mRNA CKB1 NC_031674.1 605132 606229 D AWJ20_2181 <605132..>606229 Sugiyamaella lignohabitans 30034064 AWJ20_2182 mRNA JAC1 NC_031674.1 606784 607383 R AWJ20_2182 complement(<606784..>607383) Sugiyamaella lignohabitans 30034065 AWJ20_2183 mRNA HXT13 NC_031674.1 609663 611222 R AWJ20_2183 complement(<609663..>611222) Sugiyamaella lignohabitans 30034066 AWJ20_2184 mRNA AWJ20_2184 NC_031674.1 615264 616211 D AWJ20_2184 <615264..>616211 Sugiyamaella lignohabitans 30034067 AWJ20_2185 mRNA YHI9 NC_031674.1 616842 617744 R AWJ20_2185 complement(<616842..>617744) Sugiyamaella lignohabitans 30034068 AWJ20_2186 mRNA HIS6 NC_031674.1 618341 619315 D AWJ20_2186 <618341..>619315 Sugiyamaella lignohabitans 30034069 AWJ20_2187 mRNA RPB3 NC_031674.1 619501 620109 R AWJ20_2187 complement(<619501..>620109) Sugiyamaella lignohabitans 30034070 AWJ20_2188 mRNA AWJ20_2188 NC_031674.1 621866 623555 R AWJ20_2188 complement(join(<621866..622651,623514..>623555)) Sugiyamaella lignohabitans 30034071 AWJ20_2190 mRNA NAT3 NC_031674.1 625411 625941 D AWJ20_2190 <625411..>625941 Sugiyamaella lignohabitans 30034074 AWJ20_2191 mRNA AWJ20_2191 NC_031674.1 626823 627266 D AWJ20_2191 <626823..>627266 Sugiyamaella lignohabitans 30034075 AWJ20_2192 mRNA UBA1 NC_031674.1 628197 631256 R AWJ20_2192 complement(<628197..>631256) Sugiyamaella lignohabitans 30034076 AWJ20_2194 mRNA AWJ20_2194 NC_031674.1 635302 636210 R AWJ20_2194 complement(join(<635302..635914,636185..>636210)) Sugiyamaella lignohabitans 30034078 AWJ20_2196 mRNA AWJ20_2196 NC_031674.1 638621 639715 D AWJ20_2196 <638621..>639715 Sugiyamaella lignohabitans 30034080 AWJ20_2197 mRNA POL92 NC_031674.1 641223 644366 R AWJ20_2197 complement(<641223..>644366) Sugiyamaella lignohabitans 30034081 AWJ20_2199 mRNA BAT1 NC_031674.1 648850 649974 D AWJ20_2199 <648850..>649974 Sugiyamaella lignohabitans 30034083 AWJ20_2200 mRNA ZTA1 NC_031674.1 650082 651068 R AWJ20_2200 complement(<650082..>651068) Sugiyamaella lignohabitans 30034086 AWJ20_2202 mRNA AWJ20_2202 NC_031674.1 653395 655200 R AWJ20_2202 complement(<653395..>655200) Sugiyamaella lignohabitans 30034088 AWJ20_2203 mRNA AWJ20_2203 NC_031674.1 657616 658770 R AWJ20_2203 complement(<657616..>658770) Sugiyamaella lignohabitans 30034089 AWJ20_2204 mRNA JLP1 NC_031674.1 659778 660935 R AWJ20_2204 complement(<659778..>660935) Sugiyamaella lignohabitans 30034090 AWJ20_2205 mRNA AWJ20_2205 NC_031674.1 662044 663009 D AWJ20_2205 <662044..>663009 Sugiyamaella lignohabitans 30034091 AWJ20_2206 mRNA UGA4 NC_031674.1 664660 664944 D AWJ20_2206 <664660..>664944 Sugiyamaella lignohabitans 30034092 AWJ20_2207 mRNA UGA4 NC_031674.1 665026 666414 D AWJ20_2207 <665026..>666414 Sugiyamaella lignohabitans 30034093 AWJ20_2208 mRNA GLE2 NC_031674.1 666928 668013 D AWJ20_2208 <666928..>668013 Sugiyamaella lignohabitans 30034094 AWJ20_2209 mRNA CSF1 NC_031674.1 668113 675045 R AWJ20_2209 complement(<668113..>675045) Sugiyamaella lignohabitans 30034095 AWJ20_2210 mRNA CSF1 NC_031674.1 675671 678307 R AWJ20_2210 complement(<675671..>678307) Sugiyamaella lignohabitans 30034097 AWJ20_2211 mRNA SAC7 NC_031674.1 679109 682111 R AWJ20_2211 complement(<679109..>682111) Sugiyamaella lignohabitans 30034098 AWJ20_2212 mRNA RVS167 NC_031674.1 685524 686900 R AWJ20_2212 complement(<685524..>686900) Sugiyamaella lignohabitans 30034099 AWJ20_2213 mRNA UTP10 NC_031674.1 690120 694215 R AWJ20_2213 complement(join(<690120..690135,690224..>694215)) Sugiyamaella lignohabitans 30034100 AWJ20_2214 mRNA AWJ20_2214 NC_031674.1 696342 697679 D AWJ20_2214 <696342..>697679 Sugiyamaella lignohabitans 30034101 AWJ20_2215 mRNA ATG11 NC_031674.1 698523 701360 D AWJ20_2215 <698523..>701360 Sugiyamaella lignohabitans 30034102 AWJ20_2216 mRNA KES1 NC_031674.1 703797 704744 D AWJ20_2216 <703797..>704744 Sugiyamaella lignohabitans 30034103 AWJ20_2217 mRNA NHP6B NC_031674.1 708842 709147 D AWJ20_2217 <708842..>709147 Sugiyamaella lignohabitans 30034104 AWJ20_2218 mRNA UBP16 NC_031674.1 709876 712212 R AWJ20_2218 complement(<709876..>712212) Sugiyamaella lignohabitans 30034105 AWJ20_2219 mRNA AWJ20_2219 NC_031674.1 713753 714229 D AWJ20_2219 <713753..>714229 Sugiyamaella lignohabitans 30034106 AWJ20_2220 mRNA AWJ20_2220 NC_031674.1 717982 720456 D AWJ20_2220 <717982..>720456 Sugiyamaella lignohabitans 30034108 AWJ20_2221 mRNA CPA1 NC_031674.1 720792 722135 R AWJ20_2221 complement(<720792..>722135) Sugiyamaella lignohabitans 30034109 AWJ20_2222 mRNA DUS4 NC_031674.1 724509 725435 R AWJ20_2222 complement(<724509..>725435) Sugiyamaella lignohabitans 30034110 AWJ20_2223 mRNA AWJ20_2223 NC_031674.1 726285 727235 D AWJ20_2223 <726285..>727235 Sugiyamaella lignohabitans 30034111 AWJ20_2224 mRNA ATG9 NC_031674.1 727652 728827 D AWJ20_2224 <727652..>728827 Sugiyamaella lignohabitans 30034112 AWJ20_2225 mRNA NOP14 NC_031674.1 729549 732047 R AWJ20_2225 complement(<729549..>732047) Sugiyamaella lignohabitans 30034113 AWJ20_2226 mRNA mus7 NC_031674.1 734402 738736 R AWJ20_2226 complement(<734402..>738736) Sugiyamaella lignohabitans 30034114 AWJ20_2227 mRNA CLD1 NC_031674.1 741159 742592 D AWJ20_2227 <741159..>742592 Sugiyamaella lignohabitans 30034115 AWJ20_2228 mRNA AWJ20_2228 NC_031674.1 742913 743299 D AWJ20_2228 <742913..>743299 Sugiyamaella lignohabitans 30034116 AWJ20_2229 mRNA AWJ20_2229 NC_031674.1 743406 743729 D AWJ20_2229 <743406..>743729 Sugiyamaella lignohabitans 30034117 AWJ20_2230 mRNA AWJ20_2230 NC_031674.1 744276 745268 R AWJ20_2230 complement(<744276..>745268) Sugiyamaella lignohabitans 30034119 AWJ20_2231 mRNA FMP41 NC_031674.1 745659 746543 D AWJ20_2231 <745659..>746543 Sugiyamaella lignohabitans 30034120 AWJ20_2232 mRNA AWJ20_2232 NC_031674.1 746887 747297 R AWJ20_2232 complement(<746887..>747297) Sugiyamaella lignohabitans 30034121 AWJ20_2233 mRNA ASG1 NC_031674.1 748030 750690 D AWJ20_2233 <748030..>750690 Sugiyamaella lignohabitans 30034122 AWJ20_2234 mRNA HOL1 NC_031674.1 750899 752398 R AWJ20_2234 complement(<750899..>752398) Sugiyamaella lignohabitans 30034123 AWJ20_2235 mRNA AWJ20_2235 NC_031674.1 753434 754681 D AWJ20_2235 <753434..>754681 Sugiyamaella lignohabitans 30034124 AWJ20_2236 mRNA CYB2 NC_031674.1 754829 756262 R AWJ20_2236 complement(<754829..>756262) Sugiyamaella lignohabitans 30034125 AWJ20_2237 mRNA AWJ20_2237 NC_031674.1 761325 762437 D AWJ20_2237 <761325..>762437 Sugiyamaella lignohabitans 30034126 AWJ20_2238 mRNA ANT1 NC_031674.1 762866 763429 R AWJ20_2238 complement(<762866..>763429) Sugiyamaella lignohabitans 30034127 AWJ20_2239 mRNA AWJ20_2239 NC_031674.1 763913 764125 R AWJ20_2239 complement(<763913..>764125) Sugiyamaella lignohabitans 30034128 AWJ20_2240 mRNA ICL1 NC_031674.1 765230 766144 D AWJ20_2240 <765230..>766144 Sugiyamaella lignohabitans 30034130 AWJ20_2241 mRNA AWJ20_2241 NC_031674.1 766804 768255 D AWJ20_2241 <766804..>768255 Sugiyamaella lignohabitans 30034131 AWJ20_2242 mRNA AWJ20_2242 NC_031674.1 768910 770523 D AWJ20_2242 <768910..>770523 Sugiyamaella lignohabitans 30034132 AWJ20_2243 mRNA CLB3 NC_031674.1 770734 771948 R AWJ20_2243 complement(<770734..>771948) Sugiyamaella lignohabitans 30034133 AWJ20_2244 mRNA TNA1 NC_031674.1 782255 783319 D AWJ20_2244 <782255..>783319 Sugiyamaella lignohabitans 30034134 AWJ20_2245 mRNA AWJ20_2245 NC_031674.1 783493 783963 R AWJ20_2245 complement(<783493..>783963) Sugiyamaella lignohabitans 30034135 AWJ20_2246 mRNA TAZ1 NC_031674.1 784705 785826 D AWJ20_2246 <784705..>785826 Sugiyamaella lignohabitans 30034136 AWJ20_2247 mRNA HFI1 NC_031674.1 786879 787613 D AWJ20_2247 <786879..>787613 Sugiyamaella lignohabitans 30034137 AWJ20_2248 mRNA HFI1 NC_031674.1 787761 788573 D AWJ20_2248 <787761..>788573 Sugiyamaella lignohabitans 30034138 AWJ20_2249 mRNA AWJ20_2249 NC_031674.1 788880 789293 R AWJ20_2249 complement(<788880..>789293) Sugiyamaella lignohabitans 30034139 AWJ20_2250 mRNA AEP3 NC_031674.1 789627 792329 D AWJ20_2250 <789627..>792329 Sugiyamaella lignohabitans 30034141 AWJ20_2251 mRNA ROX1 NC_031674.1 801844 804561 D AWJ20_2251 <801844..>804561 Sugiyamaella lignohabitans 30034142 AWJ20_2252 mRNA VTI1 NC_031674.1 805065 805475 R AWJ20_2252 complement(<805065..>805475) Sugiyamaella lignohabitans 30034143 AWJ20_2253 mRNA AWJ20_2253 NC_031674.1 805559 805786 R AWJ20_2253 complement(<805559..>805786) Sugiyamaella lignohabitans 30034144 AWJ20_2254 mRNA AWJ20_2254 NC_031674.1 806909 808876 D AWJ20_2254 <806909..>808876 Sugiyamaella lignohabitans 30034145 AWJ20_2255 mRNA MMM1 NC_031674.1 808942 810183 R AWJ20_2255 complement(<808942..>810183) Sugiyamaella lignohabitans 30034146 AWJ20_2256 mRNA KRI1 NC_031674.1 810952 812676 D AWJ20_2256 <810952..>812676 Sugiyamaella lignohabitans 30034147 AWJ20_2257 mRNA ARP4 NC_031674.1 812915 814231 R AWJ20_2257 complement(<812915..>814231) Sugiyamaella lignohabitans 30034148 AWJ20_2258 mRNA MIC60 NC_031674.1 815365 817166 D AWJ20_2258 join(<815365..815371,815470..>817166) Sugiyamaella lignohabitans 30034149 AWJ20_2259 mRNA PAP2 NC_031674.1 817387 819852 R AWJ20_2259 complement(<817387..>819852) Sugiyamaella lignohabitans 30034150 AWJ20_2260 mRNA IKS1 NC_031674.1 821500 823359 D AWJ20_2260 <821500..>823359 Sugiyamaella lignohabitans 30034152 AWJ20_2261 mRNA VPS21 NC_031674.1 823599 824246 R AWJ20_2261 complement(<823599..>824246) Sugiyamaella lignohabitans 30034153 AWJ20_2262 mRNA TAE1 NC_031674.1 826242 826967 R AWJ20_2262 complement(<826242..>826967) Sugiyamaella lignohabitans 30034154 AWJ20_2263 mRNA SEC61 NC_031674.1 829631 830581 D AWJ20_2263 <829631..>830581 Sugiyamaella lignohabitans 30034155 AWJ20_2264 mRNA MAK5 NC_031674.1 831318 833534 D AWJ20_2264 <831318..>833534 Sugiyamaella lignohabitans 30034156 AWJ20_2265 mRNA SUP45 NC_031674.1 833707 835023 R AWJ20_2265 complement(<833707..>835023) Sugiyamaella lignohabitans 30034157 AWJ20_2266 mRNA STE24 NC_031674.1 835905 837179 R AWJ20_2266 complement(<835905..>837179) Sugiyamaella lignohabitans 30034158 AWJ20_2267 mRNA MUP1 NC_031674.1 838466 840064 R AWJ20_2267 complement(<838466..>840064) Sugiyamaella lignohabitans 30034159 AWJ20_2268 mRNA AWJ20_2268 NC_031674.1 842283 843428 D AWJ20_2268 <842283..>843428 Sugiyamaella lignohabitans 30034160 AWJ20_2269 mRNA SDS3 NC_031674.1 847646 849001 D AWJ20_2269 <847646..>849001 Sugiyamaella lignohabitans 30034161 AWJ20_2270 mRNA KTR5 NC_031674.1 850608 852578 D AWJ20_2270 <850608..>852578 Sugiyamaella lignohabitans 30034163 AWJ20_2271 mRNA RPN4 NC_031674.1 853112 854551 R AWJ20_2271 complement(<853112..>854551) Sugiyamaella lignohabitans 30034164 AWJ20_2272 mRNA RAD3 NC_031674.1 857137 859443 D AWJ20_2272 <857137..>859443 Sugiyamaella lignohabitans 30034165 AWJ20_2273 mRNA AMD2 NC_031674.1 860935 862557 D AWJ20_2273 <860935..>862557 Sugiyamaella lignohabitans 30034166 AWJ20_2274 mRNA HOL1 NC_031674.1 862786 864387 R AWJ20_2274 complement(<862786..>864387) Sugiyamaella lignohabitans 30034167 AWJ20_2275 mRNA AWJ20_2275 NC_031674.1 867187 867699 D AWJ20_2275 <867187..>867699 Sugiyamaella lignohabitans 30034168 AWJ20_2276 mRNA CTF4 NC_031674.1 867921 870398 R AWJ20_2276 complement(<867921..>870398) Sugiyamaella lignohabitans 30034169 AWJ20_2277 mRNA AWJ20_2277 NC_031674.1 870960 871739 D AWJ20_2277 <870960..>871739 Sugiyamaella lignohabitans 30034170 AWJ20_2278 mRNA AWJ20_2278 NC_031674.1 871938 873827 R AWJ20_2278 complement(<871938..>873827) Sugiyamaella lignohabitans 30034171 AWJ20_2279 mRNA AWJ20_2279 NC_031674.1 875950 877872 R AWJ20_2279 complement(<875950..>877872) Sugiyamaella lignohabitans 30034172 AWJ20_2280 mRNA TMT1 NC_031674.1 880201 881082 D AWJ20_2280 <880201..>881082 Sugiyamaella lignohabitans 30034174 AWJ20_2281 mRNA HST2 NC_031674.1 881240 882298 R AWJ20_2281 complement(<881240..>882298) Sugiyamaella lignohabitans 30034175 AWJ20_2282 mRNA TAE2 NC_031674.1 883327 886815 D AWJ20_2282 <883327..>886815 Sugiyamaella lignohabitans 30034176 AWJ20_2283 mRNA RET3 NC_031674.1 887005 887598 R AWJ20_2283 complement(<887005..>887598) Sugiyamaella lignohabitans 30034177 AWJ20_2284 mRNA TAF3 NC_031674.1 888608 889438 D AWJ20_2284 <888608..>889438 Sugiyamaella lignohabitans 30034178 AWJ20_2285 mRNA LRG1 NC_031674.1 889769 890290 R AWJ20_2285 complement(<889769..>890290) Sugiyamaella lignohabitans 30034179 AWJ20_2286 mRNA LRG1 NC_031674.1 890454 894704 R AWJ20_2286 complement(<890454..>894704) Sugiyamaella lignohabitans 30034180 AWJ20_2287 mRNA AWJ20_2287 NC_031674.1 897720 900917 D AWJ20_2287 <897720..>900917 Sugiyamaella lignohabitans 30034181 AWJ20_2288 mRNA ATG2 NC_031674.1 901341 903587 D AWJ20_2288 <901341..>903587 Sugiyamaella lignohabitans 30034182 AWJ20_2289 mRNA ATG2 NC_031674.1 903791 906649 D AWJ20_2289 <903791..>906649 Sugiyamaella lignohabitans 30034183 AWJ20_2290 mRNA GAP1 NC_031674.1 907083 908549 R AWJ20_2290 complement(<907083..>908549) Sugiyamaella lignohabitans 30034185 AWJ20_2291 mRNA AWJ20_2291 NC_031674.1 909885 911462 D AWJ20_2291 <909885..>911462 Sugiyamaella lignohabitans 30034186 AWJ20_2292 mRNA SOV1 NC_031674.1 911524 913821 R AWJ20_2292 complement(<911524..>913821) Sugiyamaella lignohabitans 30034187 AWJ20_2293 mRNA YCF1 NC_031674.1 914026 918042 R AWJ20_2293 complement(<914026..>918042) Sugiyamaella lignohabitans 30034188 AWJ20_2294 mRNA SDT1 NC_031674.1 925526 926143 R AWJ20_2294 complement(<925526..>926143) Sugiyamaella lignohabitans 30034189 AWJ20_2295 mRNA IDH2 NC_031674.1 927087 928073 R AWJ20_2295 complement(<927087..>928073) Sugiyamaella lignohabitans 30034190 AWJ20_2296 mRNA AWJ20_2296 NC_031674.1 927154 927447 D AWJ20_2296 <927154..>927447 Sugiyamaella lignohabitans 30034191 AWJ20_2297 mRNA SRC1 NC_031674.1 933933 936488 R AWJ20_2297 complement(<933933..>936488) Sugiyamaella lignohabitans 30034192 AWJ20_2298 mRNA AMD1 NC_031674.1 937355 939925 D AWJ20_2298 <937355..>939925 Sugiyamaella lignohabitans 30034193 AWJ20_2299 mRNA TAH18 NC_031674.1 940172 942076 R AWJ20_2299 complement(<940172..>942076) Sugiyamaella lignohabitans 30034194 AWJ20_2300 mRNA MGE1 NC_031674.1 944999 945778 D AWJ20_2300 <944999..>945778 Sugiyamaella lignohabitans 30034197 AWJ20_2301 mRNA MSF1 NC_031674.1 946050 947468 R AWJ20_2301 complement(<946050..>947468) Sugiyamaella lignohabitans 30034198 AWJ20_2302 mRNA AWJ20_2302 NC_031674.1 946438 946851 D AWJ20_2302 <946438..>946851 Sugiyamaella lignohabitans 30034199 AWJ20_2303 mRNA MRPL16 NC_031674.1 948033 948749 D AWJ20_2303 <948033..>948749 Sugiyamaella lignohabitans 30034200 AWJ20_2304 mRNA RFC5 NC_031674.1 949020 950087 R AWJ20_2304 complement(<949020..>950087) Sugiyamaella lignohabitans 30034201 AWJ20_2305 mRNA STL1 NC_031674.1 950442 950783 R AWJ20_2305 complement(<950442..>950783) Sugiyamaella lignohabitans 30034202 AWJ20_2306 mRNA STL1 NC_031674.1 951331 951828 R AWJ20_2306 complement(<951331..>951828) Sugiyamaella lignohabitans 30034203 AWJ20_2307 mRNA STL1 NC_031674.1 951898 952176 R AWJ20_2307 complement(<951898..>952176) Sugiyamaella lignohabitans 30034204 AWJ20_2308 mRNA SPS19 NC_031674.1 955858 956838 D AWJ20_2308 <955858..>956838 Sugiyamaella lignohabitans 30034205 AWJ20_2309 mRNA AWJ20_2309 NC_031674.1 957086 957586 R AWJ20_2309 complement(<957086..>957586) Sugiyamaella lignohabitans 30034206 AWJ20_2310 mRNA DAK1 NC_031674.1 958231 959997 D AWJ20_2310 <958231..>959997 Sugiyamaella lignohabitans 30034208 AWJ20_2311 mRNA TPI1 NC_031674.1 960344 961111 D AWJ20_2311 <960344..>961111 Sugiyamaella lignohabitans 30034209 AWJ20_2312 mRNA AWJ20_2312 NC_031674.1 961621 963468 R AWJ20_2312 complement(<961621..>963468) Sugiyamaella lignohabitans 30034210 AWJ20_2315 mRNA SDS22 NC_031674.1 965639 966403 R AWJ20_2315 complement(<965639..>966403) Sugiyamaella lignohabitans 30034213 AWJ20_2316 mRNA ACP1 NC_031674.1 969267 969593 R AWJ20_2316 complement(<969267..>969593) Sugiyamaella lignohabitans 30034214 AWJ20_2317 mRNA AWJ20_2317 NC_031674.1 971377 973071 R AWJ20_2317 complement(<971377..>973071) Sugiyamaella lignohabitans 30034215 AWJ20_2318 mRNA AWJ20_2318 NC_031674.1 973386 975245 R AWJ20_2318 complement(<973386..>975245) Sugiyamaella lignohabitans 30034216 AWJ20_2319 mRNA SST2 NC_031674.1 976463 978091 R AWJ20_2319 complement(<976463..>978091) Sugiyamaella lignohabitans 30034217 AWJ20_2320 mRNA MKK2 NC_031674.1 978777 980540 R AWJ20_2320 complement(<978777..>980540) Sugiyamaella lignohabitans 30034219 AWJ20_2321 mRNA NAS6 NC_031674.1 984023 984829 D AWJ20_2321 <984023..>984829 Sugiyamaella lignohabitans 30034220 AWJ20_2322 mRNA RPL18A NC_031674.1 985327 985887 R AWJ20_2322 complement(<985327..>985887) Sugiyamaella lignohabitans 30034221 AWJ20_2323 mRNA SMI1 NC_031674.1 988923 990764 R AWJ20_2323 complement(<988923..>990764) Sugiyamaella lignohabitans 30034222 AWJ20_2324 mRNA RPS15 NC_031674.1 994160 994438 D AWJ20_2324 <994160..>994438 Sugiyamaella lignohabitans 30034223 AWJ20_2325 mRNA MTC6 NC_031674.1 994715 996325 R AWJ20_2325 complement(<994715..>996325) Sugiyamaella lignohabitans 30034224 AWJ20_2326 mRNA PHB2 NC_031674.1 999246 1000166 D AWJ20_2326 <999246..>1000166 Sugiyamaella lignohabitans 30034225 AWJ20_2327 mRNA ALT1 NC_031674.1 1003176 1004927 R AWJ20_2327 complement(<1003176..>1004927) Sugiyamaella lignohabitans 30034226 AWJ20_2328 mRNA FES1 NC_031674.1 1007175 1008038 D AWJ20_2328 <1007175..>1008038 Sugiyamaella lignohabitans 30034227 AWJ20_2329 mRNA AWJ20_2329 NC_031674.1 1008387 1009376 D AWJ20_2329 <1008387..>1009376 Sugiyamaella lignohabitans 30034228 AWJ20_2330 mRNA AWJ20_2330 NC_031674.1 1011870 1012748 D AWJ20_2330 <1011870..>1012748 Sugiyamaella lignohabitans 30034230 AWJ20_2331 mRNA DAL4 NC_031674.1 1012839 1014503 R AWJ20_2331 complement(<1012839..>1014503) Sugiyamaella lignohabitans 30034231 AWJ20_2332 mRNA DAL81 NC_031674.1 1014919 1017123 D AWJ20_2332 <1014919..>1017123 Sugiyamaella lignohabitans 30034232 AWJ20_2333 mRNA AWJ20_2333 NC_031674.1 1017146 1019029 R AWJ20_2333 complement(<1017146..>1019029) Sugiyamaella lignohabitans 30034233 AWJ20_2334 mRNA AMD2 NC_031674.1 1019388 1020035 D AWJ20_2334 <1019388..>1020035 Sugiyamaella lignohabitans 30034234 AWJ20_2335 mRNA AMD2 NC_031674.1 1020105 1020995 D AWJ20_2335 <1020105..>1020995 Sugiyamaella lignohabitans 30034235 AWJ20_2336 mRNA PKP2 NC_031674.1 1021833 1023350 D AWJ20_2336 <1021833..>1023350 Sugiyamaella lignohabitans 30034236 AWJ20_2337 mRNA DUG1 NC_031674.1 1023560 1024861 R AWJ20_2337 complement(<1023560..>1024861) Sugiyamaella lignohabitans 30034237 AWJ20_2338 mRNA CDC33 NC_031674.1 1027100 1029173 D AWJ20_2338 join(<1027100..1027320,1027700..>1029173) Sugiyamaella lignohabitans 30034238 AWJ20_2339 mRNA CHA4 NC_031674.1 1030694 1033006 D AWJ20_2339 <1030694..>1033006 Sugiyamaella lignohabitans 30034239 AWJ20_2340 mRNA mug73 NC_031674.1 1033238 1034554 R AWJ20_2340 complement(<1033238..>1034554) Sugiyamaella lignohabitans 30034241 AWJ20_2341 mRNA AWJ20_2341 NC_031674.1 1038142 1039449 D AWJ20_2341 <1038142..>1039449 Sugiyamaella lignohabitans 30034242 AWJ20_2342 mRNA STT4 NC_031674.1 1039843 1045820 D AWJ20_2342 join(<1039843..1040049,1040199..>1045820) Sugiyamaella lignohabitans 30034243 AWJ20_2343 mRNA SWI5 NC_031674.1 1046114 1047631 R AWJ20_2343 complement(<1046114..>1047631) Sugiyamaella lignohabitans 30034244 AWJ20_2344 mRNA AWJ20_2344 NC_031674.1 1049244 1049918 R AWJ20_2344 complement(<1049244..>1049918) Sugiyamaella lignohabitans 30034245 AWJ20_2345 mRNA KGD2 NC_031674.1 1051479 1052642 D AWJ20_2345 <1051479..>1052642 Sugiyamaella lignohabitans 30034246 AWJ20_2346 mRNA CKI1 NC_031674.1 1052956 1054485 R AWJ20_2346 complement(<1052956..>1054485) Sugiyamaella lignohabitans 30034247 AWJ20_2347 mRNA RIM4 NC_031674.1 1061364 1062749 D AWJ20_2347 <1061364..>1062749 Sugiyamaella lignohabitans 30034248 AWJ20_2348 mRNA ATG7 NC_031674.1 1064279 1065214 D AWJ20_2348 <1064279..>1065214 Sugiyamaella lignohabitans 30034249 AWJ20_2349 mRNA ATG7 NC_031674.1 1065299 1065733 D AWJ20_2349 <1065299..>1065733 Sugiyamaella lignohabitans 30034250 AWJ20_2350 mRNA SRP54 NC_031674.1 1066730 1068301 D AWJ20_2350 <1066730..>1068301 Sugiyamaella lignohabitans 30034252 AWJ20_2351 mRNA THR4 NC_031674.1 1068712 1070259 D AWJ20_2351 <1068712..>1070259 Sugiyamaella lignohabitans 30034253 AWJ20_2352 mRNA YSH1 NC_031674.1 1070528 1072486 R AWJ20_2352 complement(<1070528..>1072486) Sugiyamaella lignohabitans 30034254 AWJ20_2353 mRNA AWJ20_2353 NC_031674.1 1073286 1074342 D AWJ20_2353 join(<1073286..1073359,1073469..>1074342) Sugiyamaella lignohabitans 30034255 AWJ20_2354 mRNA ERJ5 NC_031674.1 1076238 1077074 D AWJ20_2354 <1076238..>1077074 Sugiyamaella lignohabitans 30034256 AWJ20_2355 mRNA SAP190 NC_031674.1 1080036 1081994 R AWJ20_2355 complement(<1080036..>1081994) Sugiyamaella lignohabitans 30034257 AWJ20_2356 mRNA SAP190 NC_031674.1 1082214 1083530 R AWJ20_2356 complement(<1082214..>1083530) Sugiyamaella lignohabitans 30034258 AWJ20_2357 mRNA AWJ20_2357 NC_031674.1 1086639 1089113 D AWJ20_2357 join(<1086639..1086772,1086965..>1089113) Sugiyamaella lignohabitans 30034259 AWJ20_2358 mRNA FRE2 NC_031674.1 1090623 1091834 D AWJ20_2358 <1090623..>1091834 Sugiyamaella lignohabitans 30034260 AWJ20_2359 mRNA SEC2 NC_031674.1 1093032 1095101 D AWJ20_2359 <1093032..>1095101 Sugiyamaella lignohabitans 30034261 AWJ20_2360 mRNA POT1 NC_031674.1 1096308 1097564 D AWJ20_2360 <1096308..>1097564 Sugiyamaella lignohabitans 30034263 AWJ20_2361 mRNA AWJ20_2361 NC_031674.1 1100322 1102295 R AWJ20_2361 complement(<1100322..>1102295) Sugiyamaella lignohabitans 30034264 AWJ20_2362 mRNA adn3 NC_031674.1 1103117 1105354 R AWJ20_2362 complement(<1103117..>1105354) Sugiyamaella lignohabitans 30034265 AWJ20_2363 mRNA AWJ20_2363 NC_031674.1 1110395 1112869 D AWJ20_2363 <1110395..>1112869 Sugiyamaella lignohabitans 30034266 AWJ20_2364 mRNA AWJ20_2364 NC_031674.1 1115209 1115835 D AWJ20_2364 <1115209..>1115835 Sugiyamaella lignohabitans 30034267 AWJ20_2365 mRNA VID30 NC_031674.1 1116038 1118752 R AWJ20_2365 complement(<1116038..>1118752) Sugiyamaella lignohabitans 30034268 AWJ20_2366 mRNA SPN1 NC_031674.1 1120497 1121939 D AWJ20_2366 <1120497..>1121939 Sugiyamaella lignohabitans 30034269 AWJ20_2367 mRNA IES1 NC_031674.1 1124688 1127354 R AWJ20_2367 complement(<1124688..>1127354) Sugiyamaella lignohabitans 30034270 AWJ20_2368 mRNA KEX2 NC_031674.1 1127948 1130788 R AWJ20_2368 complement(<1127948..>1130788) Sugiyamaella lignohabitans 30034271 AWJ20_2369 mRNA AWJ20_2369 NC_031674.1 1134055 1135047 D AWJ20_2369 <1134055..>1135047 Sugiyamaella lignohabitans 30034272 AWJ20_2370 mRNA AWJ20_2370 NC_031674.1 1136646 1138725 D AWJ20_2370 join(<1136646..1137050,1137109..>1138725) Sugiyamaella lignohabitans 30034274 AWJ20_2371 mRNA AWJ20_2371 NC_031674.1 1138783 1139100 D AWJ20_2371 <1138783..>1139100 Sugiyamaella lignohabitans 30034275 AWJ20_2372 mRNA PHO2 NC_031674.1 1141365 1143068 D AWJ20_2372 <1141365..>1143068 Sugiyamaella lignohabitans 30034276 AWJ20_2373 mRNA PTM1 NC_031674.1 1143784 1145673 D AWJ20_2373 <1143784..>1145673 Sugiyamaella lignohabitans 30034277 AWJ20_2374 mRNA RPL7B NC_031674.1 1145913 1146668 R AWJ20_2374 complement(<1145913..>1146668) Sugiyamaella lignohabitans 30034278 AWJ20_2375 mRNA RFX1 NC_031674.1 1149986 1153516 D AWJ20_2375 <1149986..>1153516 Sugiyamaella lignohabitans 30034279 AWJ20_2376 mRNA AWJ20_2376 NC_031674.1 1155104 1155835 R AWJ20_2376 complement(<1155104..>1155835) Sugiyamaella lignohabitans 30034280 AWJ20_2377 mRNA RRP14 NC_031674.1 1156905 1158342 D AWJ20_2377 join(<1156905..1156922,1156993..>1158342) Sugiyamaella lignohabitans 30034281 AWJ20_2378 mRNA AWJ20_2378 NC_031674.1 1160584 1161783 D AWJ20_2378 <1160584..>1161783 Sugiyamaella lignohabitans 30034282 AWJ20_2379 mRNA GZF3 NC_031674.1 1165136 1168093 D AWJ20_2379 <1165136..>1168093 Sugiyamaella lignohabitans 30034283 AWJ20_2380 mRNA NDE1 NC_031674.1 1168592 1170895 R AWJ20_2380 complement(<1168592..>1170895) Sugiyamaella lignohabitans 30034285 AWJ20_2381 mRNA YSC84 NC_031674.1 1172770 1174083 D AWJ20_2381 <1172770..>1174083 Sugiyamaella lignohabitans 30034286 AWJ20_2382 mRNA SPS19 NC_031674.1 1177815 1178699 D AWJ20_2382 <1177815..>1178699 Sugiyamaella lignohabitans 30034287 AWJ20_2383 mRNA AWJ20_2383 NC_031674.1 1180225 1181154 D AWJ20_2383 <1180225..>1181154 Sugiyamaella lignohabitans 30034288 AWJ20_2384 mRNA AWJ20_2384 NC_031674.1 1183244 1186285 D AWJ20_2384 <1183244..>1186285 Sugiyamaella lignohabitans 30034289 AWJ20_2385 mRNA AWJ20_2385 NC_031674.1 1187232 1188617 R AWJ20_2385 complement(<1187232..>1188617) Sugiyamaella lignohabitans 30034290 AWJ20_2386 mRNA NOG2 NC_031674.1 1189187 1190119 D AWJ20_2386 <1189187..>1190119 Sugiyamaella lignohabitans 30034291 AWJ20_2387 mRNA NOG2 NC_031674.1 1190816 1191331 D AWJ20_2387 <1190816..>1191331 Sugiyamaella lignohabitans 30034292 AWJ20_2388 mRNA AWJ20_2388 NC_031674.1 1191529 1192524 R AWJ20_2388 complement(<1191529..>1192524) Sugiyamaella lignohabitans 30034293 AWJ20_2389 mRNA MDR1 NC_031674.1 1193722 1196535 D AWJ20_2389 <1193722..>1196535 Sugiyamaella lignohabitans 30034294 AWJ20_2390 mRNA VPS28 NC_031674.1 1197361 1198131 R AWJ20_2390 complement(<1197361..>1198131) Sugiyamaella lignohabitans 30034296 AWJ20_2391 mRNA POX1 NC_031674.1 1200110 1202251 D AWJ20_2391 <1200110..>1202251 Sugiyamaella lignohabitans 30034297 AWJ20_2392 mRNA AWJ20_2392 NC_031674.1 1204625 1205914 D AWJ20_2392 <1204625..>1205914 Sugiyamaella lignohabitans 30034298 AWJ20_2393 mRNA SMM1 NC_031674.1 1214826 1215629 D AWJ20_2393 <1214826..>1215629 Sugiyamaella lignohabitans 30034299 AWJ20_2394 mRNA XKS1 NC_031674.1 1217874 1219565 R AWJ20_2394 complement(<1217874..>1219565) Sugiyamaella lignohabitans 30034300 AWJ20_2395 mRNA SPC1 NC_031674.1 1219869 1220156 R AWJ20_2395 complement(<1219869..>1220156) Sugiyamaella lignohabitans 30034301 AWJ20_2396 mRNA MCP2 NC_031674.1 1221178 1222974 R AWJ20_2396 complement(<1221178..>1222974) Sugiyamaella lignohabitans 30034302 AWJ20_2397 mRNA RMT2 NC_031674.1 1223668 1224993 D AWJ20_2397 <1223668..>1224993 Sugiyamaella lignohabitans 30034303 AWJ20_2398 mRNA ERG11 NC_031674.1 1225856 1227454 D AWJ20_2398 <1225856..>1227454 Sugiyamaella lignohabitans 30034304 AWJ20_2399 mRNA MNR2 NC_031674.1 1228151 1231531 R AWJ20_2399 complement(<1228151..>1231531) Sugiyamaella lignohabitans 30034305 AWJ20_2400 mRNA AWJ20_2400 NC_031674.1 1228659 1228877 D AWJ20_2400 <1228659..>1228877 Sugiyamaella lignohabitans 30034308 AWJ20_2401 mRNA FCP1 NC_031674.1 1234103 1236961 D AWJ20_2401 <1234103..>1236961 Sugiyamaella lignohabitans 30034309 AWJ20_2402 mRNA PRM15 NC_031674.1 1237917 1239839 D AWJ20_2402 <1237917..>1239839 Sugiyamaella lignohabitans 30034310 AWJ20_2403 mRNA VAN1 NC_031674.1 1241032 1241889 D AWJ20_2403 <1241032..>1241889 Sugiyamaella lignohabitans 30034311 AWJ20_2408 mRNA MPD1 NC_031674.1 1247909 1249009 D AWJ20_2408 <1247909..>1249009 Sugiyamaella lignohabitans 30034316 AWJ20_2409 mRNA RRP36 NC_031674.1 1251514 1252203 D AWJ20_2409 <1251514..>1252203 Sugiyamaella lignohabitans 30034317 AWJ20_2410 mRNA RDL2 NC_031674.1 1252809 1253321 R AWJ20_2410 complement(<1252809..>1253321) Sugiyamaella lignohabitans 30034319 AWJ20_2411 mRNA YBP1 NC_031674.1 1254409 1256739 D AWJ20_2411 <1254409..>1256739 Sugiyamaella lignohabitans 30034320 AWJ20_2412 mRNA HPC2 NC_031674.1 1256980 1258521 R AWJ20_2412 complement(<1256980..>1258521) Sugiyamaella lignohabitans 30034321 AWJ20_2413 mRNA GAT1 NC_031674.1 1259199 1261634 R AWJ20_2413 complement(<1259199..>1261634) Sugiyamaella lignohabitans 30034322 AWJ20_2414 mRNA AWJ20_2414 NC_031674.1 1265764 1267278 D AWJ20_2414 <1265764..>1267278 Sugiyamaella lignohabitans 30034323 AWJ20_2415 mRNA AWJ20_2415 NC_031674.1 1268608 1270092 D AWJ20_2415 <1268608..>1270092 Sugiyamaella lignohabitans 30034324 AWJ20_2416 mRNA QDR2 NC_031674.1 1272725 1274539 D AWJ20_2416 <1272725..>1274539 Sugiyamaella lignohabitans 30034325 AWJ20_2417 mRNA AWJ20_2417 NC_031674.1 1274681 1276531 R AWJ20_2417 complement(<1274681..>1276531) Sugiyamaella lignohabitans 30034326 AWJ20_2418 mRNA AWJ20_2418 NC_031674.1 1276801 1280871 R AWJ20_2418 complement(<1276801..>1280871) Sugiyamaella lignohabitans 30034327 AWJ20_2419 mRNA AWJ20_2419 NC_031674.1 1283360 1284340 D AWJ20_2419 <1283360..>1284340 Sugiyamaella lignohabitans 30034328 AWJ20_2420 mRNA DIT2 NC_031674.1 1284583 1285950 R AWJ20_2420 complement(<1284583..>1285950) Sugiyamaella lignohabitans 30034330 AWJ20_2422 mRNA SNQ2 NC_031674.1 1288152 1291880 R AWJ20_2422 complement(<1288152..>1291880) Sugiyamaella lignohabitans 30034332 AWJ20_2423 mRNA PDR12 NC_031674.1 1292034 1292681 R AWJ20_2423 complement(<1292034..>1292681) Sugiyamaella lignohabitans 30034333 AWJ20_2424 mRNA AWJ20_2424 NC_031674.1 1294391 1295758 R AWJ20_2424 complement(<1294391..>1295758) Sugiyamaella lignohabitans 30034334 AWJ20_2425 mRNA TRA1 NC_031674.1 1300606 1306854 D AWJ20_2425 <1300606..>1306854 Sugiyamaella lignohabitans 30034335 AWJ20_2426 mRNA TRA1 NC_031674.1 1307070 1311266 D AWJ20_2426 <1307070..>1311266 Sugiyamaella lignohabitans 30034336 AWJ20_2427 mRNA TRA1 NC_031674.1 1311555 1311896 D AWJ20_2427 <1311555..>1311896 Sugiyamaella lignohabitans 30034337 AWJ20_2428 mRNA DOA4 NC_031674.1 1312853 1316188 R AWJ20_2428 complement(<1312853..>1316188) Sugiyamaella lignohabitans 30034338 AWJ20_2429 mRNA LCB2 NC_031674.1 1317256 1319046 R AWJ20_2429 complement(<1317256..>1319046) Sugiyamaella lignohabitans 30034339 AWJ20_2430 mRNA TRL1 NC_031674.1 1321509 1323953 D AWJ20_2430 <1321509..>1323953 Sugiyamaella lignohabitans 30034341 AWJ20_2431 mRNA ARG3 NC_031674.1 1324199 1325152 R AWJ20_2431 complement(<1324199..>1325152) Sugiyamaella lignohabitans 30034342 AWJ20_2432 mRNA AWJ20_2432 NC_031674.1 1329038 1332046 D AWJ20_2432 <1329038..>1332046 Sugiyamaella lignohabitans 30034343 AWJ20_2433 mRNA AWJ20_2433 NC_031674.1 1334633 1336444 R AWJ20_2433 complement(<1334633..>1336444) Sugiyamaella lignohabitans 30034344 AWJ20_2434 mRNA ZRT1 NC_031674.1 1337925 1339052 R AWJ20_2434 complement(<1337925..>1339052) Sugiyamaella lignohabitans 30034345 AWJ20_2435 mRNA AWJ20_2435 NC_031674.1 1339972 1341039 D AWJ20_2435 <1339972..>1341039 Sugiyamaella lignohabitans 30034346 AWJ20_2436 mRNA AWJ20_2436 NC_031674.1 1342444 1343886 R AWJ20_2436 complement(<1342444..>1343886) Sugiyamaella lignohabitans 30034347 AWJ20_2437 mRNA AWJ20_2437 NC_031674.1 1344610 1345605 D AWJ20_2437 <1344610..>1345605 Sugiyamaella lignohabitans 30034348 AWJ20_2438 mRNA AWJ20_2438 NC_031674.1 1346137 1347597 D AWJ20_2438 <1346137..>1347597 Sugiyamaella lignohabitans 30034349 AWJ20_2439 mRNA AWJ20_2439 NC_031674.1 1347834 1349447 R AWJ20_2439 complement(<1347834..>1349447) Sugiyamaella lignohabitans 30034350 AWJ20_2441 mRNA AWJ20_2441 NC_031674.1 1353129 1354343 D AWJ20_2441 <1353129..>1354343 Sugiyamaella lignohabitans 30034353 AWJ20_2442 mRNA AWJ20_2442 NC_031674.1 1354760 1355257 D AWJ20_2442 <1354760..>1355257 Sugiyamaella lignohabitans 30034354 AWJ20_2443 mRNA SLH1 NC_031674.1 1355476 1360569 D AWJ20_2443 <1355476..>1360569 Sugiyamaella lignohabitans 30034355 AWJ20_2444 mRNA IRS4 NC_031674.1 1362015 1364837 D AWJ20_2444 <1362015..>1364837 Sugiyamaella lignohabitans 30034356 AWJ20_2445 mRNA AWJ20_2445 NC_031674.1 1365044 1367044 D AWJ20_2445 <1365044..>1367044 Sugiyamaella lignohabitans 30034357 AWJ20_2446 mRNA AWJ20_2446 NC_031674.1 1367279 1367593 R AWJ20_2446 complement(<1367279..>1367593) Sugiyamaella lignohabitans 30034358 AWJ20_2447 mRNA AWJ20_2447 NC_031674.1 1379655 1380344 D AWJ20_2447 <1379655..>1380344 Sugiyamaella lignohabitans 30034359 AWJ20_2448 mRNA SPE2 NC_031674.1 1382538 1383812 D AWJ20_2448 <1382538..>1383812 Sugiyamaella lignohabitans 30034360 AWJ20_2449 mRNA RKR1 NC_031674.1 1384879 1389171 D AWJ20_2449 <1384879..>1389171 Sugiyamaella lignohabitans 30034361 AWJ20_2450 mRNA MRPS28 NC_031674.1 1389433 1390296 D AWJ20_2450 <1389433..>1390296 Sugiyamaella lignohabitans 30034363 AWJ20_2451 mRNA MET2 NC_031674.1 1390647 1392146 R AWJ20_2451 complement(<1390647..>1392146) Sugiyamaella lignohabitans 30034364 AWJ20_2452 mRNA MTO1 NC_031674.1 1392417 1394504 R AWJ20_2452 complement(<1392417..>1394504) Sugiyamaella lignohabitans 30034365 AWJ20_2453 mRNA SAL1 NC_031674.1 1395456 1397246 D AWJ20_2453 <1395456..>1397246 Sugiyamaella lignohabitans 30034366 AWJ20_2454 mRNA FMP30 NC_031674.1 1397938 1399485 D AWJ20_2454 <1397938..>1399485 Sugiyamaella lignohabitans 30034367 AWJ20_2455 mRNA ECM31 NC_031674.1 1400554 1401573 R AWJ20_2455 complement(<1400554..>1401573) Sugiyamaella lignohabitans 30034368 AWJ20_2456 mRNA AWJ20_2456 NC_031674.1 1403089 1404405 D AWJ20_2456 <1403089..>1404405 Sugiyamaella lignohabitans 30034369 AWJ20_2457 mRNA REV7 NC_031674.1 1404839 1405546 D AWJ20_2457 <1404839..>1405546 Sugiyamaella lignohabitans 30034370 AWJ20_2458 mRNA JLP1 NC_031674.1 1407765 1408904 D AWJ20_2458 <1407765..>1408904 Sugiyamaella lignohabitans 30034371 AWJ20_2459 mRNA HER2 NC_031674.1 1409793 1410911 D AWJ20_2459 <1409793..>1410911 Sugiyamaella lignohabitans 30034372 AWJ20_2460 mRNA YTA7 NC_031674.1 1411102 1412787 R AWJ20_2460 complement(<1411102..>1412787) Sugiyamaella lignohabitans 30034374 AWJ20_2461 mRNA YTA7 NC_031674.1 1412844 1415582 R AWJ20_2461 complement(<1412844..>1415582) Sugiyamaella lignohabitans 30034375 AWJ20_2462 mRNA SRP101 NC_031674.1 1416804 1418765 D AWJ20_2462 <1416804..>1418765 Sugiyamaella lignohabitans 30034376 AWJ20_2463 mRNA PRY2 NC_031674.1 1419680 1420495 R AWJ20_2463 complement(<1419680..>1420495) Sugiyamaella lignohabitans 30034377 AWJ20_2464 mRNA YPT1 NC_031674.1 1427284 1428051 R AWJ20_2464 complement(<1427284..>1428051) Sugiyamaella lignohabitans 30034378 AWJ20_2465 mRNA GPA2 NC_031674.1 1430198 1431658 D AWJ20_2465 <1430198..>1431658 Sugiyamaella lignohabitans 30034379 AWJ20_2466 mRNA SEC7 NC_031674.1 1431905 1433332 R AWJ20_2466 complement(<1431905..>1433332) Sugiyamaella lignohabitans 30034380 AWJ20_2467 mRNA SEC7 NC_031674.1 1433472 1436852 R AWJ20_2467 complement(<1433472..>1436852) Sugiyamaella lignohabitans 30034381 AWJ20_2468 mRNA TOK1 NC_031674.1 1438640 1441702 D AWJ20_2468 <1438640..>1441702 Sugiyamaella lignohabitans 30034382 AWJ20_2469 mRNA SDH2 NC_031674.1 1443073 1443891 R AWJ20_2469 complement(<1443073..>1443891) Sugiyamaella lignohabitans 30034383 AWJ20_2470 mRNA YUH1 NC_031674.1 1449040 1449765 D AWJ20_2470 <1449040..>1449765 Sugiyamaella lignohabitans 30034385 AWJ20_2471 mRNA THP3 NC_031674.1 1449968 1451440 R AWJ20_2471 complement(<1449968..>1451440) Sugiyamaella lignohabitans 30034386 AWJ20_2472 mRNA AWJ20_2472 NC_031674.1 1452990 1454114 D AWJ20_2472 <1452990..>1454114 Sugiyamaella lignohabitans 30034387 AWJ20_2473 mRNA YPK3 NC_031674.1 1455254 1456816 D AWJ20_2473 <1455254..>1456816 Sugiyamaella lignohabitans 30034388 AWJ20_2474 mRNA TFC4 NC_031674.1 1457873 1460890 D AWJ20_2474 <1457873..>1460890 Sugiyamaella lignohabitans 30034389 AWJ20_2475 mRNA SPE3 NC_031674.1 1461845 1462726 D AWJ20_2475 <1461845..>1462726 Sugiyamaella lignohabitans 30034390 AWJ20_2476 mRNA mis18 NC_031674.1 1463381 1463761 D AWJ20_2476 <1463381..>1463761 Sugiyamaella lignohabitans 30034391 AWJ20_2477 mRNA FAF1 NC_031674.1 1464622 1464918 R AWJ20_2477 complement(<1464622..>1464918) Sugiyamaella lignohabitans 30034392 AWJ20_2478 mRNA PDA1 NC_031674.1 1466907 1468100 D AWJ20_2478 <1466907..>1468100 Sugiyamaella lignohabitans 30034393 AWJ20_2479 mRNA RAS2 NC_031674.1 1472024 1472515 D AWJ20_2479 <1472024..>1472515 Sugiyamaella lignohabitans 30034394 AWJ20_2480 mRNA VTC2 NC_031674.1 1474040 1476277 D AWJ20_2480 <1474040..>1476277 Sugiyamaella lignohabitans 30034396 AWJ20_2481 mRNA BEM1 NC_031674.1 1477388 1479493 R AWJ20_2481 complement(<1477388..>1479493) Sugiyamaella lignohabitans 30034397 AWJ20_2482 mRNA MET22 NC_031674.1 1482168 1483235 D AWJ20_2482 <1482168..>1483235 Sugiyamaella lignohabitans 30034398 AWJ20_2483 mRNA KTR1 NC_031674.1 1495183 1496370 R AWJ20_2483 complement(<1495183..>1496370) Sugiyamaella lignohabitans 30034399 AWJ20_2484 mRNA ALG6 NC_031674.1 1498471 1500624 D AWJ20_2484 <1498471..>1500624 Sugiyamaella lignohabitans 30034400 AWJ20_2485 mRNA AWJ20_2485 NC_031674.1 1501294 1502202 R AWJ20_2485 complement(<1501294..>1502202) Sugiyamaella lignohabitans 30034401 AWJ20_2486 mRNA AWJ20_2486 NC_031674.1 1503425 1503946 R AWJ20_2486 complement(<1503425..>1503946) Sugiyamaella lignohabitans 30034402 AWJ20_2487 mRNA COX18 NC_031674.1 1506338 1507327 D AWJ20_2487 <1506338..>1507327 Sugiyamaella lignohabitans 30034403 AWJ20_2488 mRNA AWJ20_2488 NC_031674.1 1508579 1511878 R AWJ20_2488 complement(<1508579..>1511878) Sugiyamaella lignohabitans 30034404 AWJ20_2489 mRNA MYO1 NC_031674.1 1512281 1515016 R AWJ20_2489 complement(<1512281..>1515016) Sugiyamaella lignohabitans 30034405 AWJ20_2490 mRNA AWJ20_2490 NC_031674.1 1515055 1515438 R AWJ20_2490 complement(<1515055..>1515438) Sugiyamaella lignohabitans 30034407 AWJ20_2491 mRNA THR1 NC_031674.1 1515724 1516782 R AWJ20_2491 complement(<1515724..>1516782) Sugiyamaella lignohabitans 30034408 AWJ20_2492 mRNA MAS2 NC_031674.1 1517357 1518853 D AWJ20_2492 <1517357..>1518853 Sugiyamaella lignohabitans 30034409 AWJ20_2493 mRNA SEC62 NC_031674.1 1519095 1519925 R AWJ20_2493 complement(<1519095..>1519925) Sugiyamaella lignohabitans 30034410 AWJ20_2494 mRNA FMP41 NC_031674.1 1521589 1522197 D AWJ20_2494 <1521589..>1522197 Sugiyamaella lignohabitans 30034411 AWJ20_2495 mRNA MTC5 NC_031674.1 1522627 1526640 D AWJ20_2495 <1522627..>1526640 Sugiyamaella lignohabitans 30034412 AWJ20_2496 mRNA TAF1 NC_031674.1 1526854 1529943 D AWJ20_2496 <1526854..>1529943 Sugiyamaella lignohabitans 30034413 AWJ20_2497 mRNA MAK11 NC_031674.1 1530754 1532079 R AWJ20_2497 complement(<1530754..>1532079) Sugiyamaella lignohabitans 30034414 AWJ20_2498 mRNA ARO1 NC_031674.1 1532557 1533159 D AWJ20_2498 <1532557..>1533159 Sugiyamaella lignohabitans 30034415 AWJ20_2499 mRNA ARO1 NC_031674.1 1533336 1537340 D AWJ20_2499 <1533336..>1537340 Sugiyamaella lignohabitans 30034416 AWJ20_2500 mRNA AWJ20_2500 NC_031674.1 1539419 1540339 D AWJ20_2500 <1539419..>1540339 Sugiyamaella lignohabitans 30034419 AWJ20_2501 mRNA SNU114 NC_031674.1 1541244 1544048 D AWJ20_2501 <1541244..>1544048 Sugiyamaella lignohabitans 30034420 AWJ20_2502 mRNA EBP2 NC_031674.1 1544153 1545367 R AWJ20_2502 complement(<1544153..>1545367) Sugiyamaella lignohabitans 30034421 AWJ20_2503 mRNA ERG20 NC_031674.1 1545638 1545982 D AWJ20_2503 <1545638..>1545982 Sugiyamaella lignohabitans 30034422 AWJ20_2504 mRNA ERG20 NC_031674.1 1546065 1546757 D AWJ20_2504 <1546065..>1546757 Sugiyamaella lignohabitans 30034423 AWJ20_2505 mRNA MDN1 NC_031674.1 1546924 1552992 R AWJ20_2505 complement(<1546924..>1552992) Sugiyamaella lignohabitans 30034424 AWJ20_2506 mRNA MDN1 NC_031674.1 1553653 1561960 R AWJ20_2506 complement(join(<1553653..1553671,1553934..>1561960)) Sugiyamaella lignohabitans 30034425 AWJ20_2507 mRNA REX3 NC_031674.1 1564247 1566082 D AWJ20_2507 <1564247..>1566082 Sugiyamaella lignohabitans 30034426 AWJ20_2509 mRNA GRE2 NC_031674.1 1570621 1571655 D AWJ20_2509 <1570621..>1571655 Sugiyamaella lignohabitans 30034428 AWJ20_2510 mRNA AFI1 NC_031674.1 1573923 1576328 D AWJ20_2510 <1573923..>1576328 Sugiyamaella lignohabitans 30034430 AWJ20_2511 mRNA SEE1 NC_031674.1 1577883 1578599 D AWJ20_2511 <1577883..>1578599 Sugiyamaella lignohabitans 30034431 AWJ20_2512 mRNA YRB2 NC_031674.1 1578884 1580509 R AWJ20_2512 complement(<1578884..>1580509) Sugiyamaella lignohabitans 30034432 AWJ20_2513 mRNA KAR3 NC_031674.1 1583496 1585196 D AWJ20_2513 <1583496..>1585196 Sugiyamaella lignohabitans 30034433 AWJ20_2514 mRNA AWJ20_2514 NC_031674.1 1585703 1585966 R AWJ20_2514 complement(<1585703..>1585966) Sugiyamaella lignohabitans 30034434 AWJ20_2515 mRNA AWJ20_2515 NC_031674.1 1587045 1587971 D AWJ20_2515 <1587045..>1587971 Sugiyamaella lignohabitans 30034435 AWJ20_2516 mRNA ZPR1 NC_031674.1 1588882 1590405 R AWJ20_2516 complement(<1588882..>1590405) Sugiyamaella lignohabitans 30034436 AWJ20_2517 mRNA MGA2 NC_031674.1 1595750 1598167 R AWJ20_2517 complement(<1595750..>1598167) Sugiyamaella lignohabitans 30034437 AWJ20_2518 mRNA MGA2 NC_031674.1 1598350 1600251 R AWJ20_2518 complement(<1598350..>1600251) Sugiyamaella lignohabitans 30034438 AWJ20_2520 mRNA REV1 NC_031674.1 1602669 1606022 D AWJ20_2520 <1602669..>1606022 Sugiyamaella lignohabitans 30034441 AWJ20_2521 mRNA CDC19 NC_031674.1 1606623 1607990 R AWJ20_2521 complement(<1606623..>1607990) Sugiyamaella lignohabitans 30034442 AWJ20_2522 mRNA AWJ20_2522 NC_031674.1 1612718 1613635 R AWJ20_2522 complement(<1612718..>1613635) Sugiyamaella lignohabitans 30034443 AWJ20_2523 mRNA LEU5 NC_031674.1 1615734 1617047 D AWJ20_2523 <1615734..>1617047 Sugiyamaella lignohabitans 30034444 AWJ20_2524 mRNA TCD2 NC_031674.1 1617338 1618687 R AWJ20_2524 complement(<1617338..>1618687) Sugiyamaella lignohabitans 30034445 AWJ20_2525 mRNA AWJ20_2525 NC_031674.1 1619905 1621110 R AWJ20_2525 complement(<1619905..>1621110) Sugiyamaella lignohabitans 30034446 AWJ20_2526 mRNA PIN3 NC_031674.1 1634704 1635279 R AWJ20_2526 complement(<1634704..>1635279) Sugiyamaella lignohabitans 30034447 AWJ20_2527 mRNA SWD2 NC_031674.1 1636407 1637432 R AWJ20_2527 complement(<1636407..>1637432) Sugiyamaella lignohabitans 30034448 AWJ20_2528 mRNA BUD17 NC_031674.1 1639552 1640559 R AWJ20_2528 complement(<1639552..>1640559) Sugiyamaella lignohabitans 30034449 AWJ20_2529 mRNA YDJ1 NC_031674.1 1641325 1642293 D AWJ20_2529 <1641325..>1642293 Sugiyamaella lignohabitans 30034450 AWJ20_2530 mRNA AWJ20_2530 NC_031674.1 1643356 1643802 R AWJ20_2530 complement(<1643356..>1643802) Sugiyamaella lignohabitans 30034452 AWJ20_2531 mRNA EMP70 NC_031674.1 1646230 1648248 R AWJ20_2531 complement(<1646230..>1648248) Sugiyamaella lignohabitans 30034453 AWJ20_2532 mRNA AWJ20_2532 NC_031674.1 1648945 1649895 R AWJ20_2532 complement(<1648945..>1649895) Sugiyamaella lignohabitans 30034454 AWJ20_2533 mRNA UGO1 NC_031674.1 1650639 1653394 R AWJ20_2533 complement(join(<1650639..1651459,1652209..>1653394)) Sugiyamaella lignohabitans 30034455 AWJ20_2534 mRNA NCA2 NC_031674.1 1658703 1660709 R AWJ20_2534 complement(<1658703..>1660709) Sugiyamaella lignohabitans 30034456 AWJ20_2535 mRNA NCE102 NC_031674.1 1663348 1663866 D AWJ20_2535 <1663348..>1663866 Sugiyamaella lignohabitans 30034457 AWJ20_2536 mRNA AWJ20_2536 NC_031674.1 1666900 1672092 R AWJ20_2536 complement(join(<1666900..1668694,1670203..1670234,1671013..>1672092)) Sugiyamaella lignohabitans 30034458 AWJ20_2539 mRNA APM3 NC_031674.1 1677053 1678393 R AWJ20_2539 complement(<1677053..>1678393) Sugiyamaella lignohabitans 30034461 AWJ20_2540 mRNA RPA190 NC_031674.1 1678948 1683672 R AWJ20_2540 complement(<1678948..>1683672) Sugiyamaella lignohabitans 30034463 AWJ20_2541 mRNA PMT1 NC_031674.1 1684744 1687542 D AWJ20_2541 <1684744..>1687542 Sugiyamaella lignohabitans 30034464 AWJ20_2542 mRNA VPS9 NC_031674.1 1687662 1690196 R AWJ20_2542 complement(<1687662..>1690196) Sugiyamaella lignohabitans 30034465 AWJ20_2543 mRNA AWJ20_2543 NC_031674.1 1693961 1695076 D AWJ20_2543 <1693961..>1695076 Sugiyamaella lignohabitans 30034466 AWJ20_2544 mRNA AWJ20_2544 NC_031674.1 1695311 1697794 R AWJ20_2544 complement(<1695311..>1697794) Sugiyamaella lignohabitans 30034467 AWJ20_2545 mRNA FLR1 NC_031674.1 1699336 1700847 R AWJ20_2545 complement(<1699336..>1700847) Sugiyamaella lignohabitans 30034468 AWJ20_2546 mRNA PDC2 NC_031674.1 1704080 1706479 D AWJ20_2546 <1704080..>1706479 Sugiyamaella lignohabitans 30034469 AWJ20_2547 mRNA NUP57 NC_031674.1 1710523 1711719 D AWJ20_2547 <1710523..>1711719 Sugiyamaella lignohabitans 30034470 AWJ20_2548 mRNA PRE10 NC_031674.1 1713568 1713879 D AWJ20_2548 <1713568..>1713879 Sugiyamaella lignohabitans 30034471 AWJ20_2549 mRNA HIS4 NC_031674.1 1715065 1717728 R AWJ20_2549 complement(<1715065..>1717728) Sugiyamaella lignohabitans 30034472 AWJ20_2550 mRNA AWJ20_2550 NC_031674.1 1715834 1716067 D AWJ20_2550 <1715834..>1716067 Sugiyamaella lignohabitans 30034474 AWJ20_2551 mRNA AWJ20_2551 NC_031674.1 1718748 1721588 R AWJ20_2551 complement(<1718748..>1721588) Sugiyamaella lignohabitans 30034475 AWJ20_2552 mRNA GLO1 NC_031674.1 1724671 1725708 R AWJ20_2552 complement(<1724671..>1725708) Sugiyamaella lignohabitans 30034476 AWJ20_2553 mRNA MCA1 NC_031674.1 1732247 1733503 R AWJ20_2553 complement(<1732247..>1733503) Sugiyamaella lignohabitans 30034477 AWJ20_2554 mRNA TIF4631 NC_031674.1 1734417 1737725 D AWJ20_2554 <1734417..>1737725 Sugiyamaella lignohabitans 30034478 AWJ20_2555 mRNA RPT6 NC_031674.1 1740781 1743707 D AWJ20_2555 join(<1740781..1741927,1743211..>1743707) Sugiyamaella lignohabitans 30034479 AWJ20_2556 mRNA YNG2 NC_031674.1 1742936 1743892 R AWJ20_2556 complement(<1742936..>1743892) Sugiyamaella lignohabitans 30034480 AWJ20_2557 mRNA AWJ20_2557 NC_031674.1 1744521 1746839 R AWJ20_2557 complement(<1744521..>1746839) Sugiyamaella lignohabitans 30034481 AWJ20_2558 mRNA PEP7 NC_031674.1 1747971 1750505 D AWJ20_2558 <1747971..>1750505 Sugiyamaella lignohabitans 30034482 AWJ20_2559 mRNA HEM15 NC_031674.1 1751991 1753004 R AWJ20_2559 complement(<1751991..>1753004) Sugiyamaella lignohabitans 30034483 AWJ20_2560 mRNA ALE1 NC_031674.1 1754427 1755818 D AWJ20_2560 <1754427..>1755818 Sugiyamaella lignohabitans 30034485 AWJ20_2561 mRNA AKR1 NC_031674.1 1756019 1758292 R AWJ20_2561 complement(<1756019..>1758292) Sugiyamaella lignohabitans 30034486 AWJ20_2562 mRNA AWJ20_2562 NC_031674.1 1759401 1761209 R AWJ20_2562 complement(<1759401..>1761209) Sugiyamaella lignohabitans 30034487 AWJ20_2563 mRNA AWJ20_2563 NC_031674.1 1765986 1766345 D AWJ20_2563 <1765986..>1766345 Sugiyamaella lignohabitans 30034488 AWJ20_2564 mRNA AWJ20_2564 NC_031674.1 1770237 1770728 D AWJ20_2564 <1770237..>1770728 Sugiyamaella lignohabitans 30034489 AWJ20_2565 mRNA PSF2 NC_031674.1 1771040 1771543 R AWJ20_2565 complement(<1771040..>1771543) Sugiyamaella lignohabitans 30034490 AWJ20_2566 mRNA ARG2 NC_031674.1 1772970 1774337 D AWJ20_2566 <1772970..>1774337 Sugiyamaella lignohabitans 30034491 AWJ20_2567 mRNA VPS4 NC_031674.1 1774859 1776016 R AWJ20_2567 complement(<1774859..>1776016) Sugiyamaella lignohabitans 30034492 AWJ20_2568 mRNA AWJ20_2568 NC_031674.1 1775481 1775816 D AWJ20_2568 <1775481..>1775816 Sugiyamaella lignohabitans 30034493 AWJ20_2569 mRNA AWJ20_2569 NC_031674.1 1776995 1777567 R AWJ20_2569 complement(<1776995..>1777567) Sugiyamaella lignohabitans 30034494 AWJ20_2570 mRNA AWJ20_2570 NC_031674.1 1780143 1781909 R AWJ20_2570 complement(<1780143..>1781909) Sugiyamaella lignohabitans 30034496 AWJ20_2572 mRNA EXO70 NC_031674.1 1784134 1785975 D AWJ20_2572 <1784134..>1785975 Sugiyamaella lignohabitans 30034498 AWJ20_2574 mRNA MNN11 NC_031674.1 1789722 1791206 D AWJ20_2574 <1789722..>1791206 Sugiyamaella lignohabitans 30034500 AWJ20_2575 mRNA SSN3 NC_031674.1 1794555 1796477 R AWJ20_2575 complement(<1794555..>1796477) Sugiyamaella lignohabitans 30034501 AWJ20_2576 mRNA AWJ20_2576 NC_031674.1 1798566 1800029 D AWJ20_2576 <1798566..>1800029 Sugiyamaella lignohabitans 30034502 AWJ20_2577 mRNA UGA4 NC_031674.1 1800278 1801870 R AWJ20_2577 complement(<1800278..>1801870) Sugiyamaella lignohabitans 30034503 AWJ20_2578 mRNA AWJ20_2578 NC_031674.1 1804923 1806038 D AWJ20_2578 <1804923..>1806038 Sugiyamaella lignohabitans 30034504 AWJ20_2579 mRNA BUD32 NC_031674.1 1807163 1807957 R AWJ20_2579 complement(<1807163..>1807957) Sugiyamaella lignohabitans 30034505 AWJ20_2580 mRNA CTS1 NC_031674.1 1810618 1812111 D AWJ20_2580 <1810618..>1812111 Sugiyamaella lignohabitans 30034507 AWJ20_2581 mRNA NNT1 NC_031674.1 1812193 1812972 R AWJ20_2581 complement(<1812193..>1812972) Sugiyamaella lignohabitans 30034508 AWJ20_2582 mRNA COQ2 NC_031674.1 1813566 1814735 D AWJ20_2582 <1813566..>1814735 Sugiyamaella lignohabitans 30034509 AWJ20_2583 mRNA JIP5 NC_031674.1 1815009 1815692 R AWJ20_2583 complement(<1815009..>1815692) Sugiyamaella lignohabitans 30034510 AWJ20_2584 mRNA AWJ20_2584 NC_031674.1 1816731 1817330 R AWJ20_2584 complement(<1816731..>1817330) Sugiyamaella lignohabitans 30034511 AWJ20_2585 mRNA TPO1 NC_031674.1 1818139 1819827 R AWJ20_2585 complement(<1818139..>1819827) Sugiyamaella lignohabitans 30034512 AWJ20_2586 mRNA TAF4 NC_031674.1 1820409 1821365 R AWJ20_2586 complement(<1820409..>1821365) Sugiyamaella lignohabitans 30034513 AWJ20_2587 mRNA RCL1 NC_031674.1 1822861 1823445 D AWJ20_2587 <1822861..>1823445 Sugiyamaella lignohabitans 30034514 AWJ20_2588 mRNA MVP1 NC_031674.1 1823929 1825791 R AWJ20_2588 complement(<1823929..>1825791) Sugiyamaella lignohabitans 30034515 AWJ20_2589 mRNA RPN7 NC_031674.1 1829369 1830607 R AWJ20_2589 complement(<1829369..>1830607) Sugiyamaella lignohabitans 30034516 AWJ20_2590 mRNA HXK2 NC_031674.1 1833762 1835171 D AWJ20_2590 <1833762..>1835171 Sugiyamaella lignohabitans 30034518 AWJ20_2591 mRNA RTG2 NC_031674.1 1835934 1837820 R AWJ20_2591 complement(<1835934..>1837820) Sugiyamaella lignohabitans 30034519 AWJ20_2592 mRNA GAP1 NC_031674.1 1842980 1844725 D AWJ20_2592 <1842980..>1844725 Sugiyamaella lignohabitans 30034520 AWJ20_2593 mRNA SNF3 NC_031674.1 1845843 1846916 R AWJ20_2593 complement(<1845843..>1846916) Sugiyamaella lignohabitans 30034521 AWJ20_2594 mRNA LEU4 NC_031674.1 1850835 1852565 R AWJ20_2594 complement(<1850835..>1852565) Sugiyamaella lignohabitans 30034522 AWJ20_2595 mRNA YAF9 NC_031674.1 1853843 1854148 R AWJ20_2595 complement(<1853843..>1854148) Sugiyamaella lignohabitans 30034523 AWJ20_2596 mRNA RER1 NC_031674.1 1855719 1856294 D AWJ20_2596 <1855719..>1856294 Sugiyamaella lignohabitans 30034524 AWJ20_2597 mRNA ARL1 NC_031674.1 1860879 1861172 D AWJ20_2597 <1860879..>1861172 Sugiyamaella lignohabitans 30034525 AWJ20_2598 mRNA CTA1 NC_031674.1 1867915 1869411 D AWJ20_2598 <1867915..>1869411 Sugiyamaella lignohabitans 30034526 AWJ20_2599 mRNA AWJ20_2599 NC_031674.1 1874015 1874824 D AWJ20_2599 <1874015..>1874824 Sugiyamaella lignohabitans 30034527 AWJ20_2600 mRNA RPS1A NC_031674.1 1875995 1876768 D AWJ20_2600 <1875995..>1876768 Sugiyamaella lignohabitans 30034530 AWJ20_2601 mRNA MVD1 NC_031674.1 1878022 1879206 D AWJ20_2601 <1878022..>1879206 Sugiyamaella lignohabitans 30034531 AWJ20_2602 mRNA PMA1 NC_031674.1 1882605 1885559 R AWJ20_2602 complement(<1882605..>1885559) Sugiyamaella lignohabitans 30034532 AWJ20_2603 mRNA REE1 NC_031674.1 1895554 1896153 R AWJ20_2603 complement(<1895554..>1896153) Sugiyamaella lignohabitans 30034533 AWJ20_2604 mRNA LEO1 NC_031674.1 1897136 1898434 D AWJ20_2604 <1897136..>1898434 Sugiyamaella lignohabitans 30034534 AWJ20_2605 mRNA EFG1 NC_031674.1 1898670 1899212 R AWJ20_2605 complement(<1898670..>1899212) Sugiyamaella lignohabitans 30034535 AWJ20_2606 mRNA TDH3 NC_031674.1 1906201 1907214 R AWJ20_2606 complement(<1906201..>1907214) Sugiyamaella lignohabitans 30034536 AWJ20_2607 mRNA IAH1 NC_031674.1 1914851 1917625 D AWJ20_2607 join(<1914851..1915534,1917257..1917305,1917600..>1917625) Sugiyamaella lignohabitans 30034537 AWJ20_2608 mRNA AWJ20_2608 NC_031674.1 1915867 1916343 R AWJ20_2608 complement(<1915867..>1916343) Sugiyamaella lignohabitans 30034538 AWJ20_2609 mRNA AWJ20_2609 NC_031674.1 1917652 1919679 D AWJ20_2609 <1917652..>1919679 Sugiyamaella lignohabitans 30034539 AWJ20_2610 mRNA TAF7 NC_031674.1 1920579 1922225 R AWJ20_2610 complement(<1920579..>1922225) Sugiyamaella lignohabitans 30034541 AWJ20_2611 mRNA MTF1 NC_031674.1 1922881 1923771 D AWJ20_2611 <1922881..>1923771 Sugiyamaella lignohabitans 30034542 AWJ20_2612 mRNA CHA4 NC_031674.1 1924897 1927785 D AWJ20_2612 <1924897..>1927785 Sugiyamaella lignohabitans 30034543 AWJ20_2613 mRNA SEC12 NC_031674.1 1928175 1930184 D AWJ20_2613 join(<1928175..1928402,1928514..>1930184) Sugiyamaella lignohabitans 30034544 AWJ20_2614 mRNA MRN1 NC_031674.1 1937161 1939482 D AWJ20_2614 <1937161..>1939482 Sugiyamaella lignohabitans 30034545 AWJ20_2615 mRNA AWJ20_2615 NC_031674.1 1941550 1942323 R AWJ20_2615 complement(<1941550..>1942323) Sugiyamaella lignohabitans 30034546 AWJ20_2616 mRNA AWJ20_2616 NC_031674.1 1943342 1945117 D AWJ20_2616 <1943342..>1945117 Sugiyamaella lignohabitans 30034547 AWJ20_2617 mRNA AWJ20_2617 NC_031674.1 1946979 1948760 R AWJ20_2617 complement(<1946979..>1948760) Sugiyamaella lignohabitans 30034548 AWJ20_2618 mRNA SIN4 NC_031674.1 1949984 1952191 D AWJ20_2618 <1949984..>1952191 Sugiyamaella lignohabitans 30034549 AWJ20_2619 mRNA AWJ20_2619 NC_031674.1 1952232 1953812 R AWJ20_2619 complement(<1952232..>1953812) Sugiyamaella lignohabitans 30034550 AWJ20_2620 mRNA CSL4 NC_031674.1 1954033 1954860 R AWJ20_2620 complement(<1954033..>1954860) Sugiyamaella lignohabitans 30034552 AWJ20_2621 mRNA TPO1 NC_031674.1 1955156 1956742 R AWJ20_2621 complement(<1955156..>1956742) Sugiyamaella lignohabitans 30034553 AWJ20_2622 mRNA BNI4 NC_031674.1 1958919 1961714 R AWJ20_2622 complement(<1958919..>1961714) Sugiyamaella lignohabitans 30034554 AWJ20_2623 mRNA AWJ20_2623 NC_031674.1 1970231 1971010 D AWJ20_2623 <1970231..>1971010 Sugiyamaella lignohabitans 30034555 AWJ20_2624 mRNA CCM1 NC_031674.1 1971430 1973766 D AWJ20_2624 <1971430..>1973766 Sugiyamaella lignohabitans 30034556 AWJ20_2625 mRNA AWJ20_2625 NC_031674.1 1974632 1976728 R AWJ20_2625 complement(<1974632..>1976728) Sugiyamaella lignohabitans 30034557 AWJ20_2626 mRNA PET100 NC_031674.1 1985640 1985879 R AWJ20_2626 complement(<1985640..>1985879) Sugiyamaella lignohabitans 30034558 AWJ20_2627 mRNA ACS2 NC_031674.1 1986410 1987942 R AWJ20_2627 complement(<1986410..>1987942) Sugiyamaella lignohabitans 30034559 AWJ20_2628 mRNA SEF1 NC_031674.1 1989988 1993503 R AWJ20_2628 complement(<1989988..>1993503) Sugiyamaella lignohabitans 30034560 AWJ20_2629 mRNA RPN8 NC_031674.1 2000405 2001448 D AWJ20_2629 <2000405..>2001448 Sugiyamaella lignohabitans 30034561 AWJ20_2631 mRNA NOP6 NC_031674.1 2002193 2002993 D AWJ20_2631 <2002193..>2002993 Sugiyamaella lignohabitans 30034564 AWJ20_2632 mRNA CDC42 NC_031674.1 2003247 2003825 R AWJ20_2632 complement(<2003247..>2003825) Sugiyamaella lignohabitans 30034565 AWJ20_2633 mRNA GPN2 NC_031674.1 2005414 2006484 D AWJ20_2633 <2005414..>2006484 Sugiyamaella lignohabitans 30034566 AWJ20_2634 mRNA AWJ20_2634 NC_031674.1 2007651 2010308 D AWJ20_2634 <2007651..>2010308 Sugiyamaella lignohabitans 30034567 AWJ20_2635 mRNA AHP1 NC_031674.1 2012482 2013000 R AWJ20_2635 complement(<2012482..>2013000) Sugiyamaella lignohabitans 30034568 AWJ20_2636 mRNA AWJ20_2636 NC_031674.1 2012675 2012896 D AWJ20_2636 <2012675..>2012896 Sugiyamaella lignohabitans 30034569 AWJ20_2637 mRNA AWJ20_2637 NC_031674.1 2014800 2015207 D AWJ20_2637 <2014800..>2015207 Sugiyamaella lignohabitans 30034570 AWJ20_2638 mRNA LAA1 NC_031674.1 2016012 2021243 D AWJ20_2638 <2016012..>2021243 Sugiyamaella lignohabitans 30034571 AWJ20_2639 mRNA NUC1 NC_031674.1 2021871 2022812 D AWJ20_2639 <2021871..>2022812 Sugiyamaella lignohabitans 30034572 AWJ20_2640 mRNA AWJ20_2640 NC_031674.1 2030584 2032523 R AWJ20_2640 complement(join(<2030584..2031256,2031704..2032313,2032505..>2032523)) Sugiyamaella lignohabitans 30034574 AWJ20_2641 mRNA AWJ20_2641 NC_031674.1 2032699 2034986 R AWJ20_2641 complement(join(<2032699..2033240,2033643..2034029,2034432..2034776,2034968..>2034986)) Sugiyamaella lignohabitans 30034575 AWJ20_2642 mRNA AWJ20_2642 NC_031674.1 2036119 2037875 R AWJ20_2642 complement(join(<2036119..2036666,2037671..>2037875)) Sugiyamaella lignohabitans 30034576 AWJ20_2643 mRNA AWJ20_2643 NC_031674.1 2037592 2042493 D AWJ20_2643 <2037592..>2042493 Sugiyamaella lignohabitans 30034577 AWJ20_2644 mRNA AWJ20_2644 NC_031674.1 2038026 2040554 R AWJ20_2644 complement(<2038026..>2040554) Sugiyamaella lignohabitans 30034578 AWJ20_2645 mRNA FMO1 NC_031674.1 2042568 2043650 R AWJ20_2645 complement(<2042568..>2043650) Sugiyamaella lignohabitans 30034579 AWJ20_2646 mRNA AWJ20_2646 NC_031674.1 2045443 2046510 R AWJ20_2646 complement(<2045443..>2046510) Sugiyamaella lignohabitans 30034580 AWJ20_2647 mRNA AWJ20_2647 NC_031674.1 2049885 2050544 R AWJ20_2647 complement(<2049885..>2050544) Sugiyamaella lignohabitans 30034581 AWJ20_2648 mRNA AWJ20_2648 NC_031674.1 2050907 2051509 R AWJ20_2648 complement(<2050907..>2051509) Sugiyamaella lignohabitans 30034582 AWJ20_2649 mRNA RAD5 NC_031674.1 2052887 2056456 R AWJ20_2649 complement(<2052887..>2056456) Sugiyamaella lignohabitans 30034583 AWJ20_2650 mRNA HKR1 NC_031674.1 2062074 2078750 D AWJ20_2650 join(<2062074..2068395,2068462..>2078750) Sugiyamaella lignohabitans 30034585 AWJ20_2651 mRNA AWJ20_2651 NC_031674.1 2064521 2065806 R AWJ20_2651 complement(join(<2064521..2065533,2065764..>2065806)) Sugiyamaella lignohabitans 30034586 AWJ20_2652 mRNA AWJ20_2652 NC_031674.1 2066051 2067382 R AWJ20_2652 complement(join(<2066051..2067297,2067352..>2067382)) Sugiyamaella lignohabitans 30034587 AWJ20_2653 mRNA AWJ20_2653 NC_031674.1 2068859 2070313 R AWJ20_2653 complement(<2068859..>2070313) Sugiyamaella lignohabitans 30034588 AWJ20_2654 mRNA pan1 NC_031674.1 2070806 2072462 R AWJ20_2654 complement(join(<2070806..2072079,2072444..>2072462)) Sugiyamaella lignohabitans 30034589 AWJ20_2655 mRNA pan1 NC_031674.1 2074703 2078694 R AWJ20_2655 complement(join(<2074703..2078043,2078170..2078584,2078662..>2078694)) Sugiyamaella lignohabitans 30034590 AWJ20_2656 mRNA GTB1 NC_031674.1 2079975 2081653 D AWJ20_2656 join(<2079975..2080062,2080128..>2081653) Sugiyamaella lignohabitans 30034591 AWJ20_2657 mRNA AWJ20_2657 NC_031674.1 2082043 2083230 D AWJ20_2657 <2082043..>2083230 Sugiyamaella lignohabitans 30034592 AWJ20_2658 mRNA PRP2 NC_031674.1 2083310 2086603 R AWJ20_2658 complement(<2083310..>2086603) Sugiyamaella lignohabitans 30034593 AWJ20_2659 mRNA RPN5 NC_031674.1 2087228 2088352 D AWJ20_2659 <2087228..>2088352 Sugiyamaella lignohabitans 30034594 AWJ20_2660 mRNA OYE3 NC_031674.1 2089548 2090657 R AWJ20_2660 complement(<2089548..>2090657) Sugiyamaella lignohabitans 30034596 AWJ20_2661 mRNA AWJ20_2661 NC_031674.1 2091310 2092068 D AWJ20_2661 <2091310..>2092068 Sugiyamaella lignohabitans 30034597 AWJ20_2662 mRNA UTP4 NC_031674.1 2092517 2094700 D AWJ20_2662 <2092517..>2094700 Sugiyamaella lignohabitans 30034598 AWJ20_2663 mRNA RPC82 NC_031674.1 2095101 2096969 R AWJ20_2663 complement(<2095101..>2096969) Sugiyamaella lignohabitans 30034599 AWJ20_2664 mRNA ATG13 NC_031674.1 2099213 2101870 D AWJ20_2664 <2099213..>2101870 Sugiyamaella lignohabitans 30034600 AWJ20_2665 mRNA TPO3 NC_031674.1 2103001 2103705 R AWJ20_2665 complement(<2103001..>2103705) Sugiyamaella lignohabitans 30034601 AWJ20_2666 mRNA LSB5 NC_031674.1 2106907 2108007 D AWJ20_2666 <2106907..>2108007 Sugiyamaella lignohabitans 30034602 AWJ20_2667 mRNA RPB2 NC_031674.1 2109200 2112631 R AWJ20_2667 complement(<2109200..>2112631) Sugiyamaella lignohabitans 30034603 AWJ20_2668 mRNA CSE1 NC_031674.1 2116068 2118698 D AWJ20_2668 <2116068..>2118698 Sugiyamaella lignohabitans 30034604 AWJ20_2669 mRNA CMS1 NC_031674.1 2119086 2119436 R AWJ20_2669 complement(<2119086..>2119436) Sugiyamaella lignohabitans 30034605 AWJ20_2670 mRNA UTP18 NC_031674.1 2119955 2121712 R AWJ20_2670 complement(<2119955..>2121712) Sugiyamaella lignohabitans 30034607 AWJ20_2671 mRNA ICE2 NC_031674.1 2127015 2128733 R AWJ20_2671 complement(<2127015..>2128733) Sugiyamaella lignohabitans 30034608 AWJ20_2672 mRNA UTP25 NC_031674.1 2129542 2131719 D AWJ20_2672 <2129542..>2131719 Sugiyamaella lignohabitans 30034609 AWJ20_2673 mRNA LAP2 NC_031674.1 2132025 2133929 D AWJ20_2673 <2132025..>2133929 Sugiyamaella lignohabitans 30034610 AWJ20_2674 mRNA AWJ20_2674 NC_031674.1 2134282 2135694 R AWJ20_2674 complement(<2134282..>2135694) Sugiyamaella lignohabitans 30034611 AWJ20_2675 mRNA ADE4 NC_031674.1 2138438 2140249 D AWJ20_2675 <2138438..>2140249 Sugiyamaella lignohabitans 30034612 AWJ20_2676 mRNA MIH1 NC_031674.1 2147167 2149374 D AWJ20_2676 <2147167..>2149374 Sugiyamaella lignohabitans 30034613 AWJ20_2677 mRNA AWJ20_2677 NC_031674.1 2149829 2150656 R AWJ20_2677 complement(<2149829..>2150656) Sugiyamaella lignohabitans 30034614 AWJ20_2678 mRNA UTP13 NC_031674.1 2151074 2153467 R AWJ20_2678 complement(<2151074..>2153467) Sugiyamaella lignohabitans 30034615 AWJ20_2679 mRNA ERG2 NC_031674.1 2155979 2156458 D AWJ20_2679 <2155979..>2156458 Sugiyamaella lignohabitans 30034616 AWJ20_2680 mRNA SPT7 NC_031674.1 2157231 2161178 D AWJ20_2680 join(<2157231..2158128,2158324..>2161178) Sugiyamaella lignohabitans 30034618 AWJ20_2681 mRNA AWJ20_2681 NC_031674.1 2160461 2161123 R AWJ20_2681 complement(<2160461..>2161123) Sugiyamaella lignohabitans 30034619 AWJ20_2682 mRNA YOS9 NC_031674.1 2161464 2163350 R AWJ20_2682 complement(<2161464..>2163350) Sugiyamaella lignohabitans 30034620 AWJ20_2683 mRNA MRPL35 NC_031674.1 2163951 2165135 D AWJ20_2683 <2163951..>2165135 Sugiyamaella lignohabitans 30034621 AWJ20_2684 mRNA AWJ20_2684 NC_031674.1 2167056 2167634 D AWJ20_2684 <2167056..>2167634 Sugiyamaella lignohabitans 30034622 AWJ20_2685 mRNA AWJ20_2685 NC_031674.1 2169500 2170405 D AWJ20_2685 <2169500..>2170405 Sugiyamaella lignohabitans 30034623 AWJ20_2686 mRNA SEC18 NC_031674.1 2170625 2172964 R AWJ20_2686 complement(<2170625..>2172964) Sugiyamaella lignohabitans 30034624 AWJ20_2687 mRNA AWJ20_2687 NC_031674.1 2176038 2179262 R AWJ20_2687 complement(<2176038..>2179262) Sugiyamaella lignohabitans 30034625 AWJ20_2688 mRNA AWJ20_2688 NC_031674.1 2181535 2181960 D AWJ20_2688 <2181535..>2181960 Sugiyamaella lignohabitans 30034626 AWJ20_2689 mRNA AWJ20_2689 NC_031674.1 2182686 2183363 D AWJ20_2689 <2182686..>2183363 Sugiyamaella lignohabitans 30034627 AWJ20_2690 mRNA AWJ20_2690 NC_031674.1 2190059 2194309 R AWJ20_2690 complement(<2190059..>2194309) Sugiyamaella lignohabitans 30034629 AWJ20_2691 mRNA AWJ20_2691 NC_031674.1 2195827 2196789 D AWJ20_2691 <2195827..>2196789 Sugiyamaella lignohabitans 30034630 AWJ20_2692 mRNA COX4 NC_031674.1 2197933 2198433 D AWJ20_2692 <2197933..>2198433 Sugiyamaella lignohabitans 30034631 AWJ20_2693 mRNA RPS26B NC_031674.1 2199899 2200261 D AWJ20_2693 <2199899..>2200261 Sugiyamaella lignohabitans 30034632 AWJ20_2694 mRNA RSC2 NC_031674.1 2204301 2206655 R AWJ20_2694 complement(<2204301..>2206655) Sugiyamaella lignohabitans 30034633 AWJ20_2695 mRNA SCW4 NC_031674.1 2207222 2208403 R AWJ20_2695 complement(<2207222..>2208403) Sugiyamaella lignohabitans 30034634 AWJ20_2696 mRNA LYS9 NC_031674.1 2216417 2217448 D AWJ20_2696 <2216417..>2217448 Sugiyamaella lignohabitans 30034635 AWJ20_2697 mRNA AWJ20_2697 NC_031674.1 2217747 2218358 R AWJ20_2697 complement(<2217747..>2218358) Sugiyamaella lignohabitans 30034636 AWJ20_2698 mRNA AWJ20_2698 NC_031674.1 2225861 2226976 D AWJ20_2698 <2225861..>2226976 Sugiyamaella lignohabitans 30034637 AWJ20_2699 mRNA UTR2 NC_031674.1 2229484 2230920 D AWJ20_2699 <2229484..>2230920 Sugiyamaella lignohabitans 30034638 AWJ20_2700 mRNA KIN4 NC_031674.1 2235521 2238304 D AWJ20_2700 <2235521..>2238304 Sugiyamaella lignohabitans 30034641 AWJ20_2701 mRNA PFF1 NC_031674.1 2239053 2242052 D AWJ20_2701 <2239053..>2242052 Sugiyamaella lignohabitans 30034642 AWJ20_2702 mRNA AWJ20_2702 NC_031674.1 2242089 2242769 R AWJ20_2702 complement(<2242089..>2242769) Sugiyamaella lignohabitans 30034643 AWJ20_2703 mRNA HSP42 NC_031674.1 2243038 2243835 R AWJ20_2703 complement(<2243038..>2243835) Sugiyamaella lignohabitans 30034644 AWJ20_2704 mRNA HEM12 NC_031674.1 2244424 2245230 R AWJ20_2704 complement(<2244424..>2245230) Sugiyamaella lignohabitans 30034645 AWJ20_2705 mRNA AML1 NC_031674.1 2246172 2246765 R AWJ20_2705 complement(<2246172..>2246765) Sugiyamaella lignohabitans 30034646 AWJ20_2706 mRNA PKP1 NC_031674.1 2250014 2250352 R AWJ20_2706 complement(<2250014..>2250352) Sugiyamaella lignohabitans 30034647 AWJ20_2707 mRNA PAM16 NC_031674.1 2252335 2252691 R AWJ20_2707 complement(<2252335..>2252691) Sugiyamaella lignohabitans 30034648 AWJ20_2708 mRNA SET3 NC_031674.1 2254886 2258131 D AWJ20_2708 <2254886..>2258131 Sugiyamaella lignohabitans 30034649 AWJ20_2709 mRNA AWJ20_2709 NC_031674.1 2260980 2262635 D AWJ20_2709 <2260980..>2262635 Sugiyamaella lignohabitans 30034650 AWJ20_2710 mRNA TSR4 NC_031674.1 2263137 2264135 D AWJ20_2710 <2263137..>2264135 Sugiyamaella lignohabitans 30034652 AWJ20_2711 mRNA IFM1 NC_031674.1 2264294 2266870 R AWJ20_2711 complement(<2264294..>2266870) Sugiyamaella lignohabitans 30034653 AWJ20_2712 mRNA UGA4 NC_031674.1 2269312 2271042 D AWJ20_2712 <2269312..>2271042 Sugiyamaella lignohabitans 30034654 AWJ20_2713 mRNA DBF4 NC_031674.1 2271297 2273318 R AWJ20_2713 complement(<2271297..>2273318) Sugiyamaella lignohabitans 30034655 AWJ20_2714 mRNA PST2 NC_031674.1 2274164 2274775 R AWJ20_2714 complement(<2274164..>2274775) Sugiyamaella lignohabitans 30034656 AWJ20_2715 mRNA YFH7 NC_031674.1 2277733 2278674 D AWJ20_2715 <2277733..>2278674 Sugiyamaella lignohabitans 30034657 AWJ20_2716 mRNA AWJ20_2716 NC_031674.1 2279564 2279887 R AWJ20_2716 complement(<2279564..>2279887) Sugiyamaella lignohabitans 30034658 AWJ20_2717 mRNA AIM45 NC_031674.1 2281030 2282052 D AWJ20_2717 <2281030..>2282052 Sugiyamaella lignohabitans 30034659 AWJ20_2718 mRNA ARG8 NC_031674.1 2282469 2283743 D AWJ20_2718 <2282469..>2283743 Sugiyamaella lignohabitans 30034660 AWJ20_2719 mRNA AWJ20_2719 NC_031674.1 2284068 2284568 R AWJ20_2719 complement(<2284068..>2284568) Sugiyamaella lignohabitans 30034661 AWJ20_2720 mRNA GDE1 NC_031674.1 2287211 2290492 D AWJ20_2720 <2287211..>2290492 Sugiyamaella lignohabitans 30034663 AWJ20_2721 mRNA vip1 NC_031674.1 2290708 2291499 R AWJ20_2721 complement(<2290708..>2291499) Sugiyamaella lignohabitans 30034664 AWJ20_2722 mRNA PMS1 NC_031674.1 2292396 2295029 D AWJ20_2722 <2292396..>2295029 Sugiyamaella lignohabitans 30034665 AWJ20_2723 mRNA RFC2 NC_031674.1 2295128 2296129 R AWJ20_2723 complement(<2295128..>2296129) Sugiyamaella lignohabitans 30034666 AWJ20_2724 mRNA LSG1 NC_031674.1 2297177 2299162 D AWJ20_2724 <2297177..>2299162 Sugiyamaella lignohabitans 30034667 AWJ20_2725 mRNA USE1 NC_031674.1 2299532 2300143 D AWJ20_2725 <2299532..>2300143 Sugiyamaella lignohabitans 30034668 AWJ20_2726 mRNA CAT8 NC_031674.1 2300475 2303342 R AWJ20_2726 complement(<2300475..>2303342) Sugiyamaella lignohabitans 30034669 AWJ20_2727 mRNA AWJ20_2727 NC_031674.1 2306622 2307161 R AWJ20_2727 complement(<2306622..>2307161) Sugiyamaella lignohabitans 30034670 AWJ20_2728 mRNA YCG1 NC_031674.1 2307296 2309251 R AWJ20_2728 complement(<2307296..>2309251) Sugiyamaella lignohabitans 30034671 AWJ20_2729 mRNA QCR2 NC_031674.1 2309725 2310987 D AWJ20_2729 <2309725..>2310987 Sugiyamaella lignohabitans 30034672 AWJ20_2730 mRNA SKI3 NC_031674.1 2311208 2315035 R AWJ20_2730 complement(<2311208..>2315035) Sugiyamaella lignohabitans 30034674 AWJ20_2731 mRNA AWJ20_2731 NC_031674.1 2317626 2318966 D AWJ20_2731 <2317626..>2318966 Sugiyamaella lignohabitans 30034675 AWJ20_2732 mRNA CDC9 NC_031674.1 2319154 2320662 R AWJ20_2732 complement(<2319154..>2320662) Sugiyamaella lignohabitans 30034676 AWJ20_2733 mRNA VHS1 NC_031674.1 2326367 2327899 D AWJ20_2733 <2326367..>2327899 Sugiyamaella lignohabitans 30034677 AWJ20_2734 mRNA CDC14 NC_031674.1 2330615 2332042 R AWJ20_2734 complement(<2330615..>2332042) Sugiyamaella lignohabitans 30034678 AWJ20_2735 mRNA FAT1 NC_031674.1 2334990 2336894 D AWJ20_2735 <2334990..>2336894 Sugiyamaella lignohabitans 30034679 AWJ20_2736 mRNA LEU2 NC_031674.1 2337096 2338190 R AWJ20_2736 complement(<2337096..>2338190) Sugiyamaella lignohabitans 30034680 AWJ20_2737 mRNA STM2 NC_031674.1 2339511 2340299 D AWJ20_2737 <2339511..>2340299 Sugiyamaella lignohabitans 30034681 AWJ20_2738 mRNA AWJ20_2738 NC_031674.1 2340582 2341199 D AWJ20_2738 <2340582..>2341199 Sugiyamaella lignohabitans 30034682 AWJ20_2740 mRNA DIT2 NC_031674.1 2342530 2344101 R AWJ20_2740 complement(<2342530..>2344101) Sugiyamaella lignohabitans 30034685 AWJ20_2741 mRNA SCP160 NC_031674.1 2347745 2351572 D AWJ20_2741 <2347745..>2351572 Sugiyamaella lignohabitans 30034686 AWJ20_2742 mRNA FCY22 NC_031674.1 2351914 2353398 R AWJ20_2742 complement(<2351914..>2353398) Sugiyamaella lignohabitans 30034687 AWJ20_2743 mRNA LYS4 NC_031674.1 2354065 2356092 D AWJ20_2743 <2354065..>2356092 Sugiyamaella lignohabitans 30034688 AWJ20_2744 mRNA SEF1 NC_031674.1 2356645 2358462 D AWJ20_2744 <2356645..>2358462 Sugiyamaella lignohabitans 30034689 AWJ20_2745 mRNA LST8 NC_031674.1 2358866 2359795 D AWJ20_2745 <2358866..>2359795 Sugiyamaella lignohabitans 30034690 AWJ20_2746 mRNA NMD2 NC_031674.1 2360185 2363758 D AWJ20_2746 join(<2360185..2360193,2360267..>2363758) Sugiyamaella lignohabitans 30034691 AWJ20_2747 mRNA PTC7 NC_031674.1 2363876 2365222 R AWJ20_2747 complement(<2363876..>2365222) Sugiyamaella lignohabitans 30034692 AWJ20_2748 mRNA AWJ20_2748 NC_031674.1 2366475 2367641 D AWJ20_2748 <2366475..>2367641 Sugiyamaella lignohabitans 30034693 AWJ20_2749 mRNA AWJ20_2749 NC_031674.1 2368984 2369415 D AWJ20_2749 <2368984..>2369415 Sugiyamaella lignohabitans 30034694 AWJ20_2750 mRNA OPT2 NC_031674.1 2369976 2371688 D AWJ20_2750 <2369976..>2371688 Sugiyamaella lignohabitans 30034696 AWJ20_2751 mRNA UFD1 NC_031674.1 2371768 2373867 R AWJ20_2751 complement(<2371768..>2373867) Sugiyamaella lignohabitans 30034697 AWJ20_2752 mRNA GAL4 NC_031674.1 2374172 2376319 R AWJ20_2752 complement(<2374172..>2376319) Sugiyamaella lignohabitans 30034698 AWJ20_2753 mRNA AWJ20_2753 NC_031674.1 2376640 2377320 R AWJ20_2753 complement(<2376640..>2377320) Sugiyamaella lignohabitans 30034699 AWJ20_2755 mRNA AWJ20_2755 NC_031674.1 2378117 2379250 R AWJ20_2755 complement(<2378117..>2379250) Sugiyamaella lignohabitans 30034701 AWJ20_2756 mRNA MNN2 NC_031674.1 2380716 2382374 D AWJ20_2756 <2380716..>2382374 Sugiyamaella lignohabitans 30034702 AWJ20_2757 mRNA AWJ20_2757 NC_031674.1 2383307 2383831 D AWJ20_2757 <2383307..>2383831 Sugiyamaella lignohabitans 30034703 AWJ20_2758 mRNA SOR1 NC_031674.1 2383891 2384982 R AWJ20_2758 complement(<2383891..>2384982) Sugiyamaella lignohabitans 30034704 AWJ20_2759 mRNA AWJ20_2759 NC_031674.1 2386297 2386914 R AWJ20_2759 complement(<2386297..>2386914) Sugiyamaella lignohabitans 30034705 AWJ20_2760 mRNA AWJ20_2760 NC_031674.1 2388536 2389951 R AWJ20_2760 complement(join(<2388536..2389820,2389884..>2389951)) Sugiyamaella lignohabitans 30034707 AWJ20_2761 mRNA AWJ20_2761 NC_031674.1 2390675 2392258 R AWJ20_2761 complement(<2390675..>2392258) Sugiyamaella lignohabitans 30034708 AWJ20_2762 mRNA FOX2 NC_031674.1 2392758 2393516 R AWJ20_2762 complement(<2392758..>2393516) Sugiyamaella lignohabitans 30034709 AWJ20_2763 mRNA HOL1 NC_031674.1 2394657 2396282 D AWJ20_2763 <2394657..>2396282 Sugiyamaella lignohabitans 30034710 AWJ20_2764 mRNA AWJ20_2764 NC_031674.1 2396662 2397963 D AWJ20_2764 <2396662..>2397963 Sugiyamaella lignohabitans 30034711 AWJ20_2765 mRNA RIO1 NC_031674.1 2401314 2402453 D AWJ20_2765 <2401314..>2402453 Sugiyamaella lignohabitans 30034712 AWJ20_2766 mRNA RTC5 NC_031674.1 2402502 2403968 R AWJ20_2766 complement(<2402502..>2403968) Sugiyamaella lignohabitans 30034713 AWJ20_2767 mRNA VMS1 NC_031674.1 2407427 2409313 D AWJ20_2767 <2407427..>2409313 Sugiyamaella lignohabitans 30034714 AWJ20_2768 mRNA RDH54 NC_031674.1 2409411 2412110 R AWJ20_2768 complement(<2409411..>2412110) Sugiyamaella lignohabitans 30034715 AWJ20_2769 mRNA RTA1 NC_031674.1 2412387 2413268 R AWJ20_2769 complement(<2412387..>2413268) Sugiyamaella lignohabitans 30034716 AWJ20_2770 mRNA ECM22 NC_031674.1 2413620 2414819 D AWJ20_2770 <2413620..>2414819 Sugiyamaella lignohabitans 30034718 AWJ20_2771 mRNA DSE4 NC_031674.1 2415002 2417857 R AWJ20_2771 complement(<2415002..>2417857) Sugiyamaella lignohabitans 30034719 AWJ20_2772 mRNA TBF1 NC_031674.1 2418866 2421550 R AWJ20_2772 complement(<2418866..>2421550) Sugiyamaella lignohabitans 30034720 AWJ20_2773 mRNA BIO2 NC_031674.1 2422447 2423646 D AWJ20_2773 <2422447..>2423646 Sugiyamaella lignohabitans 30034721 AWJ20_2774 mRNA AWJ20_2774 NC_031674.1 2423733 2425586 R AWJ20_2774 complement(<2423733..>2425586) Sugiyamaella lignohabitans 30034722 AWJ20_2775 mRNA YPS3 NC_031674.1 2427309 2428481 R AWJ20_2775 complement(<2427309..>2428481) Sugiyamaella lignohabitans 30034723 AWJ20_2776 mRNA YPS1 NC_031674.1 2429551 2430717 R AWJ20_2776 complement(<2429551..>2430717) Sugiyamaella lignohabitans 30034724 AWJ20_2779 mRNA PCM1 NC_031674.1 2435308 2436918 D AWJ20_2779 <2435308..>2436918 Sugiyamaella lignohabitans 30034727 AWJ20_2780 mRNA AWJ20_2780 NC_031674.1 2438651 2439277 D AWJ20_2780 <2438651..>2439277 Sugiyamaella lignohabitans 30034729 AWJ20_2781 mRNA spc25 NC_031674.1 2439346 2440077 R AWJ20_2781 complement(<2439346..>2440077) Sugiyamaella lignohabitans 30034730 AWJ20_2782 mRNA KEL3 NC_031674.1 2440492 2442396 D AWJ20_2782 <2440492..>2442396 Sugiyamaella lignohabitans 30034731 AWJ20_2783 mRNA AWJ20_2783 NC_031674.1 2443919 2444317 R AWJ20_2783 complement(<2443919..>2444317) Sugiyamaella lignohabitans 30034732 AWJ20_2784 mRNA AWJ20_2784 NC_031674.1 2444476 2445726 R AWJ20_2784 complement(<2444476..>2445726) Sugiyamaella lignohabitans 30034733 AWJ20_2785 mRNA MET3 NC_031674.1 2448403 2450121 D AWJ20_2785 <2448403..>2450121 Sugiyamaella lignohabitans 30034734 AWJ20_2786 mRNA AWJ20_2786 NC_031674.1 2450322 2451620 R AWJ20_2786 complement(<2450322..>2451620) Sugiyamaella lignohabitans 30034735 AWJ20_2787 mRNA CDC20 NC_031674.1 2453889 2455475 D AWJ20_2787 <2453889..>2455475 Sugiyamaella lignohabitans 30034736 AWJ20_2788 mRNA PTC1 NC_031674.1 2455669 2456817 R AWJ20_2788 complement(<2455669..>2456817) Sugiyamaella lignohabitans 30034737 AWJ20_2789 mRNA SNF4 NC_031674.1 2459689 2460750 R AWJ20_2789 complement(<2459689..>2460750) Sugiyamaella lignohabitans 30034738 AWJ20_2790 mRNA PDI1 NC_031674.1 2462028 2463578 D AWJ20_2790 <2462028..>2463578 Sugiyamaella lignohabitans 30034740 AWJ20_2791 mRNA GRH1 NC_031674.1 2463797 2465227 R AWJ20_2791 complement(<2463797..>2465227) Sugiyamaella lignohabitans 30034741 AWJ20_2792 mRNA AWJ20_2792 NC_031674.1 2471696 2473804 D AWJ20_2792 <2471696..>2473804 Sugiyamaella lignohabitans 30034742 AWJ20_2793 mRNA SWC5 NC_031674.1 2473963 2474793 R AWJ20_2793 complement(<2473963..>2474793) Sugiyamaella lignohabitans 30034743 AWJ20_2794 mRNA POL5 NC_031674.1 2476627 2479710 R AWJ20_2794 complement(<2476627..>2479710) Sugiyamaella lignohabitans 30034744 AWJ20_2795 mRNA MDL2 NC_031674.1 2481921 2484341 D AWJ20_2795 <2481921..>2484341 Sugiyamaella lignohabitans 30034745 AWJ20_2796 mRNA AWJ20_2796 NC_031674.1 2484461 2485522 R AWJ20_2796 complement(<2484461..>2485522) Sugiyamaella lignohabitans 30034746 AWJ20_2797 mRNA MET2 NC_031674.1 2486106 2487551 D AWJ20_2797 <2486106..>2487551 Sugiyamaella lignohabitans 30034747 AWJ20_2798 mRNA AWJ20_2798 NC_031674.1 2489039 2491744 D AWJ20_2798 <2489039..>2491744 Sugiyamaella lignohabitans 30034748 AWJ20_2799 mRNA DIM1 NC_031674.1 2492626 2493639 D AWJ20_2799 <2492626..>2493639 Sugiyamaella lignohabitans 30034749 AWJ20_2800 mRNA ATG26 NC_031674.1 2493818 2497213 R AWJ20_2800 complement(<2493818..>2497213) Sugiyamaella lignohabitans 30034752 AWJ20_2801 mRNA PEP12 NC_031674.1 2501805 2502560 R AWJ20_2801 complement(<2501805..>2502560) Sugiyamaella lignohabitans 30034753 AWJ20_2802 mRNA TFC3 NC_031674.1 2503976 2508106 D AWJ20_2802 <2503976..>2508106 Sugiyamaella lignohabitans 30034754 AWJ20_2803 mRNA AWJ20_2803 NC_031674.1 2508583 2509971 D AWJ20_2803 <2508583..>2509971 Sugiyamaella lignohabitans 30034755 AWJ20_2804 mRNA AWJ20_2804 NC_031674.1 2510885 2511436 D AWJ20_2804 <2510885..>2511436 Sugiyamaella lignohabitans 30034756 AWJ20_2805 mRNA ERG26 NC_031674.1 2513977 2515047 D AWJ20_2805 <2513977..>2515047 Sugiyamaella lignohabitans 30034757 AWJ20_2806 mRNA MED8 NC_031674.1 2518058 2518678 D AWJ20_2806 <2518058..>2518678 Sugiyamaella lignohabitans 30034758 AWJ20_2807 mRNA FCF2 NC_031674.1 2518885 2519757 R AWJ20_2807 complement(<2518885..>2519757) Sugiyamaella lignohabitans 30034759 AWJ20_2808 mRNA PRI2 NC_031674.1 2520047 2521441 R AWJ20_2808 complement(<2520047..>2521441) Sugiyamaella lignohabitans 30034760 AWJ20_2809 mRNA HAP5 NC_031674.1 2522522 2523514 D AWJ20_2809 <2522522..>2523514 Sugiyamaella lignohabitans 30034761 AWJ20_2810 mRNA DIC1 NC_031674.1 2525069 2525908 D AWJ20_2810 <2525069..>2525908 Sugiyamaella lignohabitans 30034763 AWJ20_2811 mRNA TOR1 NC_031674.1 2527846 2533908 R AWJ20_2811 complement(<2527846..>2533908) Sugiyamaella lignohabitans 30034764 AWJ20_2812 mRNA TOR2 NC_031674.1 2533995 2534660 R AWJ20_2812 complement(<2533995..>2534660) Sugiyamaella lignohabitans 30034765 AWJ20_2813 mRNA TMA23 NC_031674.1 2536594 2537388 D AWJ20_2813 <2536594..>2537388 Sugiyamaella lignohabitans 30034766 AWJ20_2814 mRNA SUP35 NC_031674.1 2539249 2541492 D AWJ20_2814 <2539249..>2541492 Sugiyamaella lignohabitans 30034767 AWJ20_2815 mRNA RHO1 NC_031674.1 2541949 2542545 R AWJ20_2815 complement(<2541949..>2542545) Sugiyamaella lignohabitans 30034768 AWJ20_2816 mRNA SLM2 NC_031674.1 2545686 2547560 D AWJ20_2816 <2545686..>2547560 Sugiyamaella lignohabitans 30034769 AWJ20_2817 mRNA AWJ20_2817 NC_031674.1 2547754 2549088 R AWJ20_2817 complement(<2547754..>2549088) Sugiyamaella lignohabitans 30034770 AWJ20_2818 mRNA AWJ20_2818 NC_031674.1 2549629 2549922 R AWJ20_2818 complement(<2549629..>2549922) Sugiyamaella lignohabitans 30034771 AWJ20_2819 mRNA BUD4 NC_031674.1 2550464 2552644 R AWJ20_2819 complement(<2550464..>2552644) Sugiyamaella lignohabitans 30034772 AWJ20_2820 mRNA AWJ20_2820 NC_031674.1 2554212 2555909 D AWJ20_2820 <2554212..>2555909 Sugiyamaella lignohabitans 30034774 AWJ20_2821 mRNA AWJ20_2821 NC_031674.1 2556170 2556478 R AWJ20_2821 complement(<2556170..>2556478) Sugiyamaella lignohabitans 30034775 AWJ20_2822 mRNA AWJ20_2822 NC_031674.1 2556964 2558037 R AWJ20_2822 complement(<2556964..>2558037) Sugiyamaella lignohabitans 30034776 AWJ20_2823 mRNA YMC2 NC_031674.1 2559113 2559739 D AWJ20_2823 <2559113..>2559739 Sugiyamaella lignohabitans 30034777 AWJ20_2824 mRNA AWJ20_2824 NC_031674.1 2559954 2560406 R AWJ20_2824 complement(<2559954..>2560406) Sugiyamaella lignohabitans 30034778 AWJ20_2825 mRNA YIA6 NC_031674.1 2561741 2562640 D AWJ20_2825 <2561741..>2562640 Sugiyamaella lignohabitans 30034779 AWJ20_2826 mRNA GPI14 NC_031674.1 2562843 2564390 R AWJ20_2826 complement(<2562843..>2564390) Sugiyamaella lignohabitans 30034780 AWJ20_2827 mRNA ISC1 NC_031674.1 2565301 2566599 D AWJ20_2827 <2565301..>2566599 Sugiyamaella lignohabitans 30034781 AWJ20_2828 mRNA AWJ20_2828 NC_031674.1 2568217 2572221 D AWJ20_2828 <2568217..>2572221 Sugiyamaella lignohabitans 30034782 AWJ20_2829 mRNA UFD1 NC_031674.1 2572801 2573940 D AWJ20_2829 <2572801..>2573940 Sugiyamaella lignohabitans 30034783 AWJ20_2830 mRNA AWJ20_2830 NC_031674.1 2574047 2574586 R AWJ20_2830 complement(<2574047..>2574586) Sugiyamaella lignohabitans 30034785 AWJ20_2831 mRNA AWJ20_2831 NC_031674.1 2574907 2576916 R AWJ20_2831 complement(<2574907..>2576916) Sugiyamaella lignohabitans 30034786 AWJ20_2832 mRNA ATG15 NC_031674.1 2578387 2580345 D AWJ20_2832 <2578387..>2580345 Sugiyamaella lignohabitans 30034787 AWJ20_2833 mRNA DUG2 NC_031674.1 2580679 2583387 D AWJ20_2833 <2580679..>2583387 Sugiyamaella lignohabitans 30034788 AWJ20_2834 mRNA AWJ20_2834 NC_031674.1 2585005 2585889 D AWJ20_2834 <2585005..>2585889 Sugiyamaella lignohabitans 30034789 AWJ20_2835 mRNA AWJ20_2835 NC_031674.1 2586382 2587062 D AWJ20_2835 <2586382..>2587062 Sugiyamaella lignohabitans 30034790 AWJ20_2836 mRNA SHE4 NC_031674.1 2591383 2593704 D AWJ20_2836 <2591383..>2593704 Sugiyamaella lignohabitans 30034791 AWJ20_2837 mRNA AWJ20_2837 NC_031674.1 2593780 2594652 R AWJ20_2837 complement(<2593780..>2594652) Sugiyamaella lignohabitans 30034792 AWJ20_2838 mRNA CEM1 NC_031674.1 2595225 2596493 D AWJ20_2838 <2595225..>2596493 Sugiyamaella lignohabitans 30034793 AWJ20_2840 mRNA YOX1 NC_031674.1 2599632 2600585 R AWJ20_2840 complement(<2599632..>2600585) Sugiyamaella lignohabitans 30034796 AWJ20_2841 mRNA RCR2 NC_031674.1 2602156 2602749 D AWJ20_2841 <2602156..>2602749 Sugiyamaella lignohabitans 30034797 AWJ20_2842 mRNA NCL1 NC_031674.1 2604032 2606197 R AWJ20_2842 complement(<2604032..>2606197) Sugiyamaella lignohabitans 30034798 AWJ20_2843 mRNA PNO1 NC_031674.1 2606948 2607724 D AWJ20_2843 <2606948..>2607724 Sugiyamaella lignohabitans 30034799 AWJ20_2844 mRNA CDC73 NC_031674.1 2607938 2609224 R AWJ20_2844 complement(<2607938..>2609224) Sugiyamaella lignohabitans 30034800 AWJ20_2845 mRNA YPT52 NC_031674.1 2609823 2610470 R AWJ20_2845 complement(<2609823..>2610470) Sugiyamaella lignohabitans 30034801 AWJ20_2846 mRNA AWJ20_2846 NC_031674.1 2612894 2615122 D AWJ20_2846 <2612894..>2615122 Sugiyamaella lignohabitans 30034802 AWJ20_2847 mRNA MST1 NC_031674.1 2615225 2616793 D AWJ20_2847 <2615225..>2616793 Sugiyamaella lignohabitans 30034803 AWJ20_2848 mRNA ATG17 NC_031674.1 2617063 2618511 R AWJ20_2848 complement(<2617063..>2618511) Sugiyamaella lignohabitans 30034804 AWJ20_2849 mRNA ELG1 NC_031674.1 2619905 2622874 D AWJ20_2849 <2619905..>2622874 Sugiyamaella lignohabitans 30034805 AWJ20_2850 mRNA SPT3 NC_031674.1 2623026 2623625 R AWJ20_2850 complement(<2623026..>2623625) Sugiyamaella lignohabitans 30034807 AWJ20_2851 mRNA AWJ20_2851 NC_031674.1 2624301 2626889 D AWJ20_2851 <2624301..>2626889 Sugiyamaella lignohabitans 30034808 AWJ20_2852 mRNA MIA40 NC_031674.1 2627160 2627906 R AWJ20_2852 complement(<2627160..>2627906) Sugiyamaella lignohabitans 30034809 AWJ20_2853 mRNA THI80 NC_031674.1 2628848 2629384 D AWJ20_2853 <2628848..>2629384 Sugiyamaella lignohabitans 30034810 AWJ20_2855 mRNA SEN34 NC_031674.1 2630084 2631268 R AWJ20_2855 complement(<2630084..>2631268) Sugiyamaella lignohabitans 30034812 AWJ20_2856 mRNA AWJ20_2856 NC_031674.1 2631501 2632130 R AWJ20_2856 complement(<2631501..>2632130) Sugiyamaella lignohabitans 30034813 AWJ20_2857 mRNA RPL4A NC_031674.1 2632981 2634078 R AWJ20_2857 complement(<2632981..>2634078) Sugiyamaella lignohabitans 30034814 AWJ20_2858 mRNA GLC3 NC_031674.1 2635430 2637511 D AWJ20_2858 <2635430..>2637511 Sugiyamaella lignohabitans 30034815 AWJ20_2859 mRNA FUM1 NC_031674.1 2637687 2639168 R AWJ20_2859 complement(<2637687..>2639168) Sugiyamaella lignohabitans 30034816 AWJ20_2860 mRNA RRP7 NC_031674.1 2639783 2640553 R AWJ20_2860 complement(<2639783..>2640553) Sugiyamaella lignohabitans 30034818 AWJ20_2861 mRNA RKM1 NC_031674.1 2640771 2642318 D AWJ20_2861 <2640771..>2642318 Sugiyamaella lignohabitans 30034819 AWJ20_2862 mRNA AWJ20_2862 NC_031674.1 2643145 2643660 D AWJ20_2862 <2643145..>2643660 Sugiyamaella lignohabitans 30034820 AWJ20_2863 mRNA TYW1 NC_031674.1 2646215 2648395 D AWJ20_2863 <2646215..>2648395 Sugiyamaella lignohabitans 30034821 AWJ20_2864 mRNA AWJ20_2864 NC_031674.1 2648605 2650059 D AWJ20_2864 <2648605..>2650059 Sugiyamaella lignohabitans 30034822 AWJ20_2865 mRNA ALG2 NC_031674.1 2650400 2651764 D AWJ20_2865 <2650400..>2651764 Sugiyamaella lignohabitans 30034823 AWJ20_2866 mRNA SGF73 NC_031674.1 2651909 2653291 R AWJ20_2866 complement(<2651909..>2653291) Sugiyamaella lignohabitans 30034824 AWJ20_2867 mRNA CAF16 NC_031674.1 2654524 2655063 D AWJ20_2867 <2654524..>2655063 Sugiyamaella lignohabitans 30034825 AWJ20_2868 mRNA ERG3 NC_031674.1 2656315 2657508 D AWJ20_2868 <2656315..>2657508 Sugiyamaella lignohabitans 30034826 AWJ20_2869 mRNA AWJ20_2869 NC_031674.1 2658585 2659685 R AWJ20_2869 complement(<2658585..>2659685) Sugiyamaella lignohabitans 30034827 AWJ20_2870 mRNA UFD4 NC_031674.1 2660669 2664526 R AWJ20_2870 complement(<2660669..>2664526) Sugiyamaella lignohabitans 30034829 AWJ20_2871 mRNA UFD4 NC_031674.1 2664827 2665891 R AWJ20_2871 complement(<2664827..>2665891) Sugiyamaella lignohabitans 30034830 AWJ20_2872 mRNA TEA1 NC_031674.1 2668224 2669114 R AWJ20_2872 complement(<2668224..>2669114) Sugiyamaella lignohabitans 30034831 AWJ20_2873 mRNA MCH5 NC_031674.1 2670151 2670933 D AWJ20_2873 <2670151..>2670933 Sugiyamaella lignohabitans 30034832 AWJ20_2874 mRNA RIO2 NC_031674.1 2671452 2672654 D AWJ20_2874 <2671452..>2672654 Sugiyamaella lignohabitans 30034833 AWJ20_2875 mRNA AWJ20_2875 NC_031674.1 2672930 2673322 D AWJ20_2875 <2672930..>2673322 Sugiyamaella lignohabitans 30034834 AWJ20_2876 mRNA AWJ20_2876 NC_031674.1 2674300 2674806 R AWJ20_2876 complement(<2674300..>2674806) Sugiyamaella lignohabitans 30034835 AWJ20_2877 mRNA NHA1 NC_031674.1 2676271 2678898 D AWJ20_2877 <2676271..>2678898 Sugiyamaella lignohabitans 30034836 AWJ20_2878 mRNA DIP2 NC_031674.1 2679126 2681966 R AWJ20_2878 complement(<2679126..>2681966) Sugiyamaella lignohabitans 30034837 AWJ20_2879 mRNA AWJ20_2879 NC_031674.1 2680399 2680779 D AWJ20_2879 <2680399..>2680779 Sugiyamaella lignohabitans 30034838 AWJ20_2880 mRNA ARC40 NC_031674.1 2684641 2685741 R AWJ20_2880 complement(<2684641..>2685741) Sugiyamaella lignohabitans 30034840 AWJ20_2881 mRNA ADE13 NC_031674.1 2686676 2688124 D AWJ20_2881 <2686676..>2688124 Sugiyamaella lignohabitans 30034841 AWJ20_2882 mRNA MED7 NC_031674.1 2688346 2689284 R AWJ20_2882 complement(<2688346..>2689284) Sugiyamaella lignohabitans 30034842 AWJ20_2883 mRNA AWJ20_2883 NC_031674.1 2692676 2693362 R AWJ20_2883 complement(<2692676..>2693362) Sugiyamaella lignohabitans 30034843 AWJ20_2884 mRNA ARP3 NC_031674.1 2700160 2701137 D AWJ20_2884 <2700160..>2701137 Sugiyamaella lignohabitans 30034844 AWJ20_2885 mRNA IMG2 NC_031674.1 2701356 2701838 R AWJ20_2885 complement(<2701356..>2701838) Sugiyamaella lignohabitans 30034845 AWJ20_2886 mRNA DPL1 NC_031674.1 2703375 2704814 D AWJ20_2886 <2703375..>2704814 Sugiyamaella lignohabitans 30034846 AWJ20_2887 mRNA AWJ20_2887 NC_031674.1 2705699 2707375 D AWJ20_2887 <2705699..>2707375 Sugiyamaella lignohabitans 30034847 AWJ20_2888 mRNA BOP3 NC_031674.1 2709688 2712066 D AWJ20_2888 <2709688..>2712066 Sugiyamaella lignohabitans 30034848 AWJ20_2889 mRNA FRE8 NC_031674.1 2712230 2713363 R AWJ20_2889 complement(<2712230..>2713363) Sugiyamaella lignohabitans 30034849 AWJ20_2890 mRNA ISN1 NC_031674.1 2717483 2718058 D AWJ20_2890 <2717483..>2718058 Sugiyamaella lignohabitans 30034851 AWJ20_2891 mRNA CSM3 NC_031674.1 2718207 2719151 R AWJ20_2891 complement(<2718207..>2719151) Sugiyamaella lignohabitans 30034852 AWJ20_2892 mRNA PPE1 NC_031674.1 2719378 2720622 D AWJ20_2892 <2719378..>2720622 Sugiyamaella lignohabitans 30034853 AWJ20_2893 mRNA QNS1 NC_031674.1 2720866 2723028 R AWJ20_2893 complement(<2720866..>2723028) Sugiyamaella lignohabitans 30034854 AWJ20_2894 mRNA PRO1 NC_031674.1 2723690 2724901 D AWJ20_2894 <2723690..>2724901 Sugiyamaella lignohabitans 30034855 AWJ20_2895 mRNA NCS2 NC_031674.1 2725081 2726298 R AWJ20_2895 complement(<2725081..>2726298) Sugiyamaella lignohabitans 30034856 AWJ20_2896 mRNA PIH1 NC_031674.1 2726546 2727511 R AWJ20_2896 complement(<2726546..>2727511) Sugiyamaella lignohabitans 30034857 AWJ20_2897 mRNA AWJ20_2897 NC_031674.1 2728125 2728577 D AWJ20_2897 <2728125..>2728577 Sugiyamaella lignohabitans 30034858 AWJ20_2898 mRNA CPR1 NC_031674.1 2728639 2730582 R AWJ20_2898 complement(<2728639..>2730582) Sugiyamaella lignohabitans 30034859 AWJ20_2899 mRNA AWJ20_2899 NC_031674.1 2731402 2732190 D AWJ20_2899 <2731402..>2732190 Sugiyamaella lignohabitans 30034860 AWJ20_2900 mRNA TOS3 NC_031674.1 2732269 2734554 R AWJ20_2900 complement(<2732269..>2734554) Sugiyamaella lignohabitans 30034863 AWJ20_2901 mRNA MDH1 NC_031674.1 2735817 2736824 R AWJ20_2901 complement(<2735817..>2736824) Sugiyamaella lignohabitans 30034864 AWJ20_2902 mRNA AWJ20_2902 NC_031674.1 2736442 2736687 D AWJ20_2902 <2736442..>2736687 Sugiyamaella lignohabitans 30034865 AWJ20_2903 mRNA AWJ20_2903 NC_031674.1 2740707 2742203 R AWJ20_2903 complement(<2740707..>2742203) Sugiyamaella lignohabitans 30034866 AWJ20_2904 mRNA AWJ20_2904 NC_031674.1 2742982 2744490 R AWJ20_2904 complement(<2742982..>2744490) Sugiyamaella lignohabitans 30034867 AWJ20_2905 mRNA CCC2 NC_031674.1 2744911 2747919 R AWJ20_2905 complement(<2744911..>2747919) Sugiyamaella lignohabitans 30034868 AWJ20_2906 mRNA VAC8 NC_031674.1 2748871 2750556 R AWJ20_2906 complement(<2748871..>2750556) Sugiyamaella lignohabitans 30034869 AWJ20_2907 mRNA EDC3 NC_031674.1 2754890 2756626 R AWJ20_2907 complement(<2754890..>2756626) Sugiyamaella lignohabitans 30034870 AWJ20_2908 mRNA AWJ20_2908 NC_031674.1 2757442 2759508 R AWJ20_2908 complement(<2757442..>2759508) Sugiyamaella lignohabitans 30034871 AWJ20_2909 mRNA AWJ20_2909 NC_031674.1 2768751 2769980 D AWJ20_2909 <2768751..>2769980 Sugiyamaella lignohabitans 30034872 AWJ20_2910 mRNA YPS3 NC_031674.1 2770452 2771756 D AWJ20_2910 <2770452..>2771756 Sugiyamaella lignohabitans 30034874 AWJ20_2911 mRNA CHK1 NC_031674.1 2771850 2773145 R AWJ20_2911 complement(<2771850..>2773145) Sugiyamaella lignohabitans 30034875 AWJ20_2912 mRNA AWJ20_2912 NC_031674.1 2773675 2775024 R AWJ20_2912 complement(<2773675..>2775024) Sugiyamaella lignohabitans 30034876 AWJ20_2913 mRNA PDA1 NC_031674.1 2776052 2777512 R AWJ20_2913 complement(<2776052..>2777512) Sugiyamaella lignohabitans 30034877 AWJ20_2914 mRNA PAH1 NC_031674.1 2781619 2783778 D AWJ20_2914 <2781619..>2783778 Sugiyamaella lignohabitans 30034878 AWJ20_2916 mRNA PRP39 NC_031674.1 2784654 2786297 D AWJ20_2916 <2784654..>2786297 Sugiyamaella lignohabitans 30034880 AWJ20_2917 mRNA SCY1 NC_031674.1 2787315 2789639 D AWJ20_2917 <2787315..>2789639 Sugiyamaella lignohabitans 30034881 AWJ20_2918 mRNA VMA13 NC_031674.1 2789823 2791241 R AWJ20_2918 complement(join(<2789823..2791118,2791194..>2791241)) Sugiyamaella lignohabitans 30034882 AWJ20_2919 mRNA PTR2 NC_031674.1 2795839 2797593 D AWJ20_2919 <2795839..>2797593 Sugiyamaella lignohabitans 30034883 AWJ20_2920 mRNA AWJ20_2920 NC_031674.1 2796826 2797149 R AWJ20_2920 complement(<2796826..>2797149) Sugiyamaella lignohabitans 30034885 AWJ20_2921 mRNA LOC1 NC_031674.1 2797947 2798513 R AWJ20_2921 complement(<2797947..>2798513) Sugiyamaella lignohabitans 30034886 AWJ20_2922 mRNA AWJ20_2922 NC_031674.1 2799157 2799639 D AWJ20_2922 <2799157..>2799639 Sugiyamaella lignohabitans 30034887 AWJ20_2923 mRNA RAD23 NC_031674.1 2802199 2803158 D AWJ20_2923 <2802199..>2803158 Sugiyamaella lignohabitans 30034888 AWJ20_2924 mRNA AWJ20_2924 NC_031674.1 2803300 2803941 R AWJ20_2924 complement(<2803300..>2803941) Sugiyamaella lignohabitans 30034889 AWJ20_2925 mRNA SYO1 NC_031674.1 2804542 2806548 R AWJ20_2925 complement(<2804542..>2806548) Sugiyamaella lignohabitans 30034890 AWJ20_2926 mRNA TRM11 NC_031674.1 2806727 2808055 R AWJ20_2926 complement(<2806727..>2808055) Sugiyamaella lignohabitans 30034891 AWJ20_2927 mRNA HRP1 NC_031674.1 2809243 2810427 D AWJ20_2927 <2809243..>2810427 Sugiyamaella lignohabitans 30034892 AWJ20_2928 mRNA ZRT3 NC_031674.1 2811468 2812877 D AWJ20_2928 <2811468..>2812877 Sugiyamaella lignohabitans 30034893 AWJ20_2929 mRNA SMF1 NC_031674.1 2813035 2814702 R AWJ20_2929 complement(<2813035..>2814702) Sugiyamaella lignohabitans 30034894 AWJ20_2930 mRNA ASF1 NC_031674.1 2815852 2816837 R AWJ20_2930 complement(join(<2815852..2816204,2816627..>2816837)) Sugiyamaella lignohabitans 30034896 AWJ20_2931 mRNA ITR1 NC_031674.1 2818807 2820654 D AWJ20_2931 <2818807..>2820654 Sugiyamaella lignohabitans 30034897 AWJ20_2932 mRNA SPO14 NC_031674.1 2821574 2826457 D AWJ20_2932 <2821574..>2826457 Sugiyamaella lignohabitans 30034898 AWJ20_2933 mRNA PPZ1 NC_031674.1 2828685 2830736 R AWJ20_2933 complement(<2828685..>2830736) Sugiyamaella lignohabitans 30034899 AWJ20_2934 mRNA CDC45 NC_031674.1 2831431 2833476 R AWJ20_2934 complement(<2831431..>2833476) Sugiyamaella lignohabitans 30034900 AWJ20_2935 mRNA AWJ20_2935 NC_031674.1 2835052 2836026 D AWJ20_2935 <2835052..>2836026 Sugiyamaella lignohabitans 30034901 AWJ20_2936 mRNA FRE1 NC_031674.1 2842192 2843106 R AWJ20_2936 complement(<2842192..>2843106) Sugiyamaella lignohabitans 30034902 AWJ20_2937 mRNA FRE5 NC_031674.1 2844620 2845570 R AWJ20_2937 complement(<2844620..>2845570) Sugiyamaella lignohabitans 30034903 AWJ20_2938 mRNA BUD4 NC_031674.1 2847617 2848651 R AWJ20_2938 complement(<2847617..>2848651) Sugiyamaella lignohabitans 30034904 AWJ20_2939 mRNA ACO2 NC_031674.1 2854398 2856521 D AWJ20_2939 <2854398..>2856521 Sugiyamaella lignohabitans 30034905 AWJ20_2940 mRNA CDC25 NC_031674.1 2856633 2860274 R AWJ20_2940 complement(<2856633..>2860274) Sugiyamaella lignohabitans 30034907 AWJ20_2941 mRNA JLP1 NC_031674.1 2862787 2863974 R AWJ20_2941 complement(<2862787..>2863974) Sugiyamaella lignohabitans 30034908 AWJ20_2942 mRNA AWJ20_2942 NC_031674.1 2864351 2865949 R AWJ20_2942 complement(<2864351..>2865949) Sugiyamaella lignohabitans 30034909 AWJ20_2943 mRNA AWJ20_2943 NC_031674.1 2866973 2868979 D AWJ20_2943 <2866973..>2868979 Sugiyamaella lignohabitans 30034910 AWJ20_2944 mRNA SAY1 NC_031674.1 2869014 2870000 R AWJ20_2944 complement(<2869014..>2870000) Sugiyamaella lignohabitans 30034911 AWJ20_2945 mRNA AWJ20_2945 NC_031674.1 2870752 2872350 D AWJ20_2945 <2870752..>2872350 Sugiyamaella lignohabitans 30034912 AWJ20_2946 mRNA PYD3 NC_031674.1 2872577 2873833 D AWJ20_2946 <2872577..>2873833 Sugiyamaella lignohabitans 30034913 AWJ20_2947 mRNA STB5 NC_031674.1 2873856 2875625 R AWJ20_2947 complement(<2873856..>2875625) Sugiyamaella lignohabitans 30034914 AWJ20_2948 mRNA AWJ20_2948 NC_031674.1 2876018 2877655 R AWJ20_2948 complement(<2876018..>2877655) Sugiyamaella lignohabitans 30034915 AWJ20_2949 mRNA AWJ20_2949 NC_031674.1 2878843 2881092 D AWJ20_2949 <2878843..>2881092 Sugiyamaella lignohabitans 30034916 AWJ20_2950 mRNA AWJ20_2950 NC_031674.1 2881200 2882501 R AWJ20_2950 complement(<2881200..>2882501) Sugiyamaella lignohabitans 30034918 AWJ20_2951 mRNA CDC37 NC_031674.1 2882902 2884266 D AWJ20_2951 <2882902..>2884266 Sugiyamaella lignohabitans 30034919 AWJ20_2952 mRNA GRS1 NC_031674.1 2884654 2886630 D AWJ20_2952 <2884654..>2886630 Sugiyamaella lignohabitans 30034920 AWJ20_2953 mRNA MUD1 NC_031674.1 2887422 2888021 R AWJ20_2953 complement(<2887422..>2888021) Sugiyamaella lignohabitans 30034921 AWJ20_2954 mRNA HLJ1 NC_031674.1 2888614 2889240 D AWJ20_2954 <2888614..>2889240 Sugiyamaella lignohabitans 30034922 AWJ20_2955 mRNA PTH2 NC_031674.1 2889633 2890028 D AWJ20_2955 <2889633..>2890028 Sugiyamaella lignohabitans 30034923 AWJ20_2956 mRNA AWJ20_2956 NC_031674.1 2890150 2892816 R AWJ20_2956 complement(<2890150..>2892816) Sugiyamaella lignohabitans 30034924 AWJ20_2957 mRNA ERG5 NC_031674.1 2893300 2894577 R AWJ20_2957 complement(<2893300..>2894577) Sugiyamaella lignohabitans 30034925 AWJ20_2958 mRNA ANP1 NC_031674.1 2896996 2898279 R AWJ20_2958 complement(<2896996..>2898279) Sugiyamaella lignohabitans 30034926 AWJ20_2959 mRNA RPN14 NC_031674.1 2899279 2900490 D AWJ20_2959 <2899279..>2900490 Sugiyamaella lignohabitans 30034927 AWJ20_2960 mRNA VMA2 NC_031674.1 2900600 2902530 R AWJ20_2960 complement(join(<2900600..2902116,2902488..>2902530)) Sugiyamaella lignohabitans 30034929 AWJ20_2961 mRNA AWJ20_2961 NC_031674.1 2902932 2904947 R AWJ20_2961 complement(<2902932..>2904947) Sugiyamaella lignohabitans 30034930 AWJ20_2962 mRNA RHB1 NC_031674.1 2905406 2905960 R AWJ20_2962 complement(<2905406..>2905960) Sugiyamaella lignohabitans 30034931 AWJ20_2963 mRNA ACH1 NC_031674.1 2909332 2910897 D AWJ20_2963 <2909332..>2910897 Sugiyamaella lignohabitans 30034932 AWJ20_2964 mRNA AWJ20_2964 NC_031674.1 2910938 2911894 R AWJ20_2964 complement(<2910938..>2911894) Sugiyamaella lignohabitans 30034933 AWJ20_2965 mRNA URK1 NC_031674.1 2913487 2913807 D AWJ20_2965 <2913487..>2913807 Sugiyamaella lignohabitans 30034934 AWJ20_2966 mRNA AWJ20_2966 NC_031674.1 2914388 2915056 D AWJ20_2966 <2914388..>2915056 Sugiyamaella lignohabitans 30034935 AWJ20_2967 mRNA PHO91 NC_031674.1 2915974 2918526 R AWJ20_2967 complement(<2915974..>2918526) Sugiyamaella lignohabitans 30034936 AWJ20_2968 mRNA AWJ20_2968 NC_031674.1 2916221 2916544 D AWJ20_2968 <2916221..>2916544 Sugiyamaella lignohabitans 30034937 AWJ20_2969 mRNA AWJ20_2969 NC_031674.1 2917094 2917462 D AWJ20_2969 <2917094..>2917462 Sugiyamaella lignohabitans 30034938 AWJ20_2970 mRNA TPS3 NC_031674.1 2921315 2924077 D AWJ20_2970 <2921315..>2924077 Sugiyamaella lignohabitans 30034940 AWJ20_2971 mRNA AWJ20_2971 NC_031674.1 2927716 2928543 R AWJ20_2971 complement(<2927716..>2928543) Sugiyamaella lignohabitans 30034941 AWJ20_2972 mRNA TIF11 NC_031674.1 2928940 2929404 D AWJ20_2972 <2928940..>2929404 Sugiyamaella lignohabitans 30034942 AWJ20_2973 mRNA SLX1 NC_031674.1 2934110 2934871 D AWJ20_2973 <2934110..>2934871 Sugiyamaella lignohabitans 30034943 AWJ20_2974 mRNA AWJ20_2974 NC_031674.1 2935023 2936225 R AWJ20_2974 complement(<2935023..>2936225) Sugiyamaella lignohabitans 30034944 AWJ20_2975 mRNA ROT2 NC_031674.1 2937134 2940013 R AWJ20_2975 complement(<2937134..>2940013) Sugiyamaella lignohabitans 30034945 AWJ20_2976 mRNA OPT2 NC_031674.1 2941719 2944265 D AWJ20_2976 <2941719..>2944265 Sugiyamaella lignohabitans 30034946 AWJ20_2977 mRNA TSC10 NC_031674.1 2944698 2945660 D AWJ20_2977 <2944698..>2945660 Sugiyamaella lignohabitans 30034947 AWJ20_2978 mRNA MRPL8 NC_031674.1 2946345 2946968 D AWJ20_2978 <2946345..>2946968 Sugiyamaella lignohabitans 30034948 AWJ20_2979 mRNA TRM732 NC_031674.1 2947568 2951869 D AWJ20_2979 <2947568..>2951869 Sugiyamaella lignohabitans 30034949 AWJ20_2980 mRNA AWJ20_2980 NC_031674.1 2951952 2953331 R AWJ20_2980 complement(<2951952..>2953331) Sugiyamaella lignohabitans 30034951 AWJ20_2981 mRNA DYN1 NC_031674.1 2955281 2956075 R AWJ20_2981 complement(<2955281..>2956075) Sugiyamaella lignohabitans 30034952 AWJ20_2982 mRNA DYN1 NC_031674.1 2956372 2959422 R AWJ20_2982 complement(<2956372..>2959422) Sugiyamaella lignohabitans 30034953 AWJ20_2983 mRNA DYN1 NC_031674.1 2959478 2961640 R AWJ20_2983 complement(<2959478..>2961640) Sugiyamaella lignohabitans 30034954 AWJ20_2984 mRNA DYN1 NC_031674.1 2962595 2966602 R AWJ20_2984 complement(<2962595..>2966602) Sugiyamaella lignohabitans 30034955 AWJ20_2985 mRNA DYN1 NC_031674.1 2966746 2968479 R AWJ20_2985 complement(<2966746..>2968479) Sugiyamaella lignohabitans 30034956 AWJ20_2986 mRNA AWJ20_2986 NC_031674.1 2970246 2971265 R AWJ20_2986 complement(<2970246..>2971265) Sugiyamaella lignohabitans 30034957 AWJ20_2987 mRNA SAF1 NC_031674.1 2972204 2973478 D AWJ20_2987 <2972204..>2973478 Sugiyamaella lignohabitans 30034958 AWJ20_2988 mRNA SEC5 NC_031674.1 2974420 2977425 R AWJ20_2988 complement(<2974420..>2977425) Sugiyamaella lignohabitans 30034959 AWJ20_2989 mRNA PEP3 NC_031674.1 2978780 2981899 D AWJ20_2989 <2978780..>2981899 Sugiyamaella lignohabitans 30034960 AWJ20_2990 mRNA AWJ20_2990 NC_031674.1 2983684 2984886 D AWJ20_2990 <2983684..>2984886 Sugiyamaella lignohabitans 30034962 AWJ20_2991 mRNA AWJ20_2991 NC_031674.1 2985404 2985805 D AWJ20_2991 <2985404..>2985805 Sugiyamaella lignohabitans 30034963 AWJ20_2992 mRNA SEN54 NC_031674.1 2987754 2988950 D AWJ20_2992 <2987754..>2988950 Sugiyamaella lignohabitans 30034964 AWJ20_2993 mRNA BRO1 NC_031674.1 2989023 2991728 R AWJ20_2993 complement(<2989023..>2991728) Sugiyamaella lignohabitans 30034965 AWJ20_2994 mRNA RMD5 NC_031674.1 2992883 2993689 D AWJ20_2994 <2992883..>2993689 Sugiyamaella lignohabitans 30034966 AWJ20_2995 mRNA ELC1 NC_031674.1 2993912 2994277 R AWJ20_2995 complement(<2993912..>2994277) Sugiyamaella lignohabitans 30034967 AWJ20_2996 mRNA VPS16 NC_031674.1 2994461 2997058 D AWJ20_2996 <2994461..>2997058 Sugiyamaella lignohabitans 30034968 AWJ20_2997 mRNA CHL4 NC_031674.1 2997169 2997945 R AWJ20_2997 complement(<2997169..>2997945) Sugiyamaella lignohabitans 30034969 AWJ20_2998 mRNA NOP4 NC_031674.1 2999172 3001187 D AWJ20_2998 <2999172..>3001187 Sugiyamaella lignohabitans 30034970 AWJ20_2999 mRNA TRM44 NC_031674.1 3001322 3003025 R AWJ20_2999 complement(<3001322..>3003025) Sugiyamaella lignohabitans 30034971 AWJ20_3000 mRNA PHO85 NC_031674.1 3003613 3004356 D AWJ20_3000 <3003613..>3004356 Sugiyamaella lignohabitans 30034975 AWJ20_3001 mRNA SEC3 NC_031674.1 3005632 3009741 D AWJ20_3001 <3005632..>3009741 Sugiyamaella lignohabitans 30034976 AWJ20_3002 mRNA SUA7 NC_031674.1 3009932 3010978 R AWJ20_3002 complement(<3009932..>3010978) Sugiyamaella lignohabitans 30034977 AWJ20_3003 mRNA NUG1 NC_031674.1 3011253 3012803 D AWJ20_3003 <3011253..>3012803 Sugiyamaella lignohabitans 30034978 AWJ20_3004 mRNA PDR5 NC_031674.1 3013769 3018226 D AWJ20_3004 <3013769..>3018226 Sugiyamaella lignohabitans 30034979 AWJ20_3005 mRNA SIP3 NC_031674.1 3018285 3021914 R AWJ20_3005 complement(<3018285..>3021914) Sugiyamaella lignohabitans 30034980 AWJ20_3006 mRNA AWJ20_3006 NC_031674.1 3022024 3022455 R AWJ20_3006 complement(<3022024..>3022455) Sugiyamaella lignohabitans 30034981 AWJ20_3007 mRNA AWJ20_3007 NC_031674.1 3023908 3024780 R AWJ20_3007 complement(<3023908..>3024780) Sugiyamaella lignohabitans 30034982 AWJ20_3008 mRNA AWJ20_3008 NC_031674.1 3027716 3032242 D AWJ20_3008 <3027716..>3032242 Sugiyamaella lignohabitans 30034983 AWJ20_3009 mRNA AWJ20_3009 NC_031674.1 3032885 3033985 R AWJ20_3009 complement(<3032885..>3033985) Sugiyamaella lignohabitans 30034984 AWJ20_3010 mRNA AWJ20_3010 NC_031674.1 3034337 3035278 D AWJ20_3010 <3034337..>3035278 Sugiyamaella lignohabitans 30034986 AWJ20_3011 mRNA SPT15 NC_031674.1 3039028 3039306 D AWJ20_3011 <3039028..>3039306 Sugiyamaella lignohabitans 30034987 AWJ20_3012 mRNA SPT15 NC_031674.1 3039447 3039860 D AWJ20_3012 <3039447..>3039860 Sugiyamaella lignohabitans 30034988 AWJ20_3013 mRNA AWJ20_3013 NC_031674.1 3040674 3042521 D AWJ20_3013 <3040674..>3042521 Sugiyamaella lignohabitans 30034989 AWJ20_3014 mRNA AWJ20_3014 NC_031674.1 3043558 3044511 D AWJ20_3014 <3043558..>3044511 Sugiyamaella lignohabitans 30034990 AWJ20_3015 mRNA ADH3 NC_031674.1 3045043 3046092 R AWJ20_3015 complement(<3045043..>3046092) Sugiyamaella lignohabitans 30034991 AWJ20_3016 mRNA AWJ20_3016 NC_031674.1 3048554 3050608 D AWJ20_3016 <3048554..>3050608 Sugiyamaella lignohabitans 30034992 AWJ20_3017 mRNA AWJ20_3017 NC_031674.1 3051772 3053619 D AWJ20_3017 <3051772..>3053619 Sugiyamaella lignohabitans 30034993 AWJ20_3018 mRNA LYS2 NC_031674.1 3053650 3057870 R AWJ20_3018 complement(<3053650..>3057870) Sugiyamaella lignohabitans 30034994 AWJ20_3019 mRNA NOT3 NC_031674.1 3059321 3061285 D AWJ20_3019 <3059321..>3061285 Sugiyamaella lignohabitans 30034995 AWJ20_3020 mRNA TKL1 NC_031674.1 3061550 3063490 R AWJ20_3020 complement(<3061550..>3063490) Sugiyamaella lignohabitans 30034997 AWJ20_3021 mRNA OPY2 NC_031674.1 3065599 3067581 R AWJ20_3021 complement(<3065599..>3067581) Sugiyamaella lignohabitans 30034998 AWJ20_3022 mRNA AWJ20_3022 NC_031674.1 3068662 3069573 D AWJ20_3022 <3068662..>3069573 Sugiyamaella lignohabitans 30034999 AWJ20_3023 mRNA MET18 NC_031674.1 3069671 3072418 R AWJ20_3023 complement(<3069671..>3072418) Sugiyamaella lignohabitans 30035000 AWJ20_3024 mRNA CKA1 NC_031674.1 3073955 3074638 D AWJ20_3024 <3073955..>3074638 Sugiyamaella lignohabitans 30035001 AWJ20_3025 mRNA CTF18 NC_031674.1 3074934 3077090 D AWJ20_3025 <3074934..>3077090 Sugiyamaella lignohabitans 30035002 AWJ20_3026 mRNA ATG27 NC_031674.1 3079115 3080056 D AWJ20_3026 <3079115..>3080056 Sugiyamaella lignohabitans 30035003 AWJ20_3027 mRNA AWJ20_3027 NC_031674.1 3080201 3080536 R AWJ20_3027 complement(<3080201..>3080536) Sugiyamaella lignohabitans 30035004 AWJ20_3028 mRNA ATP12 NC_031674.1 3080818 3081714 D AWJ20_3028 <3080818..>3081714 Sugiyamaella lignohabitans 30035005 AWJ20_3029 mRNA AWJ20_3029 NC_031674.1 3086503 3087237 D AWJ20_3029 <3086503..>3087237 Sugiyamaella lignohabitans 30035006 AWJ20_3030 mRNA TUB2 NC_031674.1 3088365 3089408 D AWJ20_3030 <3088365..>3089408 Sugiyamaella lignohabitans 30035008 AWJ20_3031 mRNA PYC2 NC_031674.1 3089621 3092842 R AWJ20_3031 complement(<3089621..>3092842) Sugiyamaella lignohabitans 30035009 AWJ20_3032 mRNA NAM7 NC_031674.1 3095778 3098963 R AWJ20_3032 complement(<3095778..>3098963) Sugiyamaella lignohabitans 30035010 AWJ20_3033 mRNA AWJ20_3033 NC_031674.1 3099455 3099802 R AWJ20_3033 complement(<3099455..>3099802) Sugiyamaella lignohabitans 30035011 AWJ20_3034 mRNA GAR1 NC_031674.1 3100758 3101381 D AWJ20_3034 <3100758..>3101381 Sugiyamaella lignohabitans 30035012 AWJ20_3035 mRNA AWJ20_3035 NC_031674.1 3101597 3102463 R AWJ20_3035 complement(<3101597..>3102463) Sugiyamaella lignohabitans 30035013 AWJ20_3036 mRNA AWJ20_3036 NC_031674.1 3103323 3104456 R AWJ20_3036 complement(<3103323..>3104456) Sugiyamaella lignohabitans 30035014 AWJ20_3037 mRNA AWJ20_3037 NC_031674.1 3112558 3115179 D AWJ20_3037 <3112558..>3115179 Sugiyamaella lignohabitans 30035015 AWJ20_3038 mRNA EDE1 NC_031674.1 3115778 3120304 D AWJ20_3038 join(<3115778..3115814,3115959..>3120304) Sugiyamaella lignohabitans 30035016 AWJ20_3039 mRNA NNF1 NC_031674.1 3120428 3121849 R AWJ20_3039 complement(<3120428..>3121849) Sugiyamaella lignohabitans 30035017 AWJ20_3040 mRNA SEC17 NC_031674.1 3122807 3123325 D AWJ20_3040 <3122807..>3123325 Sugiyamaella lignohabitans 30035019 AWJ20_3041 mRNA CPA2 NC_031674.1 3123840 3127268 D AWJ20_3041 <3123840..>3127268 Sugiyamaella lignohabitans 30035020 AWJ20_3042 mRNA SPT20 NC_031674.1 3128757 3130418 D AWJ20_3042 <3128757..>3130418 Sugiyamaella lignohabitans 30035021 AWJ20_3043 mRNA AWJ20_3043 NC_031674.1 3131045 3132865 D AWJ20_3043 <3131045..>3132865 Sugiyamaella lignohabitans 30035022 AWJ20_3044 mRNA AHP1 NC_031674.1 3133710 3134279 D AWJ20_3044 <3133710..>3134279 Sugiyamaella lignohabitans 30035023 AWJ20_3045 mRNA AWJ20_3045 NC_031674.1 3134505 3135321 R AWJ20_3045 complement(join(<3134505..3135071,3135130..>3135321)) Sugiyamaella lignohabitans 30035024 AWJ20_3046 mRNA DCP1 NC_031674.1 3135695 3136180 D AWJ20_3046 <3135695..>3136180 Sugiyamaella lignohabitans 30035025 AWJ20_3047 mRNA HEL1 NC_031674.1 3136970 3138547 D AWJ20_3047 <3136970..>3138547 Sugiyamaella lignohabitans 30035026 AWJ20_3048 mRNA ALR2 NC_031674.1 3138828 3140429 R AWJ20_3048 complement(<3138828..>3140429) Sugiyamaella lignohabitans 30035027 AWJ20_3049 mRNA EMW1 NC_031674.1 3142860 3145505 D AWJ20_3049 <3142860..>3145505 Sugiyamaella lignohabitans 30035028 AWJ20_3050 mRNA AWJ20_3050 NC_031674.1 3145596 3146546 R AWJ20_3050 complement(<3145596..>3146546) Sugiyamaella lignohabitans 30035030 AWJ20_3051 mRNA AWJ20_3051 NC_031674.1 3148043 3150580 D AWJ20_3051 <3148043..>3150580 Sugiyamaella lignohabitans 30035031 AWJ20_3052 mRNA AWJ20_3052 NC_031674.1 3150811 3153075 R AWJ20_3052 complement(<3150811..>3153075) Sugiyamaella lignohabitans 30035032 AWJ20_3053 mRNA AWJ20_3053 NC_031674.1 3154441 3154704 D AWJ20_3053 <3154441..>3154704 Sugiyamaella lignohabitans 30035033 AWJ20_3054 mRNA CCH1 NC_031674.1 3155570 3158614 R AWJ20_3054 complement(<3155570..>3158614) Sugiyamaella lignohabitans 30035034 AWJ20_3055 mRNA CCH1 NC_031674.1 3159658 3161730 R AWJ20_3055 complement(<3159658..>3161730) Sugiyamaella lignohabitans 30035035 AWJ20_3056 mRNA AWJ20_3056 NC_031674.1 3162607 3163599 D AWJ20_3056 <3162607..>3163599 Sugiyamaella lignohabitans 30035036 AWJ20_3057 mRNA ADE17 NC_031674.1 3163760 3165541 R AWJ20_3057 complement(<3163760..>3165541) Sugiyamaella lignohabitans 30035037 AWJ20_3058 mRNA RPL15B NC_031674.1 3168412 3169023 R AWJ20_3058 complement(<3168412..>3169023) Sugiyamaella lignohabitans 30035038 AWJ20_3059 mRNA AWJ20_3059 NC_031674.1 3179400 3181037 R AWJ20_3059 complement(<3179400..>3181037) Sugiyamaella lignohabitans 30035039 AWJ20_3060 mRNA AWJ20_3060 NC_031674.1 3183191 3185182 D AWJ20_3060 <3183191..>3185182 Sugiyamaella lignohabitans 30035041 AWJ20_3061 mRNA NIF3 NC_031674.1 3185259 3185930 R AWJ20_3061 complement(<3185259..>3185930) Sugiyamaella lignohabitans 30035042 AWJ20_3062 mRNA TEL2 NC_031674.1 3186900 3189686 R AWJ20_3062 complement(<3186900..>3189686) Sugiyamaella lignohabitans 30035043 AWJ20_3064 mRNA MET17 NC_031674.1 3190831 3192126 D AWJ20_3064 <3190831..>3192126 Sugiyamaella lignohabitans 30035045 AWJ20_3065 mRNA AWJ20_3065 NC_031674.1 3191185 3191523 R AWJ20_3065 complement(<3191185..>3191523) Sugiyamaella lignohabitans 30035046 AWJ20_3066 mRNA BSC6 NC_031674.1 3192294 3193679 R AWJ20_3066 complement(<3192294..>3193679) Sugiyamaella lignohabitans 30035047 AWJ20_3067 mRNA ABP1 NC_031674.1 3195101 3197494 D AWJ20_3067 join(<3195101..3195260,3195471..>3197494) Sugiyamaella lignohabitans 30035048 AWJ20_3068 mRNA AWJ20_3068 NC_031674.1 3197608 3198534 R AWJ20_3068 complement(<3197608..>3198534) Sugiyamaella lignohabitans 30035049 AWJ20_3069 mRNA RPP0 NC_031674.1 3200014 3200952 R AWJ20_3069 complement(<3200014..>3200952) Sugiyamaella lignohabitans 30035050 AWJ20_3070 mRNA AWJ20_3070 NC_031674.1 3200429 3200761 D AWJ20_3070 <3200429..>3200761 Sugiyamaella lignohabitans 30035052 AWJ20_3071 mRNA GFD2 NC_031674.1 3201468 3202871 R AWJ20_3071 complement(<3201468..>3202871) Sugiyamaella lignohabitans 30035053 AWJ20_3072 mRNA CDC28 NC_031674.1 3208497 3209279 D AWJ20_3072 <3208497..>3209279 Sugiyamaella lignohabitans 30035054 AWJ20_3073 mRNA JLP1 NC_031674.1 3210242 3211429 D AWJ20_3073 <3210242..>3211429 Sugiyamaella lignohabitans 30035055 AWJ20_3074 mRNA SKG3 NC_031674.1 3214946 3217912 D AWJ20_3074 <3214946..>3217912 Sugiyamaella lignohabitans 30035056 AWJ20_3075 mRNA RNR2 NC_031674.1 3219157 3220383 D AWJ20_3075 <3219157..>3220383 Sugiyamaella lignohabitans 30035057 AWJ20_3076 mRNA SWI6 NC_031674.1 3220707 3223418 R AWJ20_3076 complement(<3220707..>3223418) Sugiyamaella lignohabitans 30035058 AWJ20_3077 mRNA VTA1 NC_031674.1 3224314 3225455 D AWJ20_3077 join(<3224314..3224428,3224485..>3225455) Sugiyamaella lignohabitans 30035059 AWJ20_3078 mRNA SUI2 NC_031674.1 3229597 3230532 D AWJ20_3078 <3229597..>3230532 Sugiyamaella lignohabitans 30035060 AWJ20_3079 mRNA AWJ20_3079 NC_031674.1 3231101 3233791 D AWJ20_3079 <3231101..>3233791 Sugiyamaella lignohabitans 30035061 AWJ20_3080 mRNA MHO1 NC_031674.1 3234762 3235421 D AWJ20_3080 <3234762..>3235421 Sugiyamaella lignohabitans 30035063 AWJ20_3081 mRNA APL1 NC_031674.1 3236205 3238370 D AWJ20_3081 <3236205..>3238370 Sugiyamaella lignohabitans 30035064 AWJ20_3082 mRNA HRQ1 NC_031674.1 3238452 3241778 R AWJ20_3082 complement(<3238452..>3241778) Sugiyamaella lignohabitans 30035065 AWJ20_3083 mRNA SSK1 NC_031674.1 3241971 3244145 R AWJ20_3083 complement(<3241971..>3244145) Sugiyamaella lignohabitans 30035066 AWJ20_3084 mRNA HMS1 NC_031674.1 3245037 3248081 R AWJ20_3084 complement(<3245037..>3248081) Sugiyamaella lignohabitans 30035067 AWJ20_3085 mRNA UBC4 NC_031674.1 3251457 3251789 D AWJ20_3085 <3251457..>3251789 Sugiyamaella lignohabitans 30035068 AWJ20_3086 mRNA EDE1 NC_031674.1 3253870 3257805 D AWJ20_3086 <3253870..>3257805 Sugiyamaella lignohabitans 30035069 AWJ20_3087 mRNA DIN7 NC_031674.1 3258889 3259284 R AWJ20_3087 complement(<3258889..>3259284) Sugiyamaella lignohabitans 30035070 AWJ20_3088 mRNA SFB3 NC_031674.1 3260052 3262991 D AWJ20_3088 <3260052..>3262991 Sugiyamaella lignohabitans 30035071 AWJ20_3089 mRNA AWJ20_3089 NC_031674.1 3263091 3263573 R AWJ20_3089 complement(<3263091..>3263573) Sugiyamaella lignohabitans 30035072 AWJ20_3090 mRNA HRB1 NC_031674.1 3265851 3267047 D AWJ20_3090 <3265851..>3267047 Sugiyamaella lignohabitans 30035074 AWJ20_3091 mRNA SGF29 NC_031674.1 3267387 3268046 R AWJ20_3091 complement(<3267387..>3268046) Sugiyamaella lignohabitans 30035075 AWJ20_3092 mRNA PGS1 NC_031674.1 3268961 3270814 R AWJ20_3092 complement(<3268961..>3270814) Sugiyamaella lignohabitans 30035076 AWJ20_3093 mRNA MRPS18 NC_031674.1 3272178 3272846 R AWJ20_3093 complement(<3272178..>3272846) Sugiyamaella lignohabitans 30035077 AWJ20_3094 mRNA GPP2 NC_031674.1 3275482 3276231 D AWJ20_3094 <3275482..>3276231 Sugiyamaella lignohabitans 30035078 AWJ20_3095 mRNA CLA4 NC_031674.1 3276710 3278713 R AWJ20_3095 complement(<3276710..>3278713) Sugiyamaella lignohabitans 30035079 AWJ20_3096 mRNA AWJ20_3096 NC_031674.1 3279105 3279605 R AWJ20_3096 complement(<3279105..>3279605) Sugiyamaella lignohabitans 30035080 AWJ20_3097 mRNA MPH1 NC_031674.1 3283330 3286572 R AWJ20_3097 complement(<3283330..>3286572) Sugiyamaella lignohabitans 30035081 AWJ20_3098 mRNA YND1 NC_031674.1 3286772 3288805 R AWJ20_3098 complement(<3286772..>3288805) Sugiyamaella lignohabitans 30035082 AWJ20_3099 mRNA AWJ20_3099 NC_031674.1 3289724 3290842 R AWJ20_3099 complement(<3289724..>3290842) Sugiyamaella lignohabitans 30035083 AWJ20_3100 mRNA SEC10 NC_031674.1 3291903 3294149 D AWJ20_3100 <3291903..>3294149 Sugiyamaella lignohabitans 30035086 AWJ20_3101 mRNA CDC1 NC_031674.1 3294628 3296274 R AWJ20_3101 complement(<3294628..>3296274) Sugiyamaella lignohabitans 30035087 AWJ20_3102 mRNA AWJ20_3102 NC_031674.1 3296714 3297907 D AWJ20_3102 <3296714..>3297907 Sugiyamaella lignohabitans 30035088 AWJ20_3103 mRNA AWJ20_3103 NC_031674.1 3304581 3305003 D AWJ20_3103 <3304581..>3305003 Sugiyamaella lignohabitans 30035089 AWJ20_3104 mRNA PRM10 NC_031674.1 3306410 3308776 D AWJ20_3104 <3306410..>3308776 Sugiyamaella lignohabitans 30035090 AWJ20_3105 mRNA PRM10 NC_031674.1 3309079 3309489 D AWJ20_3105 <3309079..>3309489 Sugiyamaella lignohabitans 30035091 AWJ20_3106 mRNA CHS5 NC_031674.1 3314654 3316306 D AWJ20_3106 <3314654..>3316306 Sugiyamaella lignohabitans 30035092 AWJ20_3107 mRNA VMA7 NC_031674.1 3316621 3316878 R AWJ20_3107 complement(<3316621..>3316878) Sugiyamaella lignohabitans 30035093 AWJ20_3108 mRNA AWJ20_3108 NC_031674.1 3319988 3320845 D AWJ20_3108 <3319988..>3320845 Sugiyamaella lignohabitans 30035094 AWJ20_3109 mRNA STE12 NC_031674.1 3320949 3322760 R AWJ20_3109 complement(<3320949..>3322760) Sugiyamaella lignohabitans 30035095 AWJ20_3110 mRNA AWJ20_3110 NC_031674.1 3328804 3329721 R AWJ20_3110 complement(<3328804..>3329721) Sugiyamaella lignohabitans 30035097 AWJ20_3111 mRNA CHO2 NC_031674.1 3331796 3334729 D AWJ20_3111 <3331796..>3334729 Sugiyamaella lignohabitans 30035098 AWJ20_3112 mRNA MTR3 NC_031674.1 3334866 3335684 R AWJ20_3112 complement(<3334866..>3335684) Sugiyamaella lignohabitans 30035099 AWJ20_3113 mRNA GIT1 NC_031674.1 3336096 3337397 R AWJ20_3113 complement(<3336096..>3337397) Sugiyamaella lignohabitans 30035100 AWJ20_3114 mRNA SPS19 NC_031674.1 3339483 3340235 R AWJ20_3114 complement(<3339483..>3340235) Sugiyamaella lignohabitans 30035101 AWJ20_3115 mRNA GSH2 NC_031674.1 3341977 3343530 R AWJ20_3115 complement(<3341977..>3343530) Sugiyamaella lignohabitans 30035102 AWJ20_3116 mRNA TPO1 NC_031674.1 3343851 3345338 R AWJ20_3116 complement(<3343851..>3345338) Sugiyamaella lignohabitans 30035103 AWJ20_3117 mRNA FLR1 NC_031674.1 3346038 3346853 R AWJ20_3117 complement(<3346038..>3346853) Sugiyamaella lignohabitans 30035104 AWJ20_3118 mRNA FLR1 NC_031674.1 3347006 3347827 R AWJ20_3118 complement(<3347006..>3347827) Sugiyamaella lignohabitans 30035105 AWJ20_3119 mRNA BUD22 NC_031674.1 3349378 3350652 R AWJ20_3119 complement(<3349378..>3350652) Sugiyamaella lignohabitans 30035106 AWJ20_3120 mRNA MRPL28 NC_031674.1 3351004 3351516 R AWJ20_3120 complement(<3351004..>3351516) Sugiyamaella lignohabitans 30035108 AWJ20_3121 mRNA AWJ20_3121 NC_031674.1 3351911 3352774 D AWJ20_3121 <3351911..>3352774 Sugiyamaella lignohabitans 30035109 AWJ20_3122 mRNA RIM1 NC_031674.1 3354883 3355308 R AWJ20_3122 complement(<3354883..>3355308) Sugiyamaella lignohabitans 30035110 AWJ20_3123 mRNA AWJ20_3123 NC_031674.1 3355897 3357357 D AWJ20_3123 <3355897..>3357357 Sugiyamaella lignohabitans 30035111 AWJ20_3124 mRNA MEP2 NC_031674.1 3359355 3360776 D AWJ20_3124 <3359355..>3360776 Sugiyamaella lignohabitans 30035112 AWJ20_3125 mRNA SCJ1 NC_031674.1 3361010 3361819 R AWJ20_3125 complement(<3361010..>3361819) Sugiyamaella lignohabitans 30035113 AWJ20_3126 mRNA AWJ20_3126 NC_031674.1 3362575 3363063 R AWJ20_3126 complement(<3362575..>3363063) Sugiyamaella lignohabitans 30035114 AWJ20_3127 mRNA TIM50 NC_031674.1 3363239 3364786 R AWJ20_3127 complement(<3363239..>3364786) Sugiyamaella lignohabitans 30035115 AWJ20_3128 mRNA SAP1 NC_031674.1 3366192 3368636 D AWJ20_3128 <3366192..>3368636 Sugiyamaella lignohabitans 30035116 AWJ20_3129 mRNA TPA1 NC_031674.1 3368875 3370584 D AWJ20_3129 <3368875..>3370584 Sugiyamaella lignohabitans 30035117 AWJ20_3130 mRNA AWJ20_3130 NC_031674.1 3370697 3371467 R AWJ20_3130 complement(<3370697..>3371467) Sugiyamaella lignohabitans 30035119 AWJ20_3131 mRNA GVP36 NC_031674.1 3372599 3373525 R AWJ20_3131 complement(<3372599..>3373525) Sugiyamaella lignohabitans 30035120 AWJ20_3132 mRNA VAC14 NC_031674.1 3374775 3377348 D AWJ20_3132 <3374775..>3377348 Sugiyamaella lignohabitans 30035121 AWJ20_3133 mRNA CEX1 NC_031674.1 3378654 3380087 D AWJ20_3133 <3378654..>3380087 Sugiyamaella lignohabitans 30035122 AWJ20_3134 mRNA DBP2 NC_031674.1 3381276 3382622 R AWJ20_3134 complement(<3381276..>3382622) Sugiyamaella lignohabitans 30035123 AWJ20_3135 mRNA GCN4 NC_031674.1 3387423 3388325 D AWJ20_3135 <3387423..>3388325 Sugiyamaella lignohabitans 30035124 AWJ20_3136 mRNA AWJ20_3136 NC_031674.1 3388637 3390514 R AWJ20_3136 complement(<3388637..>3390514) Sugiyamaella lignohabitans 30035125 AWJ20_3137 mRNA CYB5 NC_031674.1 3391250 3391531 R AWJ20_3137 complement(<3391250..>3391531) Sugiyamaella lignohabitans 30035126 AWJ20_3138 mRNA CKA2 NC_031674.1 3394792 3395835 D AWJ20_3138 <3394792..>3395835 Sugiyamaella lignohabitans 30035127 AWJ20_3139 mRNA CYR1 NC_031674.1 3396183 3401024 R AWJ20_3139 complement(<3396183..>3401024) Sugiyamaella lignohabitans 30035128 AWJ20_3140 mRNA GRE3 NC_031674.1 3407965 3408936 D AWJ20_3140 <3407965..>3408936 Sugiyamaella lignohabitans 30035130 AWJ20_3141 mRNA NIT3 NC_031674.1 3409312 3410178 D AWJ20_3141 <3409312..>3410178 Sugiyamaella lignohabitans 30035131 AWJ20_3142 mRNA TUB4 NC_031674.1 3412537 3413643 D AWJ20_3142 <3412537..>3413643 Sugiyamaella lignohabitans 30035132 AWJ20_3143 mRNA MEU1 NC_031674.1 3417680 3418835 D AWJ20_3143 join(<3417680..3417713,3417898..>3418835) Sugiyamaella lignohabitans 30035133 AWJ20_3144 mRNA AWJ20_3144 NC_031674.1 3419095 3420333 R AWJ20_3144 complement(<3419095..>3420333) Sugiyamaella lignohabitans 30035134 AWJ20_3145 mRNA NDE2 NC_031674.1 3421218 3422738 D AWJ20_3145 <3421218..>3422738 Sugiyamaella lignohabitans 30035135 AWJ20_3146 mRNA CBR1 NC_031674.1 3423051 3423935 D AWJ20_3146 <3423051..>3423935 Sugiyamaella lignohabitans 30035136 AWJ20_3147 mRNA HOM3 NC_031674.1 3424150 3425658 R AWJ20_3147 complement(<3424150..>3425658) Sugiyamaella lignohabitans 30035137 AWJ20_3148 mRNA PSR2 NC_031674.1 3426609 3428825 D AWJ20_3148 join(<3426609..3426687,3427294..>3428825) Sugiyamaella lignohabitans 30035138 AWJ20_3149 mRNA SOF1 NC_031674.1 3429189 3430370 R AWJ20_3149 complement(<3429189..>3430370) Sugiyamaella lignohabitans 30035139 AWJ20_3150 mRNA KHA1 NC_031674.1 3433694 3436090 R AWJ20_3150 complement(<3433694..>3436090) Sugiyamaella lignohabitans 30035141 AWJ20_3151 mRNA AWJ20_3151 NC_031674.1 3438057 3439733 D AWJ20_3151 <3438057..>3439733 Sugiyamaella lignohabitans 30035142 AWJ20_3152 mRNA AWJ20_3152 NC_031674.1 3439768 3440610 R AWJ20_3152 complement(<3439768..>3440610) Sugiyamaella lignohabitans 30035143 AWJ20_3153 mRNA BRR6 NC_031674.1 3441609 3443024 D AWJ20_3153 <3441609..>3443024 Sugiyamaella lignohabitans 30035144 AWJ20_3154 mRNA ASE1 NC_031674.1 3443393 3445687 D AWJ20_3154 <3443393..>3445687 Sugiyamaella lignohabitans 30035145 AWJ20_3155 mRNA ABZ2 NC_031674.1 3447800 3448816 D AWJ20_3155 <3447800..>3448816 Sugiyamaella lignohabitans 30035146 AWJ20_3156 mRNA SER2 NC_031674.1 3449029 3449967 R AWJ20_3156 complement(<3449029..>3449967) Sugiyamaella lignohabitans 30035147 AWJ20_3157 mRNA AWJ20_3157 NC_031674.1 3450189 3451979 D AWJ20_3157 <3450189..>3451979 Sugiyamaella lignohabitans 30035148 AWJ20_3158 mRNA SSL2 NC_031674.1 3452557 3454806 D AWJ20_3158 <3452557..>3454806 Sugiyamaella lignohabitans 30035149 AWJ20_3159 mRNA AWJ20_3159 NC_031674.1 3456745 3457902 R AWJ20_3159 complement(<3456745..>3457902) Sugiyamaella lignohabitans 30035150 AWJ20_3160 mRNA SPT10 NC_031674.1 3458195 3458863 R AWJ20_3160 complement(<3458195..>3458863) Sugiyamaella lignohabitans 30035152 AWJ20_3161 mRNA NIT2 NC_031674.1 3459468 3459848 D AWJ20_3161 <3459468..>3459848 Sugiyamaella lignohabitans 30035153 AWJ20_3162 mRNA NIT2 NC_031674.1 3460070 3460420 D AWJ20_3162 <3460070..>3460420 Sugiyamaella lignohabitans 30035154 AWJ20_3163 mRNA AWJ20_3163 NC_031674.1 3461688 3462929 D AWJ20_3163 <3461688..>3462929 Sugiyamaella lignohabitans 30035155 AWJ20_3164 mRNA FAB1 NC_031674.1 3463088 3468796 D AWJ20_3164 <3463088..>3468796 Sugiyamaella lignohabitans 30035156 AWJ20_3165 mRNA MSY1 NC_031674.1 3469230 3470612 R AWJ20_3165 complement(<3469230..>3470612) Sugiyamaella lignohabitans 30035157 AWJ20_3166 mRNA AWJ20_3166 NC_031674.1 3471097 3473481 D AWJ20_3166 <3471097..>3473481 Sugiyamaella lignohabitans 30035158 AWJ20_3167 mRNA GCG1 NC_031674.1 3473573 3474217 R AWJ20_3167 complement(<3473573..>3474217) Sugiyamaella lignohabitans 30035159 AWJ20_3168 mRNA RNT1 NC_031674.1 3475009 3476568 D AWJ20_3168 <3475009..>3476568 Sugiyamaella lignohabitans 30035160 AWJ20_3169 mRNA YSA1 NC_031674.1 3476654 3476902 R AWJ20_3169 complement(<3476654..>3476902) Sugiyamaella lignohabitans 30035161 AWJ20_3170 mRNA AWJ20_3170 NC_031674.1 3479484 3479732 D AWJ20_3170 <3479484..>3479732 Sugiyamaella lignohabitans 30035163 AWJ20_3171 mRNA AWJ20_3171 NC_031674.1 3479974 3481266 R AWJ20_3171 complement(<3479974..>3481266) Sugiyamaella lignohabitans 30035164 AWJ20_3172 mRNA DFR1 NC_031674.1 3482231 3482833 D AWJ20_3172 <3482231..>3482833 Sugiyamaella lignohabitans 30035165 AWJ20_3173 mRNA PPS1 NC_031674.1 3483246 3486671 R AWJ20_3173 complement(<3483246..>3486671) Sugiyamaella lignohabitans 30035166 AWJ20_3174 mRNA AWJ20_3174 NC_031674.1 3488096 3489052 R AWJ20_3174 complement(<3488096..>3489052) Sugiyamaella lignohabitans 30035167 AWJ20_3175 mRNA AWJ20_3175 NC_031674.1 3490037 3490363 R AWJ20_3175 complement(<3490037..>3490363) Sugiyamaella lignohabitans 30035168 AWJ20_3176 mRNA CYC3 NC_031674.1 3491077 3492293 R AWJ20_3176 complement(join(<3491077..3492003,3492234..>3492293)) Sugiyamaella lignohabitans 30035169 AWJ20_3177 mRNA DCP2 NC_031674.1 3493522 3493986 D AWJ20_3177 <3493522..>3493986 Sugiyamaella lignohabitans 30035170 AWJ20_3178 mRNA CLN3 NC_031674.1 3503386 3504825 D AWJ20_3178 <3503386..>3504825 Sugiyamaella lignohabitans 30035171 AWJ20_3179 mRNA AWJ20_3179 NC_031674.1 3511381 3512208 D AWJ20_3179 <3511381..>3512208 Sugiyamaella lignohabitans 30035172 AWJ20_3180 mRNA NSG2 NC_031674.1 3513216 3514421 R AWJ20_3180 complement(<3513216..>3514421) Sugiyamaella lignohabitans 30035174 AWJ20_3181 mRNA AWJ20_3181 NC_031674.1 3515367 3517406 R AWJ20_3181 complement(<3515367..>3517406) Sugiyamaella lignohabitans 30035175 AWJ20_3182 mRNA THO2 NC_031674.1 3518374 3521394 R AWJ20_3182 complement(<3518374..>3521394) Sugiyamaella lignohabitans 30035176 AWJ20_3183 mRNA THO2 NC_031674.1 3522048 3524381 R AWJ20_3183 complement(<3522048..>3524381) Sugiyamaella lignohabitans 30035177 AWJ20_3184 mRNA AWJ20_3184 NC_031674.1 3525514 3526662 R AWJ20_3184 complement(<3525514..>3526662) Sugiyamaella lignohabitans 30035178 AWJ20_3185 mRNA ACK1 NC_031674.1 3528696 3532019 D AWJ20_3185 <3528696..>3532019 Sugiyamaella lignohabitans 30035179 AWJ20_3186 mRNA MIT1 NC_031674.1 3533103 3535172 R AWJ20_3186 complement(<3533103..>3535172) Sugiyamaella lignohabitans 30035180 AWJ20_3187 mRNA AWJ20_3187 NC_031674.1 3543436 3545394 D AWJ20_3187 <3543436..>3545394 Sugiyamaella lignohabitans 30035181 AWJ20_3188 mRNA SAT4 NC_031674.1 3548269 3550014 D AWJ20_3188 <3548269..>3550014 Sugiyamaella lignohabitans 30035182 AWJ20_3189 mRNA TPK2 NC_031674.1 3550561 3552222 R AWJ20_3189 complement(<3550561..>3552222) Sugiyamaella lignohabitans 30035183 AWJ20_3190 mRNA AWJ20_3190 NC_031674.1 3554220 3555143 R AWJ20_3190 complement(<3554220..>3555143) Sugiyamaella lignohabitans 30035185 AWJ20_3191 mRNA AWJ20_3191 NC_031674.1 3561422 3562117 D AWJ20_3191 <3561422..>3562117 Sugiyamaella lignohabitans 30035186 AWJ20_3192 mRNA COG8 NC_031674.1 3562267 3563559 R AWJ20_3192 complement(<3562267..>3563559) Sugiyamaella lignohabitans 30035187 AWJ20_3193 mRNA AWJ20_3193 NC_031674.1 3567513 3568946 R AWJ20_3193 complement(<3567513..>3568946) Sugiyamaella lignohabitans 30035188 AWJ20_3194 mRNA VMA6 NC_031674.1 3572479 3573252 D AWJ20_3194 <3572479..>3573252 Sugiyamaella lignohabitans 30035189 AWJ20_3195 mRNA UBP13 NC_031674.1 3573549 3575966 R AWJ20_3195 complement(<3573549..>3575966) Sugiyamaella lignohabitans 30035190 AWJ20_3196 mRNA SKT5 NC_031674.1 3581437 3583515 D AWJ20_3196 <3581437..>3583515 Sugiyamaella lignohabitans 30035191 AWJ20_3197 mRNA AWJ20_3197 NC_031674.1 3583776 3584261 D AWJ20_3197 <3583776..>3584261 Sugiyamaella lignohabitans 30035192 AWJ20_3198 mRNA SCW11 NC_031674.1 3586674 3587921 D AWJ20_3198 <3586674..>3587921 Sugiyamaella lignohabitans 30035193 AWJ20_3199 mRNA COT1 NC_031674.1 3589312 3590822 D AWJ20_3199 join(<3589312..3589336,3589711..>3590822) Sugiyamaella lignohabitans 30035194 AWJ20_3200 mRNA FUR4 NC_031674.1 3596809 3598050 D AWJ20_3200 <3596809..>3598050 Sugiyamaella lignohabitans 30035197 AWJ20_3201 mRNA AWJ20_3201 NC_031674.1 3599232 3599696 D AWJ20_3201 <3599232..>3599696 Sugiyamaella lignohabitans 30035198 AWJ20_3202 mRNA DUF1 NC_031674.1 3600031 3602238 D AWJ20_3202 <3600031..>3602238 Sugiyamaella lignohabitans 30035199 AWJ20_3203 mRNA RIB7 NC_031674.1 3608521 3609288 R AWJ20_3203 complement(<3608521..>3609288) Sugiyamaella lignohabitans 30035200 AWJ20_3204 mRNA PRE7 NC_031674.1 3609695 3610405 D AWJ20_3204 <3609695..>3610405 Sugiyamaella lignohabitans 30035201 AWJ20_3205 mRNA AWJ20_3205 NC_031674.1 3612246 3613460 R AWJ20_3205 complement(<3612246..>3613460) Sugiyamaella lignohabitans 30035202 AWJ20_3206 mRNA WBP1 NC_031674.1 3614270 3615637 R AWJ20_3206 complement(<3614270..>3615637) Sugiyamaella lignohabitans 30035203 AWJ20_3207 mRNA INP53 NC_031674.1 3616502 3619438 R AWJ20_3207 complement(<3616502..>3619438) Sugiyamaella lignohabitans 30035204 AWJ20_3208 mRNA INP53 NC_031674.1 3619545 3620177 R AWJ20_3208 complement(<3619545..>3620177) Sugiyamaella lignohabitans 30035205 AWJ20_3209 mRNA AWJ20_3209 NC_031674.1 3621507 3622361 D AWJ20_3209 <3621507..>3622361 Sugiyamaella lignohabitans 30035206 AWJ20_3210 mRNA AWJ20_3210 NC_031674.1 3622844 3623701 D AWJ20_3210 <3622844..>3623701 Sugiyamaella lignohabitans 30035208 AWJ20_3211 mRNA GYP7 NC_031674.1 3624649 3626910 D AWJ20_3211 <3624649..>3626910 Sugiyamaella lignohabitans 30035209 AWJ20_3212 mRNA RNR1 NC_031674.1 3632368 3634773 D AWJ20_3212 <3632368..>3634773 Sugiyamaella lignohabitans 30035210 AWJ20_3213 mRNA PTP1 NC_031674.1 3634970 3636352 R AWJ20_3213 complement(<3634970..>3636352) Sugiyamaella lignohabitans 30035211 AWJ20_3214 mRNA BRE4 NC_031674.1 3636781 3640173 R AWJ20_3214 complement(<3636781..>3640173) Sugiyamaella lignohabitans 30035212 AWJ20_3215 mRNA VID27 NC_031674.1 3640974 3643436 R AWJ20_3215 complement(<3640974..>3643436) Sugiyamaella lignohabitans 30035213 AWJ20_3216 mRNA RRG9 NC_031674.1 3643999 3644772 D AWJ20_3216 <3643999..>3644772 Sugiyamaella lignohabitans 30035214 AWJ20_3217 mRNA IES2 NC_031674.1 3645934 3647169 D AWJ20_3217 <3645934..>3647169 Sugiyamaella lignohabitans 30035215 AWJ20_3219 mRNA AWJ20_3219 NC_031674.1 3647881 3650241 D AWJ20_3219 <3647881..>3650241 Sugiyamaella lignohabitans 30035217 AWJ20_3222 mRNA AWJ20_3222 NC_031674.1 3655003 3656094 D AWJ20_3222 <3655003..>3656094 Sugiyamaella lignohabitans 30035221 AWJ20_3223 mRNA AWJ20_3223 NC_031674.1 3656193 3657086 R AWJ20_3223 complement(<3656193..>3657086) Sugiyamaella lignohabitans 30035222 AWJ20_3224 mRNA AWJ20_3224 NC_031674.1 3658297 3658842 D AWJ20_3224 <3658297..>3658842 Sugiyamaella lignohabitans 30035223 AWJ20_3227 mRNA GIT1 NC_031674.1 3665388 3666929 D AWJ20_3227 <3665388..>3666929 Sugiyamaella lignohabitans 30035226 AWJ20_3228 mRNA ENA5 NC_031674.1 3667038 3670274 R AWJ20_3228 complement(<3667038..>3670274) Sugiyamaella lignohabitans 30035227 AWJ20_3229 mRNA YDJ1 NC_031674.1 3671466 3672569 D AWJ20_3229 <3671466..>3672569 Sugiyamaella lignohabitans 30035228 AWJ20_3230 mRNA CBF5 NC_031674.1 3672785 3674236 R AWJ20_3230 complement(<3672785..>3674236) Sugiyamaella lignohabitans 30035230 AWJ20_3231 mRNA STP22 NC_031674.1 3674628 3675935 R AWJ20_3231 complement(<3674628..>3675935) Sugiyamaella lignohabitans 30035231 AWJ20_3232 mRNA ADR1 NC_031674.1 3681197 3683188 D AWJ20_3232 <3681197..>3683188 Sugiyamaella lignohabitans 30035232 AWJ20_3233 mRNA SPS19 NC_031674.1 3683378 3684190 R AWJ20_3233 complement(<3683378..>3684190) Sugiyamaella lignohabitans 30035233 AWJ20_3234 mRNA NEM1 NC_031674.1 3686347 3687354 D AWJ20_3234 <3686347..>3687354 Sugiyamaella lignohabitans 30035234 AWJ20_3235 mRNA KIP1 NC_031674.1 3687449 3690301 R AWJ20_3235 complement(<3687449..>3690301) Sugiyamaella lignohabitans 30035235 AWJ20_3236 mRNA VMA5 NC_031674.1 3692379 3693545 R AWJ20_3236 complement(<3692379..>3693545) Sugiyamaella lignohabitans 30035236 AWJ20_3238 mRNA MCH5 NC_031674.1 3697577 3698941 R AWJ20_3238 complement(<3697577..>3698941) Sugiyamaella lignohabitans 30035238 AWJ20_3240 mRNA DAL81 NC_031674.1 3701020 3703629 D AWJ20_3240 <3701020..>3703629 Sugiyamaella lignohabitans 30035241 AWJ20_3241 mRNA CHA1 NC_031674.1 3703757 3704743 R AWJ20_3241 complement(<3703757..>3704743) Sugiyamaella lignohabitans 30035242 AWJ20_3244 mRNA AWJ20_3244 NC_031674.1 3708355 3709245 R AWJ20_3244 complement(<3708355..>3709245) Sugiyamaella lignohabitans 30035245 AWJ20_3245 mRNA CDC24 NC_031674.1 3711994 3714891 R AWJ20_3245 complement(<3711994..>3714891) Sugiyamaella lignohabitans 30035246 AWJ20_3246 mRNA ERV46 NC_031674.1 3717290 3718477 R AWJ20_3246 complement(<3717290..>3718477) Sugiyamaella lignohabitans 30035247 AWJ20_3247 mRNA AWJ20_3247 NC_031674.1 3718833 3720725 R AWJ20_3247 complement(<3718833..>3720725) Sugiyamaella lignohabitans 30035248 AWJ20_3248 mRNA AWJ20_3248 NC_031674.1 3721095 3722579 D AWJ20_3248 <3721095..>3722579 Sugiyamaella lignohabitans 30035249 AWJ20_3249 mRNA PRC1 NC_031674.1 3723084 3724334 R AWJ20_3249 complement(<3723084..>3724334) Sugiyamaella lignohabitans 30035250 AWJ20_3250 mRNA AWJ20_3250 NC_031674.1 3725427 3727475 D AWJ20_3250 <3725427..>3727475 Sugiyamaella lignohabitans 30035252 AWJ20_3251 mRNA AWJ20_3251 NC_031674.1 3727546 3728964 R AWJ20_3251 complement(<3727546..>3728964) Sugiyamaella lignohabitans 30035253 AWJ20_3252 mRNA NOP58 NC_031674.1 3730067 3731602 R AWJ20_3252 complement(<3730067..>3731602) Sugiyamaella lignohabitans 30035254 AWJ20_3253 mRNA AWJ20_3253 NC_031674.1 3732391 3733734 D AWJ20_3253 <3732391..>3733734 Sugiyamaella lignohabitans 30035255 AWJ20_3254 mRNA AMS1 NC_031674.1 3734112 3737453 D AWJ20_3254 <3734112..>3737453 Sugiyamaella lignohabitans 30035256 AWJ20_3255 mRNA DGK1 NC_031674.1 3738023 3739027 D AWJ20_3255 <3738023..>3739027 Sugiyamaella lignohabitans 30035257 AWJ20_3256 mRNA MTC1 NC_031674.1 3739191 3740561 R AWJ20_3256 complement(<3739191..>3740561) Sugiyamaella lignohabitans 30035258 AWJ20_3257 mRNA RPL20B NC_031674.1 3740999 3741439 R AWJ20_3257 complement(<3740999..>3741439) Sugiyamaella lignohabitans 30035259 AWJ20_3258 mRNA SPS4 NC_031674.1 3742493 3743620 R AWJ20_3258 complement(<3742493..>3743620) Sugiyamaella lignohabitans 30035260 AWJ20_3259 mRNA HXT5 NC_031674.1 3746592 3748229 D AWJ20_3259 <3746592..>3748229 Sugiyamaella lignohabitans 30035261 AWJ20_3260 mRNA SPS19 NC_031674.1 3749329 3750072 R AWJ20_3260 complement(<3749329..>3750072) Sugiyamaella lignohabitans 30035263 AWJ20_3261 mRNA RPO21 NC_031674.1 3750695 3755716 R AWJ20_3261 complement(<3750695..>3755716) Sugiyamaella lignohabitans 30035264 AWJ20_3262 mRNA VBA5 NC_031674.1 3757576 3759360 R AWJ20_3262 complement(<3757576..>3759360) Sugiyamaella lignohabitans 30035265 AWJ20_3263 mRNA SMT3 NC_031674.1 3761595 3762059 R AWJ20_3263 complement(<3761595..>3762059) Sugiyamaella lignohabitans 30035266 AWJ20_3264 mRNA PSP1 NC_031674.1 3765801 3768386 D AWJ20_3264 <3765801..>3768386 Sugiyamaella lignohabitans 30035267 AWJ20_3265 mRNA AWJ20_3265 NC_031674.1 3772183 3772548 R AWJ20_3265 complement(<3772183..>3772548) Sugiyamaella lignohabitans 30035268 AWJ20_3266 mRNA CIT1 NC_031674.1 3773704 3774897 R AWJ20_3266 complement(<3773704..>3774897) Sugiyamaella lignohabitans 30035269 AWJ20_3267 mRNA PNS1 NC_031674.1 3776709 3778352 D AWJ20_3267 <3776709..>3778352 Sugiyamaella lignohabitans 30035270 AWJ20_3268 mRNA SET5 NC_031674.1 3778486 3779724 R AWJ20_3268 complement(<3778486..>3779724) Sugiyamaella lignohabitans 30035271 AWJ20_3269 mRNA FMP10 NC_031674.1 3780060 3780746 D AWJ20_3269 <3780060..>3780746 Sugiyamaella lignohabitans 30035272 AWJ20_3270 mRNA MTR10 NC_031674.1 3780794 3783541 R AWJ20_3270 complement(<3780794..>3783541) Sugiyamaella lignohabitans 30035274 AWJ20_3271 mRNA FAU1 NC_031674.1 3784793 3785149 R AWJ20_3271 complement(<3784793..>3785149) Sugiyamaella lignohabitans 30035275 AWJ20_3272 mRNA BAT2 NC_031674.1 3786026 3787243 D AWJ20_3272 <3786026..>3787243 Sugiyamaella lignohabitans 30035276 AWJ20_3273 mRNA AWJ20_3273 NC_031674.1 3787361 3789622 R AWJ20_3273 complement(<3787361..>3789622) Sugiyamaella lignohabitans 30035277 AWJ20_3274 mRNA HYM1 NC_031674.1 3792951 3793610 D AWJ20_3274 <3792951..>3793610 Sugiyamaella lignohabitans 30035278 AWJ20_3275 mRNA VPS36 NC_031674.1 3793772 3794938 R AWJ20_3275 complement(<3793772..>3794938) Sugiyamaella lignohabitans 30035279 AWJ20_3276 mRNA PET123 NC_031674.1 3795846 3796742 D AWJ20_3276 <3795846..>3796742 Sugiyamaella lignohabitans 30035280 AWJ20_3277 mRNA MUS81 NC_031674.1 3796990 3798735 R AWJ20_3277 complement(<3796990..>3798735) Sugiyamaella lignohabitans 30035281 AWJ20_3278 mRNA AWJ20_3278 NC_031674.1 3799800 3802406 D AWJ20_3278 <3799800..>3802406 Sugiyamaella lignohabitans 30035282 AWJ20_3279 mRNA PXA2 NC_031674.1 3802563 3804221 R AWJ20_3279 complement(<3802563..>3804221) Sugiyamaella lignohabitans 30035283 AWJ20_3280 mRNA CCP1 NC_031674.1 3805182 3806450 R AWJ20_3280 complement(<3805182..>3806450) Sugiyamaella lignohabitans 30035285 AWJ20_3281 mRNA YAK1 NC_031674.1 3807159 3810446 R AWJ20_3281 complement(<3807159..>3810446) Sugiyamaella lignohabitans 30035286 AWJ20_3282 mRNA EAP1 NC_031674.1 3812506 3820308 R AWJ20_3282 complement(<3812506..>3820308) Sugiyamaella lignohabitans 30035287 AWJ20_3283 mRNA PEX28 NC_031674.1 3822046 3823131 R AWJ20_3283 complement(<3822046..>3823131) Sugiyamaella lignohabitans 30035288 AWJ20_3284 mRNA ERV41 NC_031674.1 3825015 3825821 D AWJ20_3284 <3825015..>3825821 Sugiyamaella lignohabitans 30035289 AWJ20_3285 mRNA AWJ20_3285 NC_031674.1 3826010 3827938 R AWJ20_3285 complement(<3826010..>3827938) Sugiyamaella lignohabitans 30035290 AWJ20_3286 mRNA PTH1 NC_031674.1 3828987 3829406 D AWJ20_3286 <3828987..>3829406 Sugiyamaella lignohabitans 30035291 AWJ20_3287 mRNA AWJ20_3287 NC_031674.1 3830574 3830981 R AWJ20_3287 complement(<3830574..>3830981) Sugiyamaella lignohabitans 30035292 AWJ20_3288 mRNA AWJ20_3288 NC_031674.1 3834624 3835100 R AWJ20_3288 complement(<3834624..>3835100) Sugiyamaella lignohabitans 30035293 AWJ20_3290 mRNA ERG7 NC_031674.1 3836571 3838691 R AWJ20_3290 complement(<3836571..>3838691) Sugiyamaella lignohabitans 30035296 AWJ20_3291 mRNA AWJ20_3291 NC_031674.1 3838856 3840220 R AWJ20_3291 complement(<3838856..>3840220) Sugiyamaella lignohabitans 30035297 AWJ20_3292 mRNA STL1 NC_031674.1 3841410 3842375 R AWJ20_3292 complement(<3841410..>3842375) Sugiyamaella lignohabitans 30035298 AWJ20_3293 mRNA AWJ20_3293 NC_031674.1 3843988 3844968 D AWJ20_3293 <3843988..>3844968 Sugiyamaella lignohabitans 30035299 AWJ20_3294 mRNA GRE2 NC_031674.1 3845010 3845753 R AWJ20_3294 complement(<3845010..>3845753) Sugiyamaella lignohabitans 30035300 AWJ20_3295 mRNA AWJ20_3295 NC_031674.1 3846818 3847921 D AWJ20_3295 <3846818..>3847921 Sugiyamaella lignohabitans 30035301 AWJ20_3296 mRNA AWJ20_3296 NC_031674.1 3847985 3849676 R AWJ20_3296 complement(<3847985..>3849676) Sugiyamaella lignohabitans 30035302 AWJ20_3297 mRNA FBP1 NC_031674.1 3851807 3852835 D AWJ20_3297 <3851807..>3852835 Sugiyamaella lignohabitans 30035303 AWJ20_3298 mRNA MCH1 NC_031674.1 3853342 3854583 D AWJ20_3298 <3853342..>3854583 Sugiyamaella lignohabitans 30035304 AWJ20_3299 mRNA RRP3 NC_031674.1 3854755 3856290 R AWJ20_3299 complement(<3854755..>3856290) Sugiyamaella lignohabitans 30035305 AWJ20_3300 mRNA SSF2 NC_031674.1 3856760 3857896 D AWJ20_3300 <3856760..>3857896 Sugiyamaella lignohabitans 30035308 AWJ20_3301 mRNA PIB1 NC_031674.1 3858494 3859228 D AWJ20_3301 <3858494..>3859228 Sugiyamaella lignohabitans 30035309 AWJ20_3302 mRNA AWJ20_3302 NC_031674.1 3860656 3862815 D AWJ20_3302 <3860656..>3862815 Sugiyamaella lignohabitans 30035310 AWJ20_3303 mRNA PSA1 NC_031674.1 3863668 3864759 R AWJ20_3303 complement(<3863668..>3864759) Sugiyamaella lignohabitans 30035311 AWJ20_3304 mRNA GCD11 NC_031674.1 3868570 3870183 R AWJ20_3304 complement(<3868570..>3870183) Sugiyamaella lignohabitans 30035312 AWJ20_3305 mRNA LEU3 NC_031674.1 3870580 3873195 R AWJ20_3305 complement(<3870580..>3873195) Sugiyamaella lignohabitans 30035313 AWJ20_3306 mRNA AWJ20_3306 NC_031674.1 3873697 3875067 D AWJ20_3306 <3873697..>3875067 Sugiyamaella lignohabitans 30035314 AWJ20_3307 mRNA POP4 NC_031674.1 3877117 3877932 R AWJ20_3307 complement(<3877117..>3877932) Sugiyamaella lignohabitans 30035315 AWJ20_3308 mRNA AIM22 NC_031674.1 3878407 3879282 D AWJ20_3308 <3878407..>3879282 Sugiyamaella lignohabitans 30035316 AWJ20_3309 mRNA EFM2 NC_031674.1 3879416 3880345 R AWJ20_3309 complement(<3879416..>3880345) Sugiyamaella lignohabitans 30035317 AWJ20_3310 mRNA YAT1 NC_031674.1 3880610 3882349 R AWJ20_3310 complement(<3880610..>3882349) Sugiyamaella lignohabitans 30035319 AWJ20_3311 mRNA EHD3 NC_031674.1 3884501 3885373 R AWJ20_3311 complement(<3884501..>3885373) Sugiyamaella lignohabitans 30035320 AWJ20_3312 mRNA RPS5 NC_031674.1 3885976 3886644 D AWJ20_3312 <3885976..>3886644 Sugiyamaella lignohabitans 30035321 AWJ20_3313 mRNA ALY2 NC_031674.1 3887896 3890520 R AWJ20_3313 complement(<3887896..>3890520) Sugiyamaella lignohabitans 30035322 AWJ20_3314 mRNA AWJ20_3314 NC_031674.1 3892647 3893411 D AWJ20_3314 <3892647..>3893411 Sugiyamaella lignohabitans 30035323 AWJ20_3315 mRNA MET13 NC_031674.1 3893752 3895533 R AWJ20_3315 complement(<3893752..>3895533) Sugiyamaella lignohabitans 30035324 AWJ20_3316 mRNA AWJ20_3316 NC_031674.1 3896473 3898455 R AWJ20_3316 complement(<3896473..>3898455) Sugiyamaella lignohabitans 30035325 AWJ20_3317 mRNA AWJ20_3317 NC_031674.1 3901159 3902388 D AWJ20_3317 <3901159..>3902388 Sugiyamaella lignohabitans 30035326 AWJ20_3318 mRNA ITC1 NC_031674.1 3904982 3908659 R AWJ20_3318 complement(<3904982..>3908659) Sugiyamaella lignohabitans 30035327 AWJ20_3319 mRNA BMS1 NC_031674.1 3910614 3913898 D AWJ20_3319 <3910614..>3913898 Sugiyamaella lignohabitans 30035328 AWJ20_3320 mRNA VPH1 NC_031674.1 3913976 3915856 R AWJ20_3320 complement(<3913976..>3915856) Sugiyamaella lignohabitans 30035330 AWJ20_3322 mRNA STB6 NC_031674.1 3918053 3920914 D AWJ20_3322 <3918053..>3920914 Sugiyamaella lignohabitans 30035332 AWJ20_3323 mRNA SPT10 NC_031674.1 3920967 3923399 R AWJ20_3323 complement(<3920967..>3923399) Sugiyamaella lignohabitans 30035333 AWJ20_3324 mRNA NDC80 NC_031674.1 3924286 3926571 R AWJ20_3324 complement(<3924286..>3926571) Sugiyamaella lignohabitans 30035334 AWJ20_3325 mRNA PAN6 NC_031674.1 3927177 3928142 D AWJ20_3325 <3927177..>3928142 Sugiyamaella lignohabitans 30035335 AWJ20_3326 mRNA PRP16 NC_031674.1 3928229 3931675 R AWJ20_3326 complement(<3928229..>3931675) Sugiyamaella lignohabitans 30035336 AWJ20_3327 mRNA MRPL20 NC_031674.1 3931878 3932465 D AWJ20_3327 <3931878..>3932465 Sugiyamaella lignohabitans 30035337 AWJ20_3328 mRNA AWJ20_3328 NC_031674.1 3932624 3933298 R AWJ20_3328 complement(<3932624..>3933298) Sugiyamaella lignohabitans 30035338 AWJ20_3329 mRNA HBS1 NC_031674.1 3934513 3936177 D AWJ20_3329 <3934513..>3936177 Sugiyamaella lignohabitans 30035339 AWJ20_3330 mRNA AWJ20_3330 NC_031674.1 3936267 3937238 R AWJ20_3330 complement(<3936267..>3937238) Sugiyamaella lignohabitans 30035341 AWJ20_3331 mRNA AWJ20_3331 NC_031674.1 3937405 3939222 D AWJ20_3331 <3937405..>3939222 Sugiyamaella lignohabitans 30035342 AWJ20_3332 mRNA PEX19 NC_031674.1 3940846 3941886 R AWJ20_3332 complement(<3940846..>3941886) Sugiyamaella lignohabitans 30035343 AWJ20_3333 mRNA TPO2 NC_031674.1 3943652 3945385 R AWJ20_3333 complement(<3943652..>3945385) Sugiyamaella lignohabitans 30035344 AWJ20_3334 mRNA AWJ20_3334 NC_031674.1 3944475 3944738 D AWJ20_3334 <3944475..>3944738 Sugiyamaella lignohabitans 30035345 AWJ20_3335 mRNA MRPS5 NC_031674.1 3947194 3948147 R AWJ20_3335 complement(<3947194..>3948147) Sugiyamaella lignohabitans 30035346 AWJ20_3336 mRNA AWJ20_3336 NC_031674.1 3949331 3950044 R AWJ20_3336 complement(<3949331..>3950044) Sugiyamaella lignohabitans 30035347 AWJ20_3337 mRNA TFA2 NC_031674.1 3950622 3951482 R AWJ20_3337 complement(<3950622..>3951482) Sugiyamaella lignohabitans 30035348 AWJ20_3338 mRNA YBT1 NC_031674.1 3954789 3958928 D AWJ20_3338 <3954789..>3958928 Sugiyamaella lignohabitans 30035349 AWJ20_3339 mRNA IRR1 NC_031674.1 3959043 3962012 R AWJ20_3339 complement(<3959043..>3962012) Sugiyamaella lignohabitans 30035350 AWJ20_3340 mRNA RNA14 NC_031674.1 3963941 3966637 R AWJ20_3340 complement(<3963941..>3966637) Sugiyamaella lignohabitans 30035352 AWJ20_3341 mRNA SAM37 NC_031674.1 3966820 3967728 D AWJ20_3341 <3966820..>3967728 Sugiyamaella lignohabitans 30035353 AWJ20_3342 mRNA AWJ20_3342 NC_031674.1 3967873 3968268 R AWJ20_3342 complement(<3967873..>3968268) Sugiyamaella lignohabitans 30035354 AWJ20_3343 mRNA AWJ20_3343 NC_031674.1 3968634 3969506 D AWJ20_3343 <3968634..>3969506 Sugiyamaella lignohabitans 30035355 AWJ20_3344 mRNA ECM4 NC_031674.1 3969819 3971052 R AWJ20_3344 complement(join(<3969819..3970680,3971021..>3971052)) Sugiyamaella lignohabitans 30035356 AWJ20_3345 mRNA IRE1 NC_031674.1 3972319 3976383 D AWJ20_3345 <3972319..>3976383 Sugiyamaella lignohabitans 30035357 AWJ20_3346 mRNA AWJ20_3346 NC_031674.1 3976909 3977910 D AWJ20_3346 <3976909..>3977910 Sugiyamaella lignohabitans 30035358 AWJ20_3347 mRNA ERD1 NC_031674.1 3979032 3980273 D AWJ20_3347 <3979032..>3980273 Sugiyamaella lignohabitans 30035359 AWJ20_3348 mRNA AWJ20_3348 NC_031674.1 3980463 3980969 R AWJ20_3348 complement(<3980463..>3980969) Sugiyamaella lignohabitans 30035360 AWJ20_3349 mRNA AWJ20_3349 NC_031674.1 3981572 3981781 D AWJ20_3349 <3981572..>3981781 Sugiyamaella lignohabitans 30035361 AWJ20_3350 mRNA BCY1 NC_031674.1 3982874 3984289 D AWJ20_3350 <3982874..>3984289 Sugiyamaella lignohabitans 30035363 AWJ20_3351 mRNA IRC5 NC_031674.1 3985047 3987563 R AWJ20_3351 complement(<3985047..>3987563) Sugiyamaella lignohabitans 30035364 AWJ20_3352 mRNA RSC8 NC_031674.1 3988352 3990244 D AWJ20_3352 <3988352..>3990244 Sugiyamaella lignohabitans 30035365 AWJ20_3353 mRNA WSC4 NC_031674.1 3990927 3992063 R AWJ20_3353 complement(<3990927..>3992063) Sugiyamaella lignohabitans 30035366 AWJ20_3354 mRNA YKE4 NC_031674.1 3996459 3997298 R AWJ20_3354 complement(<3996459..>3997298) Sugiyamaella lignohabitans 30035367 AWJ20_3355 mRNA AWJ20_3355 NC_031674.1 3998284 3999324 D AWJ20_3355 <3998284..>3999324 Sugiyamaella lignohabitans 30035368 AWJ20_3356 mRNA POX1 NC_031674.1 3999360 4001438 R AWJ20_3356 complement(<3999360..>4001438) Sugiyamaella lignohabitans 30035369 AWJ20_3358 mRNA REI1 NC_031674.1 4003379 4004800 R AWJ20_3358 complement(<4003379..>4004800) Sugiyamaella lignohabitans 30035371 AWJ20_3359 mRNA TSR1 NC_031674.1 4006410 4008761 D AWJ20_3359 <4006410..>4008761 Sugiyamaella lignohabitans 30035372 AWJ20_3360 mRNA SSY5 NC_031674.1 4009244 4011886 D AWJ20_3360 <4009244..>4011886 Sugiyamaella lignohabitans 30035374 AWJ20_3361 mRNA RRP6 NC_031674.1 4011988 4014420 R AWJ20_3361 complement(<4011988..>4014420) Sugiyamaella lignohabitans 30035375 AWJ20_3362 mRNA ENV7 NC_031674.1 4016191 4017507 D AWJ20_3362 <4016191..>4017507 Sugiyamaella lignohabitans 30035376 AWJ20_3363 mRNA AWJ20_3363 NC_031674.1 4018432 4019055 D AWJ20_3363 <4018432..>4019055 Sugiyamaella lignohabitans 30035377 AWJ20_3364 mRNA COP1 NC_031674.1 4020126 4021988 D AWJ20_3364 <4020126..>4021988 Sugiyamaella lignohabitans 30035378 AWJ20_3365 mRNA SUI3 NC_031674.1 4022186 4023201 R AWJ20_3365 complement(join(<4022186..4023007,4023073..>4023201)) Sugiyamaella lignohabitans 30035379 AWJ20_3366 mRNA AWJ20_3366 NC_031674.1 4024721 4024939 R AWJ20_3366 complement(<4024721..>4024939) Sugiyamaella lignohabitans 30035380 AWJ20_3367 mRNA AWJ20_3367 NC_031674.1 4026151 4026432 D AWJ20_3367 <4026151..>4026432 Sugiyamaella lignohabitans 30035381 AWJ20_3368 mRNA AWJ20_3368 NC_031674.1 4026500 4027408 D AWJ20_3368 <4026500..>4027408 Sugiyamaella lignohabitans 30035382 AWJ20_3369 mRNA CYB2 NC_031674.1 4027602 4028729 R AWJ20_3369 complement(<4027602..>4028729) Sugiyamaella lignohabitans 30035383 AWJ20_3370 mRNA AWJ20_3370 NC_031674.1 4029421 4030272 D AWJ20_3370 <4029421..>4030272 Sugiyamaella lignohabitans 30035385 AWJ20_3371 mRNA ARO80 NC_031674.1 4030466 4032688 R AWJ20_3371 complement(<4030466..>4032688) Sugiyamaella lignohabitans 30035386 AWJ20_3372 mRNA SPS19 NC_031674.1 4033172 4033957 D AWJ20_3372 <4033172..>4033957 Sugiyamaella lignohabitans 30035387 AWJ20_3373 mRNA MIG1 NC_031674.1 4036333 4038132 D AWJ20_3373 <4036333..>4038132 Sugiyamaella lignohabitans 30035388 AWJ20_3374 mRNA AWJ20_3374 NC_031674.1 4038281 4039243 R AWJ20_3374 complement(<4038281..>4039243) Sugiyamaella lignohabitans 30035389 AWJ20_3376 mRNA AWJ20_3376 NC_031674.1 4047839 4048327 D AWJ20_3376 <4047839..>4048327 Sugiyamaella lignohabitans 30035391 AWJ20_3377 mRNA UBP3 NC_031674.1 4049125 4052553 R AWJ20_3377 complement(join(<4049125..4050993,4052308..>4052553)) Sugiyamaella lignohabitans 30035392 AWJ20_3378 mRNA SPT16 NC_031674.1 4052760 4055282 R AWJ20_3378 complement(<4052760..>4055282) Sugiyamaella lignohabitans 30035393 AWJ20_3379 mRNA YPT32 NC_031674.1 4057270 4057647 D AWJ20_3379 <4057270..>4057647 Sugiyamaella lignohabitans 30035394 AWJ20_3380 mRNA AWJ20_3380 NC_031674.1 4057996 4058571 R AWJ20_3380 complement(<4057996..>4058571) Sugiyamaella lignohabitans 30035396 AWJ20_3381 mRNA smb1 NC_031674.1 4059259 4059588 D AWJ20_3381 <4059259..>4059588 Sugiyamaella lignohabitans 30035397 AWJ20_3382 mRNA AWJ20_3382 NC_031674.1 4059876 4061984 R AWJ20_3382 complement(<4059876..>4061984) Sugiyamaella lignohabitans 30035398 AWJ20_3383 mRNA TIS11 NC_031674.1 4065235 4067091 D AWJ20_3383 <4065235..>4067091 Sugiyamaella lignohabitans 30035399 AWJ20_3387 mRNA GCN1 NC_031674.1 4076714 4084198 D AWJ20_3387 <4076714..>4084198 Sugiyamaella lignohabitans 30035403 AWJ20_3388 mRNA SOK2 NC_031674.1 4084372 4086198 R AWJ20_3388 complement(<4084372..>4086198) Sugiyamaella lignohabitans 30035404 AWJ20_3389 mRNA AWJ20_3389 NC_031674.1 4089904 4091730 D AWJ20_3389 <4089904..>4091730 Sugiyamaella lignohabitans 30035405 AWJ20_3390 mRNA ARO2 NC_031674.1 4091936 4093069 R AWJ20_3390 complement(<4091936..>4093069) Sugiyamaella lignohabitans 30035407 AWJ20_3391 mRNA SRP102 NC_031674.1 4093453 4094316 D AWJ20_3391 <4093453..>4094316 Sugiyamaella lignohabitans 30035408 AWJ20_3392 mRNA AWJ20_3392 NC_031674.1 4094613 4095239 R AWJ20_3392 complement(<4094613..>4095239) Sugiyamaella lignohabitans 30035409 AWJ20_3393 mRNA EIS1 NC_031674.1 4098560 4102066 D AWJ20_3393 join(<4098560..4098582,4098706..>4102066) Sugiyamaella lignohabitans 30035410 AWJ20_3394 mRNA SFK1 NC_031674.1 4102262 4103125 R AWJ20_3394 complement(<4102262..>4103125) Sugiyamaella lignohabitans 30035411 AWJ20_3395 mRNA STB4 NC_031674.1 4104474 4107092 D AWJ20_3395 <4104474..>4107092 Sugiyamaella lignohabitans 30035412 AWJ20_3396 mRNA YIP4 NC_031674.1 4107259 4108029 R AWJ20_3396 complement(<4107259..>4108029) Sugiyamaella lignohabitans 30035413 AWJ20_3397 mRNA SAK1 NC_031674.1 4108454 4112077 R AWJ20_3397 complement(<4108454..>4112077) Sugiyamaella lignohabitans 30035414 AWJ20_3398 mRNA CTS2 NC_031674.1 4113015 4114526 D AWJ20_3398 <4113015..>4114526 Sugiyamaella lignohabitans 30035415 AWJ20_3399 mRNA PHO81 NC_031674.1 4120820 4123666 D AWJ20_3399 <4120820..>4123666 Sugiyamaella lignohabitans 30035416 AWJ20_3400 mRNA IMP3 NC_031674.1 4123884 4124441 R AWJ20_3400 complement(<4123884..>4124441) Sugiyamaella lignohabitans 30035419 AWJ20_3401 mRNA MRPL6 NC_031674.1 4124743 4125492 D AWJ20_3401 <4124743..>4125492 Sugiyamaella lignohabitans 30035420 AWJ20_3402 mRNA COA1 NC_031674.1 4125690 4126337 R AWJ20_3402 complement(<4125690..>4126337) Sugiyamaella lignohabitans 30035421 AWJ20_3403 mRNA MRPL9 NC_031674.1 4126538 4127431 D AWJ20_3403 <4126538..>4127431 Sugiyamaella lignohabitans 30035422 AWJ20_3404 mRNA CRM1 NC_031674.1 4127655 4130603 R AWJ20_3404 complement(<4127655..>4130603) Sugiyamaella lignohabitans 30035423 AWJ20_3405 mRNA AWJ20_3405 NC_031674.1 4131444 4133462 R AWJ20_3405 complement(<4131444..>4133462) Sugiyamaella lignohabitans 30035424 AWJ20_3406 mRNA AWJ20_3406 NC_031674.1 4135775 4137619 D AWJ20_3406 <4135775..>4137619 Sugiyamaella lignohabitans 30035425 AWJ20_3407 mRNA OMA1 NC_031674.1 4137825 4138901 D AWJ20_3407 <4137825..>4138901 Sugiyamaella lignohabitans 30035426 AWJ20_3408 mRNA RTS2 NC_031674.1 4139093 4139905 D AWJ20_3408 <4139093..>4139905 Sugiyamaella lignohabitans 30035427 AWJ20_3409 mRNA TGL4 NC_031674.1 4140873 4143464 D AWJ20_3409 <4140873..>4143464 Sugiyamaella lignohabitans 30035428 AWJ20_3410 mRNA AWJ20_3410 NC_031674.1 4145125 4146534 D AWJ20_3410 join(<4145125..4145183,4145287..4145293,4145563..>4146534) Sugiyamaella lignohabitans 30035430 AWJ20_3411 mRNA SER33 NC_031674.1 4147283 4148701 D AWJ20_3411 <4147283..>4148701 Sugiyamaella lignohabitans 30035431 AWJ20_3412 mRNA RPN2 NC_031674.1 4150879 4153812 D AWJ20_3412 <4150879..>4153812 Sugiyamaella lignohabitans 30035432 AWJ20_3413 mRNA UTP7 NC_031674.1 4153968 4155536 R AWJ20_3413 complement(<4153968..>4155536) Sugiyamaella lignohabitans 30035433 AWJ20_3414 mRNA PXL1 NC_031674.1 4155821 4157344 R AWJ20_3414 complement(<4155821..>4157344) Sugiyamaella lignohabitans 30035434 AWJ20_3415 mRNA AWJ20_3415 NC_031674.1 4159690 4161015 D AWJ20_3415 <4159690..>4161015 Sugiyamaella lignohabitans 30035435 AWJ20_3416 mRNA TVP38 NC_031674.1 4161133 4161621 R AWJ20_3416 complement(<4161133..>4161621) Sugiyamaella lignohabitans 30035436 AWJ20_3417 mRNA SPS19 NC_031674.1 4164617 4165459 D AWJ20_3417 <4164617..>4165459 Sugiyamaella lignohabitans 30035437 AWJ20_3418 mRNA AWJ20_3418 NC_031674.1 4166117 4166437 D AWJ20_3418 <4166117..>4166437 Sugiyamaella lignohabitans 30035438 AWJ20_3419 mRNA TDH1 NC_031674.1 4167242 4168300 D AWJ20_3419 <4167242..>4168300 Sugiyamaella lignohabitans 30035439 AWJ20_3420 mRNA AWJ20_3420 NC_031674.1 4167460 4167765 R AWJ20_3420 complement(<4167460..>4167765) Sugiyamaella lignohabitans 30035441 AWJ20_3421 mRNA AWJ20_3421 NC_031674.1 4170930 4173104 R AWJ20_3421 complement(<4170930..>4173104) Sugiyamaella lignohabitans 30035442 AWJ20_3422 mRNA AWJ20_3422 NC_031674.1 4175914 4177395 D AWJ20_3422 <4175914..>4177395 Sugiyamaella lignohabitans 30035443 AWJ20_3423 mRNA AWJ20_3423 NC_031674.1 4178792 4181428 D AWJ20_3423 <4178792..>4181428 Sugiyamaella lignohabitans 30035444 AWJ20_3424 mRNA AWJ20_3424 NC_031674.1 4182736 4183659 D AWJ20_3424 <4182736..>4183659 Sugiyamaella lignohabitans 30035445 AWJ20_3425 mRNA DRN1 NC_031674.1 4184166 4185410 D AWJ20_3425 <4184166..>4185410 Sugiyamaella lignohabitans 30035446 AWJ20_3426 mRNA GCN4 NC_031674.1 4186772 4187533 D AWJ20_3426 <4186772..>4187533 Sugiyamaella lignohabitans 30035447 AWJ20_3427 mRNA FRE2 NC_031674.1 4189698 4190918 D AWJ20_3427 <4189698..>4190918 Sugiyamaella lignohabitans 30035448 AWJ20_3428 mRNA NMD3 NC_031674.1 4190986 4192602 R AWJ20_3428 complement(<4190986..>4192602) Sugiyamaella lignohabitans 30035449 AWJ20_3429 mRNA CDC39 NC_031674.1 4194196 4200171 D AWJ20_3429 <4194196..>4200171 Sugiyamaella lignohabitans 30035450 AWJ20_3430 mRNA AWJ20_3430 NC_031674.1 4201238 4204306 D AWJ20_3430 <4201238..>4204306 Sugiyamaella lignohabitans 30035452 AWJ20_3431 mRNA AWJ20_3431 NC_031674.1 4204405 4205937 R AWJ20_3431 complement(<4204405..>4205937) Sugiyamaella lignohabitans 30035453 AWJ20_3432 mRNA GCD14 NC_031674.1 4206344 4207510 R AWJ20_3432 complement(<4206344..>4207510) Sugiyamaella lignohabitans 30035454 AWJ20_3433 mRNA UTP8 NC_031674.1 4207946 4210264 D AWJ20_3433 <4207946..>4210264 Sugiyamaella lignohabitans 30035455 AWJ20_3434 mRNA AWJ20_3434 NC_031674.1 4210390 4211703 R AWJ20_3434 complement(<4210390..>4211703) Sugiyamaella lignohabitans 30035456 AWJ20_3435 mRNA EFB1 NC_031674.1 4212610 4213743 D AWJ20_3435 join(<4212610..4212640,4212778..4212849,4213259..>4213743) Sugiyamaella lignohabitans 30035457 AWJ20_3436 mRNA NOP12 NC_031674.1 4213986 4215398 D AWJ20_3436 <4213986..>4215398 Sugiyamaella lignohabitans 30035458 AWJ20_3437 mRNA AWJ20_3437 NC_031674.1 4216554 4217330 D AWJ20_3437 <4216554..>4217330 Sugiyamaella lignohabitans 30035459 AWJ20_3438 mRNA LAP3 NC_031674.1 4217822 4219327 D AWJ20_3438 <4217822..>4219327 Sugiyamaella lignohabitans 30035460 AWJ20_3439 mRNA AWJ20_3439 NC_031674.1 4219732 4220595 D AWJ20_3439 <4219732..>4220595 Sugiyamaella lignohabitans 30035461 AWJ20_3440 mRNA OXP1 NC_031674.1 4220682 4224455 R AWJ20_3440 complement(<4220682..>4224455) Sugiyamaella lignohabitans 30035463 AWJ20_3441 mRNA AWJ20_3441 NC_031674.1 4225163 4226383 R AWJ20_3441 complement(<4225163..>4226383) Sugiyamaella lignohabitans 30035464 AWJ20_3442 mRNA RSA4 NC_031674.1 4227023 4228255 R AWJ20_3442 complement(<4227023..>4228255) Sugiyamaella lignohabitans 30035465 AWJ20_3443 mRNA CET1 NC_031674.1 4228896 4230626 D AWJ20_3443 <4228896..>4230626 Sugiyamaella lignohabitans 30035466 AWJ20_3444 mRNA DAK2 NC_031674.1 4230778 4232595 R AWJ20_3444 complement(<4230778..>4232595) Sugiyamaella lignohabitans 30035467 AWJ20_3445 mRNA AZF1 NC_031674.1 4235032 4237530 R AWJ20_3445 complement(<4235032..>4237530) Sugiyamaella lignohabitans 30035468 AWJ20_3446 mRNA TUP1 NC_031674.1 4239519 4241219 R AWJ20_3446 complement(<4239519..>4241219) Sugiyamaella lignohabitans 30035469 AWJ20_3447 mRNA AWJ20_3447 NC_031674.1 4242985 4244184 R AWJ20_3447 complement(<4242985..>4244184) Sugiyamaella lignohabitans 30035470 AWJ20_3448 mRNA MIT1 NC_031674.1 4245247 4247199 R AWJ20_3448 complement(<4245247..>4247199) Sugiyamaella lignohabitans 30035471 AWJ20_3449 mRNA EPS1 NC_031674.1 4252164 4254206 R AWJ20_3449 complement(<4252164..>4254206) Sugiyamaella lignohabitans 30035472 AWJ20_3450 mRNA DOA1 NC_031674.1 4256502 4258790 D AWJ20_3450 <4256502..>4258790 Sugiyamaella lignohabitans 30035474 AWJ20_3451 mRNA SGTA NC_031674.1 4259060 4259659 D AWJ20_3451 <4259060..>4259659 Sugiyamaella lignohabitans 30035475 AWJ20_3452 mRNA AWJ20_3452 NC_031674.1 4259788 4261332 R AWJ20_3452 complement(<4259788..>4261332) Sugiyamaella lignohabitans 30035476 AWJ20_3453 mRNA SUR2 NC_031674.1 4261865 4262779 R AWJ20_3453 complement(<4261865..>4262779) Sugiyamaella lignohabitans 30035477 AWJ20_3454 mRNA MHR1 NC_031674.1 4263842 4264516 D AWJ20_3454 <4263842..>4264516 Sugiyamaella lignohabitans 30035478 AWJ20_3455 mRNA STT3 NC_031674.1 4264713 4267001 R AWJ20_3455 complement(<4264713..>4267001) Sugiyamaella lignohabitans 30035479 AWJ20_3456 mRNA AWJ20_3456 NC_031674.1 4268702 4270354 R AWJ20_3456 complement(<4268702..>4270354) Sugiyamaella lignohabitans 30035480 AWJ20_3457 mRNA AWJ20_3457 NC_031674.1 4273736 4275046 D AWJ20_3457 <4273736..>4275046 Sugiyamaella lignohabitans 30035481 AWJ20_3458 mRNA MRP1 NC_031674.1 4275453 4276376 D AWJ20_3458 <4275453..>4276376 Sugiyamaella lignohabitans 30035482 AWJ20_3459 mRNA BRL1 NC_031674.1 4276675 4277733 R AWJ20_3459 complement(<4276675..>4277733) Sugiyamaella lignohabitans 30035483 AWJ20_3460 mRNA APE3 NC_031674.1 4278231 4279790 R AWJ20_3460 complement(<4278231..>4279790) Sugiyamaella lignohabitans 30035485 AWJ20_3461 mRNA ETT1 NC_031674.1 4280267 4281550 R AWJ20_3461 complement(<4280267..>4281550) Sugiyamaella lignohabitans 30035486 AWJ20_3462 mRNA MET1 NC_031674.1 4282069 4283556 D AWJ20_3462 <4282069..>4283556 Sugiyamaella lignohabitans 30035487 AWJ20_3463 mRNA AWJ20_3463 NC_031674.1 4283955 4285034 D AWJ20_3463 <4283955..>4285034 Sugiyamaella lignohabitans 30035488 AWJ20_3464 mRNA TMC1 NC_031674.1 4285339 4287662 R AWJ20_3464 complement(join(<4285339..4285695,4286129..4286151,4287659..>4287662)) Sugiyamaella lignohabitans 30035489 AWJ20_3465 mRNA SDS24 NC_031674.1 4289001 4290455 D AWJ20_3465 <4289001..>4290455 Sugiyamaella lignohabitans 30035490 AWJ20_3466 mRNA JEM1 NC_031674.1 4290889 4292499 D AWJ20_3466 <4290889..>4292499 Sugiyamaella lignohabitans 30035491 AWJ20_3467 mRNA PIB2 NC_031674.1 4295359 4297095 D AWJ20_3467 <4295359..>4297095 Sugiyamaella lignohabitans 30035492 AWJ20_3468 mRNA IPI1 NC_031674.1 4297360 4298058 R AWJ20_3468 complement(<4297360..>4298058) Sugiyamaella lignohabitans 30035493 AWJ20_3469 mRNA RQC1 NC_031674.1 4298807 4300642 D AWJ20_3469 <4298807..>4300642 Sugiyamaella lignohabitans 30035494 AWJ20_3470 mRNA CYS3 NC_031674.1 4301375 4302577 D AWJ20_3470 <4301375..>4302577 Sugiyamaella lignohabitans 30035496 AWJ20_3471 mRNA AWJ20_3471 NC_031674.1 4302835 4303587 R AWJ20_3471 complement(<4302835..>4303587) Sugiyamaella lignohabitans 30035497 AWJ20_3472 mRNA SIL1 NC_031674.1 4305240 4306496 R AWJ20_3472 complement(<4305240..>4306496) Sugiyamaella lignohabitans 30035498 AWJ20_3473 mRNA OPI10 NC_031674.1 4307538 4307984 R AWJ20_3473 complement(<4307538..>4307984) Sugiyamaella lignohabitans 30035499 AWJ20_3474 mRNA ERP3 NC_031674.1 4308760 4309383 D AWJ20_3474 <4308760..>4309383 Sugiyamaella lignohabitans 30035500 AWJ20_3475 mRNA SWI3 NC_031674.1 4309538 4312180 R AWJ20_3475 complement(<4309538..>4312180) Sugiyamaella lignohabitans 30035501 AWJ20_3476 mRNA AWJ20_3476 NC_031674.1 4315434 4315853 D AWJ20_3476 <4315434..>4315853 Sugiyamaella lignohabitans 30035502 AWJ20_3477 mRNA NNK1 NC_031674.1 4316056 4318830 R AWJ20_3477 complement(<4316056..>4318830) Sugiyamaella lignohabitans 30035503 AWJ20_3478 mRNA BUD14 NC_031674.1 4321972 4325091 D AWJ20_3478 <4321972..>4325091 Sugiyamaella lignohabitans 30035504 AWJ20_3479 mRNA KAP104 NC_031674.1 4325981 4328752 D AWJ20_3479 <4325981..>4328752 Sugiyamaella lignohabitans 30035505 AWJ20_3480 mRNA RPL9B NC_031674.1 4331081 4331650 R AWJ20_3480 complement(<4331081..>4331650) Sugiyamaella lignohabitans 30035507 AWJ20_3481 mRNA PMT2 NC_031674.1 4333083 4335317 D AWJ20_3481 <4333083..>4335317 Sugiyamaella lignohabitans 30035508 AWJ20_3482 mRNA AWJ20_3482 NC_031674.1 4335459 4337474 R AWJ20_3482 complement(<4335459..>4337474) Sugiyamaella lignohabitans 30035509 AWJ20_3483 mRNA ELP2 NC_031674.1 4337968 4340217 R AWJ20_3483 complement(<4337968..>4340217) Sugiyamaella lignohabitans 30035510 AWJ20_3484 mRNA ILV3 NC_031674.1 4340495 4342285 R AWJ20_3484 complement(<4340495..>4342285) Sugiyamaella lignohabitans 30035511 AWJ20_3485 mRNA AWJ20_3485 NC_031674.1 4340640 4341221 D AWJ20_3485 <4340640..>4341221 Sugiyamaella lignohabitans 30035512 AWJ20_3486 mRNA SYM1 NC_031674.1 4343326 4343952 R AWJ20_3486 complement(<4343326..>4343952) Sugiyamaella lignohabitans 30035513 AWJ20_3487 mRNA PIL1 NC_031674.1 4347090 4348013 D AWJ20_3487 <4347090..>4348013 Sugiyamaella lignohabitans 30035514 AWJ20_3488 mRNA HAT1 NC_031674.1 4348932 4350227 R AWJ20_3488 complement(<4348932..>4350227) Sugiyamaella lignohabitans 30035515 AWJ20_3489 mRNA AWJ20_3489 NC_031674.1 4350993 4355345 R AWJ20_3489 complement(<4350993..>4355345) Sugiyamaella lignohabitans 30035516 AWJ20_3490 mRNA DOC1 NC_031674.1 4356996 4359699 D AWJ20_3490 join(<4356996..4357681,4358616..>4359699) Sugiyamaella lignohabitans 30035518 AWJ20_3491 mRNA KTR1 NC_031674.1 4364136 4365350 D AWJ20_3491 <4364136..>4365350 Sugiyamaella lignohabitans 30035519 AWJ20_3492 mRNA AWJ20_3492 NC_031674.1 4366317 4367039 R AWJ20_3492 complement(<4366317..>4367039) Sugiyamaella lignohabitans 30035520 AWJ20_3493 mRNA AWJ20_3493 NC_031674.1 4367249 4368664 R AWJ20_3493 complement(<4367249..>4368664) Sugiyamaella lignohabitans 30035521 AWJ20_3494 mRNA AWJ20_3494 NC_031674.1 4368931 4369710 R AWJ20_3494 complement(<4368931..>4369710) Sugiyamaella lignohabitans 30035522 AWJ20_3495 mRNA ARG1 NC_031674.1 4370939 4372180 D AWJ20_3495 <4370939..>4372180 Sugiyamaella lignohabitans 30035523 AWJ20_3496 mRNA SSP120 NC_031674.1 4372414 4373055 D AWJ20_3496 <4372414..>4373055 Sugiyamaella lignohabitans 30035524 AWJ20_3497 mRNA SPC105 NC_031674.1 4373230 4376118 R AWJ20_3497 complement(<4373230..>4376118) Sugiyamaella lignohabitans 30035525 AWJ20_3498 mRNA FRE2 NC_031674.1 4376989 4379232 R AWJ20_3498 complement(<4376989..>4379232) Sugiyamaella lignohabitans 30035526 AWJ20_3499 mRNA SUR1 NC_031674.1 4383385 4384404 D AWJ20_3499 <4383385..>4384404 Sugiyamaella lignohabitans 30035527 AWJ20_3500 mRNA MES1 NC_031674.1 4384734 4387070 D AWJ20_3500 <4384734..>4387070 Sugiyamaella lignohabitans 30035530 AWJ20_3501 mRNA CEF1 NC_031674.1 4387214 4389370 R AWJ20_3501 complement(<4387214..>4389370) Sugiyamaella lignohabitans 30035531 AWJ20_3502 mRNA HRK1 NC_031674.1 4390880 4393507 D AWJ20_3502 <4390880..>4393507 Sugiyamaella lignohabitans 30035532 AWJ20_3503 mRNA PRS5 NC_031674.1 4393676 4394962 R AWJ20_3503 complement(<4393676..>4394962) Sugiyamaella lignohabitans 30035533 AWJ20_3504 mRNA AWJ20_3504 NC_031674.1 4398735 4400138 R AWJ20_3504 complement(<4398735..>4400138) Sugiyamaella lignohabitans 30035534 AWJ20_3505 mRNA ATP16 NC_031674.1 4406911 4407216 R AWJ20_3505 complement(<4406911..>4407216) Sugiyamaella lignohabitans 30035535 AWJ20_3506 mRNA PTC1 NC_031674.1 4409196 4410800 R AWJ20_3506 complement(<4409196..>4410800) Sugiyamaella lignohabitans 30035536 AWJ20_3507 mRNA AWJ20_3507 NC_031674.1 4412616 4413314 D AWJ20_3507 <4412616..>4413314 Sugiyamaella lignohabitans 30035537 AWJ20_3508 mRNA RPT2 NC_031674.1 4413498 4414628 R AWJ20_3508 complement(<4413498..>4414628) Sugiyamaella lignohabitans 30035538 AWJ20_3509 mRNA UBC1 NC_031674.1 4416222 4416497 R AWJ20_3509 complement(<4416222..>4416497) Sugiyamaella lignohabitans 30035539 AWJ20_3510 mRNA PDH1 NC_031674.1 4416793 4418256 R AWJ20_3510 complement(<4416793..>4418256) Sugiyamaella lignohabitans 30035541 AWJ20_3511 mRNA GCY1 NC_031674.1 4422009 4423004 D AWJ20_3511 <4422009..>4423004 Sugiyamaella lignohabitans 30035542 AWJ20_3512 mRNA GRR1 NC_031674.1 4423240 4425150 R AWJ20_3512 complement(<4423240..>4425150) Sugiyamaella lignohabitans 30035543 AWJ20_3513 mRNA AWJ20_3513 NC_031674.1 4427940 4429034 D AWJ20_3513 <4427940..>4429034 Sugiyamaella lignohabitans 30035544 AWJ20_3514 mRNA PBY1 NC_031674.1 4429250 4430491 R AWJ20_3514 complement(<4429250..>4430491) Sugiyamaella lignohabitans 30035545 AWJ20_3515 mRNA PBY1 NC_031674.1 4430700 4431503 R AWJ20_3515 complement(<4430700..>4431503) Sugiyamaella lignohabitans 30035546 AWJ20_3516 mRNA OPT1 NC_031674.1 4432279 4433031 R AWJ20_3516 complement(<4432279..>4433031) Sugiyamaella lignohabitans 30035547 AWJ20_3517 mRNA ERG25 NC_031674.1 4437224 4438108 D AWJ20_3517 <4437224..>4438108 Sugiyamaella lignohabitans 30035548 AWJ20_3518 mRNA AWJ20_3518 NC_031674.1 4438227 4439987 R AWJ20_3518 complement(<4438227..>4439987) Sugiyamaella lignohabitans 30035549 AWJ20_3519 mRNA CDC23 NC_031674.1 4440569 4442047 D AWJ20_3519 <4440569..>4442047 Sugiyamaella lignohabitans 30035550 AWJ20_3520 mRNA HCS1 NC_031674.1 4442260 4444344 R AWJ20_3520 complement(<4442260..>4444344) Sugiyamaella lignohabitans 30035552 AWJ20_3521 mRNA PRP45 NC_031674.1 4444588 4446216 D AWJ20_3521 <4444588..>4446216 Sugiyamaella lignohabitans 30035553 AWJ20_3522 mRNA POP5 NC_031674.1 4446307 4446816 R AWJ20_3522 complement(<4446307..>4446816) Sugiyamaella lignohabitans 30035554 AWJ20_3523 mRNA TGS1 NC_031674.1 4446976 4447662 D AWJ20_3523 <4446976..>4447662 Sugiyamaella lignohabitans 30035555 AWJ20_3524 mRNA ALA1 NC_031674.1 4447819 4450563 R AWJ20_3524 complement(<4447819..>4450563) Sugiyamaella lignohabitans 30035556 AWJ20_3525 mRNA ATP2 NC_031674.1 4451403 4452650 R AWJ20_3525 complement(<4451403..>4452650) Sugiyamaella lignohabitans 30035557 AWJ20_3526 mRNA AWJ20_3526 NC_031674.1 4454626 4457226 D AWJ20_3526 <4454626..>4457226 Sugiyamaella lignohabitans 30035558 AWJ20_3527 mRNA IQG1 NC_031674.1 4457329 4461366 R AWJ20_3527 complement(<4457329..>4461366) Sugiyamaella lignohabitans 30035559 AWJ20_3528 mRNA AWJ20_3528 NC_031674.1 4461628 4462194 R AWJ20_3528 complement(<4461628..>4462194) Sugiyamaella lignohabitans 30035560 AWJ20_3529 mRNA NSL1 NC_031674.1 4463162 4463809 D AWJ20_3529 <4463162..>4463809 Sugiyamaella lignohabitans 30035561 AWJ20_3530 mRNA PHO88 NC_031674.1 4464174 4464737 R AWJ20_3530 complement(<4464174..>4464737) Sugiyamaella lignohabitans 30035563 AWJ20_3531 mRNA RNH201 NC_031674.1 4465267 4466259 R AWJ20_3531 complement(<4465267..>4466259) Sugiyamaella lignohabitans 30035564 AWJ20_3532 mRNA KRS1 NC_031674.1 4466447 4467799 R AWJ20_3532 complement(<4466447..>4467799) Sugiyamaella lignohabitans 30035565 AWJ20_3533 mRNA AWJ20_3533 NC_031674.1 4468590 4470851 R AWJ20_3533 complement(<4468590..>4470851) Sugiyamaella lignohabitans 30035566 AWJ20_3534 mRNA AWJ20_3534 NC_031674.1 4472893 4473435 D AWJ20_3534 <4472893..>4473435 Sugiyamaella lignohabitans 30035567 AWJ20_3535 mRNA TUM1 NC_031674.1 4473831 4474346 R AWJ20_3535 complement(<4473831..>4474346) Sugiyamaella lignohabitans 30035568 AWJ20_3536 mRNA TUM1 NC_031674.1 4474440 4474751 R AWJ20_3536 complement(<4474440..>4474751) Sugiyamaella lignohabitans 30035569 AWJ20_3537 mRNA KIP3 NC_031674.1 4475108 4477660 R AWJ20_3537 complement(<4475108..>4477660) Sugiyamaella lignohabitans 30035570 AWJ20_3538 mRNA AWJ20_3538 NC_031674.1 4478713 4479111 D AWJ20_3538 <4478713..>4479111 Sugiyamaella lignohabitans 30035571 AWJ20_3539 mRNA AWJ20_3539 NC_031674.1 4479347 4480228 R AWJ20_3539 complement(<4479347..>4480228) Sugiyamaella lignohabitans 30035572 AWJ20_3540 mRNA AWJ20_3540 NC_031674.1 4483563 4487687 R AWJ20_3540 complement(join(<4483563..4486768,4487549..>4487687)) Sugiyamaella lignohabitans 30035574 AWJ20_3541 mRNA AWJ20_3541 NC_031674.1 4488426 4489052 R AWJ20_3541 complement(<4488426..>4489052) Sugiyamaella lignohabitans 30035575 AWJ20_3542 mRNA PDR16 NC_031674.1 4489948 4491060 D AWJ20_3542 <4489948..>4491060 Sugiyamaella lignohabitans 30035576 AWJ20_3543 mRNA BRR2 NC_031674.1 4491452 4497295 D AWJ20_3543 <4491452..>4497295 Sugiyamaella lignohabitans 30035577 AWJ20_3544 mRNA PDR5 NC_031674.1 4498244 4502704 R AWJ20_3544 complement(<4498244..>4502704) Sugiyamaella lignohabitans 30035578 AWJ20_3545 mRNA AWJ20_3545 NC_031674.1 4508307 4510415 D AWJ20_3545 <4508307..>4510415 Sugiyamaella lignohabitans 30035579 AWJ20_3546 mRNA AWJ20_3546 NC_031674.1 4510574 4511746 R AWJ20_3546 complement(<4510574..>4511746) Sugiyamaella lignohabitans 30035580 AWJ20_3547 mRNA AWJ20_3547 NC_031674.1 4512201 4513796 R AWJ20_3547 complement(<4512201..>4513796) Sugiyamaella lignohabitans 30035581 AWJ20_3548 mRNA STL1 NC_031674.1 4514921 4515529 R AWJ20_3548 complement(<4514921..>4515529) Sugiyamaella lignohabitans 30035582 AWJ20_3549 mRNA GOR1 NC_031674.1 4517012 4518019 D AWJ20_3549 <4517012..>4518019 Sugiyamaella lignohabitans 30035583 AWJ20_3550 mRNA STL1 NC_031674.1 4518113 4518796 R AWJ20_3550 complement(<4518113..>4518796) Sugiyamaella lignohabitans 30035585 AWJ20_3551 mRNA STL1 NC_031674.1 4518845 4519705 R AWJ20_3551 complement(<4518845..>4519705) Sugiyamaella lignohabitans 30035586 AWJ20_3552 mRNA AWJ20_3552 NC_031674.1 4520223 4522304 R AWJ20_3552 complement(<4520223..>4522304) Sugiyamaella lignohabitans 30035587 AWJ20_3553 mRNA AQR1 NC_031674.1 4522807 4524342 R AWJ20_3553 complement(<4522807..>4524342) Sugiyamaella lignohabitans 30035588 AWJ20_3554 mRNA AWJ20_3554 NC_031674.1 4528603 4529868 D AWJ20_3554 <4528603..>4529868 Sugiyamaella lignohabitans 30035589 AWJ20_3555 mRNA FCY2 NC_031674.1 4530742 4532286 R AWJ20_3555 complement(<4530742..>4532286) Sugiyamaella lignohabitans 30035590 AWJ20_3556 mRNA ZRT2 NC_031674.1 4535351 4536499 D AWJ20_3556 <4535351..>4536499 Sugiyamaella lignohabitans 30035591 AWJ20_3557 mRNA MNN11 NC_031674.1 4536684 4537895 R AWJ20_3557 complement(<4536684..>4537895) Sugiyamaella lignohabitans 30035592 AWJ20_3558 mRNA CYC8 NC_031674.1 4539017 4542094 R AWJ20_3558 complement(<4539017..>4542094) Sugiyamaella lignohabitans 30035593 AWJ20_3559 mRNA DHR2 NC_031674.1 4544460 4547015 R AWJ20_3559 complement(<4544460..>4547015) Sugiyamaella lignohabitans 30035594 AWJ20_3560 mRNA RIM9 NC_031674.1 4548419 4550350 D AWJ20_3560 <4548419..>4550350 Sugiyamaella lignohabitans 30035596 AWJ20_3561 mRNA OPT1 NC_031674.1 4550461 4553184 R AWJ20_3561 complement(<4550461..>4553184) Sugiyamaella lignohabitans 30035597 AWJ20_3562 mRNA ATO2 NC_031674.1 4555419 4556243 R AWJ20_3562 complement(<4555419..>4556243) Sugiyamaella lignohabitans 30035598 AWJ20_3563 mRNA ATO2 NC_031674.1 4558442 4559263 R AWJ20_3563 complement(<4558442..>4559263) Sugiyamaella lignohabitans 30035599 AWJ20_3564 mRNA CDC10 NC_031674.1 4561506 4562636 R AWJ20_3564 complement(<4561506..>4562636) Sugiyamaella lignohabitans 30035600 AWJ20_3565 mRNA MRPL32 NC_031674.1 4563754 4564305 D AWJ20_3565 <4563754..>4564305 Sugiyamaella lignohabitans 30035601 AWJ20_3566 mRNA AWJ20_3566 NC_031674.1 4564619 4566085 D AWJ20_3566 <4564619..>4566085 Sugiyamaella lignohabitans 30035602 AWJ20_3567 mRNA PST2 NC_031674.1 4566335 4567198 R AWJ20_3567 complement(<4566335..>4567198) Sugiyamaella lignohabitans 30035603 AWJ20_3568 mRNA YCP4 NC_031674.1 4570195 4570806 D AWJ20_3568 <4570195..>4570806 Sugiyamaella lignohabitans 30035604 AWJ20_3569 mRNA AWJ20_3569 NC_031674.1 4570366 4570728 R AWJ20_3569 complement(<4570366..>4570728) Sugiyamaella lignohabitans 30035605 AWJ20_3570 mRNA PDR12 NC_031674.1 4571658 4572620 D AWJ20_3570 <4571658..>4572620 Sugiyamaella lignohabitans 30035607 AWJ20_3571 mRNA SNQ2 NC_031674.1 4572761 4576261 D AWJ20_3571 <4572761..>4576261 Sugiyamaella lignohabitans 30035608 AWJ20_3572 mRNA TLG2 NC_031674.1 4579117 4580211 R AWJ20_3572 complement(<4579117..>4580211) Sugiyamaella lignohabitans 30035609 AWJ20_3573 mRNA RPA135 NC_031674.1 4580693 4580977 D AWJ20_3573 <4580693..>4580977 Sugiyamaella lignohabitans 30035610 AWJ20_3574 mRNA RPA135 NC_031674.1 4581076 4584246 D AWJ20_3574 <4581076..>4584246 Sugiyamaella lignohabitans 30035611 AWJ20_3575 mRNA AWJ20_3575 NC_031674.1 4586388 4588928 D AWJ20_3575 <4586388..>4588928 Sugiyamaella lignohabitans 30035612 AWJ20_3576 mRNA ORC6 NC_031674.1 4589019 4590059 R AWJ20_3576 complement(<4589019..>4590059) Sugiyamaella lignohabitans 30035613 AWJ20_3577 mRNA PYD3 NC_031674.1 4590979 4592283 D AWJ20_3577 <4590979..>4592283 Sugiyamaella lignohabitans 30035614 AWJ20_3578 mRNA AWJ20_3578 NC_031674.1 4592348 4592872 R AWJ20_3578 complement(<4592348..>4592872) Sugiyamaella lignohabitans 30035615 AWJ20_3579 mRNA ATE1 NC_031674.1 4593411 4594277 D AWJ20_3579 <4593411..>4594277 Sugiyamaella lignohabitans 30035616 AWJ20_3580 mRNA DRE2 NC_031674.1 4594392 4595315 R AWJ20_3580 complement(<4594392..>4595315) Sugiyamaella lignohabitans 30035618 AWJ20_3581 mRNA LRO1 NC_031674.1 4597039 4599096 R AWJ20_3581 complement(<4597039..>4599096) Sugiyamaella lignohabitans 30035619 AWJ20_3582 mRNA AWJ20_3582 NC_031674.1 4599928 4601832 D AWJ20_3582 <4599928..>4601832 Sugiyamaella lignohabitans 30035620 AWJ20_3583 mRNA YAK1 NC_031674.1 4603049 4604659 D AWJ20_3583 <4603049..>4604659 Sugiyamaella lignohabitans 30035621 AWJ20_3584 mRNA YAK1 NC_031674.1 4604760 4606598 D AWJ20_3584 <4604760..>4606598 Sugiyamaella lignohabitans 30035622 AWJ20_3585 mRNA CDC34 NC_031674.1 4607864 4608385 R AWJ20_3585 complement(<4607864..>4608385) Sugiyamaella lignohabitans 30035623 AWJ20_3586 mRNA ANT1 NC_031674.1 4610284 4611288 D AWJ20_3586 <4610284..>4611288 Sugiyamaella lignohabitans 30035624 AWJ20_3587 mRNA OPI1 NC_031674.1 4612463 4613872 R AWJ20_3587 complement(<4612463..>4613872) Sugiyamaella lignohabitans 30035625 AWJ20_3591 mRNA GAL4 NC_031674.1 4618830 4621334 D AWJ20_3591 <4618830..>4621334 Sugiyamaella lignohabitans 30035630 AWJ20_3592 mRNA IZH3 NC_031674.1 4622150 4623589 D AWJ20_3592 <4622150..>4623589 Sugiyamaella lignohabitans 30035631 AWJ20_3593 mRNA ARG82 NC_031674.1 4624320 4625432 D AWJ20_3593 <4624320..>4625432 Sugiyamaella lignohabitans 30035632 AWJ20_3594 mRNA AWJ20_3594 NC_031674.1 4626766 4627401 D AWJ20_3594 <4626766..>4627401 Sugiyamaella lignohabitans 30035633 AWJ20_3595 mRNA STL1 NC_031674.1 4628745 4629530 D AWJ20_3595 <4628745..>4629530 Sugiyamaella lignohabitans 30035634 AWJ20_3596 mRNA AWJ20_3596 NC_031674.1 4630748 4631221 D AWJ20_3596 <4630748..>4631221 Sugiyamaella lignohabitans 30035635 AWJ20_3597 mRNA GLG1 NC_031674.1 4631332 4633173 R AWJ20_3597 complement(<4631332..>4633173) Sugiyamaella lignohabitans 30035636 AWJ20_3599 mRNA HOF1 NC_031674.1 4635271 4637793 R AWJ20_3599 complement(<4635271..>4637793) Sugiyamaella lignohabitans 30035638 AWJ20_3600 mRNA RPL31B NC_031674.1 4639417 4639629 D AWJ20_3600 <4639417..>4639629 Sugiyamaella lignohabitans 30035641 AWJ20_3601 mRNA FBA1 NC_031674.1 4642456 4643172 D AWJ20_3601 <4642456..>4643172 Sugiyamaella lignohabitans 30035642 AWJ20_3603 mRNA TRS130 NC_031674.1 4649075 4652131 D AWJ20_3603 <4649075..>4652131 Sugiyamaella lignohabitans 30035644 AWJ20_3604 mRNA AWJ20_3604 NC_031674.1 4652307 4652888 D AWJ20_3604 <4652307..>4652888 Sugiyamaella lignohabitans 30035645 AWJ20_3605 mRNA HEM4 NC_031674.1 4652931 4653728 R AWJ20_3605 complement(<4652931..>4653728) Sugiyamaella lignohabitans 30035646 AWJ20_3606 mRNA RKM3 NC_031674.1 4654304 4655929 D AWJ20_3606 <4654304..>4655929 Sugiyamaella lignohabitans 30035647 AWJ20_3607 mRNA CTK1 NC_031674.1 4655993 4658302 R AWJ20_3607 complement(<4655993..>4658302) Sugiyamaella lignohabitans 30035648 AWJ20_3608 mRNA GRX5 NC_031674.1 4659484 4659765 D AWJ20_3608 <4659484..>4659765 Sugiyamaella lignohabitans 30035649 AWJ20_3609 mRNA TAD1 NC_031674.1 4659839 4661086 R AWJ20_3609 complement(<4659839..>4661086) Sugiyamaella lignohabitans 30035650 AWJ20_3610 mRNA DIA4 NC_031674.1 4667586 4669049 D AWJ20_3610 <4667586..>4669049 Sugiyamaella lignohabitans 30035652 AWJ20_3611 mRNA TOM1 NC_031674.1 4669788 4676402 D AWJ20_3611 join(<4669788..4669835,4669938..>4676402) Sugiyamaella lignohabitans 30035653 AWJ20_3612 mRNA TOM1 NC_031674.1 4676486 4680991 D AWJ20_3612 join(<4676486..4676831,4676895..>4680991) Sugiyamaella lignohabitans 30035654 AWJ20_3613 mRNA AWJ20_3613 NC_031674.1 4681293 4682201 D AWJ20_3613 <4681293..>4682201 Sugiyamaella lignohabitans 30035655 AWJ20_3614 mRNA IRA2 NC_031674.1 4684850 4692553 D AWJ20_3614 <4684850..>4692553 Sugiyamaella lignohabitans 30035656 AWJ20_3615 mRNA REX4 NC_031674.1 4692751 4693620 R AWJ20_3615 complement(<4692751..>4693620) Sugiyamaella lignohabitans 30035657 AWJ20_3616 mRNA PRP3 NC_031674.1 4693903 4695648 D AWJ20_3616 <4693903..>4695648 Sugiyamaella lignohabitans 30035658 AWJ20_3617 mRNA TAF14 NC_031674.1 4695831 4696427 R AWJ20_3617 complement(<4695831..>4696427) Sugiyamaella lignohabitans 30035659 AWJ20_3618 mRNA NBP35 NC_031674.1 4698677 4699228 R AWJ20_3618 complement(<4698677..>4699228) Sugiyamaella lignohabitans 30035660 AWJ20_3619 mRNA AIM41 NC_031674.1 4699605 4700243 R AWJ20_3619 complement(<4699605..>4700243) Sugiyamaella lignohabitans 30035661 AWJ20_3620 mRNA MSS1 NC_031674.1 4700334 4702049 D AWJ20_3620 <4700334..>4702049 Sugiyamaella lignohabitans 30035663 AWJ20_3621 mRNA AWJ20_3621 NC_031674.1 4702318 4702809 R AWJ20_3621 complement(<4702318..>4702809) Sugiyamaella lignohabitans 30035664 AWJ20_3622 mRNA AWJ20_3622 NC_031674.1 4705174 4708062 R AWJ20_3622 complement(<4705174..>4708062) Sugiyamaella lignohabitans 30035665 AWJ20_3623 mRNA AWJ20_3623 NC_031674.1 4708409 4709716 R AWJ20_3623 complement(<4708409..>4709716) Sugiyamaella lignohabitans 30035666 AWJ20_3624 mRNA AWJ20_3624 NC_031674.1 4710592 4711101 D AWJ20_3624 <4710592..>4711101 Sugiyamaella lignohabitans 30035667 AWJ20_3625 mRNA RAV1 NC_031674.1 4711936 4715598 D AWJ20_3625 <4711936..>4715598 Sugiyamaella lignohabitans 30035668 AWJ20_3626 mRNA AWJ20_3626 NC_031674.1 4715673 4718369 R AWJ20_3626 complement(<4715673..>4718369) Sugiyamaella lignohabitans 30035669 AWJ20_3627 mRNA PRB1 NC_031674.1 4719860 4721458 R AWJ20_3627 complement(<4719860..>4721458) Sugiyamaella lignohabitans 30035670 AWJ20_3628 mRNA BUD7 NC_031674.1 4727356 4729026 R AWJ20_3628 complement(<4727356..>4729026) Sugiyamaella lignohabitans 30035671 AWJ20_3629 mRNA ALG12 NC_031674.1 4730034 4731821 R AWJ20_3629 complement(<4730034..>4731821) Sugiyamaella lignohabitans 30035672 AWJ20_3630 mRNA CPR5 NC_031674.1 4733809 4734453 R AWJ20_3630 complement(<4733809..>4734453) Sugiyamaella lignohabitans 30035674 AWJ20_3631 mRNA TAF9 NC_031674.1 4734829 4735374 D AWJ20_3631 <4734829..>4735374 Sugiyamaella lignohabitans 30035675 AWJ20_3632 mRNA AWJ20_3632 NC_031674.1 4735595 4736779 R AWJ20_3632 complement(<4735595..>4736779) Sugiyamaella lignohabitans 30035676 AWJ20_3633 mRNA VPH2 NC_031674.1 4742009 4742827 D AWJ20_3633 <4742009..>4742827 Sugiyamaella lignohabitans 30035677 AWJ20_3634 mRNA PRC1 NC_031674.1 4744341 4745675 D AWJ20_3634 <4744341..>4745675 Sugiyamaella lignohabitans 30035678 AWJ20_3635 mRNA AWJ20_3635 NC_031674.1 4746515 4747651 D AWJ20_3635 <4746515..>4747651 Sugiyamaella lignohabitans 30035679 AWJ20_3636 mRNA AWJ20_3636 NC_031674.1 4748265 4750790 D AWJ20_3636 <4748265..>4750790 Sugiyamaella lignohabitans 30035680 AWJ20_3637 mRNA RPL13A NC_031674.1 4751154 4752265 D AWJ20_3637 join(<4751154..4751157,4751631..>4752265) Sugiyamaella lignohabitans 30035681 AWJ20_3638 mRNA LCB4 NC_031674.1 4752502 4753650 R AWJ20_3638 complement(<4752502..>4753650) Sugiyamaella lignohabitans 30035682 AWJ20_3640 mRNA HOG1 NC_031674.1 4758502 4759458 D AWJ20_3640 <4758502..>4759458 Sugiyamaella lignohabitans 30035685 AWJ20_3641 mRNA YCF1 NC_031674.1 4759687 4764387 R AWJ20_3641 complement(<4759687..>4764387) Sugiyamaella lignohabitans 30035686 AWJ20_3642 mRNA AWJ20_3642 NC_031674.1 4765663 4767255 R AWJ20_3642 complement(<4765663..>4767255) Sugiyamaella lignohabitans 30035687 AWJ20_3643 mRNA SPT6 NC_031674.1 4768008 4772421 R AWJ20_3643 complement(join(<4768008..4772192,4772245..>4772421)) Sugiyamaella lignohabitans 30035688 AWJ20_3644 mRNA TED1 NC_031674.1 4774445 4775308 D AWJ20_3644 <4774445..>4775308 Sugiyamaella lignohabitans 30035689 AWJ20_3645 mRNA LAT1 NC_031674.1 4776815 4778122 D AWJ20_3645 <4776815..>4778122 Sugiyamaella lignohabitans 30035690 AWJ20_3646 mRNA SEC23 NC_031674.1 4779018 4780847 D AWJ20_3646 <4779018..>4780847 Sugiyamaella lignohabitans 30035691 AWJ20_3647 mRNA CDC3 NC_031674.1 4781302 4782669 D AWJ20_3647 <4781302..>4782669 Sugiyamaella lignohabitans 30035692 AWJ20_3648 mRNA RTT10 NC_031674.1 4783358 4786123 D AWJ20_3648 <4783358..>4786123 Sugiyamaella lignohabitans 30035693 AWJ20_3649 mRNA AWJ20_3649 NC_031674.1 4786195 4787526 R AWJ20_3649 complement(<4786195..>4787526) Sugiyamaella lignohabitans 30035694 AWJ20_3650 mRNA VPS41 NC_031674.1 4787680 4790634 D AWJ20_3650 <4787680..>4790634 Sugiyamaella lignohabitans 30035696 AWJ20_3651 mRNA GAP1 NC_031674.1 4792862 4793179 D AWJ20_3651 <4792862..>4793179 Sugiyamaella lignohabitans 30035697 AWJ20_3652 mRNA GAP1 NC_031674.1 4794090 4794746 D AWJ20_3652 <4794090..>4794746 Sugiyamaella lignohabitans 30035698 AWJ20_3653 mRNA JHD1 NC_031674.1 4794876 4796366 D AWJ20_3653 <4794876..>4796366 Sugiyamaella lignohabitans 30035699 AWJ20_3654 mRNA COP1 NC_031674.1 4796477 4800025 R AWJ20_3654 complement(<4796477..>4800025) Sugiyamaella lignohabitans 30035700 AWJ20_3655 mRNA AWJ20_3655 NC_031674.1 4800925 4802628 D AWJ20_3655 <4800925..>4802628 Sugiyamaella lignohabitans 30035701 AWJ20_3656 mRNA SQS1 NC_031674.1 4802710 4805088 R AWJ20_3656 complement(<4802710..>4805088) Sugiyamaella lignohabitans 30035702 AWJ20_3657 mRNA AWJ20_3657 NC_031674.1 4805883 4806674 R AWJ20_3657 complement(<4805883..>4806674) Sugiyamaella lignohabitans 30035703 AWJ20_3658 mRNA ATG4 NC_031674.1 4807137 4807976 R AWJ20_3658 complement(<4807137..>4807976) Sugiyamaella lignohabitans 30035704 AWJ20_3659 mRNA RRP40 NC_031674.1 4808882 4809583 D AWJ20_3659 <4808882..>4809583 Sugiyamaella lignohabitans 30035705 AWJ20_3660 mRNA FIG4 NC_031674.1 4809715 4811322 R AWJ20_3660 complement(<4809715..>4811322) Sugiyamaella lignohabitans 30035707 AWJ20_3662 mRNA PPM2 NC_031674.1 4813262 4816303 D AWJ20_3662 <4813262..>4816303 Sugiyamaella lignohabitans 30035708 AWJ20_3663 mRNA RTT103 NC_031674.1 4816408 4817628 R AWJ20_3663 complement(join(<4816408..4817387,4817481..>4817628)) Sugiyamaella lignohabitans 30035709 AWJ20_3664 mRNA clc1 NC_031674.1 4817897 4818154 D AWJ20_3664 <4817897..>4818154 Sugiyamaella lignohabitans 30035710 AWJ20_3665 mRNA AWJ20_3665 NC_031674.1 4821254 4823065 D AWJ20_3665 <4821254..>4823065 Sugiyamaella lignohabitans 30035711 AWJ20_3666 mRNA RUD3 NC_031674.1 4823779 4825542 R AWJ20_3666 complement(<4823779..>4825542) Sugiyamaella lignohabitans 30035712 AWJ20_3667 mRNA RFC1 NC_031674.1 4826110 4828845 D AWJ20_3667 join(<4826110..4826150,4826214..>4828845) Sugiyamaella lignohabitans 30035713 AWJ20_3668 mRNA AWJ20_3668 NC_031674.1 4829035 4829409 R AWJ20_3668 complement(<4829035..>4829409) Sugiyamaella lignohabitans 30035714 AWJ20_3669 mRNA STO1 NC_031674.1 4829503 4832043 D AWJ20_3669 <4829503..>4832043 Sugiyamaella lignohabitans 30035715 AWJ20_3670 mRNA TRP3 NC_031674.1 4833546 4835018 R AWJ20_3670 complement(<4833546..>4835018) Sugiyamaella lignohabitans 30035717 AWJ20_3671 mRNA AWJ20_3671 NC_031674.1 4836648 4839020 R AWJ20_3671 complement(<4836648..>4839020) Sugiyamaella lignohabitans 30035718 AWJ20_3672 mRNA ALG5 NC_031674.1 4841207 4841977 D AWJ20_3672 <4841207..>4841977 Sugiyamaella lignohabitans 30035719 AWJ20_3673 mRNA SAC1 NC_031674.1 4842201 4844057 R AWJ20_3673 complement(<4842201..>4844057) Sugiyamaella lignohabitans 30035720 AWJ20_3674 mRNA MRC1 NC_031674.1 4844257 4847597 R AWJ20_3674 complement(join(<4844257..4846839,4846905..>4847597)) Sugiyamaella lignohabitans 30035721 AWJ20_3675 mRNA GUD1 NC_031674.1 4849170 4850045 D AWJ20_3675 <4849170..>4850045 Sugiyamaella lignohabitans 30035722 AWJ20_3676 mRNA GND2 NC_031674.1 4850716 4852146 R AWJ20_3676 complement(<4850716..>4852146) Sugiyamaella lignohabitans 30035723 AWJ20_3677 mRNA CFD1 NC_031674.1 4855423 4856241 D AWJ20_3677 <4855423..>4856241 Sugiyamaella lignohabitans 30035724 AWJ20_3678 mRNA AWJ20_3678 NC_031674.1 4856463 4858028 R AWJ20_3678 complement(<4856463..>4858028) Sugiyamaella lignohabitans 30035725 AWJ20_3679 mRNA YEA4 NC_031674.1 4858576 4859718 D AWJ20_3679 <4858576..>4859718 Sugiyamaella lignohabitans 30035726 AWJ20_3680 mRNA AWJ20_3680 NC_031674.1 4859898 4861238 R AWJ20_3680 complement(<4859898..>4861238) Sugiyamaella lignohabitans 30035728 AWJ20_3681 mRNA RXT2 NC_031674.1 4863050 4863931 D AWJ20_3681 <4863050..>4863931 Sugiyamaella lignohabitans 30035729 AWJ20_3682 mRNA RTT107 NC_031674.1 4864200 4866797 R AWJ20_3682 complement(<4864200..>4866797) Sugiyamaella lignohabitans 30035730 AWJ20_3683 mRNA YPS3 NC_031674.1 4867879 4869414 D AWJ20_3683 <4867879..>4869414 Sugiyamaella lignohabitans 30035731 AWJ20_3684 mRNA RPG1 NC_031674.1 4869600 4872500 R AWJ20_3684 complement(<4869600..>4872500) Sugiyamaella lignohabitans 30035732 AWJ20_3685 mRNA AWJ20_3685 NC_031674.1 4876090 4880013 D AWJ20_3685 <4876090..>4880013 Sugiyamaella lignohabitans 30035733 AWJ20_3686 mRNA AWJ20_3686 NC_031674.1 4880426 4881277 D AWJ20_3686 <4880426..>4881277 Sugiyamaella lignohabitans 30035734 AWJ20_3687 mRNA RGD2 NC_031674.1 4881855 4884755 D AWJ20_3687 <4881855..>4884755 Sugiyamaella lignohabitans 30035735 AWJ20_3688 mRNA COQ8 NC_031674.1 4884829 4886490 R AWJ20_3688 complement(<4884829..>4886490) Sugiyamaella lignohabitans 30035736 AWJ20_3689 mRNA PRP43 NC_031674.1 4886679 4888955 D AWJ20_3689 <4886679..>4888955 Sugiyamaella lignohabitans 30035737 AWJ20_3691 mRNA JLP1 NC_031674.1 4890184 4891335 D AWJ20_3691 <4890184..>4891335 Sugiyamaella lignohabitans 30035740 AWJ20_3692 mRNA UTR2 NC_031674.1 4891559 4892980 R AWJ20_3692 complement(<4891559..>4892980) Sugiyamaella lignohabitans 30035741 AWJ20_3707 mRNA RIP1 NC_031671.1 2548 3243 D AWJ20_3707 <2548..>3243 Sugiyamaella lignohabitans 30035758 AWJ20_3708 mRNA STE11 NC_031671.1 4851 7451 D AWJ20_3708 <4851..>7451 Sugiyamaella lignohabitans 30035759 AWJ20_3709 mRNA AWJ20_3709 NC_031671.1 7585 9435 R AWJ20_3709 complement(<7585..>9435) Sugiyamaella lignohabitans 30035760 AWJ20_3710 mRNA AWJ20_3710 NC_031671.1 10076 13597 R AWJ20_3710 complement(<10076..>13597) Sugiyamaella lignohabitans 30035762 AWJ20_3711 mRNA YDJ1 NC_031671.1 16767 17999 D AWJ20_3711 <16767..>17999 Sugiyamaella lignohabitans 30035763 AWJ20_3712 mRNA MSG5 NC_031671.1 18485 19930 R AWJ20_3712 complement(<18485..>19930) Sugiyamaella lignohabitans 30035764 AWJ20_3713 mRNA MIC26 NC_031671.1 23143 23877 R AWJ20_3713 complement(<23143..>23877) Sugiyamaella lignohabitans 30035765 AWJ20_3714 mRNA FRE3 NC_031671.1 24512 26161 R AWJ20_3714 complement(<24512..>26161) Sugiyamaella lignohabitans 30035766 AWJ20_3715 mRNA AWJ20_3715 NC_031671.1 28670 29821 D AWJ20_3715 <28670..>29821 Sugiyamaella lignohabitans 30035767 AWJ20_3716 mRNA AWJ20_3716 NC_031671.1 31853 32113 R AWJ20_3716 complement(<31853..>32113) Sugiyamaella lignohabitans 30035768 AWJ20_3717 mRNA POP2 NC_031671.1 40106 41998 R AWJ20_3717 complement(<40106..>41998) Sugiyamaella lignohabitans 30035769 AWJ20_3718 mRNA SSK2 NC_031671.1 46241 49117 D AWJ20_3718 <46241..>49117 Sugiyamaella lignohabitans 30035770 AWJ20_3719 mRNA SSK2 NC_031671.1 49255 51228 D AWJ20_3719 <49255..>51228 Sugiyamaella lignohabitans 30035771 AWJ20_3720 mRNA GEF1 NC_031671.1 53001 55439 D AWJ20_3720 <53001..>55439 Sugiyamaella lignohabitans 30035773 AWJ20_3721 mRNA AWJ20_3721 NC_031671.1 56054 57070 R AWJ20_3721 complement(<56054..>57070) Sugiyamaella lignohabitans 30035774 AWJ20_3722 mRNA WHI2 NC_031671.1 58198 59196 D AWJ20_3722 <58198..>59196 Sugiyamaella lignohabitans 30035775 AWJ20_3723 mRNA COQ3 NC_031671.1 59408 60247 R AWJ20_3723 complement(<59408..>60247) Sugiyamaella lignohabitans 30035776 AWJ20_3724 mRNA AWJ20_3724 NC_031671.1 61623 61943 R AWJ20_3724 complement(<61623..>61943) Sugiyamaella lignohabitans 30035777 AWJ20_3725 mRNA PMT1 NC_031671.1 62521 65175 R AWJ20_3725 complement(<62521..>65175) Sugiyamaella lignohabitans 30035778 AWJ20_3726 mRNA HOL1 NC_031671.1 70237 71922 D AWJ20_3726 <70237..>71922 Sugiyamaella lignohabitans 30035779 AWJ20_3727 mRNA MNN10 NC_031671.1 75187 76836 D AWJ20_3727 <75187..>76836 Sugiyamaella lignohabitans 30035780 AWJ20_3728 mRNA FPK1 NC_031671.1 78829 81855 D AWJ20_3728 <78829..>81855 Sugiyamaella lignohabitans 30035781 AWJ20_3729 mRNA FEX2 NC_031671.1 81989 83152 R AWJ20_3729 complement(<81989..>83152) Sugiyamaella lignohabitans 30035782 AWJ20_3730 mRNA GCN3 NC_031671.1 84401 84823 D AWJ20_3730 <84401..>84823 Sugiyamaella lignohabitans 30035784 AWJ20_3731 mRNA RPC37 NC_031671.1 85030 85836 R AWJ20_3731 complement(<85030..>85836) Sugiyamaella lignohabitans 30035785 AWJ20_3732 mRNA DBP7 NC_031671.1 86579 88897 D AWJ20_3732 <86579..>88897 Sugiyamaella lignohabitans 30035786 AWJ20_3733 mRNA AWJ20_3733 NC_031671.1 93699 95492 D AWJ20_3733 <93699..>95492 Sugiyamaella lignohabitans 30035787 AWJ20_3734 mRNA AWJ20_3734 NC_031671.1 98087 100627 D AWJ20_3734 <98087..>100627 Sugiyamaella lignohabitans 30035788 AWJ20_3735 mRNA HHT2 NC_031671.1 101761 102183 R AWJ20_3735 complement(<101761..>102183) Sugiyamaella lignohabitans 30035789 AWJ20_3736 mRNA HHF2 NC_031671.1 103937 104248 D AWJ20_3736 <103937..>104248 Sugiyamaella lignohabitans 30035790 AWJ20_3737 mRNA RKI1 NC_031671.1 104583 105596 D AWJ20_3737 <104583..>105596 Sugiyamaella lignohabitans 30035791 AWJ20_3738 mRNA APM1 NC_031671.1 108260 109582 R AWJ20_3738 complement(<108260..>109582) Sugiyamaella lignohabitans 30035792 AWJ20_3739 mRNA AWJ20_3739 NC_031671.1 108522 108920 D AWJ20_3739 <108522..>108920 Sugiyamaella lignohabitans 30035793 AWJ20_3740 mRNA AWJ20_3740 NC_031671.1 111418 113187 R AWJ20_3740 complement(<111418..>113187) Sugiyamaella lignohabitans 30035795 AWJ20_3741 mRNA PET127 NC_031671.1 115364 117727 D AWJ20_3741 <115364..>117727 Sugiyamaella lignohabitans 30035796 AWJ20_3742 mRNA THI73 NC_031671.1 117861 118880 R AWJ20_3742 complement(<117861..>118880) Sugiyamaella lignohabitans 30035797 AWJ20_3743 mRNA HHO1 NC_031671.1 120325 120753 R AWJ20_3743 complement(<120325..>120753) Sugiyamaella lignohabitans 30035798 AWJ20_3744 mRNA SEF1 NC_031671.1 126947 128770 D AWJ20_3744 <126947..>128770 Sugiyamaella lignohabitans 30035799 AWJ20_3745 mRNA HIS2 NC_031671.1 129030 129977 D AWJ20_3745 <129030..>129977 Sugiyamaella lignohabitans 30035800 AWJ20_3746 mRNA AWJ20_3746 NC_031671.1 130088 131074 R AWJ20_3746 complement(<130088..>131074) Sugiyamaella lignohabitans 30035801 AWJ20_3747 mRNA AWJ20_3747 NC_031671.1 132003 134147 R AWJ20_3747 complement(<132003..>134147) Sugiyamaella lignohabitans 30035802 AWJ20_3748 mRNA DED81 NC_031671.1 134668 136368 D AWJ20_3748 <134668..>136368 Sugiyamaella lignohabitans 30035803 AWJ20_3749 mRNA SPS19 NC_031671.1 137503 138333 R AWJ20_3749 complement(<137503..>138333) Sugiyamaella lignohabitans 30035804 AWJ20_3750 mRNA AWJ20_3750 NC_031671.1 143207 144166 R AWJ20_3750 complement(<143207..>144166) Sugiyamaella lignohabitans 30035806 AWJ20_3751 mRNA PRE5 NC_031671.1 144714 145349 R AWJ20_3751 complement(<144714..>145349) Sugiyamaella lignohabitans 30035807 AWJ20_3752 mRNA ERV29 NC_031671.1 147370 148341 R AWJ20_3752 complement(<147370..>148341) Sugiyamaella lignohabitans 30035808 AWJ20_3753 mRNA AWJ20_3753 NC_031671.1 149580 152039 D AWJ20_3753 <149580..>152039 Sugiyamaella lignohabitans 30035809 AWJ20_3754 mRNA UBI4 NC_031671.1 153893 154890 D AWJ20_3754 join(<153893..154414,154870..>154890) Sugiyamaella lignohabitans 30035810 AWJ20_3755 mRNA INO1 NC_031671.1 159786 161393 D AWJ20_3755 <159786..>161393 Sugiyamaella lignohabitans 30035811 AWJ20_3756 mRNA AWJ20_3756 NC_031671.1 160002 160460 R AWJ20_3756 complement(<160002..>160460) Sugiyamaella lignohabitans 30035812 AWJ20_3757 mRNA KIP2 NC_031671.1 162215 164302 R AWJ20_3757 complement(<162215..>164302) Sugiyamaella lignohabitans 30035813 AWJ20_3758 mRNA TPM2 NC_031671.1 165741 166356 D AWJ20_3758 join(<165741..165758,165913..>166356) Sugiyamaella lignohabitans 30035814 AWJ20_3759 mRNA AWJ20_3759 NC_031671.1 166994 168097 D AWJ20_3759 <166994..>168097 Sugiyamaella lignohabitans 30035815 AWJ20_3760 mRNA ACC1 NC_031671.1 173456 179983 D AWJ20_3760 <173456..>179983 Sugiyamaella lignohabitans 30035817 AWJ20_3761 mRNA AWJ20_3761 NC_031671.1 177241 177642 R AWJ20_3761 complement(<177241..>177642) Sugiyamaella lignohabitans 30035818 AWJ20_3762 mRNA ERT1 NC_031671.1 180252 182000 R AWJ20_3762 complement(<180252..>182000) Sugiyamaella lignohabitans 30035819 AWJ20_3763 mRNA AAP1 NC_031671.1 185275 187482 D AWJ20_3763 <185275..>187482 Sugiyamaella lignohabitans 30035820 AWJ20_3764 mRNA AWJ20_3764 NC_031671.1 194525 195049 D AWJ20_3764 <194525..>195049 Sugiyamaella lignohabitans 30035821 AWJ20_3765 mRNA RIM15 NC_031671.1 195959 201064 D AWJ20_3765 <195959..>201064 Sugiyamaella lignohabitans 30035822 AWJ20_3766 mRNA SIS2 NC_031671.1 201367 203100 R AWJ20_3766 complement(<201367..>203100) Sugiyamaella lignohabitans 30035823 AWJ20_3767 mRNA PHO80 NC_031671.1 206522 208168 D AWJ20_3767 <206522..>208168 Sugiyamaella lignohabitans 30035824 AWJ20_3768 mRNA ECT1 NC_031671.1 209713 210915 D AWJ20_3768 <209713..>210915 Sugiyamaella lignohabitans 30035825 AWJ20_3769 mRNA CHS1 NC_031671.1 214505 217816 D AWJ20_3769 <214505..>217816 Sugiyamaella lignohabitans 30035826 AWJ20_3770 mRNA dtd NC_031671.1 218027 218737 D AWJ20_3770 <218027..>218737 Sugiyamaella lignohabitans 30035828 AWJ20_3771 mRNA AWJ20_3771 NC_031671.1 222301 223590 D AWJ20_3771 <222301..>223590 Sugiyamaella lignohabitans 30035829 AWJ20_3772 mRNA UTP14 NC_031671.1 223899 226607 D AWJ20_3772 <223899..>226607 Sugiyamaella lignohabitans 30035830 AWJ20_3773 mRNA XBP1 NC_031671.1 232657 235095 D AWJ20_3773 <232657..>235095 Sugiyamaella lignohabitans 30035831 AWJ20_3774 mRNA RSM10 NC_031671.1 235754 236602 R AWJ20_3774 complement(<235754..>236602) Sugiyamaella lignohabitans 30035832 AWJ20_3775 mRNA BMT2 NC_031671.1 237120 237908 D AWJ20_3775 <237120..>237908 Sugiyamaella lignohabitans 30035833 AWJ20_3776 mRNA AVT1 NC_031671.1 238833 240815 R AWJ20_3776 complement(<238833..>240815) Sugiyamaella lignohabitans 30035834 AWJ20_3777 mRNA AWJ20_3777 NC_031671.1 242840 243553 D AWJ20_3777 <242840..>243553 Sugiyamaella lignohabitans 30035835 AWJ20_3778 mRNA AWJ20_3778 NC_031671.1 243867 245744 R AWJ20_3778 complement(<243867..>245744) Sugiyamaella lignohabitans 30035836 AWJ20_3779 mRNA YPT7 NC_031671.1 247766 248209 D AWJ20_3779 <247766..>248209 Sugiyamaella lignohabitans 30035837 AWJ20_3780 mRNA ACS2 NC_031671.1 250075 252407 D AWJ20_3780 join(<250075..250118,250484..>252407) Sugiyamaella lignohabitans 30035839 AWJ20_3781 mRNA AWJ20_3781 NC_031671.1 253907 254410 D AWJ20_3781 <253907..>254410 Sugiyamaella lignohabitans 30035840 AWJ20_3782 mRNA RAD10 NC_031671.1 254505 255671 R AWJ20_3782 complement(<254505..>255671) Sugiyamaella lignohabitans 30035841 AWJ20_3783 mRNA AWJ20_3783 NC_031671.1 258775 259539 D AWJ20_3783 <258775..>259539 Sugiyamaella lignohabitans 30035842 AWJ20_3784 mRNA DTD1 NC_031671.1 261086 261400 R AWJ20_3784 complement(<261086..>261400) Sugiyamaella lignohabitans 30035843 AWJ20_3785 mRNA pof10 NC_031671.1 262458 265166 D AWJ20_3785 <262458..>265166 Sugiyamaella lignohabitans 30035844 AWJ20_3786 mRNA AWJ20_3786 NC_031671.1 265219 267531 R AWJ20_3786 complement(<265219..>267531) Sugiyamaella lignohabitans 30035845 AWJ20_3787 mRNA AWJ20_3787 NC_031671.1 267669 269339 R AWJ20_3787 complement(<267669..>269339) Sugiyamaella lignohabitans 30035846 AWJ20_3788 mRNA GPR1 NC_031671.1 274120 275625 D AWJ20_3788 <274120..>275625 Sugiyamaella lignohabitans 30035847 AWJ20_3789 mRNA RKM5 NC_031671.1 275748 276599 R AWJ20_3789 complement(<275748..>276599) Sugiyamaella lignohabitans 30035848 AWJ20_3790 mRNA HOM2 NC_031671.1 276882 277388 R AWJ20_3790 complement(<276882..>277388) Sugiyamaella lignohabitans 30035850 AWJ20_3791 mRNA HOS4 NC_031671.1 278542 281805 D AWJ20_3791 <278542..>281805 Sugiyamaella lignohabitans 30035851 AWJ20_3792 mRNA AWJ20_3792 NC_031671.1 282424 283662 R AWJ20_3792 complement(<282424..>283662) Sugiyamaella lignohabitans 30035852 AWJ20_3793 mRNA FBP26 NC_031671.1 287753 288880 D AWJ20_3793 <287753..>288880 Sugiyamaella lignohabitans 30035853 AWJ20_3794 mRNA SRS2 NC_031671.1 289346 291289 D AWJ20_3794 <289346..>291289 Sugiyamaella lignohabitans 30035854 AWJ20_3795 mRNA AWJ20_3795 NC_031671.1 291885 292643 R AWJ20_3795 complement(<291885..>292643) Sugiyamaella lignohabitans 30035855 AWJ20_3796 mRNA STL1 NC_031671.1 293054 294529 R AWJ20_3796 complement(<293054..>294529) Sugiyamaella lignohabitans 30035856 AWJ20_3797 mRNA MPS1 NC_031671.1 296215 298728 D AWJ20_3797 <296215..>298728 Sugiyamaella lignohabitans 30035857 AWJ20_3798 mRNA RAS2 NC_031671.1 302689 303480 D AWJ20_3798 <302689..>303480 Sugiyamaella lignohabitans 30035858 AWJ20_3799 mRNA YHK8 NC_031671.1 306722 308389 R AWJ20_3799 complement(<306722..>308389) Sugiyamaella lignohabitans 30035859 AWJ20_3800 mRNA ESS1 NC_031671.1 311367 311768 R AWJ20_3800 complement(<311367..>311768) Sugiyamaella lignohabitans 30035862 AWJ20_3801 mRNA AWJ20_3801 NC_031671.1 313836 314834 D AWJ20_3801 <313836..>314834 Sugiyamaella lignohabitans 30035863 AWJ20_3802 mRNA AWJ20_3802 NC_031671.1 315717 316349 D AWJ20_3802 <315717..>316349 Sugiyamaella lignohabitans 30035864 AWJ20_3803 mRNA AWJ20_3803 NC_031671.1 316646 319810 R AWJ20_3803 complement(<316646..>319810) Sugiyamaella lignohabitans 30035865 AWJ20_3805 mRNA AWJ20_3805 NC_031671.1 321912 323276 D AWJ20_3805 <321912..>323276 Sugiyamaella lignohabitans 30035867 AWJ20_3806 mRNA AWJ20_3806 NC_031671.1 323630 324391 D AWJ20_3806 <323630..>324391 Sugiyamaella lignohabitans 30035868 AWJ20_3807 mRNA CMP2 NC_031671.1 327407 329305 R AWJ20_3807 complement(<327407..>329305) Sugiyamaella lignohabitans 30035869 AWJ20_3808 mRNA TSR2 NC_031671.1 330504 331115 D AWJ20_3808 <330504..>331115 Sugiyamaella lignohabitans 30035870 AWJ20_3809 mRNA AWJ20_3809 NC_031671.1 331283 333655 R AWJ20_3809 complement(<331283..>333655) Sugiyamaella lignohabitans 30035871 AWJ20_3811 mRNA CDA1 NC_031671.1 334574 335491 D AWJ20_3811 <334574..>335491 Sugiyamaella lignohabitans 30035874 AWJ20_3812 mRNA TMT1 NC_031671.1 337686 339938 D AWJ20_3812 <337686..>339938 Sugiyamaella lignohabitans 30035875 AWJ20_3813 mRNA AWJ20_3813 NC_031671.1 341366 342292 D AWJ20_3813 <341366..>342292 Sugiyamaella lignohabitans 30035876 AWJ20_3814 mRNA CCC2 NC_031671.1 342657 344816 D AWJ20_3814 <342657..>344816 Sugiyamaella lignohabitans 30035877 AWJ20_3815 mRNA GPM1 NC_031671.1 345007 345756 R AWJ20_3815 complement(<345007..>345756) Sugiyamaella lignohabitans 30035878 AWJ20_3816 mRNA YPT1 NC_031671.1 349711 350178 D AWJ20_3816 <349711..>350178 Sugiyamaella lignohabitans 30035879 AWJ20_3817 mRNA PUF6 NC_031671.1 350571 352538 D AWJ20_3817 <350571..>352538 Sugiyamaella lignohabitans 30035880 AWJ20_3818 mRNA HAP3 NC_031671.1 352859 353602 R AWJ20_3818 complement(<352859..>353602) Sugiyamaella lignohabitans 30035881 AWJ20_3819 mRNA AWJ20_3819 NC_031671.1 354966 356045 R AWJ20_3819 complement(<354966..>356045) Sugiyamaella lignohabitans 30035882 AWJ20_3820 mRNA VPS3 NC_031671.1 357300 360764 D AWJ20_3820 <357300..>360764 Sugiyamaella lignohabitans 30035884 AWJ20_3821 mRNA AWJ20_3821 NC_031671.1 360932 361576 R AWJ20_3821 complement(<360932..>361576) Sugiyamaella lignohabitans 30035885 AWJ20_3822 mRNA PRP18 NC_031671.1 362367 363341 D AWJ20_3822 <362367..>363341 Sugiyamaella lignohabitans 30035886 AWJ20_3823 mRNA SGT1 NC_031671.1 363718 364554 R AWJ20_3823 complement(<363718..>364554) Sugiyamaella lignohabitans 30035887 AWJ20_3824 mRNA NOB1 NC_031671.1 365586 367052 D AWJ20_3824 <365586..>367052 Sugiyamaella lignohabitans 30035888 AWJ20_3825 mRNA RSR1 NC_031671.1 371591 372541 D AWJ20_3825 <371591..>372541 Sugiyamaella lignohabitans 30035889 AWJ20_3826 mRNA AWJ20_3826 NC_031671.1 373013 374818 R AWJ20_3826 complement(<373013..>374818) Sugiyamaella lignohabitans 30035890 AWJ20_3827 mRNA AWJ20_3827 NC_031671.1 375670 376845 D AWJ20_3827 <375670..>376845 Sugiyamaella lignohabitans 30035891 AWJ20_3828 mRNA OSH2 NC_031671.1 380125 383535 D AWJ20_3828 <380125..>383535 Sugiyamaella lignohabitans 30035892 AWJ20_3829 mRNA MEP3 NC_031671.1 387080 388555 D AWJ20_3829 <387080..>388555 Sugiyamaella lignohabitans 30035893 AWJ20_3830 mRNA csn2 NC_031671.1 389005 390252 R AWJ20_3830 complement(<389005..>390252) Sugiyamaella lignohabitans 30035895 AWJ20_3831 mRNA NAM2 NC_031671.1 391496 394201 R AWJ20_3831 complement(<391496..>394201) Sugiyamaella lignohabitans 30035896 AWJ20_3832 mRNA NHX1 NC_031671.1 396173 397399 D AWJ20_3832 <396173..>397399 Sugiyamaella lignohabitans 30035897 AWJ20_3833 mRNA SMC6 NC_031671.1 399759 402416 D AWJ20_3833 <399759..>402416 Sugiyamaella lignohabitans 30035898 AWJ20_3834 mRNA SMC6 NC_031671.1 402676 403341 D AWJ20_3834 <402676..>403341 Sugiyamaella lignohabitans 30035899 AWJ20_3835 mRNA USO1 NC_031671.1 403435 405690 R AWJ20_3835 complement(<403435..>405690) Sugiyamaella lignohabitans 30035900 AWJ20_3836 mRNA USO1 NC_031671.1 405732 407753 R AWJ20_3836 complement(<405732..>407753) Sugiyamaella lignohabitans 30035901 AWJ20_3837 mRNA AWJ20_3837 NC_031671.1 412571 414010 D AWJ20_3837 <412571..>414010 Sugiyamaella lignohabitans 30035902 AWJ20_3838 mRNA UTP20 NC_031671.1 414180 420110 R AWJ20_3838 complement(<414180..>420110) Sugiyamaella lignohabitans 30035903 AWJ20_3839 mRNA AWJ20_3839 NC_031671.1 420190 421350 R AWJ20_3839 complement(<420190..>421350) Sugiyamaella lignohabitans 30035904 AWJ20_3840 mRNA URA7 NC_031671.1 422530 424269 R AWJ20_3840 complement(<422530..>424269) Sugiyamaella lignohabitans 30035906 AWJ20_3841 mRNA AWJ20_3841 NC_031671.1 423019 423783 D AWJ20_3841 <423019..>423783 Sugiyamaella lignohabitans 30035907 AWJ20_3842 mRNA YPR1 NC_031671.1 425685 426581 D AWJ20_3842 <425685..>426581 Sugiyamaella lignohabitans 30035908 AWJ20_3843 mRNA RMD1 NC_031671.1 427253 428629 D AWJ20_3843 <427253..>428629 Sugiyamaella lignohabitans 30035909 AWJ20_3844 mRNA AWJ20_3844 NC_031671.1 434804 436258 D AWJ20_3844 <434804..>436258 Sugiyamaella lignohabitans 30035910 AWJ20_3845 mRNA CDC4 NC_031671.1 437248 439506 R AWJ20_3845 complement(<437248..>439506) Sugiyamaella lignohabitans 30035911 AWJ20_3846 mRNA AWJ20_3846 NC_031671.1 442775 443782 D AWJ20_3846 <442775..>443782 Sugiyamaella lignohabitans 30035912 AWJ20_3847 mRNA BXI1 NC_031671.1 447425 448225 D AWJ20_3847 <447425..>448225 Sugiyamaella lignohabitans 30035913 AWJ20_3848 mRNA PHO11 NC_031671.1 448477 450570 R AWJ20_3848 complement(<448477..>450570) Sugiyamaella lignohabitans 30035914 AWJ20_3849 mRNA AWJ20_3849 NC_031671.1 451234 452847 R AWJ20_3849 complement(<451234..>452847) Sugiyamaella lignohabitans 30035915 AWJ20_3850 mRNA AWJ20_3850 NC_031671.1 453209 455224 R AWJ20_3850 complement(<453209..>455224) Sugiyamaella lignohabitans 30035917 AWJ20_3851 mRNA URA3 NC_031671.1 455956 456753 D AWJ20_3851 <455956..>456753 Sugiyamaella lignohabitans 30035918 AWJ20_3852 mRNA DBP3 NC_031671.1 458453 460072 R AWJ20_3852 complement(<458453..>460072) Sugiyamaella lignohabitans 30035919 AWJ20_3853 mRNA ERO1 NC_031671.1 461851 463677 D AWJ20_3853 <461851..>463677 Sugiyamaella lignohabitans 30035920 AWJ20_3854 mRNA RRT12 NC_031671.1 464898 465311 R AWJ20_3854 complement(<464898..>465311) Sugiyamaella lignohabitans 30035921 AWJ20_3855 mRNA RRD1 NC_031671.1 466442 467893 R AWJ20_3855 complement(<466442..>467893) Sugiyamaella lignohabitans 30035922 AWJ20_3856 mRNA NUP192 NC_031671.1 468646 473577 D AWJ20_3856 <468646..>473577 Sugiyamaella lignohabitans 30035923 AWJ20_3857 mRNA NSP1 NC_031671.1 473749 476502 R AWJ20_3857 complement(join(<473749..475815,476488..>476502)) Sugiyamaella lignohabitans 30035924 AWJ20_3858 mRNA GCV2 NC_031671.1 477310 480333 D AWJ20_3858 <477310..>480333 Sugiyamaella lignohabitans 30035925 AWJ20_3859 mRNA TRM7 NC_031671.1 482919 483815 D AWJ20_3859 <482919..>483815 Sugiyamaella lignohabitans 30035926 AWJ20_3860 mRNA KRS1 NC_031671.1 484050 485798 R AWJ20_3860 complement(<484050..>485798) Sugiyamaella lignohabitans 30035928 AWJ20_3861 mRNA TFG2 NC_031671.1 486426 487697 D AWJ20_3861 <486426..>487697 Sugiyamaella lignohabitans 30035929 AWJ20_3862 mRNA AWJ20_3862 NC_031671.1 490103 491218 D AWJ20_3862 <490103..>491218 Sugiyamaella lignohabitans 30035930 AWJ20_3863 mRNA AWJ20_3863 NC_031671.1 491935 493533 D AWJ20_3863 <491935..>493533 Sugiyamaella lignohabitans 30035931 AWJ20_3864 mRNA KIN3 NC_031671.1 494277 496028 D AWJ20_3864 <494277..>496028 Sugiyamaella lignohabitans 30035932 AWJ20_3865 mRNA ACT1 NC_031671.1 496266 497540 R AWJ20_3865 complement(<496266..>497540) Sugiyamaella lignohabitans 30035933 AWJ20_3866 mRNA PRT1 NC_031671.1 498378 500636 D AWJ20_3866 <498378..>500636 Sugiyamaella lignohabitans 30035934 AWJ20_3867 mRNA IMD4 NC_031671.1 504870 505979 R AWJ20_3867 complement(<504870..>505979) Sugiyamaella lignohabitans 30035935 AWJ20_3868 mRNA IMD4 NC_031671.1 506268 506783 R AWJ20_3868 complement(<506268..>506783) Sugiyamaella lignohabitans 30035936 AWJ20_3869 mRNA PEP4 NC_031671.1 507742 508815 R AWJ20_3869 complement(<507742..>508815) Sugiyamaella lignohabitans 30035937 AWJ20_3870 mRNA AWJ20_3870 NC_031671.1 512551 514062 R AWJ20_3870 complement(<512551..>514062) Sugiyamaella lignohabitans 30035939 AWJ20_3871 mRNA AWJ20_3871 NC_031671.1 517514 519562 D AWJ20_3871 join(<517514..517627,518288..>519562) Sugiyamaella lignohabitans 30035940 AWJ20_3872 mRNA AWJ20_3872 NC_031671.1 518294 519583 R AWJ20_3872 complement(<518294..>519583) Sugiyamaella lignohabitans 30035941 AWJ20_3873 mRNA AWJ20_3873 NC_031671.1 521620 522333 R AWJ20_3873 complement(<521620..>522333) Sugiyamaella lignohabitans 30035942 AWJ20_3874 mRNA AWJ20_3874 NC_031671.1 521975 522265 D AWJ20_3874 <521975..>522265 Sugiyamaella lignohabitans 30035943 AWJ20_3875 mRNA MPM1 NC_031671.1 525204 526226 D AWJ20_3875 <525204..>526226 Sugiyamaella lignohabitans 30035944 AWJ20_3876 mRNA GLC8 NC_031671.1 527614 528468 D AWJ20_3876 <527614..>528468 Sugiyamaella lignohabitans 30035945 AWJ20_3877 mRNA TUB2 NC_031671.1 531013 532137 D AWJ20_3877 <531013..>532137 Sugiyamaella lignohabitans 30035946 AWJ20_3878 mRNA CCC1 NC_031671.1 540215 541075 D AWJ20_3878 <540215..>541075 Sugiyamaella lignohabitans 30035947 AWJ20_3879 mRNA AWJ20_3879 NC_031671.1 541768 546084 R AWJ20_3879 complement(<541768..>546084) Sugiyamaella lignohabitans 30035948 AWJ20_3880 mRNA MUP1 NC_031671.1 548349 550058 D AWJ20_3880 <548349..>550058 Sugiyamaella lignohabitans 30035950 AWJ20_3881 mRNA AWJ20_3881 NC_031671.1 550308 552002 R AWJ20_3881 complement(<550308..>552002) Sugiyamaella lignohabitans 30035951 AWJ20_3882 mRNA ACT1 NC_031671.1 552510 553592 R AWJ20_3882 complement(<552510..>553592) Sugiyamaella lignohabitans 30035952 AWJ20_3883 mRNA AWJ20_3883 NC_031671.1 559176 559388 D AWJ20_3883 <559176..>559388 Sugiyamaella lignohabitans 30035953 AWJ20_3884 mRNA PMC1 NC_031671.1 562802 566446 D AWJ20_3884 <562802..>566446 Sugiyamaella lignohabitans 30035954 AWJ20_3885 mRNA AWJ20_3885 NC_031671.1 563746 564084 R AWJ20_3885 complement(<563746..>564084) Sugiyamaella lignohabitans 30035955 AWJ20_3886 mRNA AWJ20_3886 NC_031671.1 564754 565350 R AWJ20_3886 complement(<564754..>565350) Sugiyamaella lignohabitans 30035956 AWJ20_3887 mRNA YPS1 NC_031671.1 567989 569179 R AWJ20_3887 complement(<567989..>569179) Sugiyamaella lignohabitans 30035957 AWJ20_3889 mRNA AWJ20_3889 NC_031671.1 570577 571596 R AWJ20_3889 complement(<570577..>571596) Sugiyamaella lignohabitans 30035959 AWJ20_3890 mRNA ATG3 NC_031671.1 573547 574593 D AWJ20_3890 <573547..>574593 Sugiyamaella lignohabitans 30035961 AWJ20_3891 mRNA PDS5 NC_031671.1 576039 579665 D AWJ20_3891 <576039..>579665 Sugiyamaella lignohabitans 30035962 AWJ20_3892 mRNA RCO1 NC_031671.1 579889 580893 R AWJ20_3892 complement(<579889..>580893) Sugiyamaella lignohabitans 30035963 AWJ20_3893 mRNA MAP2 NC_031671.1 583659 585271 R AWJ20_3893 complement(join(<583659..584782,585259..>585271)) Sugiyamaella lignohabitans 30035964 AWJ20_3894 mRNA ARG7 NC_031671.1 597377 598729 D AWJ20_3894 <597377..>598729 Sugiyamaella lignohabitans 30035965 AWJ20_3895 mRNA AWJ20_3895 NC_031671.1 597652 598059 R AWJ20_3895 complement(<597652..>598059) Sugiyamaella lignohabitans 30035966 AWJ20_3896 mRNA AWJ20_3896 NC_031671.1 602256 604001 R AWJ20_3896 complement(<602256..>604001) Sugiyamaella lignohabitans 30035967 AWJ20_3897 mRNA SNU13 NC_031671.1 605282 605665 R AWJ20_3897 complement(<605282..>605665) Sugiyamaella lignohabitans 30035968 AWJ20_3898 mRNA AWJ20_3898 NC_031671.1 606664 608376 D AWJ20_3898 <606664..>608376 Sugiyamaella lignohabitans 30035969 AWJ20_3899 mRNA APE1 NC_031671.1 613092 614648 D AWJ20_3899 <613092..>614648 Sugiyamaella lignohabitans 30035970 AWJ20_3900 mRNA AMF1 NC_031671.1 614915 616768 R AWJ20_3900 complement(<614915..>616768) Sugiyamaella lignohabitans 30035973 AWJ20_3901 mRNA DAL5 NC_031671.1 619297 620592 D AWJ20_3901 <619297..>620592 Sugiyamaella lignohabitans 30035974 AWJ20_3902 mRNA PAT1 NC_031671.1 623341 626019 D AWJ20_3902 <623341..>626019 Sugiyamaella lignohabitans 30035975 AWJ20_3903 mRNA ACP1 NC_031671.1 626975 627202 D AWJ20_3903 <626975..>627202 Sugiyamaella lignohabitans 30035976 AWJ20_3904 mRNA PCS60 NC_031671.1 629147 630802 D AWJ20_3904 <629147..>630802 Sugiyamaella lignohabitans 30035977 AWJ20_3905 mRNA DBP6 NC_031671.1 631041 632960 R AWJ20_3905 complement(<631041..>632960) Sugiyamaella lignohabitans 30035978 AWJ20_3906 mRNA MSS4 NC_031671.1 635645 637453 D AWJ20_3906 <635645..>637453 Sugiyamaella lignohabitans 30035979 AWJ20_3907 mRNA POL90 NC_031671.1 655603 658500 R AWJ20_3907 complement(<655603..>658500) Sugiyamaella lignohabitans 30035980 AWJ20_3909 mRNA AWJ20_3909 NC_031671.1 664264 665214 D AWJ20_3909 <664264..>665214 Sugiyamaella lignohabitans 30035982 AWJ20_3910 mRNA NUP85 NC_031671.1 665497 668793 D AWJ20_3910 <665497..>668793 Sugiyamaella lignohabitans 30035984 AWJ20_3911 mRNA AWJ20_3911 NC_031671.1 670651 672309 D AWJ20_3911 <670651..>672309 Sugiyamaella lignohabitans 30035985 AWJ20_3912 mRNA AWJ20_3912 NC_031671.1 672479 673576 R AWJ20_3912 complement(<672479..>673576) Sugiyamaella lignohabitans 30035986 AWJ20_3913 mRNA ESA1 NC_031671.1 673943 675442 D AWJ20_3913 <673943..>675442 Sugiyamaella lignohabitans 30035987 AWJ20_3914 mRNA RRD2 NC_031671.1 675743 676891 R AWJ20_3914 complement(<675743..>676891) Sugiyamaella lignohabitans 30035988 AWJ20_3915 mRNA ALG13 NC_031671.1 677182 677685 D AWJ20_3915 <677182..>677685 Sugiyamaella lignohabitans 30035989 AWJ20_3916 mRNA ISA2 NC_031671.1 677907 678563 R AWJ20_3916 complement(<677907..>678563) Sugiyamaella lignohabitans 30035990 AWJ20_3917 mRNA AWJ20_3917 NC_031671.1 679192 680208 D AWJ20_3917 <679192..>680208 Sugiyamaella lignohabitans 30035991 AWJ20_3918 mRNA PHO8 NC_031671.1 682735 684348 R AWJ20_3918 complement(<682735..>684348) Sugiyamaella lignohabitans 30035992 AWJ20_3919 mRNA ARO8 NC_031671.1 685842 687503 R AWJ20_3919 complement(<685842..>687503) Sugiyamaella lignohabitans 30035993 AWJ20_3920 mRNA AWJ20_3920 NC_031671.1 687566 687775 R AWJ20_3920 complement(<687566..>687775) Sugiyamaella lignohabitans 30035995 AWJ20_3921 mRNA ARL3 NC_031671.1 688549 689145 R AWJ20_3921 complement(<688549..>689145) Sugiyamaella lignohabitans 30035996 AWJ20_3922 mRNA ADE1 NC_031671.1 690026 690946 D AWJ20_3922 <690026..>690946 Sugiyamaella lignohabitans 30035997 AWJ20_3923 mRNA PTC6 NC_031671.1 691740 693089 D AWJ20_3923 <691740..>693089 Sugiyamaella lignohabitans 30035998 AWJ20_3924 mRNA POL90 NC_031671.1 702558 705455 R AWJ20_3924 complement(<702558..>705455) Sugiyamaella lignohabitans 30035999 AWJ20_3925 mRNA AWJ20_3925 NC_031671.1 717614 718165 R AWJ20_3925 complement(<717614..>718165) Sugiyamaella lignohabitans 30036000 AWJ20_3927 mRNA AWJ20_3927 NC_031671.1 719248 719544 R AWJ20_3927 complement(<719248..>719544) Sugiyamaella lignohabitans 30036002 AWJ20_3928 mRNA AOH2 NC_031671.1 720516 724226 D AWJ20_3928 <720516..>724226 Sugiyamaella lignohabitans 30036003 AWJ20_3929 mRNA SAY1 NC_031671.1 725372 726289 R AWJ20_3929 complement(<725372..>726289) Sugiyamaella lignohabitans 30036004 AWJ20_3930 mRNA AWJ20_3930 NC_031671.1 728241 729293 D AWJ20_3930 <728241..>729293 Sugiyamaella lignohabitans 30036006 AWJ20_3931 mRNA COQ6 NC_031671.1 729621 731246 D AWJ20_3931 <729621..>731246 Sugiyamaella lignohabitans 30036007 AWJ20_3932 mRNA AWJ20_3932 NC_031671.1 731869 733311 D AWJ20_3932 <731869..>733311 Sugiyamaella lignohabitans 30036008 AWJ20_3933 mRNA AWJ20_3933 NC_031671.1 733458 734279 R AWJ20_3933 complement(<733458..>734279) Sugiyamaella lignohabitans 30036009 AWJ20_3934 mRNA TGL2 NC_031671.1 736051 737364 D AWJ20_3934 <736051..>737364 Sugiyamaella lignohabitans 30036010 AWJ20_3935 mRNA ALD5 NC_031671.1 737539 738930 R AWJ20_3935 complement(<737539..>738930) Sugiyamaella lignohabitans 30036011 AWJ20_3936 mRNA AWJ20_3936 NC_031671.1 740233 741807 D AWJ20_3936 <740233..>741807 Sugiyamaella lignohabitans 30036012 AWJ20_3937 mRNA AWJ20_3937 NC_031671.1 742105 743130 R AWJ20_3937 complement(<742105..>743130) Sugiyamaella lignohabitans 30036013 AWJ20_3938 mRNA ORC1 NC_031671.1 746553 748787 D AWJ20_3938 <746553..>748787 Sugiyamaella lignohabitans 30036014 AWJ20_3939 mRNA SEC14 NC_031671.1 748898 749689 R AWJ20_3939 complement(<748898..>749689) Sugiyamaella lignohabitans 30036015 AWJ20_3940 mRNA NUP84 NC_031671.1 751932 753830 D AWJ20_3940 <751932..>753830 Sugiyamaella lignohabitans 30036017 AWJ20_3942 mRNA TOP1 NC_031671.1 754376 756945 R AWJ20_3942 complement(join(<754376..756696,756882..>756945)) Sugiyamaella lignohabitans 30036019 AWJ20_3943 mRNA CBP3 NC_031671.1 757564 758625 R AWJ20_3943 complement(<757564..>758625) Sugiyamaella lignohabitans 30036020 AWJ20_3944 mRNA EMC2 NC_031671.1 758904 759806 D AWJ20_3944 <758904..>759806 Sugiyamaella lignohabitans 30036021 AWJ20_3945 mRNA TIP41 NC_031671.1 760023 760913 R AWJ20_3945 complement(<760023..>760913) Sugiyamaella lignohabitans 30036022 AWJ20_3946 mRNA AWJ20_3946 NC_031671.1 765914 767086 R AWJ20_3946 complement(<765914..>767086) Sugiyamaella lignohabitans 30036023 AWJ20_3947 mRNA GOR1 NC_031671.1 769234 770232 D AWJ20_3947 <769234..>770232 Sugiyamaella lignohabitans 30036024 AWJ20_3948 mRNA AWJ20_3948 NC_031671.1 770433 771488 R AWJ20_3948 complement(<770433..>771488) Sugiyamaella lignohabitans 30036025 AWJ20_3949 mRNA AWJ20_3949 NC_031671.1 776972 777658 R AWJ20_3949 complement(<776972..>777658) Sugiyamaella lignohabitans 30036026 AWJ20_3950 mRNA AWJ20_3950 NC_031671.1 781841 782137 D AWJ20_3950 <781841..>782137 Sugiyamaella lignohabitans 30036028 AWJ20_3951 mRNA PBP1 NC_031671.1 783804 787265 D AWJ20_3951 <783804..>787265 Sugiyamaella lignohabitans 30036029 AWJ20_3952 mRNA AWJ20_3952 NC_031671.1 787754 789199 D AWJ20_3952 <787754..>789199 Sugiyamaella lignohabitans 30036030 AWJ20_3953 mRNA RRN7 NC_031671.1 789406 791118 D AWJ20_3953 <789406..>791118 Sugiyamaella lignohabitans 30036031 AWJ20_3954 mRNA CDC21 NC_031671.1 791308 792243 R AWJ20_3954 complement(<791308..>792243) Sugiyamaella lignohabitans 30036032 AWJ20_3956 mRNA GIP3 NC_031671.1 798789 802895 D AWJ20_3956 join(<798789..799029,799108..>802895) Sugiyamaella lignohabitans 30036034 AWJ20_3957 mRNA RPL5 NC_031671.1 803096 803986 R AWJ20_3957 complement(<803096..>803986) Sugiyamaella lignohabitans 30036035 AWJ20_3958 mRNA AWJ20_3958 NC_031671.1 807826 808116 R AWJ20_3958 complement(<807826..>808116) Sugiyamaella lignohabitans 30036036 AWJ20_3959 mRNA AWJ20_3959 NC_031671.1 808285 808620 R AWJ20_3959 complement(<808285..>808620) Sugiyamaella lignohabitans 30036037 AWJ20_3960 mRNA AWJ20_3960 NC_031671.1 809345 810463 R AWJ20_3960 complement(<809345..>810463) Sugiyamaella lignohabitans 30036039 AWJ20_3961 mRNA YKU70 NC_031671.1 811717 812742 R AWJ20_3961 complement(<811717..>812742) Sugiyamaella lignohabitans 30036040 AWJ20_3962 mRNA AWJ20_3962 NC_031671.1 812890 813144 R AWJ20_3962 complement(<812890..>813144) Sugiyamaella lignohabitans 30036041 AWJ20_3963 mRNA POL2 NC_031671.1 814621 820464 D AWJ20_3963 <814621..>820464 Sugiyamaella lignohabitans 30036042 AWJ20_3964 mRNA RAD14 NC_031671.1 820501 820794 R AWJ20_3964 complement(<820501..>820794) Sugiyamaella lignohabitans 30036043 AWJ20_3965 mRNA ORC5 NC_031671.1 822754 823404 D AWJ20_3965 <822754..>823404 Sugiyamaella lignohabitans 30036044 AWJ20_3966 mRNA VPS27 NC_031671.1 823526 825286 R AWJ20_3966 complement(<823526..>825286) Sugiyamaella lignohabitans 30036045 AWJ20_3967 mRNA IST1 NC_031671.1 825831 826754 D AWJ20_3967 join(<825831..825899,826146..>826754) Sugiyamaella lignohabitans 30036046 AWJ20_3968 mRNA TAM41 NC_031671.1 826881 827792 R AWJ20_3968 complement(<826881..>827792) Sugiyamaella lignohabitans 30036047 AWJ20_3970 mRNA DCR2 NC_031671.1 832165 833886 R AWJ20_3970 complement(<832165..>833886) Sugiyamaella lignohabitans 30036050 AWJ20_3971 mRNA FCF1 NC_031671.1 834153 834722 R AWJ20_3971 complement(<834153..>834722) Sugiyamaella lignohabitans 30036051 AWJ20_3972 mRNA PEP5 NC_031671.1 835067 837961 D AWJ20_3972 <835067..>837961 Sugiyamaella lignohabitans 30036052 AWJ20_3973 mRNA AWJ20_3973 NC_031671.1 838154 840124 R AWJ20_3973 complement(<838154..>840124) Sugiyamaella lignohabitans 30036053 AWJ20_3974 mRNA AWJ20_3974 NC_031671.1 840468 841616 D AWJ20_3974 <840468..>841616 Sugiyamaella lignohabitans 30036054 AWJ20_3975 mRNA AWJ20_3975 NC_031671.1 841645 843585 R AWJ20_3975 complement(<841645..>843585) Sugiyamaella lignohabitans 30036055 AWJ20_3976 mRNA PUT4 NC_031671.1 844164 845768 D AWJ20_3976 <844164..>845768 Sugiyamaella lignohabitans 30036056 AWJ20_3977 mRNA SEN2 NC_031671.1 846185 847399 D AWJ20_3977 <846185..>847399 Sugiyamaella lignohabitans 30036057 AWJ20_3978 mRNA AWJ20_3978 NC_031671.1 850123 850623 D AWJ20_3978 <850123..>850623 Sugiyamaella lignohabitans 30036058 AWJ20_3979 mRNA AWJ20_3979 NC_031671.1 850722 851177 R AWJ20_3979 complement(<850722..>851177) Sugiyamaella lignohabitans 30036059 AWJ20_3980 mRNA AWJ20_3980 NC_031671.1 852101 852478 R AWJ20_3980 complement(<852101..>852478) Sugiyamaella lignohabitans 30036061 AWJ20_3981 mRNA AWJ20_3981 NC_031671.1 855167 856948 D AWJ20_3981 <855167..>856948 Sugiyamaella lignohabitans 30036062 AWJ20_3982 mRNA SNF5 NC_031671.1 857672 860077 D AWJ20_3982 <857672..>860077 Sugiyamaella lignohabitans 30036063 AWJ20_3983 mRNA HTS1 NC_031671.1 860200 861897 R AWJ20_3983 complement(<860200..>861897) Sugiyamaella lignohabitans 30036064 AWJ20_3984 mRNA TFA1 NC_031671.1 862339 863472 D AWJ20_3984 <862339..>863472 Sugiyamaella lignohabitans 30036065 AWJ20_3985 mRNA AWJ20_3985 NC_031671.1 864284 866941 R AWJ20_3985 complement(<864284..>866941) Sugiyamaella lignohabitans 30036066 AWJ20_3986 mRNA VMA3 NC_031671.1 868717 869025 R AWJ20_3986 complement(<868717..>869025) Sugiyamaella lignohabitans 30036067 AWJ20_3987 mRNA PRP46 NC_031671.1 870547 871992 R AWJ20_3987 complement(<870547..>871992) Sugiyamaella lignohabitans 30036068 AWJ20_3988 mRNA NUS1 NC_031671.1 884483 885475 D AWJ20_3988 <884483..>885475 Sugiyamaella lignohabitans 30036069 AWJ20_3989 mRNA NPR3 NC_031671.1 885790 888651 D AWJ20_3989 <885790..>888651 Sugiyamaella lignohabitans 30036070 AWJ20_3990 mRNA UBC8 NC_031671.1 888921 889427 R AWJ20_3990 complement(<888921..>889427) Sugiyamaella lignohabitans 30036072 AWJ20_3991 mRNA SPO7 NC_031671.1 890923 892407 D AWJ20_3991 <890923..>892407 Sugiyamaella lignohabitans 30036073 AWJ20_3992 mRNA GPI13 NC_031671.1 893079 896186 D AWJ20_3992 <893079..>896186 Sugiyamaella lignohabitans 30036074 AWJ20_3993 mRNA AWJ20_3993 NC_031671.1 896334 897368 R AWJ20_3993 complement(<896334..>897368) Sugiyamaella lignohabitans 30036075 AWJ20_3994 mRNA AWJ20_3994 NC_031671.1 897589 900696 R AWJ20_3994 complement(<897589..>900696) Sugiyamaella lignohabitans 30036076 AWJ20_3995 mRNA AWJ20_3995 NC_031671.1 901035 903077 R AWJ20_3995 complement(<901035..>903077) Sugiyamaella lignohabitans 30036077 AWJ20_3996 mRNA SVP26 NC_031671.1 907621 908304 D AWJ20_3996 <907621..>908304 Sugiyamaella lignohabitans 30036078 AWJ20_3997 mRNA PRS2 NC_031671.1 909451 910419 D AWJ20_3997 <909451..>910419 Sugiyamaella lignohabitans 30036079 AWJ20_3998 mRNA SLY41 NC_031671.1 910743 912932 R AWJ20_3998 complement(<910743..>912932) Sugiyamaella lignohabitans 30036080 AWJ20_3999 mRNA FRA1 NC_031671.1 914141 916000 R AWJ20_3999 complement(<914141..>916000) Sugiyamaella lignohabitans 30036081 AWJ20_4000 mRNA ERG11 NC_031671.1 916502 917815 R AWJ20_4000 complement(<916502..>917815) Sugiyamaella lignohabitans 30036085 AWJ20_4001 mRNA KAP122 NC_031671.1 920607 923210 D AWJ20_4001 <920607..>923210 Sugiyamaella lignohabitans 30036086 AWJ20_4002 mRNA MAK32 NC_031671.1 923609 924694 R AWJ20_4002 complement(<923609..>924694) Sugiyamaella lignohabitans 30036087 AWJ20_4003 mRNA NUP116 NC_031671.1 925146 927719 R AWJ20_4003 complement(<925146..>927719) Sugiyamaella lignohabitans 30036088 AWJ20_4004 mRNA NUP116 NC_031671.1 927802 928641 R AWJ20_4004 complement(<927802..>928641) Sugiyamaella lignohabitans 30036089 AWJ20_4005 mRNA RAD27 NC_031671.1 929516 930553 D AWJ20_4005 <929516..>930553 Sugiyamaella lignohabitans 30036090 AWJ20_4006 mRNA APN1 NC_031671.1 931642 932619 D AWJ20_4006 <931642..>932619 Sugiyamaella lignohabitans 30036091 AWJ20_4007 mRNA AWJ20_4007 NC_031671.1 933560 935002 D AWJ20_4007 <933560..>935002 Sugiyamaella lignohabitans 30036092 AWJ20_4008 mRNA AWJ20_4008 NC_031671.1 937968 939551 D AWJ20_4008 <937968..>939551 Sugiyamaella lignohabitans 30036093 AWJ20_4009 mRNA YPR1 NC_031671.1 940062 940955 D AWJ20_4009 <940062..>940955 Sugiyamaella lignohabitans 30036094 AWJ20_4010 mRNA AWJ20_4010 NC_031671.1 941544 943850 D AWJ20_4010 <941544..>943850 Sugiyamaella lignohabitans 30036096 AWJ20_4011 mRNA RFA1 NC_031671.1 946717 948507 R AWJ20_4011 complement(<946717..>948507) Sugiyamaella lignohabitans 30036097 AWJ20_4012 mRNA AWJ20_4012 NC_031671.1 952156 954954 D AWJ20_4012 <952156..>954954 Sugiyamaella lignohabitans 30036098 AWJ20_4013 mRNA SAS10 NC_031671.1 970817 972613 D AWJ20_4013 <970817..>972613 Sugiyamaella lignohabitans 30036099 AWJ20_4014 mRNA AWJ20_4014 NC_031671.1 973080 973805 D AWJ20_4014 <973080..>973805 Sugiyamaella lignohabitans 30036100 AWJ20_4015 mRNA AIM2 NC_031671.1 976058 976879 D AWJ20_4015 join(<976058..976133,976176..>976879) Sugiyamaella lignohabitans 30036101 AWJ20_4016 mRNA mei2 NC_031671.1 977848 979965 D AWJ20_4016 <977848..>979965 Sugiyamaella lignohabitans 30036102 AWJ20_4017 mRNA HSL7 NC_031671.1 981659 983995 D AWJ20_4017 <981659..>983995 Sugiyamaella lignohabitans 30036103 AWJ20_4018 mRNA RRP5 NC_031671.1 990502 993891 R AWJ20_4018 complement(<990502..>993891) Sugiyamaella lignohabitans 30036104 AWJ20_4019 mRNA RRP5 NC_031671.1 994013 995830 R AWJ20_4019 complement(join(<994013..995530,995642..>995830)) Sugiyamaella lignohabitans 30036105 AWJ20_4020 mRNA MXR1 NC_031671.1 996712 997326 D AWJ20_4020 <996712..>997326 Sugiyamaella lignohabitans 30036107 AWJ20_4021 mRNA AWJ20_4021 NC_031671.1 999749 1000363 D AWJ20_4021 <999749..>1000363 Sugiyamaella lignohabitans 30036108 AWJ20_4022 mRNA AWJ20_4022 NC_031671.1 1001193 1002584 R AWJ20_4022 complement(<1001193..>1002584) Sugiyamaella lignohabitans 30036109 AWJ20_4023 mRNA AWJ20_4023 NC_031671.1 1004474 1007383 D AWJ20_4023 <1004474..>1007383 Sugiyamaella lignohabitans 30036110 AWJ20_4024 mRNA HXK2 NC_031671.1 1009856 1011643 D AWJ20_4024 <1009856..>1011643 Sugiyamaella lignohabitans 30036111 AWJ20_4025 mRNA MSS4 NC_031671.1 1013454 1015280 R AWJ20_4025 complement(<1013454..>1015280) Sugiyamaella lignohabitans 30036112 AWJ20_4026 mRNA AWJ20_4026 NC_031671.1 1030228 1031409 R AWJ20_4026 complement(<1030228..>1031409) Sugiyamaella lignohabitans 30036113 AWJ20_4027 mRNA AWJ20_4027 NC_031671.1 1032590 1033435 D AWJ20_4027 <1032590..>1033435 Sugiyamaella lignohabitans 30036114 AWJ20_4028 mRNA NOP7 NC_031671.1 1033650 1035482 R AWJ20_4028 complement(<1033650..>1035482) Sugiyamaella lignohabitans 30036115 AWJ20_4029 mRNA STL1 NC_031671.1 1038269 1039882 R AWJ20_4029 complement(<1038269..>1039882) Sugiyamaella lignohabitans 30036116 AWJ20_4030 mRNA SGA1 NC_031671.1 1042292 1043908 R AWJ20_4030 complement(<1042292..>1043908) Sugiyamaella lignohabitans 30036118 AWJ20_4031 mRNA ARK1 NC_031671.1 1046236 1049613 D AWJ20_4031 <1046236..>1049613 Sugiyamaella lignohabitans 30036119 AWJ20_4032 mRNA PCP1 NC_031671.1 1055708 1056874 D AWJ20_4032 <1055708..>1056874 Sugiyamaella lignohabitans 30036120 AWJ20_4033 mRNA MSS4 NC_031671.1 1069797 1072009 R AWJ20_4033 complement(join(<1069797..1071562,1071847..>1072009)) Sugiyamaella lignohabitans 30036121 AWJ20_4034 mRNA MSS4 NC_031671.1 1073340 1074926 R AWJ20_4034 complement(<1073340..>1074926) Sugiyamaella lignohabitans 30036122 AWJ20_4035 mRNA UBC6 NC_031671.1 1078022 1078540 R AWJ20_4035 complement(<1078022..>1078540) Sugiyamaella lignohabitans 30036123 AWJ20_4037 mRNA AWJ20_4037 NC_031671.1 1082163 1083047 R AWJ20_4037 complement(<1082163..>1083047) Sugiyamaella lignohabitans 30036125 AWJ20_4038 mRNA AWJ20_4038 NC_031671.1 1083338 1084726 D AWJ20_4038 <1083338..>1084726 Sugiyamaella lignohabitans 30036126 AWJ20_4039 mRNA UBX7 NC_031671.1 1084955 1086989 R AWJ20_4039 complement(join(<1084955..1086664,1086873..>1086989)) Sugiyamaella lignohabitans 30036127 AWJ20_4040 mRNA PDC1 NC_031671.1 1087593 1089275 R AWJ20_4040 complement(<1087593..>1089275) Sugiyamaella lignohabitans 30036129 AWJ20_4041 mRNA MSS4 NC_031671.1 1092052 1093860 R AWJ20_4041 complement(<1092052..>1093860) Sugiyamaella lignohabitans 30036130 AWJ20_4042 mRNA PMU1 NC_031671.1 1096481 1096882 R AWJ20_4042 complement(<1096481..>1096882) Sugiyamaella lignohabitans 30036131 AWJ20_4043 mRNA CDC5 NC_031671.1 1098756 1100837 D AWJ20_4043 <1098756..>1100837 Sugiyamaella lignohabitans 30036132 AWJ20_4044 mRNA SIN3 NC_031671.1 1104184 1104855 D AWJ20_4044 <1104184..>1104855 Sugiyamaella lignohabitans 30036133 AWJ20_4045 mRNA SIN3 NC_031671.1 1105161 1109414 D AWJ20_4045 <1105161..>1109414 Sugiyamaella lignohabitans 30036134 AWJ20_4046 mRNA PFA4 NC_031671.1 1112750 1113700 R AWJ20_4046 complement(<1112750..>1113700) Sugiyamaella lignohabitans 30036135 AWJ20_4047 mRNA ARG4 NC_031671.1 1114610 1116007 D AWJ20_4047 <1114610..>1116007 Sugiyamaella lignohabitans 30036136 AWJ20_4048 mRNA MSS4 NC_031671.1 1117079 1118902 D AWJ20_4048 <1117079..>1118902 Sugiyamaella lignohabitans 30036137 AWJ20_4049 mRNA AWJ20_4049 NC_031671.1 1120783 1121862 D AWJ20_4049 <1120783..>1121862 Sugiyamaella lignohabitans 30036138 AWJ20_4050 mRNA IME2 NC_031671.1 1124805 1126031 D AWJ20_4050 <1124805..>1126031 Sugiyamaella lignohabitans 30036140 AWJ20_4051 mRNA TEM1 NC_031671.1 1126288 1126947 R AWJ20_4051 complement(<1126288..>1126947) Sugiyamaella lignohabitans 30036141 AWJ20_4052 mRNA AWJ20_4052 NC_031671.1 1128006 1128641 D AWJ20_4052 <1128006..>1128641 Sugiyamaella lignohabitans 30036142 AWJ20_4053 mRNA ILV5 NC_031671.1 1131271 1132494 D AWJ20_4053 <1131271..>1132494 Sugiyamaella lignohabitans 30036143 AWJ20_4054 mRNA MSS4 NC_031671.1 1135285 1137090 D AWJ20_4054 <1135285..>1137090 Sugiyamaella lignohabitans 30036144 AWJ20_4055 mRNA ERB1 NC_031671.1 1138124 1140604 R AWJ20_4055 complement(<1138124..>1140604) Sugiyamaella lignohabitans 30036145 AWJ20_4056 mRNA HSH49 NC_031671.1 1141005 1141865 D AWJ20_4056 <1141005..>1141865 Sugiyamaella lignohabitans 30036146 AWJ20_4057 mRNA STE50 NC_031671.1 1142101 1143663 R AWJ20_4057 complement(<1142101..>1143663) Sugiyamaella lignohabitans 30036147 AWJ20_4058 mRNA AWJ20_4058 NC_031671.1 1148799 1151465 R AWJ20_4058 complement(<1148799..>1151465) Sugiyamaella lignohabitans 30036148 AWJ20_4059 mRNA AWJ20_4059 NC_031671.1 1152565 1153131 D AWJ20_4059 <1152565..>1153131 Sugiyamaella lignohabitans 30036149 AWJ20_4060 mRNA PSA1 NC_031671.1 1155794 1157035 R AWJ20_4060 complement(<1155794..>1157035) Sugiyamaella lignohabitans 30036151 AWJ20_4061 mRNA YME1 NC_031671.1 1160690 1162867 R AWJ20_4061 complement(<1160690..>1162867) Sugiyamaella lignohabitans 30036152 AWJ20_4062 mRNA AWJ20_4062 NC_031671.1 1161813 1162091 D AWJ20_4062 <1161813..>1162091 Sugiyamaella lignohabitans 30036153 AWJ20_4063 mRNA AWJ20_4063 NC_031671.1 1170305 1171174 R AWJ20_4063 complement(<1170305..>1171174) Sugiyamaella lignohabitans 30036154 AWJ20_4064 mRNA DMA2 NC_031671.1 1171610 1173238 R AWJ20_4064 complement(<1171610..>1173238) Sugiyamaella lignohabitans 30036155 AWJ20_4065 mRNA MLS1 NC_031671.1 1176319 1177995 D AWJ20_4065 <1176319..>1177995 Sugiyamaella lignohabitans 30036156 AWJ20_4066 mRNA OLA1 NC_031671.1 1179552 1180280 R AWJ20_4066 complement(<1179552..>1180280) Sugiyamaella lignohabitans 30036157 AWJ20_4067 mRNA AWJ20_4067 NC_031671.1 1181633 1182160 R AWJ20_4067 complement(<1181633..>1182160) Sugiyamaella lignohabitans 30036158 AWJ20_4068 mRNA AWJ20_4068 NC_031671.1 1182300 1182536 R AWJ20_4068 complement(<1182300..>1182536) Sugiyamaella lignohabitans 30036159 AWJ20_4069 mRNA OTU2 NC_031671.1 1183720 1184400 R AWJ20_4069 complement(<1183720..>1184400) Sugiyamaella lignohabitans 30036160 AWJ20_4070 mRNA AWJ20_4070 NC_031671.1 1185162 1187309 R AWJ20_4070 complement(<1185162..>1187309) Sugiyamaella lignohabitans 30036162 AWJ20_4071 mRNA AWJ20_4071 NC_031671.1 1192110 1194677 D AWJ20_4071 <1192110..>1194677 Sugiyamaella lignohabitans 30036163 AWJ20_4072 mRNA KRE6 NC_031671.1 1198660 1200927 D AWJ20_4072 <1198660..>1200927 Sugiyamaella lignohabitans 30036164 AWJ20_4073 mRNA NFU1 NC_031671.1 1201629 1202486 D AWJ20_4073 <1201629..>1202486 Sugiyamaella lignohabitans 30036165 AWJ20_4074 mRNA PAB1 NC_031671.1 1203033 1205888 R AWJ20_4074 complement(<1203033..>1205888) Sugiyamaella lignohabitans 30036166 AWJ20_4075 mRNA AWJ20_4075 NC_031671.1 1209025 1210143 D AWJ20_4075 <1209025..>1210143 Sugiyamaella lignohabitans 30036167 AWJ20_4076 mRNA SCS3 NC_031671.1 1211645 1213468 D AWJ20_4076 <1211645..>1213468 Sugiyamaella lignohabitans 30036168 AWJ20_4077 mRNA AWJ20_4077 NC_031671.1 1215404 1217140 D AWJ20_4077 <1215404..>1217140 Sugiyamaella lignohabitans 30036169 AWJ20_4078 mRNA RAD50 NC_031671.1 1217345 1220932 R AWJ20_4078 complement(<1217345..>1220932) Sugiyamaella lignohabitans 30036170 AWJ20_4079 mRNA AWJ20_4079 NC_031671.1 1225634 1228528 R AWJ20_4079 complement(<1225634..>1228528) Sugiyamaella lignohabitans 30036171 AWJ20_4080 mRNA CPD1 NC_031671.1 1230699 1231325 D AWJ20_4080 <1230699..>1231325 Sugiyamaella lignohabitans 30036173 AWJ20_4082 mRNA AWJ20_4082 NC_031671.1 1232891 1234750 D AWJ20_4082 <1232891..>1234750 Sugiyamaella lignohabitans 30036175 AWJ20_4083 mRNA PCD1 NC_031671.1 1234947 1235870 R AWJ20_4083 complement(<1234947..>1235870) Sugiyamaella lignohabitans 30036176 AWJ20_4084 mRNA AWJ20_4084 NC_031671.1 1237151 1238761 D AWJ20_4084 <1237151..>1238761 Sugiyamaella lignohabitans 30036177 AWJ20_4085 mRNA APM1 NC_031671.1 1238952 1240472 R AWJ20_4085 complement(<1238952..>1240472) Sugiyamaella lignohabitans 30036178 AWJ20_4086 mRNA MSS4 NC_031671.1 1243377 1245305 R AWJ20_4086 complement(join(<1243377..1245199,1245281..>1245305)) Sugiyamaella lignohabitans 30036179 AWJ20_4087 mRNA LEU1 NC_031671.1 1247586 1249883 D AWJ20_4087 <1247586..>1249883 Sugiyamaella lignohabitans 30036180 AWJ20_4088 mRNA AWJ20_4088 NC_031671.1 1250086 1252281 R AWJ20_4088 complement(<1250086..>1252281) Sugiyamaella lignohabitans 30036181 AWJ20_4089 mRNA CPR6 NC_031671.1 1254758 1255651 R AWJ20_4089 complement(<1254758..>1255651) Sugiyamaella lignohabitans 30036182 AWJ20_4090 mRNA MIF2 NC_031671.1 1256697 1257446 R AWJ20_4090 complement(<1256697..>1257446) Sugiyamaella lignohabitans 30036184 AWJ20_4091 mRNA CRD1 NC_031671.1 1258029 1259045 D AWJ20_4091 <1258029..>1259045 Sugiyamaella lignohabitans 30036185 AWJ20_4092 mRNA CCT4 NC_031671.1 1259270 1260904 R AWJ20_4092 complement(<1259270..>1260904) Sugiyamaella lignohabitans 30036186 AWJ20_4093 mRNA AWJ20_4093 NC_031671.1 1259382 1260035 D AWJ20_4093 <1259382..>1260035 Sugiyamaella lignohabitans 30036187 AWJ20_4094 mRNA CDC123 NC_031671.1 1261573 1262772 D AWJ20_4094 <1261573..>1262772 Sugiyamaella lignohabitans 30036188 AWJ20_4095 mRNA TIM17 NC_031671.1 1263486 1263962 D AWJ20_4095 <1263486..>1263962 Sugiyamaella lignohabitans 30036189 AWJ20_4096 mRNA AWJ20_4096 NC_031671.1 1263503 1263886 R AWJ20_4096 complement(<1263503..>1263886) Sugiyamaella lignohabitans 30036190 AWJ20_4097 mRNA AWJ20_4097 NC_031671.1 1264627 1266798 D AWJ20_4097 <1264627..>1266798 Sugiyamaella lignohabitans 30036191 AWJ20_4098 mRNA AWJ20_4098 NC_031671.1 1270742 1271377 D AWJ20_4098 <1270742..>1271377 Sugiyamaella lignohabitans 30036192 AWJ20_4099 mRNA AWJ20_4099 NC_031671.1 1271985 1272536 R AWJ20_4099 complement(<1271985..>1272536) Sugiyamaella lignohabitans 30036193 AWJ20_4100 mRNA TRM1 NC_031671.1 1272978 1274702 D AWJ20_4100 <1272978..>1274702 Sugiyamaella lignohabitans 30036196 AWJ20_4101 mRNA PUF4 NC_031671.1 1275145 1278597 R AWJ20_4101 complement(<1275145..>1278597) Sugiyamaella lignohabitans 30036197 AWJ20_4102 mRNA AWJ20_4102 NC_031671.1 1287534 1289027 R AWJ20_4102 complement(<1287534..>1289027) Sugiyamaella lignohabitans 30036198 AWJ20_4103 mRNA PMA1 NC_031671.1 1289652 1292459 R AWJ20_4103 complement(<1289652..>1292459) Sugiyamaella lignohabitans 30036199 AWJ20_4104 mRNA SAN1 NC_031671.1 1293140 1295671 R AWJ20_4104 complement(<1293140..>1295671) Sugiyamaella lignohabitans 30036200 AWJ20_4105 mRNA FCY1 NC_031671.1 1297314 1297706 R AWJ20_4105 complement(<1297314..>1297706) Sugiyamaella lignohabitans 30036201 AWJ20_4106 mRNA AMS1 NC_031671.1 1298237 1301596 R AWJ20_4106 complement(<1298237..>1301596) Sugiyamaella lignohabitans 30036202 AWJ20_4107 mRNA JLP1 NC_031671.1 1302377 1303492 R AWJ20_4107 complement(<1302377..>1303492) Sugiyamaella lignohabitans 30036203 AWJ20_4108 mRNA NUP170 NC_031671.1 1303922 1307581 R AWJ20_4108 complement(<1303922..>1307581) Sugiyamaella lignohabitans 30036204 AWJ20_4109 mRNA RIM21 NC_031671.1 1309183 1311084 D AWJ20_4109 <1309183..>1311084 Sugiyamaella lignohabitans 30036205 AWJ20_4110 mRNA AWJ20_4110 NC_031671.1 1311241 1311726 R AWJ20_4110 complement(<1311241..>1311726) Sugiyamaella lignohabitans 30036207 AWJ20_4111 mRNA ORC4 NC_031671.1 1311847 1312758 R AWJ20_4111 complement(<1311847..>1312758) Sugiyamaella lignohabitans 30036208 AWJ20_4112 mRNA AWJ20_4112 NC_031671.1 1312948 1314735 D AWJ20_4112 <1312948..>1314735 Sugiyamaella lignohabitans 30036209 AWJ20_4113 mRNA AWJ20_4113 NC_031671.1 1314842 1315777 R AWJ20_4113 complement(<1314842..>1315777) Sugiyamaella lignohabitans 30036210 AWJ20_4114 mRNA PEX7 NC_031671.1 1316743 1317897 D AWJ20_4114 <1316743..>1317897 Sugiyamaella lignohabitans 30036211 AWJ20_4115 mRNA SPE3 NC_031671.1 1319321 1319977 D AWJ20_4115 <1319321..>1319977 Sugiyamaella lignohabitans 30036212 AWJ20_4116 mRNA CIT1 NC_031671.1 1324349 1325254 D AWJ20_4116 <1324349..>1325254 Sugiyamaella lignohabitans 30036213 AWJ20_4117 mRNA AWJ20_4117 NC_031671.1 1326740 1327636 R AWJ20_4117 complement(<1326740..>1327636) Sugiyamaella lignohabitans 30036214 AWJ20_4118 mRNA ILS1 NC_031671.1 1332449 1335502 R AWJ20_4118 complement(<1332449..>1335502) Sugiyamaella lignohabitans 30036215 AWJ20_4119 mRNA AWJ20_4119 NC_031671.1 1336438 1338888 R AWJ20_4119 complement(<1336438..>1338888) Sugiyamaella lignohabitans 30036216 AWJ20_4120 mRNA DOP1 NC_031671.1 1347097 1352190 D AWJ20_4120 <1347097..>1352190 Sugiyamaella lignohabitans 30036218 AWJ20_4121 mRNA MTQ2 NC_031671.1 1352554 1353240 R AWJ20_4121 complement(<1352554..>1353240) Sugiyamaella lignohabitans 30036219 AWJ20_4122 mRNA CLF1 NC_031671.1 1354688 1356763 D AWJ20_4122 <1354688..>1356763 Sugiyamaella lignohabitans 30036220 AWJ20_4123 mRNA MSL5 NC_031671.1 1356988 1358946 R AWJ20_4123 complement(<1356988..>1358946) Sugiyamaella lignohabitans 30036221 AWJ20_4124 mRNA AWJ20_4124 NC_031671.1 1360872 1363469 R AWJ20_4124 complement(<1360872..>1363469) Sugiyamaella lignohabitans 30036222 AWJ20_4125 mRNA AIM14 NC_031671.1 1364083 1366059 R AWJ20_4125 complement(<1364083..>1366059) Sugiyamaella lignohabitans 30036223 AWJ20_4126 mRNA AWJ20_4126 NC_031671.1 1366833 1367672 R AWJ20_4126 complement(<1366833..>1367672) Sugiyamaella lignohabitans 30036224 AWJ20_4127 mRNA CFT2 NC_031671.1 1367969 1370653 R AWJ20_4127 complement(<1367969..>1370653) Sugiyamaella lignohabitans 30036225 AWJ20_4128 mRNA OYE3 NC_031671.1 1372690 1373892 R AWJ20_4128 complement(join(<1372690..1373263,1373360..>1373892)) Sugiyamaella lignohabitans 30036226 AWJ20_4129 mRNA AWJ20_4129 NC_031671.1 1374746 1375558 D AWJ20_4129 <1374746..>1375558 Sugiyamaella lignohabitans 30036227 AWJ20_4130 mRNA AWJ20_4130 NC_031671.1 1376241 1377467 D AWJ20_4130 <1376241..>1377467 Sugiyamaella lignohabitans 30036229 AWJ20_4131 mRNA MGM1 NC_031671.1 1378147 1381095 R AWJ20_4131 complement(<1378147..>1381095) Sugiyamaella lignohabitans 30036230 AWJ20_4132 mRNA AWJ20_4132 NC_031671.1 1382685 1384100 D AWJ20_4132 <1382685..>1384100 Sugiyamaella lignohabitans 30036231 AWJ20_4133 mRNA GSY1 NC_031671.1 1386707 1388764 D AWJ20_4133 <1386707..>1388764 Sugiyamaella lignohabitans 30036232 AWJ20_4135 mRNA AWJ20_4135 NC_031671.1 1396034 1396909 D AWJ20_4135 <1396034..>1396909 Sugiyamaella lignohabitans 30036234 AWJ20_4136 mRNA YHM2 NC_031671.1 1398757 1399701 D AWJ20_4136 <1398757..>1399701 Sugiyamaella lignohabitans 30036235 AWJ20_4137 mRNA ATP10 NC_031671.1 1399906 1400814 R AWJ20_4137 complement(<1399906..>1400814) Sugiyamaella lignohabitans 30036236 AWJ20_4138 mRNA SGS1 NC_031671.1 1404245 1405591 D AWJ20_4138 <1404245..>1405591 Sugiyamaella lignohabitans 30036237 AWJ20_4139 mRNA LOS1 NC_031671.1 1406419 1409358 R AWJ20_4139 complement(<1406419..>1409358) Sugiyamaella lignohabitans 30036238 AWJ20_4140 mRNA DPH5 NC_031671.1 1411712 1412611 D AWJ20_4140 <1411712..>1412611 Sugiyamaella lignohabitans 30036240 AWJ20_4141 mRNA MRPL40 NC_031671.1 1412876 1413778 R AWJ20_4141 complement(<1412876..>1413778) Sugiyamaella lignohabitans 30036241 AWJ20_4142 mRNA AWJ20_4142 NC_031671.1 1414333 1416297 D AWJ20_4142 <1414333..>1416297 Sugiyamaella lignohabitans 30036242 AWJ20_4143 mRNA ILV6 NC_031671.1 1416983 1417936 R AWJ20_4143 complement(<1416983..>1417936) Sugiyamaella lignohabitans 30036243 AWJ20_4144 mRNA AWJ20_4144 NC_031671.1 1425014 1425928 R AWJ20_4144 complement(<1425014..>1425928) Sugiyamaella lignohabitans 30036244 AWJ20_4145 mRNA AWJ20_4145 NC_031671.1 1427357 1428469 D AWJ20_4145 <1427357..>1428469 Sugiyamaella lignohabitans 30036245 AWJ20_4146 mRNA SRP1 NC_031671.1 1429049 1430683 R AWJ20_4146 complement(<1429049..>1430683) Sugiyamaella lignohabitans 30036246 AWJ20_4148 mRNA SSA3 NC_031671.1 1434267 1436228 D AWJ20_4148 <1434267..>1436228 Sugiyamaella lignohabitans 30036248 AWJ20_4149 mRNA GST1 NC_031671.1 1437211 1437855 D AWJ20_4149 <1437211..>1437855 Sugiyamaella lignohabitans 30036249 AWJ20_4150 mRNA PMR1 NC_031671.1 1438159 1441302 R AWJ20_4150 complement(<1438159..>1441302) Sugiyamaella lignohabitans 30036251 AWJ20_4151 mRNA RNT1 NC_031671.1 1445320 1446903 R AWJ20_4151 complement(<1445320..>1446903) Sugiyamaella lignohabitans 30036252 AWJ20_4152 mRNA AWJ20_4152 NC_031671.1 1447379 1448014 D AWJ20_4152 <1447379..>1448014 Sugiyamaella lignohabitans 30036253 AWJ20_4153 mRNA CUS1 NC_031671.1 1448080 1449990 R AWJ20_4153 complement(<1448080..>1449990) Sugiyamaella lignohabitans 30036254 AWJ20_4154 mRNA RRG7 NC_031671.1 1452400 1453398 D AWJ20_4154 <1452400..>1453398 Sugiyamaella lignohabitans 30036255 AWJ20_4155 mRNA AAF1 NC_031671.1 1454121 1455590 R AWJ20_4155 complement(<1454121..>1455590) Sugiyamaella lignohabitans 30036256 AWJ20_4156 mRNA UBA2 NC_031671.1 1460556 1462088 D AWJ20_4156 <1460556..>1462088 Sugiyamaella lignohabitans 30036257 AWJ20_4157 mRNA GAA1 NC_031671.1 1462299 1464053 R AWJ20_4157 complement(<1462299..>1464053) Sugiyamaella lignohabitans 30036258 AWJ20_4158 mRNA AWJ20_4158 NC_031671.1 1465423 1465950 D AWJ20_4158 <1465423..>1465950 Sugiyamaella lignohabitans 30036259 AWJ20_4159 mRNA VPS17 NC_031671.1 1466276 1468165 R AWJ20_4159 complement(<1466276..>1468165) Sugiyamaella lignohabitans 30036260 AWJ20_4160 mRNA AWJ20_4160 NC_031671.1 1468843 1470993 R AWJ20_4160 complement(<1468843..>1470993) Sugiyamaella lignohabitans 30036262 AWJ20_4161 mRNA NPL6 NC_031671.1 1472082 1474418 D AWJ20_4161 <1472082..>1474418 Sugiyamaella lignohabitans 30036263 AWJ20_4162 mRNA AWJ20_4162 NC_031671.1 1475446 1476018 D AWJ20_4162 <1475446..>1476018 Sugiyamaella lignohabitans 30036264 AWJ20_4163 mRNA YOR1 NC_031671.1 1476588 1480496 R AWJ20_4163 complement(<1476588..>1480496) Sugiyamaella lignohabitans 30036265 AWJ20_4164 mRNA AWJ20_4164 NC_031671.1 1486231 1487604 D AWJ20_4164 <1486231..>1487604 Sugiyamaella lignohabitans 30036266 AWJ20_4165 mRNA AWJ20_4165 NC_031671.1 1487990 1489969 D AWJ20_4165 <1487990..>1489969 Sugiyamaella lignohabitans 30036267 AWJ20_4166 mRNA AWJ20_4166 NC_031671.1 1490178 1490930 R AWJ20_4166 complement(<1490178..>1490930) Sugiyamaella lignohabitans 30036268 AWJ20_4167 mRNA FRE5 NC_031671.1 1492457 1493227 R AWJ20_4167 complement(<1492457..>1493227) Sugiyamaella lignohabitans 30036269 AWJ20_4168 mRNA FMS1 NC_031671.1 1495214 1496527 D AWJ20_4168 <1495214..>1496527 Sugiyamaella lignohabitans 30036270 AWJ20_4169 mRNA AAH1 NC_031671.1 1496890 1497945 D AWJ20_4169 <1496890..>1497945 Sugiyamaella lignohabitans 30036271 AWJ20_4170 mRNA DSE4 NC_031671.1 1498159 1500495 R AWJ20_4170 complement(<1498159..>1500495) Sugiyamaella lignohabitans 30036273 AWJ20_4171 mRNA ITR2 NC_031671.1 1501640 1503223 D AWJ20_4171 <1501640..>1503223 Sugiyamaella lignohabitans 30036274 AWJ20_4172 mRNA AWJ20_4172 NC_031671.1 1504609 1505151 R AWJ20_4172 complement(<1504609..>1505151) Sugiyamaella lignohabitans 30036275 AWJ20_4173 mRNA AWJ20_4173 NC_031671.1 1505987 1506469 D AWJ20_4173 <1505987..>1506469 Sugiyamaella lignohabitans 30036276 AWJ20_4174 mRNA AWJ20_4174 NC_031671.1 1506713 1507192 D AWJ20_4174 <1506713..>1507192 Sugiyamaella lignohabitans 30036277 AWJ20_4175 mRNA TLG1 NC_031671.1 1507616 1508338 D AWJ20_4175 <1507616..>1508338 Sugiyamaella lignohabitans 30036278 AWJ20_4176 mRNA TDA3 NC_031671.1 1509559 1511221 D AWJ20_4176 join(<1509559..1509592,1509942..>1511221) Sugiyamaella lignohabitans 30036279 AWJ20_4177 mRNA YEN1 NC_031671.1 1511744 1513945 D AWJ20_4177 <1511744..>1513945 Sugiyamaella lignohabitans 30036280 AWJ20_4178 mRNA PKH2 NC_031671.1 1514140 1517022 R AWJ20_4178 complement(<1514140..>1517022) Sugiyamaella lignohabitans 30036281 AWJ20_4182 mRNA PRC1 NC_031671.1 1522443 1524062 R AWJ20_4182 complement(<1522443..>1524062) Sugiyamaella lignohabitans 30036286 AWJ20_4183 mRNA WSS1 NC_031671.1 1524537 1525598 R AWJ20_4183 complement(<1524537..>1525598) Sugiyamaella lignohabitans 30036287 AWJ20_4184 mRNA ESP1 NC_031671.1 1526916 1531667 D AWJ20_4184 <1526916..>1531667 Sugiyamaella lignohabitans 30036288 AWJ20_4185 mRNA AWJ20_4185 NC_031671.1 1533011 1533751 D AWJ20_4185 <1533011..>1533751 Sugiyamaella lignohabitans 30036289 AWJ20_4186 mRNA NNF2 NC_031671.1 1533937 1536861 R AWJ20_4186 complement(<1533937..>1536861) Sugiyamaella lignohabitans 30036290 AWJ20_4187 mRNA MRI1 NC_031671.1 1538362 1539468 D AWJ20_4187 <1538362..>1539468 Sugiyamaella lignohabitans 30036291 AWJ20_4188 mRNA MNN2 NC_031671.1 1539663 1541465 R AWJ20_4188 complement(<1539663..>1541465) Sugiyamaella lignohabitans 30036292 AWJ20_4189 mRNA PFS2 NC_031671.1 1543032 1544435 D AWJ20_4189 <1543032..>1544435 Sugiyamaella lignohabitans 30036293 AWJ20_4190 mRNA SEY1 NC_031671.1 1544617 1547094 R AWJ20_4190 complement(<1544617..>1547094) Sugiyamaella lignohabitans 30036295 AWJ20_4191 mRNA SYG1 NC_031671.1 1547054 1551624 D AWJ20_4191 join(<1547054..1547227,1548541..>1551624) Sugiyamaella lignohabitans 30036296 AWJ20_4192 mRNA BGL7 NC_031671.1 1551661 1553379 R AWJ20_4192 complement(<1551661..>1553379) Sugiyamaella lignohabitans 30036297 AWJ20_4193 mRNA AWJ20_4193 NC_031671.1 1553632 1554654 D AWJ20_4193 <1553632..>1554654 Sugiyamaella lignohabitans 30036298 AWJ20_4194 mRNA NEO1 NC_031671.1 1554707 1558006 R AWJ20_4194 complement(<1554707..>1558006) Sugiyamaella lignohabitans 30036299 AWJ20_4195 mRNA MED4 NC_031671.1 1558693 1559688 D AWJ20_4195 <1558693..>1559688 Sugiyamaella lignohabitans 30036300 AWJ20_4196 mRNA AWJ20_4196 NC_031671.1 1560132 1560809 D AWJ20_4196 <1560132..>1560809 Sugiyamaella lignohabitans 30036301 AWJ20_4197 mRNA AWJ20_4197 NC_031671.1 1561016 1561906 R AWJ20_4197 complement(<1561016..>1561906) Sugiyamaella lignohabitans 30036302 AWJ20_4198 mRNA TIM23 NC_031671.1 1563974 1564591 R AWJ20_4198 complement(<1563974..>1564591) Sugiyamaella lignohabitans 30036303 AWJ20_4199 mRNA ECM38 NC_031671.1 1565329 1567344 R AWJ20_4199 complement(<1565329..>1567344) Sugiyamaella lignohabitans 30036304 AWJ20_4200 mRNA FKS1 NC_031671.1 1568266 1574097 R AWJ20_4200 complement(<1568266..>1574097) Sugiyamaella lignohabitans 30036307 AWJ20_4201 mRNA GAS1 NC_031671.1 1577995 1579653 D AWJ20_4201 <1577995..>1579653 Sugiyamaella lignohabitans 30036308 AWJ20_4202 mRNA AWJ20_4202 NC_031671.1 1580570 1581457 R AWJ20_4202 complement(<1580570..>1581457) Sugiyamaella lignohabitans 30036309 AWJ20_4203 mRNA PSE1 NC_031671.1 1581844 1585425 R AWJ20_4203 complement(join(<1581844..1584915,1585252..>1585425)) Sugiyamaella lignohabitans 30036310 AWJ20_4204 mRNA CNB1 NC_031671.1 1592737 1593171 R AWJ20_4204 complement(<1592737..>1593171) Sugiyamaella lignohabitans 30036311 AWJ20_4205 mRNA HHF2 NC_031671.1 1596925 1597236 R AWJ20_4205 complement(<1596925..>1597236) Sugiyamaella lignohabitans 30036312 AWJ20_4206 mRNA UBP8 NC_031671.1 1599228 1601102 D AWJ20_4206 <1599228..>1601102 Sugiyamaella lignohabitans 30036313 AWJ20_4207 mRNA AWJ20_4207 NC_031671.1 1602457 1603854 D AWJ20_4207 <1602457..>1603854 Sugiyamaella lignohabitans 30036314 AWJ20_4208 mRNA AWJ20_4208 NC_031671.1 1605309 1606484 R AWJ20_4208 complement(<1605309..>1606484) Sugiyamaella lignohabitans 30036315 AWJ20_4209 mRNA OTU1 NC_031671.1 1607828 1608829 D AWJ20_4209 <1607828..>1608829 Sugiyamaella lignohabitans 30036316 AWJ20_4210 mRNA BUD20 NC_031671.1 1609145 1609600 R AWJ20_4210 complement(<1609145..>1609600) Sugiyamaella lignohabitans 30036318 AWJ20_4211 mRNA PLP2 NC_031671.1 1611582 1612292 R AWJ20_4211 complement(<1611582..>1612292) Sugiyamaella lignohabitans 30036319 AWJ20_4212 mRNA LEU3 NC_031671.1 1613376 1615985 D AWJ20_4212 <1613376..>1615985 Sugiyamaella lignohabitans 30036320 AWJ20_4213 mRNA AQY1 NC_031671.1 1622359 1623210 D AWJ20_4213 <1622359..>1623210 Sugiyamaella lignohabitans 30036321 AWJ20_4214 mRNA AWJ20_4214 NC_031671.1 1623955 1624545 D AWJ20_4214 <1623955..>1624545 Sugiyamaella lignohabitans 30036322 AWJ20_4216 mRNA CRZ1 NC_031671.1 1628542 1630761 D AWJ20_4216 <1628542..>1630761 Sugiyamaella lignohabitans 30036324 AWJ20_4217 mRNA TRM12 NC_031671.1 1630997 1632346 R AWJ20_4217 complement(<1630997..>1632346) Sugiyamaella lignohabitans 30036325 AWJ20_4218 mRNA SOK2 NC_031671.1 1639114 1640703 R AWJ20_4218 complement(<1639114..>1640703) Sugiyamaella lignohabitans 30036326 AWJ20_4219 mRNA RBA50 NC_031671.1 1646809 1648131 R AWJ20_4219 complement(<1646809..>1648131) Sugiyamaella lignohabitans 30036327 AWJ20_4220 mRNA AWJ20_4220 NC_031671.1 1651905 1653509 D AWJ20_4220 <1651905..>1653509 Sugiyamaella lignohabitans 30036329 AWJ20_4221 mRNA AWJ20_4221 NC_031671.1 1657305 1658654 D AWJ20_4221 <1657305..>1658654 Sugiyamaella lignohabitans 30036330 AWJ20_4222 mRNA ORC2 NC_031671.1 1658853 1660541 R AWJ20_4222 complement(<1658853..>1660541) Sugiyamaella lignohabitans 30036331 AWJ20_4223 mRNA THI4 NC_031671.1 1661453 1662412 R AWJ20_4223 complement(<1661453..>1662412) Sugiyamaella lignohabitans 30036332 AWJ20_4224 mRNA AWJ20_4224 NC_031671.1 1663753 1665657 R AWJ20_4224 complement(<1663753..>1665657) Sugiyamaella lignohabitans 30036333 AWJ20_4225 mRNA AWJ20_4225 NC_031671.1 1668113 1668934 D AWJ20_4225 <1668113..>1668934 Sugiyamaella lignohabitans 30036334 AWJ20_4226 mRNA SMC1 NC_031671.1 1672813 1676532 R AWJ20_4226 complement(<1672813..>1676532) Sugiyamaella lignohabitans 30036335 AWJ20_4227 mRNA JLP1 NC_031671.1 1679683 1680840 D AWJ20_4227 <1679683..>1680840 Sugiyamaella lignohabitans 30036336 AWJ20_4228 mRNA PLB3 NC_031671.1 1680897 1682660 R AWJ20_4228 complement(<1680897..>1682660) Sugiyamaella lignohabitans 30036337 AWJ20_4229 mRNA STP2 NC_031671.1 1683109 1685295 R AWJ20_4229 complement(<1683109..>1685295) Sugiyamaella lignohabitans 30036338 AWJ20_4230 mRNA YMD8 NC_031671.1 1690464 1692017 R AWJ20_4230 complement(<1690464..>1692017) Sugiyamaella lignohabitans 30036340 AWJ20_4231 mRNA YPS7 NC_031671.1 1693232 1695415 D AWJ20_4231 <1693232..>1695415 Sugiyamaella lignohabitans 30036341 AWJ20_4232 mRNA AWJ20_4232 NC_031671.1 1695722 1696063 R AWJ20_4232 complement(<1695722..>1696063) Sugiyamaella lignohabitans 30036342 AWJ20_4233 mRNA UGA4 NC_031671.1 1700817 1702451 D AWJ20_4233 <1700817..>1702451 Sugiyamaella lignohabitans 30036343 AWJ20_4234 mRNA FLC2 NC_031671.1 1702787 1705123 R AWJ20_4234 complement(<1702787..>1705123) Sugiyamaella lignohabitans 30036344 AWJ20_4235 mRNA CAR2 NC_031671.1 1707353 1708639 R AWJ20_4235 complement(<1707353..>1708639) Sugiyamaella lignohabitans 30036345 AWJ20_4236 mRNA AWJ20_4236 NC_031671.1 1709771 1711237 R AWJ20_4236 complement(<1709771..>1711237) Sugiyamaella lignohabitans 30036346 AWJ20_4237 mRNA BST1 NC_031671.1 1714370 1717405 D AWJ20_4237 <1714370..>1717405 Sugiyamaella lignohabitans 30036347 AWJ20_4238 mRNA AWJ20_4238 NC_031671.1 1718452 1720752 R AWJ20_4238 complement(<1718452..>1720752) Sugiyamaella lignohabitans 30036348 AWJ20_4239 mRNA SLN1 NC_031671.1 1725799 1729281 D AWJ20_4239 <1725799..>1729281 Sugiyamaella lignohabitans 30036349 AWJ20_4240 mRNA FLR1 NC_031671.1 1730246 1731907 D AWJ20_4240 <1730246..>1731907 Sugiyamaella lignohabitans 30036351 AWJ20_4241 mRNA AWJ20_4241 NC_031671.1 1732253 1733298 D AWJ20_4241 join(<1732253..1732340,1732427..>1733298) Sugiyamaella lignohabitans 30036352 AWJ20_4242 mRNA MCP2 NC_031671.1 1733361 1735283 R AWJ20_4242 complement(<1733361..>1735283) Sugiyamaella lignohabitans 30036353 AWJ20_4243 mRNA KTR2 NC_031671.1 1735835 1736410 D AWJ20_4243 <1735835..>1736410 Sugiyamaella lignohabitans 30036354 AWJ20_4244 mRNA RPB4 NC_031671.1 1738238 1738528 R AWJ20_4244 complement(<1738238..>1738528) Sugiyamaella lignohabitans 30036355 AWJ20_4245 mRNA AWJ20_4245 NC_031671.1 1739532 1740448 D AWJ20_4245 join(<1739532..1739534,1739864..1740014,1740279..>1740448) Sugiyamaella lignohabitans 30036356 AWJ20_4246 mRNA PNC1 NC_031671.1 1740670 1741362 R AWJ20_4246 complement(<1740670..>1741362) Sugiyamaella lignohabitans 30036357 AWJ20_4247 mRNA KAE1 NC_031671.1 1741931 1742560 D AWJ20_4247 <1741931..>1742560 Sugiyamaella lignohabitans 30036358 AWJ20_4248 mRNA SEC20 NC_031671.1 1743369 1744427 R AWJ20_4248 complement(<1743369..>1744427) Sugiyamaella lignohabitans 30036359 AWJ20_4249 mRNA AWJ20_4249 NC_031671.1 1744856 1745443 D AWJ20_4249 <1744856..>1745443 Sugiyamaella lignohabitans 30036360 AWJ20_4250 mRNA AWJ20_4250 NC_031671.1 1745659 1747257 R AWJ20_4250 complement(<1745659..>1747257) Sugiyamaella lignohabitans 30036362 AWJ20_4251 mRNA AWJ20_4251 NC_031671.1 1747651 1748736 R AWJ20_4251 complement(<1747651..>1748736) Sugiyamaella lignohabitans 30036363 AWJ20_4252 mRNA AWJ20_4252 NC_031671.1 1751242 1752807 R AWJ20_4252 complement(<1751242..>1752807) Sugiyamaella lignohabitans 30036364 AWJ20_4253 mRNA AWJ20_4253 NC_031671.1 1756225 1759047 R AWJ20_4253 complement(<1756225..>1759047) Sugiyamaella lignohabitans 30036365 AWJ20_4254 mRNA AWJ20_4254 NC_031671.1 1760200 1763013 D AWJ20_4254 <1760200..>1763013 Sugiyamaella lignohabitans 30036366 AWJ20_4255 mRNA MDV1 NC_031671.1 1765173 1767200 D AWJ20_4255 <1765173..>1767200 Sugiyamaella lignohabitans 30036367 AWJ20_4257 mRNA AWJ20_4257 NC_031671.1 1768460 1768681 R AWJ20_4257 complement(<1768460..>1768681) Sugiyamaella lignohabitans 30036369 AWJ20_4258 mRNA CCT7 NC_031671.1 1769042 1770712 R AWJ20_4258 complement(<1769042..>1770712) Sugiyamaella lignohabitans 30036370 AWJ20_4259 mRNA UTP30 NC_031671.1 1775737 1776546 R AWJ20_4259 complement(<1775737..>1776546) Sugiyamaella lignohabitans 30036371 AWJ20_4260 mRNA HSM3 NC_031671.1 1777339 1778802 D AWJ20_4260 <1777339..>1778802 Sugiyamaella lignohabitans 30036373 AWJ20_4261 mRNA IPI3 NC_031671.1 1778938 1780374 R AWJ20_4261 complement(<1778938..>1780374) Sugiyamaella lignohabitans 30036374 AWJ20_4262 mRNA AWJ20_4262 NC_031671.1 1780863 1782143 D AWJ20_4262 <1780863..>1782143 Sugiyamaella lignohabitans 30036375 AWJ20_4263 mRNA MTR4 NC_031671.1 1782361 1785597 R AWJ20_4263 complement(<1782361..>1785597) Sugiyamaella lignohabitans 30036376 AWJ20_4264 mRNA NPR1 NC_031671.1 1790754 1792460 D AWJ20_4264 <1790754..>1792460 Sugiyamaella lignohabitans 30036377 AWJ20_4265 mRNA AWJ20_4265 NC_031671.1 1793607 1794617 R AWJ20_4265 complement(<1793607..>1794617) Sugiyamaella lignohabitans 30036378 AWJ20_4266 mRNA MRPL19 NC_031671.1 1795887 1796267 R AWJ20_4266 complement(<1795887..>1796267) Sugiyamaella lignohabitans 30036379 AWJ20_4267 mRNA SHM1 NC_031671.1 1797261 1798520 D AWJ20_4267 <1797261..>1798520 Sugiyamaella lignohabitans 30036380 AWJ20_4269 mRNA AWJ20_4269 NC_031671.1 1800472 1803603 D AWJ20_4269 <1800472..>1803603 Sugiyamaella lignohabitans 30036382 AWJ20_4270 mRNA TIM54 NC_031671.1 1804267 1805694 D AWJ20_4270 <1804267..>1805694 Sugiyamaella lignohabitans 30036384 AWJ20_4271 mRNA UBP10 NC_031671.1 1805921 1808173 R AWJ20_4271 complement(<1805921..>1808173) Sugiyamaella lignohabitans 30036385 AWJ20_4272 mRNA SPB1 NC_031671.1 1808691 1811231 R AWJ20_4272 complement(<1808691..>1811231) Sugiyamaella lignohabitans 30036386 AWJ20_4273 mRNA AWJ20_4273 NC_031671.1 1819969 1821513 D AWJ20_4273 <1819969..>1821513 Sugiyamaella lignohabitans 30036387 AWJ20_4274 mRNA CYC1 NC_031671.1 1822390 1822710 D AWJ20_4274 <1822390..>1822710 Sugiyamaella lignohabitans 30036388 AWJ20_4275 mRNA SSY1 NC_031671.1 1824146 1827307 D AWJ20_4275 <1824146..>1827307 Sugiyamaella lignohabitans 30036389 AWJ20_4276 mRNA ISY1 NC_031671.1 1827573 1828286 R AWJ20_4276 complement(<1827573..>1828286) Sugiyamaella lignohabitans 30036390 AWJ20_4277 mRNA AWJ20_4277 NC_031671.1 1829521 1831113 D AWJ20_4277 <1829521..>1831113 Sugiyamaella lignohabitans 30036391 AWJ20_4278 mRNA SCW11 NC_031671.1 1832739 1834244 D AWJ20_4278 <1832739..>1834244 Sugiyamaella lignohabitans 30036392 AWJ20_4279 mRNA AWJ20_4279 NC_031671.1 1834532 1834849 R AWJ20_4279 complement(<1834532..>1834849) Sugiyamaella lignohabitans 30036393 AWJ20_4280 mRNA AWJ20_4280 NC_031671.1 1834976 1835692 R AWJ20_4280 complement(<1834976..>1835692) Sugiyamaella lignohabitans 30036395 AWJ20_4281 mRNA YPS1 NC_031671.1 1838549 1839943 D AWJ20_4281 <1838549..>1839943 Sugiyamaella lignohabitans 30036396 AWJ20_4282 mRNA CYT1 NC_031671.1 1840288 1841031 R AWJ20_4282 complement(<1840288..>1841031) Sugiyamaella lignohabitans 30036397 AWJ20_4283 mRNA INP51 NC_031671.1 1849212 1852604 D AWJ20_4283 <1849212..>1852604 Sugiyamaella lignohabitans 30036398 AWJ20_4284 mRNA AWJ20_4284 NC_031671.1 1853650 1856451 R AWJ20_4284 complement(<1853650..>1856451) Sugiyamaella lignohabitans 30036399 AWJ20_4285 mRNA AWJ20_4285 NC_031671.1 1862103 1864394 D AWJ20_4285 <1862103..>1864394 Sugiyamaella lignohabitans 30036400 AWJ20_4286 mRNA TRZ1 NC_031671.1 1865520 1867772 R AWJ20_4286 complement(<1865520..>1867772) Sugiyamaella lignohabitans 30036401 AWJ20_4287 mRNA AWJ20_4287 NC_031671.1 1869437 1872109 D AWJ20_4287 <1869437..>1872109 Sugiyamaella lignohabitans 30036402 AWJ20_4288 mRNA AWJ20_4288 NC_031671.1 1873480 1873869 D AWJ20_4288 <1873480..>1873869 Sugiyamaella lignohabitans 30036403 AWJ20_4289 mRNA BRR6 NC_031671.1 1886235 1888196 D AWJ20_4289 <1886235..>1888196 Sugiyamaella lignohabitans 30036404 AWJ20_4290 mRNA RAI1 NC_031671.1 1889251 1889799 R AWJ20_4290 complement(<1889251..>1889799) Sugiyamaella lignohabitans 30036406 AWJ20_4291 mRNA VPS5 NC_031671.1 1890208 1892316 D AWJ20_4291 <1890208..>1892316 Sugiyamaella lignohabitans 30036407 AWJ20_4292 mRNA MAK10 NC_031671.1 1893516 1895558 R AWJ20_4292 complement(<1893516..>1895558) Sugiyamaella lignohabitans 30036408 AWJ20_4293 mRNA VPS1 NC_031671.1 1896697 1900322 R AWJ20_4293 complement(join(<1896697..1898820,1899621..>1900322)) Sugiyamaella lignohabitans 30036409 AWJ20_4294 mRNA SPS19 NC_031671.1 1902469 1903350 D AWJ20_4294 <1902469..>1903350 Sugiyamaella lignohabitans 30036410 AWJ20_4295 mRNA YPQ2 NC_031671.1 1905497 1906714 D AWJ20_4295 <1905497..>1906714 Sugiyamaella lignohabitans 30036411 AWJ20_4296 mRNA PAP1 NC_031671.1 1907089 1908690 D AWJ20_4296 <1907089..>1908690 Sugiyamaella lignohabitans 30036412 AWJ20_4297 mRNA RKM4 NC_031671.1 1909221 1910666 R AWJ20_4297 complement(<1909221..>1910666) Sugiyamaella lignohabitans 30036413 AWJ20_4298 mRNA HAT2 NC_031671.1 1911078 1912403 D AWJ20_4298 <1911078..>1912403 Sugiyamaella lignohabitans 30036414 AWJ20_4299 mRNA AWJ20_4299 NC_031671.1 1912854 1913720 D AWJ20_4299 <1912854..>1913720 Sugiyamaella lignohabitans 30036415 AWJ20_4300 mRNA NMD5 NC_031671.1 1913902 1917126 R AWJ20_4300 complement(<1913902..>1917126) Sugiyamaella lignohabitans 30036418 AWJ20_4301 mRNA IAH1 NC_031671.1 1918215 1918988 D AWJ20_4301 <1918215..>1918988 Sugiyamaella lignohabitans 30036419 AWJ20_4302 mRNA AWJ20_4302 NC_031671.1 1920775 1921500 D AWJ20_4302 <1920775..>1921500 Sugiyamaella lignohabitans 30036420 AWJ20_4303 mRNA AWJ20_4303 NC_031671.1 1921755 1922717 R AWJ20_4303 complement(<1921755..>1922717) Sugiyamaella lignohabitans 30036421 AWJ20_4307 mRNA PRM1 NC_031671.1 1927292 1929343 R AWJ20_4307 complement(<1927292..>1929343) Sugiyamaella lignohabitans 30036425 AWJ20_4308 mRNA ATM1 NC_031671.1 1929934 1932174 R AWJ20_4308 complement(<1929934..>1932174) Sugiyamaella lignohabitans 30036426 AWJ20_4309 mRNA AWJ20_4309 NC_031671.1 1932833 1933690 R AWJ20_4309 complement(<1932833..>1933690) Sugiyamaella lignohabitans 30036427 AWJ20_4310 mRNA DNF3 NC_031671.1 1934204 1938676 R AWJ20_4310 complement(<1934204..>1938676) Sugiyamaella lignohabitans 30036429 AWJ20_4311 mRNA AWJ20_4311 NC_031671.1 1935417 1935698 D AWJ20_4311 <1935417..>1935698 Sugiyamaella lignohabitans 30036430 AWJ20_4312 mRNA DNF3 NC_031671.1 1938960 1940012 R AWJ20_4312 complement(<1938960..>1940012) Sugiyamaella lignohabitans 30036431 AWJ20_4313 mRNA RPL19A NC_031671.1 1945012 1945314 D AWJ20_4313 <1945012..>1945314 Sugiyamaella lignohabitans 30036432 AWJ20_4314 mRNA OYE2 NC_031671.1 1947551 1948150 D AWJ20_4314 <1947551..>1948150 Sugiyamaella lignohabitans 30036433 AWJ20_4315 mRNA OYE2 NC_031671.1 1949423 1949962 D AWJ20_4315 <1949423..>1949962 Sugiyamaella lignohabitans 30036434 AWJ20_4316 mRNA AIM1 NC_031671.1 1950997 1951368 D AWJ20_4316 <1950997..>1951368 Sugiyamaella lignohabitans 30036435 AWJ20_4317 mRNA AWJ20_4317 NC_031671.1 1956643 1957866 D AWJ20_4317 <1956643..>1957866 Sugiyamaella lignohabitans 30036436 AWJ20_4318 mRNA TEC1 NC_031671.1 1958970 1961627 R AWJ20_4318 complement(<1958970..>1961627) Sugiyamaella lignohabitans 30036437 AWJ20_4319 mRNA RAX1 NC_031671.1 1967187 1968758 D AWJ20_4319 <1967187..>1968758 Sugiyamaella lignohabitans 30036438 AWJ20_4320 mRNA ell1 NC_031671.1 1969550 1971718 R AWJ20_4320 complement(<1969550..>1971718) Sugiyamaella lignohabitans 30036440 AWJ20_4321 mRNA AWJ20_4321 NC_031671.1 1974724 1975791 R AWJ20_4321 complement(<1974724..>1975791) Sugiyamaella lignohabitans 30036441 AWJ20_4322 mRNA SLN1 NC_031671.1 1978189 1981404 R AWJ20_4322 complement(<1978189..>1981404) Sugiyamaella lignohabitans 30036442 AWJ20_4324 mRNA AMD2 NC_031671.1 1985212 1986825 D AWJ20_4324 <1985212..>1986825 Sugiyamaella lignohabitans 30036444 AWJ20_4326 mRNA AWJ20_4326 NC_031671.1 1989143 1989754 D AWJ20_4326 <1989143..>1989754 Sugiyamaella lignohabitans 30036446 AWJ20_4327 mRNA sad1 NC_031671.1 1989965 1992781 R AWJ20_4327 complement(<1989965..>1992781) Sugiyamaella lignohabitans 30036447 AWJ20_4328 mRNA AWJ20_4328 NC_031671.1 1993816 1995180 D AWJ20_4328 <1993816..>1995180 Sugiyamaella lignohabitans 30036448 AWJ20_4329 mRNA OSH3 NC_031671.1 1995398 1998667 R AWJ20_4329 complement(<1995398..>1998667) Sugiyamaella lignohabitans 30036449 AWJ20_4330 mRNA TMS1 NC_031671.1 2000252 2001685 D AWJ20_4330 <2000252..>2001685 Sugiyamaella lignohabitans 30036451 AWJ20_4331 mRNA BBC1 NC_031671.1 2002494 2006794 D AWJ20_4331 join(<2002494..2004681,2004738..>2006794) Sugiyamaella lignohabitans 30036452 AWJ20_4332 mRNA SAM2 NC_031671.1 2007555 2008709 D AWJ20_4332 <2007555..>2008709 Sugiyamaella lignohabitans 30036453 AWJ20_4333 mRNA RIB2 NC_031671.1 2009798 2010586 D AWJ20_4333 <2009798..>2010586 Sugiyamaella lignohabitans 30036454 AWJ20_4334 mRNA KAP123 NC_031671.1 2012036 2015407 D AWJ20_4334 <2012036..>2015407 Sugiyamaella lignohabitans 30036455 AWJ20_4335 mRNA AWJ20_4335 NC_031671.1 2016496 2018064 D AWJ20_4335 <2016496..>2018064 Sugiyamaella lignohabitans 30036456 AWJ20_4336 mRNA MRP7 NC_031671.1 2019230 2020396 D AWJ20_4336 <2019230..>2020396 Sugiyamaella lignohabitans 30036457 AWJ20_4337 mRNA TPN1 NC_031671.1 2020594 2022162 R AWJ20_4337 complement(<2020594..>2022162) Sugiyamaella lignohabitans 30036458 AWJ20_4338 mRNA AWJ20_4338 NC_031671.1 2022990 2024594 R AWJ20_4338 complement(<2022990..>2024594) Sugiyamaella lignohabitans 30036459 AWJ20_4339 mRNA GAL10 NC_031671.1 2024998 2025672 R AWJ20_4339 complement(<2024998..>2025672) Sugiyamaella lignohabitans 30036460 AWJ20_4340 mRNA IFH1 NC_031671.1 2028562 2030778 D AWJ20_4340 <2028562..>2030778 Sugiyamaella lignohabitans 30036462 AWJ20_4341 mRNA AWJ20_4341 NC_031671.1 2031101 2032018 R AWJ20_4341 complement(<2031101..>2032018) Sugiyamaella lignohabitans 30036463 AWJ20_4342 mRNA GCN2 NC_031671.1 2032429 2037639 R AWJ20_4342 complement(<2032429..>2037639) Sugiyamaella lignohabitans 30036464 AWJ20_4343 mRNA AWJ20_4343 NC_031671.1 2043163 2044626 D AWJ20_4343 <2043163..>2044626 Sugiyamaella lignohabitans 30036465 AWJ20_4344 mRNA ARX1 NC_031671.1 2044980 2046533 D AWJ20_4344 <2044980..>2046533 Sugiyamaella lignohabitans 30036466 AWJ20_4345 mRNA SGF73 NC_031671.1 2048221 2049789 D AWJ20_4345 <2048221..>2049789 Sugiyamaella lignohabitans 30036467 AWJ20_4346 mRNA BMH2 NC_031671.1 2054333 2055151 D AWJ20_4346 <2054333..>2055151 Sugiyamaella lignohabitans 30036468 AWJ20_4347 mRNA ASC1 NC_031671.1 2057461 2058477 D AWJ20_4347 <2057461..>2058477 Sugiyamaella lignohabitans 30036469 AWJ20_4348 mRNA tam14 NC_031671.1 2058719 2060212 R AWJ20_4348 complement(<2058719..>2060212) Sugiyamaella lignohabitans 30036470 AWJ20_4349 mRNA SCJ1 NC_031671.1 2060611 2061657 D AWJ20_4349 <2060611..>2061657 Sugiyamaella lignohabitans 30036471 AWJ20_4350 mRNA AWJ20_4350 NC_031671.1 2061855 2062805 R AWJ20_4350 complement(<2061855..>2062805) Sugiyamaella lignohabitans 30036473 AWJ20_4351 mRNA OLE1 NC_031671.1 2065489 2066967 D AWJ20_4351 <2065489..>2066967 Sugiyamaella lignohabitans 30036474 AWJ20_4352 mRNA MET8 NC_031671.1 2068017 2068775 D AWJ20_4352 <2068017..>2068775 Sugiyamaella lignohabitans 30036475 AWJ20_4353 mRNA BCD1 NC_031671.1 2071121 2072368 R AWJ20_4353 complement(<2071121..>2072368) Sugiyamaella lignohabitans 30036476 AWJ20_4354 mRNA MSC7 NC_031671.1 2074720 2076501 D AWJ20_4354 <2074720..>2076501 Sugiyamaella lignohabitans 30036477 AWJ20_4355 mRNA RRF1 NC_031671.1 2076751 2077491 R AWJ20_4355 complement(<2076751..>2077491) Sugiyamaella lignohabitans 30036478 AWJ20_4356 mRNA RPL10 NC_031671.1 2079043 2079711 D AWJ20_4356 <2079043..>2079711 Sugiyamaella lignohabitans 30036479 AWJ20_4358 mRNA DLT1 NC_031671.1 2081839 2083404 D AWJ20_4358 <2081839..>2083404 Sugiyamaella lignohabitans 30036481 AWJ20_4359 mRNA ENT2 NC_031671.1 2083659 2085212 R AWJ20_4359 complement(<2083659..>2085212) Sugiyamaella lignohabitans 30036482 AWJ20_4360 mRNA AIM2 NC_031671.1 2088253 2088792 D AWJ20_4360 <2088253..>2088792 Sugiyamaella lignohabitans 30036484 AWJ20_4361 mRNA DCW1 NC_031671.1 2091163 2092527 D AWJ20_4361 <2091163..>2092527 Sugiyamaella lignohabitans 30036485 AWJ20_4362 mRNA DCW1 NC_031671.1 2093419 2094780 R AWJ20_4362 complement(<2093419..>2094780) Sugiyamaella lignohabitans 30036486 AWJ20_4364 mRNA ppc89 NC_031671.1 2096672 2098993 R AWJ20_4364 complement(<2096672..>2098993) Sugiyamaella lignohabitans 30036488 AWJ20_4365 mRNA URA5 NC_031671.1 2099500 2100213 D AWJ20_4365 <2099500..>2100213 Sugiyamaella lignohabitans 30036489 AWJ20_4366 mRNA mug136 NC_031671.1 2102663 2104201 D AWJ20_4366 <2102663..>2104201 Sugiyamaella lignohabitans 30036490 AWJ20_4367 mRNA SEC65 NC_031671.1 2104394 2105257 R AWJ20_4367 complement(<2104394..>2105257) Sugiyamaella lignohabitans 30036491 AWJ20_4368 mRNA TOM71 NC_031671.1 2109154 2109843 R AWJ20_4368 complement(<2109154..>2109843) Sugiyamaella lignohabitans 30036492 AWJ20_4369 mRNA SCS7 NC_031671.1 2110210 2111316 R AWJ20_4369 complement(<2110210..>2111316) Sugiyamaella lignohabitans 30036493 AWJ20_4371 mRNA AWJ20_4371 NC_031671.1 2113234 2113947 D AWJ20_4371 <2113234..>2113947 Sugiyamaella lignohabitans 30036496 AWJ20_4372 mRNA DAL5 NC_031671.1 2115570 2116118 D AWJ20_4372 <2115570..>2116118 Sugiyamaella lignohabitans 30036497 AWJ20_4373 mRNA THI73 NC_031671.1 2116563 2117369 D AWJ20_4373 <2116563..>2117369 Sugiyamaella lignohabitans 30036498 AWJ20_4374 mRNA AWJ20_4374 NC_031671.1 2119348 2120598 D AWJ20_4374 <2119348..>2120598 Sugiyamaella lignohabitans 30036499 AWJ20_4375 mRNA AWJ20_4375 NC_031671.1 2123358 2124776 R AWJ20_4375 complement(<2123358..>2124776) Sugiyamaella lignohabitans 30036500 AWJ20_4376 mRNA AWJ20_4376 NC_031671.1 2126849 2128852 R AWJ20_4376 complement(<2126849..>2128852) Sugiyamaella lignohabitans 30036501 AWJ20_4377 mRNA AWJ20_4377 NC_031671.1 2138045 2138467 D AWJ20_4377 <2138045..>2138467 Sugiyamaella lignohabitans 30036502 AWJ20_4378 mRNA DYS1 NC_031671.1 2138712 2139812 R AWJ20_4378 complement(<2138712..>2139812) Sugiyamaella lignohabitans 30036503 AWJ20_4379 mRNA ADK1 NC_031671.1 2140654 2141421 D AWJ20_4379 <2140654..>2141421 Sugiyamaella lignohabitans 30036504 AWJ20_4380 mRNA PCF11 NC_031671.1 2141698 2143314 R AWJ20_4380 complement(<2141698..>2143314) Sugiyamaella lignohabitans 30036506 AWJ20_4381 mRNA AWJ20_4381 NC_031671.1 2143721 2144047 R AWJ20_4381 complement(<2143721..>2144047) Sugiyamaella lignohabitans 30036507 AWJ20_4382 mRNA GGC1 NC_031671.1 2146078 2146872 D AWJ20_4382 <2146078..>2146872 Sugiyamaella lignohabitans 30036508 AWJ20_4383 mRNA PUF3 NC_031671.1 2147349 2150264 D AWJ20_4383 <2147349..>2150264 Sugiyamaella lignohabitans 30036509 AWJ20_4384 mRNA AWJ20_4384 NC_031671.1 2167450 2168505 D AWJ20_4384 <2167450..>2168505 Sugiyamaella lignohabitans 30036510 AWJ20_4385 mRNA AWJ20_4385 NC_031671.1 2168658 2169659 R AWJ20_4385 complement(<2168658..>2169659) Sugiyamaella lignohabitans 30036511 AWJ20_4386 mRNA AWJ20_4386 NC_031671.1 2170379 2170669 D AWJ20_4386 <2170379..>2170669 Sugiyamaella lignohabitans 30036512 AWJ20_4387 mRNA NAT2 NC_031671.1 2172362 2173081 D AWJ20_4387 <2172362..>2173081 Sugiyamaella lignohabitans 30036513 AWJ20_4388 mRNA GTR1 NC_031671.1 2176203 2176940 R AWJ20_4388 complement(<2176203..>2176940) Sugiyamaella lignohabitans 30036514 AWJ20_4389 mRNA ERG9 NC_031671.1 2178301 2179545 D AWJ20_4389 <2178301..>2179545 Sugiyamaella lignohabitans 30036515 AWJ20_4390 mRNA AWJ20_4390 NC_031671.1 2179752 2180648 R AWJ20_4390 complement(<2179752..>2180648) Sugiyamaella lignohabitans 30036517 AWJ20_4391 mRNA COQ4 NC_031671.1 2189886 2190818 D AWJ20_4391 <2189886..>2190818 Sugiyamaella lignohabitans 30036518 AWJ20_4392 mRNA NOP56 NC_031671.1 2194235 2195800 R AWJ20_4392 complement(<2194235..>2195800) Sugiyamaella lignohabitans 30036519 AWJ20_4393 mRNA MAP1 NC_031671.1 2196589 2197773 D AWJ20_4393 <2196589..>2197773 Sugiyamaella lignohabitans 30036520 AWJ20_4394 mRNA CCT6 NC_031671.1 2206534 2208135 R AWJ20_4394 complement(<2206534..>2208135) Sugiyamaella lignohabitans 30036521 AWJ20_4395 mRNA AWJ20_4395 NC_031671.1 2208929 2209555 D AWJ20_4395 <2208929..>2209555 Sugiyamaella lignohabitans 30036522 AWJ20_4396 mRNA AWJ20_4396 NC_031671.1 2209793 2210395 R AWJ20_4396 complement(<2209793..>2210395) Sugiyamaella lignohabitans 30036523 AWJ20_4397 mRNA UGA3 NC_031671.1 2216262 2218670 D AWJ20_4397 <2216262..>2218670 Sugiyamaella lignohabitans 30036524 AWJ20_4398 mRNA AWJ20_4398 NC_031671.1 2220434 2226492 R AWJ20_4398 complement(join(<2220434..2220442,2220853..>2226492)) Sugiyamaella lignohabitans 30036525 AWJ20_4399 mRNA SLY1 NC_031671.1 2227206 2229161 D AWJ20_4399 <2227206..>2229161 Sugiyamaella lignohabitans 30036526 AWJ20_4400 mRNA AWJ20_4400 NC_031671.1 2230272 2231993 D AWJ20_4400 <2230272..>2231993 Sugiyamaella lignohabitans 30036529 AWJ20_4401 mRNA RVB1 NC_031671.1 2232530 2233900 R AWJ20_4401 complement(<2232530..>2233900) Sugiyamaella lignohabitans 30036530 AWJ20_4402 mRNA HST4 NC_031671.1 2234504 2236435 D AWJ20_4402 <2234504..>2236435 Sugiyamaella lignohabitans 30036531 AWJ20_4403 mRNA GPN3 NC_031671.1 2236658 2237482 R AWJ20_4403 complement(<2236658..>2237482) Sugiyamaella lignohabitans 30036532 AWJ20_4404 mRNA MSC2 NC_031671.1 2237940 2240624 R AWJ20_4404 complement(<2237940..>2240624) Sugiyamaella lignohabitans 30036533 AWJ20_4405 mRNA SWT21 NC_031671.1 2241082 2242248 D AWJ20_4405 <2241082..>2242248 Sugiyamaella lignohabitans 30036534 AWJ20_4406 mRNA RRI1 NC_031671.1 2242438 2243550 R AWJ20_4406 complement(<2242438..>2243550) Sugiyamaella lignohabitans 30036535 AWJ20_4407 mRNA AWJ20_4407 NC_031671.1 2244772 2247237 D AWJ20_4407 <2244772..>2247237 Sugiyamaella lignohabitans 30036536 AWJ20_4408 mRNA PBN1 NC_031671.1 2247390 2248109 R AWJ20_4408 complement(<2247390..>2248109) Sugiyamaella lignohabitans 30036537 AWJ20_4409 mRNA AWJ20_4409 NC_031671.1 2250779 2251789 D AWJ20_4409 <2250779..>2251789 Sugiyamaella lignohabitans 30036538 AWJ20_4410 mRNA RGD2 NC_031671.1 2252126 2254819 R AWJ20_4410 complement(<2252126..>2254819) Sugiyamaella lignohabitans 30036540 AWJ20_4411 mRNA ASG1 NC_031671.1 2257298 2260183 D AWJ20_4411 <2257298..>2260183 Sugiyamaella lignohabitans 30036541 AWJ20_4412 mRNA RIB1 NC_031671.1 2260396 2262627 R AWJ20_4412 complement(<2260396..>2262627) Sugiyamaella lignohabitans 30036542 AWJ20_4413 mRNA AWJ20_4413 NC_031671.1 2264645 2265148 D AWJ20_4413 <2264645..>2265148 Sugiyamaella lignohabitans 30036543 AWJ20_4414 mRNA RRT2 NC_031671.1 2266161 2267450 R AWJ20_4414 complement(<2266161..>2267450) Sugiyamaella lignohabitans 30036544 AWJ20_4415 mRNA AWJ20_4415 NC_031671.1 2270766 2271950 D AWJ20_4415 <2270766..>2271950 Sugiyamaella lignohabitans 30036545 AWJ20_4416 mRNA ERP3 NC_031671.1 2272077 2272652 D AWJ20_4416 <2272077..>2272652 Sugiyamaella lignohabitans 30036546 AWJ20_4418 mRNA DOP98 NC_031671.1 2273945 2274283 D AWJ20_4418 <2273945..>2274283 Sugiyamaella lignohabitans 30036548 AWJ20_4419 mRNA DOM34 NC_031671.1 2274543 2275703 D AWJ20_4419 <2274543..>2275703 Sugiyamaella lignohabitans 30036549 AWJ20_4420 mRNA SNF3 NC_031671.1 2276507 2277661 D AWJ20_4420 <2276507..>2277661 Sugiyamaella lignohabitans 30036551 AWJ20_4421 mRNA AWJ20_4421 NC_031671.1 2277959 2278162 D AWJ20_4421 <2277959..>2278162 Sugiyamaella lignohabitans 30036552 AWJ20_4422 mRNA AWJ20_4422 NC_031671.1 2278558 2279526 D AWJ20_4422 <2278558..>2279526 Sugiyamaella lignohabitans 30036553 AWJ20_4423 mRNA coq9 NC_031671.1 2280776 2281357 R AWJ20_4423 complement(<2280776..>2281357) Sugiyamaella lignohabitans 30036554 AWJ20_4424 mRNA FAR10 NC_031671.1 2282230 2284548 D AWJ20_4424 <2282230..>2284548 Sugiyamaella lignohabitans 30036555 AWJ20_4425 mRNA MGR3 NC_031671.1 2284858 2285790 D AWJ20_4425 <2284858..>2285790 Sugiyamaella lignohabitans 30036556 AWJ20_4426 mRNA AWJ20_4426 NC_031671.1 2286204 2286602 D AWJ20_4426 <2286204..>2286602 Sugiyamaella lignohabitans 30036557 AWJ20_4427 mRNA AWJ20_4427 NC_031671.1 2286888 2287433 R AWJ20_4427 complement(<2286888..>2287433) Sugiyamaella lignohabitans 30036558 AWJ20_4428 mRNA FOL3 NC_031671.1 2290605 2291834 R AWJ20_4428 complement(<2290605..>2291834) Sugiyamaella lignohabitans 30036559 AWJ20_4429 mRNA RPO41 NC_031671.1 2293027 2295939 D AWJ20_4429 <2293027..>2295939 Sugiyamaella lignohabitans 30036560 AWJ20_4430 mRNA ELO1 NC_031671.1 2297411 2298451 D AWJ20_4430 <2297411..>2298451 Sugiyamaella lignohabitans 30036562 AWJ20_4431 mRNA STL1 NC_031671.1 2299717 2301507 D AWJ20_4431 <2299717..>2301507 Sugiyamaella lignohabitans 30036563 AWJ20_4432 mRNA TRM8 NC_031671.1 2305254 2305874 R AWJ20_4432 complement(<2305254..>2305874) Sugiyamaella lignohabitans 30036564 AWJ20_4433 mRNA CPS1 NC_031671.1 2307112 2308890 D AWJ20_4433 <2307112..>2308890 Sugiyamaella lignohabitans 30036565 AWJ20_4434 mRNA AYR1 NC_031671.1 2309070 2309897 R AWJ20_4434 complement(<2309070..>2309897) Sugiyamaella lignohabitans 30036566 AWJ20_4435 mRNA AWJ20_4435 NC_031671.1 2310141 2311646 D AWJ20_4435 <2310141..>2311646 Sugiyamaella lignohabitans 30036567 AWJ20_4436 mRNA PPM1 NC_031671.1 2311686 2312504 R AWJ20_4436 complement(<2311686..>2312504) Sugiyamaella lignohabitans 30036568 AWJ20_4437 mRNA AWJ20_4437 NC_031671.1 2312541 2312846 R AWJ20_4437 complement(<2312541..>2312846) Sugiyamaella lignohabitans 30036569 AWJ20_4438 mRNA AWJ20_4438 NC_031671.1 2313368 2314573 D AWJ20_4438 <2313368..>2314573 Sugiyamaella lignohabitans 30036570 AWJ20_4439 mRNA SEC31 NC_031671.1 2314963 2318809 R AWJ20_4439 complement(join(<2314963..2318539,2318598..>2318809)) Sugiyamaella lignohabitans 30036571 AWJ20_4440 mRNA AWJ20_4440 NC_031671.1 2319259 2319795 D AWJ20_4440 <2319259..>2319795 Sugiyamaella lignohabitans 30036573 AWJ20_4441 mRNA SLT2 NC_031671.1 2321300 2321626 R AWJ20_4441 complement(<2321300..>2321626) Sugiyamaella lignohabitans 30036574 AWJ20_4442 mRNA AWJ20_4442 NC_031671.1 2322706 2323311 D AWJ20_4442 <2322706..>2323311 Sugiyamaella lignohabitans 30036575 AWJ20_4443 mRNA ARO7 NC_031671.1 2325220 2325630 D AWJ20_4443 <2325220..>2325630 Sugiyamaella lignohabitans 30036576 AWJ20_4444 mRNA YMC1 NC_031671.1 2325865 2326494 R AWJ20_4444 complement(<2325865..>2326494) Sugiyamaella lignohabitans 30036577 AWJ20_4445 mRNA VID24 NC_031671.1 2328510 2329514 D AWJ20_4445 <2328510..>2329514 Sugiyamaella lignohabitans 30036578 AWJ20_4446 mRNA DLD1 NC_031671.1 2329808 2331589 R AWJ20_4446 complement(<2329808..>2331589) Sugiyamaella lignohabitans 30036579 AWJ20_4447 mRNA ERG25 NC_031671.1 2332724 2333389 D AWJ20_4447 <2332724..>2333389 Sugiyamaella lignohabitans 30036580 AWJ20_4448 mRNA TOP3 NC_031671.1 2338403 2339182 D AWJ20_4448 <2338403..>2339182 Sugiyamaella lignohabitans 30036581 AWJ20_4449 mRNA TOP3 NC_031671.1 2339215 2340084 D AWJ20_4449 <2339215..>2340084 Sugiyamaella lignohabitans 30036582 AWJ20_4450 mRNA NUP42 NC_031671.1 2340212 2342455 R AWJ20_4450 complement(<2340212..>2342455) Sugiyamaella lignohabitans 30036584 AWJ20_4451 mRNA AWJ20_4451 NC_031671.1 2344753 2345187 R AWJ20_4451 complement(<2344753..>2345187) Sugiyamaella lignohabitans 30036585 AWJ20_4452 mRNA AWJ20_4452 NC_031671.1 2345937 2347082 R AWJ20_4452 complement(<2345937..>2347082) Sugiyamaella lignohabitans 30036586 AWJ20_4453 mRNA DSD1 NC_031671.1 2348096 2349337 R AWJ20_4453 complement(<2348096..>2349337) Sugiyamaella lignohabitans 30036587 AWJ20_4454 mRNA set8 NC_031671.1 2349925 2351553 R AWJ20_4454 complement(<2349925..>2351553) Sugiyamaella lignohabitans 30036588 AWJ20_4455 mRNA HCR1 NC_031671.1 2351971 2352708 D AWJ20_4455 <2351971..>2352708 Sugiyamaella lignohabitans 30036589 AWJ20_4456 mRNA AWJ20_4456 NC_031671.1 2354132 2356783 R AWJ20_4456 complement(<2354132..>2356783) Sugiyamaella lignohabitans 30036590 AWJ20_4457 mRNA AWJ20_4457 NC_031671.1 2357336 2360158 R AWJ20_4457 complement(<2357336..>2360158) Sugiyamaella lignohabitans 30036591 AWJ20_4458 mRNA MSS116 NC_031671.1 2362866 2365043 D AWJ20_4458 <2362866..>2365043 Sugiyamaella lignohabitans 30036592 AWJ20_4459 mRNA NRP1 NC_031671.1 2365325 2366908 R AWJ20_4459 complement(<2365325..>2366908) Sugiyamaella lignohabitans 30036593 AWJ20_4460 mRNA VPS34 NC_031671.1 2368160 2370664 D AWJ20_4460 <2368160..>2370664 Sugiyamaella lignohabitans 30036595 AWJ20_4461 mRNA SFA1 NC_031671.1 2370798 2371934 R AWJ20_4461 complement(<2370798..>2371934) Sugiyamaella lignohabitans 30036596 AWJ20_4462 mRNA AWJ20_4462 NC_031671.1 2370879 2371415 D AWJ20_4462 <2370879..>2371415 Sugiyamaella lignohabitans 30036597 AWJ20_4463 mRNA CAB5 NC_031671.1 2372588 2373310 R AWJ20_4463 complement(<2372588..>2373310) Sugiyamaella lignohabitans 30036598 AWJ20_4464 mRNA PAN5 NC_031671.1 2374449 2377097 D AWJ20_4464 <2374449..>2377097 Sugiyamaella lignohabitans 30036599 AWJ20_4465 mRNA RKM2 NC_031671.1 2377286 2378401 R AWJ20_4465 complement(<2377286..>2378401) Sugiyamaella lignohabitans 30036600 AWJ20_4466 mRNA AWJ20_4466 NC_031671.1 2379023 2379430 D AWJ20_4466 <2379023..>2379430 Sugiyamaella lignohabitans 30036601 AWJ20_4467 mRNA UBR1 NC_031671.1 2379826 2385129 D AWJ20_4467 <2379826..>2385129 Sugiyamaella lignohabitans 30036602 AWJ20_4468 mRNA TYS1 NC_031671.1 2385618 2386805 R AWJ20_4468 complement(<2385618..>2386805) Sugiyamaella lignohabitans 30036603 AWJ20_4469 mRNA AWJ20_4469 NC_031671.1 2387178 2387471 D AWJ20_4469 <2387178..>2387471 Sugiyamaella lignohabitans 30036604 AWJ20_4470 mRNA AWJ20_4470 NC_031671.1 2387508 2387765 D AWJ20_4470 <2387508..>2387765 Sugiyamaella lignohabitans 30036606 AWJ20_4471 mRNA AWJ20_4471 NC_031671.1 2388876 2390291 D AWJ20_4471 <2388876..>2390291 Sugiyamaella lignohabitans 30036607 AWJ20_4472 mRNA FUN30 NC_031671.1 2390625 2392220 D AWJ20_4472 <2390625..>2392220 Sugiyamaella lignohabitans 30036608 AWJ20_4473 mRNA ATS1 NC_031671.1 2393514 2394632 D AWJ20_4473 <2393514..>2394632 Sugiyamaella lignohabitans 30036609 AWJ20_4474 mRNA CDC7 NC_031671.1 2395693 2397702 D AWJ20_4474 <2395693..>2397702 Sugiyamaella lignohabitans 30036610 AWJ20_4475 mRNA AWJ20_4475 NC_031671.1 2397989 2398939 D AWJ20_4475 <2397989..>2398939 Sugiyamaella lignohabitans 30036611 AWJ20_4476 mRNA UGA2 NC_031671.1 2399040 2400572 R AWJ20_4476 complement(<2399040..>2400572) Sugiyamaella lignohabitans 30036612 AWJ20_4477 mRNA TNA1 NC_031671.1 2401082 2402569 R AWJ20_4477 complement(<2401082..>2402569) Sugiyamaella lignohabitans 30036613 AWJ20_4478 mRNA AWJ20_4478 NC_031671.1 2403328 2405571 R AWJ20_4478 complement(<2403328..>2405571) Sugiyamaella lignohabitans 30036614 AWJ20_4479 mRNA TKL1 NC_031671.1 2406896 2408935 D AWJ20_4479 <2406896..>2408935 Sugiyamaella lignohabitans 30036615 AWJ20_4480 mRNA COG3 NC_031671.1 2409994 2412699 R AWJ20_4480 complement(<2409994..>2412699) Sugiyamaella lignohabitans 30036617 AWJ20_4481 mRNA TYR1 NC_031671.1 2413693 2414547 D AWJ20_4481 <2413693..>2414547 Sugiyamaella lignohabitans 30036618 AWJ20_4482 mRNA RRP8 NC_031671.1 2415080 2416276 R AWJ20_4482 complement(<2415080..>2416276) Sugiyamaella lignohabitans 30036619 AWJ20_4483 mRNA AWJ20_4483 NC_031671.1 2417733 2418506 D AWJ20_4483 <2417733..>2418506 Sugiyamaella lignohabitans 30036620 AWJ20_4484 mRNA AWJ20_4484 NC_031671.1 2418677 2418976 R AWJ20_4484 complement(<2418677..>2418976) Sugiyamaella lignohabitans 30036621 AWJ20_4485 mRNA sim3 NC_031671.1 2419676 2420620 D AWJ20_4485 <2419676..>2420620 Sugiyamaella lignohabitans 30036622 AWJ20_4486 mRNA AWJ20_4486 NC_031671.1 2420785 2421168 D AWJ20_4486 <2420785..>2421168 Sugiyamaella lignohabitans 30036623 AWJ20_4487 mRNA AWJ20_4487 NC_031671.1 2424725 2426413 D AWJ20_4487 <2424725..>2426413 Sugiyamaella lignohabitans 30036624 AWJ20_4488 mRNA IMP4 NC_031671.1 2426716 2427672 R AWJ20_4488 complement(join(<2426716..2427564,2427670..>2427672)) Sugiyamaella lignohabitans 30036625 AWJ20_4489 mRNA NAM7 NC_031671.1 2428600 2431943 D AWJ20_4489 join(<2428600..2429021,2429261..>2431943) Sugiyamaella lignohabitans 30036626 AWJ20_4490 mRNA AWJ20_4490 NC_031671.1 2436134 2438263 R AWJ20_4490 complement(join(<2436134..2437738,2437805..>2438263)) Sugiyamaella lignohabitans 30036628 AWJ20_4491 mRNA AWJ20_4491 NC_031671.1 2438819 2442226 R AWJ20_4491 complement(join(<2438819..2440996,2441780..>2442226)) Sugiyamaella lignohabitans 30036629 AWJ20_4492 mRNA BUD2 NC_031671.1 2446880 2451157 D AWJ20_4492 <2446880..>2451157 Sugiyamaella lignohabitans 30036630 AWJ20_4493 mRNA AWJ20_4493 NC_031671.1 2451551 2454400 R AWJ20_4493 complement(<2451551..>2454400) Sugiyamaella lignohabitans 30036631 AWJ20_4494 mRNA AWJ20_4494 NC_031671.1 2457174 2457710 R AWJ20_4494 complement(<2457174..>2457710) Sugiyamaella lignohabitans 30036632 AWJ20_4495 mRNA TOP2 NC_031671.1 2458838 2459821 D AWJ20_4495 <2458838..>2459821 Sugiyamaella lignohabitans 30036633 AWJ20_4496 mRNA TOP2 NC_031671.1 2460004 2463867 D AWJ20_4496 <2460004..>2463867 Sugiyamaella lignohabitans 30036634 AWJ20_4497 mRNA AWJ20_4497 NC_031671.1 2465001 2466143 R AWJ20_4497 complement(<2465001..>2466143) Sugiyamaella lignohabitans 30036635 AWJ20_4498 mRNA AWJ20_4498 NC_031671.1 2470929 2472470 D AWJ20_4498 <2470929..>2472470 Sugiyamaella lignohabitans 30036636 AWJ20_4499 mRNA USV1 NC_031671.1 2481696 2483465 D AWJ20_4499 <2481696..>2483465 Sugiyamaella lignohabitans 30036637 AWJ20_4500 mRNA SEC21 NC_031671.1 2485505 2488303 R AWJ20_4500 complement(<2485505..>2488303) Sugiyamaella lignohabitans 30036640 AWJ20_4501 mRNA AWJ20_4501 NC_031671.1 2490137 2490691 D AWJ20_4501 <2490137..>2490691 Sugiyamaella lignohabitans 30036641 AWJ20_4502 mRNA YPS3 NC_031671.1 2494111 2495370 D AWJ20_4502 <2494111..>2495370 Sugiyamaella lignohabitans 30036642 AWJ20_4503 mRNA DAK1 NC_031671.1 2499060 2500847 R AWJ20_4503 complement(<2499060..>2500847) Sugiyamaella lignohabitans 30036643 AWJ20_4504 mRNA AWJ20_4504 NC_031671.1 2501542 2501976 D AWJ20_4504 <2501542..>2501976 Sugiyamaella lignohabitans 30036644 AWJ20_4505 mRNA AWJ20_4505 NC_031671.1 2502835 2504454 D AWJ20_4505 <2502835..>2504454 Sugiyamaella lignohabitans 30036645 AWJ20_4506 mRNA AWJ20_4506 NC_031671.1 2509307 2510023 D AWJ20_4506 <2509307..>2510023 Sugiyamaella lignohabitans 30036646 AWJ20_4507 mRNA MRPL36 NC_031671.1 2511106 2511696 D AWJ20_4507 <2511106..>2511696 Sugiyamaella lignohabitans 30036647 AWJ20_4508 mRNA DIB1 NC_031671.1 2512212 2512643 D AWJ20_4508 <2512212..>2512643 Sugiyamaella lignohabitans 30036648 AWJ20_4509 mRNA AAT2 NC_031671.1 2514663 2515097 D AWJ20_4509 <2514663..>2515097 Sugiyamaella lignohabitans 30036649 AWJ20_4510 mRNA AAT2 NC_031671.1 2515415 2515891 D AWJ20_4510 <2515415..>2515891 Sugiyamaella lignohabitans 30036651 AWJ20_4511 mRNA AWJ20_4511 NC_031671.1 2516198 2516947 R AWJ20_4511 complement(<2516198..>2516947) Sugiyamaella lignohabitans 30036652 AWJ20_4512 mRNA AWJ20_4512 NC_031671.1 2521259 2522800 D AWJ20_4512 <2521259..>2522800 Sugiyamaella lignohabitans 30036653 AWJ20_4513 mRNA AWJ20_4513 NC_031671.1 2529254 2530786 D AWJ20_4513 <2529254..>2530786 Sugiyamaella lignohabitans 30036654 AWJ20_4514 mRNA FUS3 NC_031671.1 2531090 2532160 R AWJ20_4514 complement(<2531090..>2532160) Sugiyamaella lignohabitans 30036655 AWJ20_4515 mRNA RPL24B NC_031671.1 2535258 2535737 D AWJ20_4515 <2535258..>2535737 Sugiyamaella lignohabitans 30036656 AWJ20_4516 mRNA AWJ20_4516 NC_031671.1 2536390 2536974 D AWJ20_4516 <2536390..>2536974 Sugiyamaella lignohabitans 30036657 AWJ20_4517 mRNA AWJ20_4517 NC_031671.1 2537041 2538393 R AWJ20_4517 complement(<2537041..>2538393) Sugiyamaella lignohabitans 30036658 AWJ20_4518 mRNA STU2 NC_031671.1 2540248 2543100 D AWJ20_4518 <2540248..>2543100 Sugiyamaella lignohabitans 30036659 AWJ20_4519 mRNA CIR1 NC_031671.1 2543324 2544097 R AWJ20_4519 complement(<2543324..>2544097) Sugiyamaella lignohabitans 30036660 AWJ20_4520 mRNA TDA10 NC_031671.1 2545547 2546404 D AWJ20_4520 <2545547..>2546404 Sugiyamaella lignohabitans 30036662 AWJ20_4521 mRNA AWJ20_4521 NC_031671.1 2547158 2547805 D AWJ20_4521 <2547158..>2547805 Sugiyamaella lignohabitans 30036663 AWJ20_4522 mRNA AVT2 NC_031671.1 2548493 2550112 D AWJ20_4522 <2548493..>2550112 Sugiyamaella lignohabitans 30036664 AWJ20_4523 mRNA AWJ20_4523 NC_031671.1 2548963 2549253 R AWJ20_4523 complement(<2548963..>2549253) Sugiyamaella lignohabitans 30036665 AWJ20_4524 mRNA TOF1 NC_031671.1 2551204 2553150 R AWJ20_4524 complement(<2551204..>2553150) Sugiyamaella lignohabitans 30036666 AWJ20_4525 mRNA TOF1 NC_031671.1 2553465 2554604 R AWJ20_4525 complement(<2553465..>2554604) Sugiyamaella lignohabitans 30036667 AWJ20_4526 mRNA MDE1 NC_031671.1 2554962 2555483 R AWJ20_4526 complement(<2554962..>2555483) Sugiyamaella lignohabitans 30036668 AWJ20_4527 mRNA MDE1 NC_031671.1 2555526 2555732 R AWJ20_4527 complement(<2555526..>2555732) Sugiyamaella lignohabitans 30036669 AWJ20_4528 mRNA BRE1 NC_031671.1 2556299 2558479 D AWJ20_4528 <2556299..>2558479 Sugiyamaella lignohabitans 30036670 AWJ20_4529 mRNA YMC1 NC_031671.1 2558736 2559620 R AWJ20_4529 complement(<2558736..>2559620) Sugiyamaella lignohabitans 30036671 AWJ20_4530 mRNA SLG1 NC_031671.1 2562350 2563387 D AWJ20_4530 <2562350..>2563387 Sugiyamaella lignohabitans 30036673 AWJ20_4531 mRNA CHO1 NC_031671.1 2564764 2565354 D AWJ20_4531 <2564764..>2565354 Sugiyamaella lignohabitans 30036674 AWJ20_4532 mRNA SLM1 NC_031671.1 2566956 2569379 D AWJ20_4532 <2566956..>2569379 Sugiyamaella lignohabitans 30036675 AWJ20_4533 mRNA ALG11 NC_031671.1 2569633 2571219 R AWJ20_4533 complement(<2569633..>2571219) Sugiyamaella lignohabitans 30036676 AWJ20_4534 mRNA MOB1 NC_031671.1 2572037 2572489 R AWJ20_4534 complement(<2572037..>2572489) Sugiyamaella lignohabitans 30036677 AWJ20_4535 mRNA FMP40 NC_031671.1 2574470 2576221 D AWJ20_4535 <2574470..>2576221 Sugiyamaella lignohabitans 30036678 AWJ20_4536 mRNA PIM1 NC_031671.1 2581042 2583876 D AWJ20_4536 <2581042..>2583876 Sugiyamaella lignohabitans 30036679 AWJ20_4537 mRNA STE18 NC_031671.1 2585187 2585597 D AWJ20_4537 <2585187..>2585597 Sugiyamaella lignohabitans 30036680 AWJ20_4538 mRNA ASN2 NC_031671.1 2586053 2587744 R AWJ20_4538 complement(<2586053..>2587744) Sugiyamaella lignohabitans 30036681 AWJ20_4539 mRNA AWJ20_4539 NC_031671.1 2588215 2589162 R AWJ20_4539 complement(<2588215..>2589162) Sugiyamaella lignohabitans 30036682 AWJ20_4540 mRNA AWJ20_4540 NC_031671.1 2591367 2592065 R AWJ20_4540 complement(<2591367..>2592065) Sugiyamaella lignohabitans 30036684 AWJ20_4541 mRNA HSP82 NC_031671.1 2595127 2597244 R AWJ20_4541 complement(<2595127..>2597244) Sugiyamaella lignohabitans 30036685 AWJ20_4542 mRNA AWJ20_4542 NC_031671.1 2597860 2599134 D AWJ20_4542 <2597860..>2599134 Sugiyamaella lignohabitans 30036686 AWJ20_4543 mRNA RTP1 NC_031671.1 2597940 2602097 R AWJ20_4543 complement(join(<2597940..2598538,2599217..>2602097)) Sugiyamaella lignohabitans 30036687 AWJ20_4544 mRNA OLA1 NC_031671.1 2602332 2603560 R AWJ20_4544 complement(join(<2602332..2603426,2603540..>2603560)) Sugiyamaella lignohabitans 30036688 AWJ20_4545 mRNA YPT6 NC_031671.1 2604471 2604992 R AWJ20_4545 complement(<2604471..>2604992) Sugiyamaella lignohabitans 30036689 AWJ20_4546 mRNA AWJ20_4546 NC_031671.1 2608339 2609799 D AWJ20_4546 <2608339..>2609799 Sugiyamaella lignohabitans 30036690 AWJ20_4547 mRNA TPS2 NC_031671.1 2611314 2614149 D AWJ20_4547 join(<2611314..2611508,2611630..>2614149) Sugiyamaella lignohabitans 30036691 AWJ20_4548 mRNA DAL81 NC_031671.1 2614347 2616632 R AWJ20_4548 complement(<2614347..>2616632) Sugiyamaella lignohabitans 30036692 AWJ20_4549 mRNA RFC4 NC_031671.1 2617496 2618332 D AWJ20_4549 <2617496..>2618332 Sugiyamaella lignohabitans 30036693 AWJ20_4551 mRNA LAG1 NC_031671.1 2622458 2623657 D AWJ20_4551 <2622458..>2623657 Sugiyamaella lignohabitans 30036696 AWJ20_4552 mRNA SHO1 NC_031671.1 2623923 2624918 R AWJ20_4552 complement(<2623923..>2624918) Sugiyamaella lignohabitans 30036697 AWJ20_4553 mRNA AVT6 NC_031671.1 2627204 2628136 R AWJ20_4553 complement(<2627204..>2628136) Sugiyamaella lignohabitans 30036698 AWJ20_4554 mRNA NOP53 NC_031671.1 2628951 2630252 D AWJ20_4554 <2628951..>2630252 Sugiyamaella lignohabitans 30036699 AWJ20_4555 mRNA AWJ20_4555 NC_031671.1 2630381 2631619 R AWJ20_4555 complement(<2630381..>2631619) Sugiyamaella lignohabitans 30036700 AWJ20_4556 mRNA PRP24 NC_031671.1 2632814 2635729 D AWJ20_4556 <2632814..>2635729 Sugiyamaella lignohabitans 30036701 AWJ20_4557 mRNA ECM29 NC_031671.1 2635789 2640549 R AWJ20_4557 complement(<2635789..>2640549) Sugiyamaella lignohabitans 30036702 AWJ20_4558 mRNA OCA5 NC_031671.1 2646532 2648226 D AWJ20_4558 <2646532..>2648226 Sugiyamaella lignohabitans 30036703 AWJ20_4559 mRNA ANP1 NC_031671.1 2648741 2650222 R AWJ20_4559 complement(<2648741..>2650222) Sugiyamaella lignohabitans 30036704 AWJ20_4560 mRNA PRP19 NC_031671.1 2652438 2653994 D AWJ20_4560 <2652438..>2653994 Sugiyamaella lignohabitans 30036706 AWJ20_4561 mRNA AWJ20_4561 NC_031671.1 2654246 2657515 R AWJ20_4561 complement(<2654246..>2657515) Sugiyamaella lignohabitans 30036707 AWJ20_4562 mRNA AWJ20_4562 NC_031671.1 2662790 2664160 R AWJ20_4562 complement(<2662790..>2664160) Sugiyamaella lignohabitans 30036708 AWJ20_4563 mRNA AWJ20_4563 NC_031671.1 2664782 2666131 D AWJ20_4563 <2664782..>2666131 Sugiyamaella lignohabitans 30036709 AWJ20_4564 mRNA MRPL22 NC_031671.1 2666532 2667500 D AWJ20_4564 <2666532..>2667500 Sugiyamaella lignohabitans 30036710 AWJ20_4565 mRNA YMR1 NC_031671.1 2670416 2672110 D AWJ20_4565 <2670416..>2672110 Sugiyamaella lignohabitans 30036711 AWJ20_4566 mRNA SHR3 NC_031671.1 2672443 2673036 R AWJ20_4566 complement(<2672443..>2673036) Sugiyamaella lignohabitans 30036712 AWJ20_4567 mRNA AWJ20_4567 NC_031671.1 2679164 2679835 R AWJ20_4567 complement(<2679164..>2679835) Sugiyamaella lignohabitans 30036713 AWJ20_4568 mRNA RPS3 NC_031671.1 2680153 2680914 R AWJ20_4568 complement(<2680153..>2680914) Sugiyamaella lignohabitans 30036714 AWJ20_4569 mRNA PAB1 NC_031671.1 2681834 2683393 D AWJ20_4569 <2681834..>2683393 Sugiyamaella lignohabitans 30036715 AWJ20_4570 mRNA ECM3 NC_031671.1 2683946 2685550 R AWJ20_4570 complement(<2683946..>2685550) Sugiyamaella lignohabitans 30036717 AWJ20_4571 mRNA APP1 NC_031671.1 2687167 2689527 D AWJ20_4571 <2687167..>2689527 Sugiyamaella lignohabitans 30036718 AWJ20_4572 mRNA PET9 NC_031671.1 2692376 2693248 D AWJ20_4572 <2692376..>2693248 Sugiyamaella lignohabitans 30036719 AWJ20_4573 mRNA AWJ20_4573 NC_031671.1 2694684 2697731 D AWJ20_4573 <2694684..>2697731 Sugiyamaella lignohabitans 30036720 AWJ20_4574 mRNA YTA12 NC_031671.1 2698405 2700816 D AWJ20_4574 <2698405..>2700816 Sugiyamaella lignohabitans 30036721 AWJ20_4575 mRNA AWJ20_4575 NC_031671.1 2699151 2699588 R AWJ20_4575 complement(<2699151..>2699588) Sugiyamaella lignohabitans 30036722 AWJ20_4576 mRNA NRG1 NC_031671.1 2701494 2703056 R AWJ20_4576 complement(<2701494..>2703056) Sugiyamaella lignohabitans 30036723 AWJ20_4577 mRNA BIM1 NC_031671.1 2707094 2708059 D AWJ20_4577 <2707094..>2708059 Sugiyamaella lignohabitans 30036724 AWJ20_4578 mRNA RPS0A NC_031671.1 2708601 2709344 R AWJ20_4578 complement(<2708601..>2709344) Sugiyamaella lignohabitans 30036725 AWJ20_4579 mRNA RPS7A NC_031671.1 2714649 2715227 R AWJ20_4579 complement(<2714649..>2715227) Sugiyamaella lignohabitans 30036726 AWJ20_4580 mRNA GAS1 NC_031671.1 2715738 2717111 R AWJ20_4580 complement(<2715738..>2717111) Sugiyamaella lignohabitans 30036728 AWJ20_4581 mRNA AWJ20_4581 NC_031671.1 2718433 2721131 R AWJ20_4581 complement(join(<2718433..2721009,2721084..>2721131)) Sugiyamaella lignohabitans 30036729 AWJ20_4582 mRNA AWJ20_4582 NC_031671.1 2721530 2723809 R AWJ20_4582 complement(<2721530..>2723809) Sugiyamaella lignohabitans 30036730 AWJ20_4583 mRNA AWJ20_4583 NC_031671.1 2724494 2726104 R AWJ20_4583 complement(<2724494..>2726104) Sugiyamaella lignohabitans 30036731 AWJ20_4584 mRNA AWJ20_4584 NC_031671.1 2726526 2728148 D AWJ20_4584 <2726526..>2728148 Sugiyamaella lignohabitans 30036732 AWJ20_4585 mRNA HXT15 NC_031671.1 2728533 2729387 R AWJ20_4585 complement(<2728533..>2729387) Sugiyamaella lignohabitans 30036733 AWJ20_4586 mRNA STL1 NC_031671.1 2729426 2729995 R AWJ20_4586 complement(<2729426..>2729995) Sugiyamaella lignohabitans 30036734 AWJ20_4587 mRNA AWJ20_4587 NC_031671.1 2731471 2732364 D AWJ20_4587 <2731471..>2732364 Sugiyamaella lignohabitans 30036735 AWJ20_4588 mRNA OPT2 NC_031671.1 2736543 2739098 D AWJ20_4588 <2736543..>2739098 Sugiyamaella lignohabitans 30036736 AWJ20_4589 mRNA NEW1 NC_031671.1 2739449 2742892 D AWJ20_4589 <2739449..>2742892 Sugiyamaella lignohabitans 30036737 AWJ20_4590 mRNA AWJ20_4590 NC_031671.1 2743022 2743840 R AWJ20_4590 complement(<2743022..>2743840) Sugiyamaella lignohabitans 30036739 AWJ20_4591 mRNA AWJ20_4591 NC_031671.1 2744634 2745035 D AWJ20_4591 <2744634..>2745035 Sugiyamaella lignohabitans 30036740 AWJ20_4592 mRNA MMT2 NC_031671.1 2745304 2746527 R AWJ20_4592 complement(<2745304..>2746527) Sugiyamaella lignohabitans 30036741 AWJ20_4593 mRNA AWJ20_4593 NC_031671.1 2747206 2749467 R AWJ20_4593 complement(<2747206..>2749467) Sugiyamaella lignohabitans 30036742 AWJ20_4594 mRNA ECM5 NC_031671.1 2749531 2752437 R AWJ20_4594 complement(<2749531..>2752437) Sugiyamaella lignohabitans 30036743 AWJ20_4595 mRNA DDR48 NC_031671.1 2753375 2754001 R AWJ20_4595 complement(<2753375..>2754001) Sugiyamaella lignohabitans 30036744 AWJ20_4596 mRNA PLB2 NC_031671.1 2757703 2759595 D AWJ20_4596 <2757703..>2759595 Sugiyamaella lignohabitans 30036745 AWJ20_4597 mRNA MIM1 NC_031671.1 2759870 2760211 R AWJ20_4597 complement(<2759870..>2760211) Sugiyamaella lignohabitans 30036746 AWJ20_4598 mRNA HAT2 NC_031671.1 2760635 2761792 D AWJ20_4598 <2760635..>2761792 Sugiyamaella lignohabitans 30036747 AWJ20_4599 mRNA LCB3 NC_031671.1 2762025 2763458 R AWJ20_4599 complement(<2762025..>2763458) Sugiyamaella lignohabitans 30036748 AWJ20_4600 mRNA RHO1 NC_031671.1 2764924 2765853 D AWJ20_4600 <2764924..>2765853 Sugiyamaella lignohabitans 30036751 AWJ20_4601 mRNA AWJ20_4601 NC_031671.1 2766832 2767485 D AWJ20_4601 <2766832..>2767485 Sugiyamaella lignohabitans 30036752 AWJ20_4602 mRNA HFD1 NC_031671.1 2768436 2770007 D AWJ20_4602 <2768436..>2770007 Sugiyamaella lignohabitans 30036753 AWJ20_4603 mRNA PRP31 NC_031671.1 2770180 2771883 D AWJ20_4603 <2770180..>2771883 Sugiyamaella lignohabitans 30036754 AWJ20_4605 mRNA AWJ20_4605 NC_031673.1 9063 9809 R AWJ20_4605 complement(<9063..>9809) Sugiyamaella lignohabitans 30036756 AWJ20_4606 mRNA POL92 NC_031673.1 10902 14051 R AWJ20_4606 complement(<10902..>14051) Sugiyamaella lignohabitans 30036757 AWJ20_4608 mRNA STR2 NC_031673.1 16659 18428 D AWJ20_4608 <16659..>18428 Sugiyamaella lignohabitans 30036759 AWJ20_4609 mRNA AWJ20_4609 NC_031673.1 20297 20980 R AWJ20_4609 complement(<20297..>20980) Sugiyamaella lignohabitans 30036760 AWJ20_4610 mRNA DAL2 NC_031673.1 22086 23129 D AWJ20_4610 <22086..>23129 Sugiyamaella lignohabitans 30036762 AWJ20_4611 mRNA MNS1 NC_031673.1 25250 27241 R AWJ20_4611 complement(<25250..>27241) Sugiyamaella lignohabitans 30036763 AWJ20_4612 mRNA AWJ20_4612 NC_031673.1 28542 29183 R AWJ20_4612 complement(<28542..>29183) Sugiyamaella lignohabitans 30036764 AWJ20_4613 mRNA AWJ20_4613 NC_031673.1 30080 30913 D AWJ20_4613 <30080..>30913 Sugiyamaella lignohabitans 30036765 AWJ20_4614 mRNA POL4 NC_031673.1 32007 33749 D AWJ20_4614 <32007..>33749 Sugiyamaella lignohabitans 30036766 AWJ20_4615 mRNA SCS2 NC_031673.1 37366 38799 D AWJ20_4615 join(<37366..37399,37772..>38799) Sugiyamaella lignohabitans 30036767 AWJ20_4616 mRNA MAP2 NC_031673.1 39107 40453 R AWJ20_4616 complement(<39107..>40453) Sugiyamaella lignohabitans 30036768 AWJ20_4617 mRNA MAL31 NC_031673.1 41803 43146 R AWJ20_4617 complement(<41803..>43146) Sugiyamaella lignohabitans 30036769 AWJ20_4618 mRNA DES1 NC_031673.1 44455 45597 D AWJ20_4618 <44455..>45597 Sugiyamaella lignohabitans 30036770 AWJ20_4619 mRNA AWJ20_4619 NC_031673.1 48199 49290 D AWJ20_4619 <48199..>49290 Sugiyamaella lignohabitans 30036771 AWJ20_4620 mRNA RAD9 NC_031673.1 50474 53815 D AWJ20_4620 <50474..>53815 Sugiyamaella lignohabitans 30036773 AWJ20_4621 mRNA TDA9 NC_031673.1 58577 62152 D AWJ20_4621 <58577..>62152 Sugiyamaella lignohabitans 30036774 AWJ20_4622 mRNA AWJ20_4622 NC_031673.1 62322 66023 R AWJ20_4622 complement(<62322..>66023) Sugiyamaella lignohabitans 30036775 AWJ20_4623 mRNA AWJ20_4623 NC_031673.1 66204 66434 R AWJ20_4623 complement(<66204..>66434) Sugiyamaella lignohabitans 30036776 AWJ20_4624 mRNA AWJ20_4624 NC_031673.1 69670 71322 D AWJ20_4624 <69670..>71322 Sugiyamaella lignohabitans 30036777 AWJ20_4625 mRNA PGK1 NC_031673.1 73083 74557 D AWJ20_4625 join(<73083..73152,73371..>74557) Sugiyamaella lignohabitans 30036778 AWJ20_4626 mRNA GYP5 NC_031673.1 76568 79138 D AWJ20_4626 <76568..>79138 Sugiyamaella lignohabitans 30036779 AWJ20_4627 mRNA VPS29 NC_031673.1 80554 81120 D AWJ20_4627 <80554..>81120 Sugiyamaella lignohabitans 30036780 AWJ20_4628 mRNA SHM2 NC_031673.1 82014 83429 R AWJ20_4628 complement(<82014..>83429) Sugiyamaella lignohabitans 30036781 AWJ20_4629 mRNA AWJ20_4629 NC_031673.1 84309 85184 R AWJ20_4629 complement(<84309..>85184) Sugiyamaella lignohabitans 30036782 AWJ20_4630 mRNA AWJ20_4630 NC_031673.1 88864 91776 D AWJ20_4630 <88864..>91776 Sugiyamaella lignohabitans 30036784 AWJ20_4631 mRNA STI1 NC_031673.1 92091 93134 D AWJ20_4631 <92091..>93134 Sugiyamaella lignohabitans 30036785 AWJ20_4632 mRNA YIH1 NC_031673.1 93618 94421 D AWJ20_4632 <93618..>94421 Sugiyamaella lignohabitans 30036786 AWJ20_4633 mRNA PWP2 NC_031673.1 95708 98530 D AWJ20_4633 <95708..>98530 Sugiyamaella lignohabitans 30036787 AWJ20_4634 mRNA CTR86 NC_031673.1 99978 101096 D AWJ20_4634 <99978..>101096 Sugiyamaella lignohabitans 30036788 AWJ20_4635 mRNA AWJ20_4635 NC_031673.1 101252 103252 R AWJ20_4635 complement(<101252..>103252) Sugiyamaella lignohabitans 30036789 AWJ20_4636 mRNA AWJ20_4636 NC_031673.1 104652 106517 R AWJ20_4636 complement(<104652..>106517) Sugiyamaella lignohabitans 30036790 AWJ20_4637 mRNA PRO2 NC_031673.1 108419 109786 D AWJ20_4637 <108419..>109786 Sugiyamaella lignohabitans 30036791 AWJ20_4638 mRNA DRS2 NC_031673.1 109973 112303 R AWJ20_4638 complement(<109973..>112303) Sugiyamaella lignohabitans 30036792 AWJ20_4639 mRNA DRS2 NC_031673.1 112477 114270 R AWJ20_4639 complement(<112477..>114270) Sugiyamaella lignohabitans 30036793 AWJ20_4640 mRNA MNN10 NC_031673.1 121028 122083 D AWJ20_4640 <121028..>122083 Sugiyamaella lignohabitans 30036795 AWJ20_4641 mRNA ENV9 NC_031673.1 123523 124443 R AWJ20_4641 complement(<123523..>124443) Sugiyamaella lignohabitans 30036796 AWJ20_4642 mRNA SWI1 NC_031673.1 126168 130211 D AWJ20_4642 <126168..>130211 Sugiyamaella lignohabitans 30036797 AWJ20_4643 mRNA RAD1 NC_031673.1 130280 133468 R AWJ20_4643 complement(<130280..>133468) Sugiyamaella lignohabitans 30036798 AWJ20_4644 mRNA PEX29 NC_031673.1 134318 136012 D AWJ20_4644 <134318..>136012 Sugiyamaella lignohabitans 30036799 AWJ20_4645 mRNA ADE6 NC_031673.1 136122 140093 R AWJ20_4645 complement(<136122..>140093) Sugiyamaella lignohabitans 30036800 AWJ20_4646 mRNA AWJ20_4646 NC_031673.1 140749 141036 D AWJ20_4646 <140749..>141036 Sugiyamaella lignohabitans 30036801 AWJ20_4647 mRNA TWF1 NC_031673.1 142946 143905 D AWJ20_4647 <142946..>143905 Sugiyamaella lignohabitans 30036802 AWJ20_4648 mRNA SFC1 NC_031673.1 144144 144980 R AWJ20_4648 complement(<144144..>144980) Sugiyamaella lignohabitans 30036803 AWJ20_4649 mRNA RSC9 NC_031673.1 150734 152857 D AWJ20_4649 <150734..>152857 Sugiyamaella lignohabitans 30036804 AWJ20_4650 mRNA AWJ20_4650 NC_031673.1 155378 155926 D AWJ20_4650 <155378..>155926 Sugiyamaella lignohabitans 30036806 AWJ20_4651 mRNA AWJ20_4651 NC_031673.1 158555 159265 R AWJ20_4651 complement(<158555..>159265) Sugiyamaella lignohabitans 30036807 AWJ20_4652 mRNA AWJ20_4652 NC_031673.1 160555 162177 D AWJ20_4652 <160555..>162177 Sugiyamaella lignohabitans 30036808 AWJ20_4653 mRNA RCF1 NC_031673.1 162426 162887 R AWJ20_4653 complement(<162426..>162887) Sugiyamaella lignohabitans 30036809 AWJ20_4654 mRNA GUK1 NC_031673.1 163421 163678 R AWJ20_4654 complement(<163421..>163678) Sugiyamaella lignohabitans 30036810 AWJ20_4655 mRNA AWJ20_4655 NC_031673.1 164583 165614 D AWJ20_4655 <164583..>165614 Sugiyamaella lignohabitans 30036811 AWJ20_4656 mRNA CSR1 NC_031673.1 168708 170060 D AWJ20_4656 <168708..>170060 Sugiyamaella lignohabitans 30036812 AWJ20_4657 mRNA AWJ20_4657 NC_031673.1 172055 172846 D AWJ20_4657 <172055..>172846 Sugiyamaella lignohabitans 30036813 AWJ20_4658 mRNA MCH5 NC_031673.1 174040 174744 D AWJ20_4658 <174040..>174744 Sugiyamaella lignohabitans 30036814 AWJ20_4659 mRNA MCH5 NC_031673.1 174814 175548 D AWJ20_4659 <174814..>175548 Sugiyamaella lignohabitans 30036815 AWJ20_4660 mRNA PMU1 NC_031673.1 177061 177663 R AWJ20_4660 complement(<177061..>177663) Sugiyamaella lignohabitans 30036817 AWJ20_4662 mRNA HSP30 NC_031673.1 181907 182890 D AWJ20_4662 <181907..>182890 Sugiyamaella lignohabitans 30036818 AWJ20_4663 mRNA NTG2 NC_031673.1 183038 184132 R AWJ20_4663 complement(<183038..>184132) Sugiyamaella lignohabitans 30036819 AWJ20_4664 mRNA CCR4 NC_031673.1 184427 186664 R AWJ20_4664 complement(<184427..>186664) Sugiyamaella lignohabitans 30036820 AWJ20_4665 mRNA TSA1 NC_031673.1 189102 189683 D AWJ20_4665 <189102..>189683 Sugiyamaella lignohabitans 30036821 AWJ20_4666 mRNA VAC7 NC_031673.1 189995 193624 R AWJ20_4666 complement(<189995..>193624) Sugiyamaella lignohabitans 30036822 AWJ20_4667 mRNA SWE1 NC_031673.1 195708 198686 D AWJ20_4667 <195708..>198686 Sugiyamaella lignohabitans 30036823 AWJ20_4668 mRNA SWE1 NC_031673.1 198718 199479 D AWJ20_4668 <198718..>199479 Sugiyamaella lignohabitans 30036824 AWJ20_4669 mRNA SYP1 NC_031673.1 202093 205500 D AWJ20_4669 <202093..>205500 Sugiyamaella lignohabitans 30036825 AWJ20_4670 mRNA MAK16 NC_031673.1 205760 206533 R AWJ20_4670 complement(<205760..>206533) Sugiyamaella lignohabitans 30036827 AWJ20_4671 mRNA AWJ20_4671 NC_031673.1 208769 211453 D AWJ20_4671 <208769..>211453 Sugiyamaella lignohabitans 30036828 AWJ20_4672 mRNA BEM3 NC_031673.1 212643 217349 D AWJ20_4672 <212643..>217349 Sugiyamaella lignohabitans 30036829 AWJ20_4673 mRNA LIP5 NC_031673.1 217620 218831 R AWJ20_4673 complement(<217620..>218831) Sugiyamaella lignohabitans 30036830 AWJ20_4674 mRNA AWJ20_4674 NC_031673.1 218227 218514 D AWJ20_4674 <218227..>218514 Sugiyamaella lignohabitans 30036831 AWJ20_4675 mRNA CAR1 NC_031673.1 222116 223063 D AWJ20_4675 <222116..>223063 Sugiyamaella lignohabitans 30036832 AWJ20_4676 mRNA HOS3 NC_031673.1 225880 228504 R AWJ20_4676 complement(<225880..>228504) Sugiyamaella lignohabitans 30036833 AWJ20_4677 mRNA AWJ20_4677 NC_031673.1 229381 230076 D AWJ20_4677 <229381..>230076 Sugiyamaella lignohabitans 30036834 AWJ20_4678 mRNA MNL1 NC_031673.1 230292 232610 R AWJ20_4678 complement(<230292..>232610) Sugiyamaella lignohabitans 30036835 AWJ20_4679 mRNA RPS4A NC_031673.1 235127 235852 D AWJ20_4679 <235127..>235852 Sugiyamaella lignohabitans 30036836 AWJ20_4680 mRNA AWJ20_4680 NC_031673.1 236320 238320 R AWJ20_4680 complement(<236320..>238320) Sugiyamaella lignohabitans 30036838 AWJ20_4681 mRNA MGM101 NC_031673.1 240136 241248 D AWJ20_4681 <240136..>241248 Sugiyamaella lignohabitans 30036839 AWJ20_4682 mRNA AWJ20_4682 NC_031673.1 241986 243131 D AWJ20_4682 <241986..>243131 Sugiyamaella lignohabitans 30036840 AWJ20_4683 mRNA AWJ20_4683 NC_031673.1 244559 244903 D AWJ20_4683 <244559..>244903 Sugiyamaella lignohabitans 30036841 AWJ20_4684 mRNA RCF2 NC_031673.1 247121 247855 D AWJ20_4684 <247121..>247855 Sugiyamaella lignohabitans 30036842 AWJ20_4685 mRNA TUF1 NC_031673.1 248524 249822 R AWJ20_4685 complement(<248524..>249822) Sugiyamaella lignohabitans 30036843 AWJ20_4686 mRNA PRC1 NC_031673.1 256171 257940 D AWJ20_4686 <256171..>257940 Sugiyamaella lignohabitans 30036844 AWJ20_4687 mRNA AWJ20_4687 NC_031673.1 258967 259344 R AWJ20_4687 complement(<258967..>259344) Sugiyamaella lignohabitans 30036845 AWJ20_4688 mRNA TPD3 NC_031673.1 262449 264314 R AWJ20_4688 complement(<262449..>264314) Sugiyamaella lignohabitans 30036846 AWJ20_4689 mRNA NUO1 NC_031673.1 267515 268207 D AWJ20_4689 <267515..>268207 Sugiyamaella lignohabitans 30036847 AWJ20_4690 mRNA AWJ20_4690 NC_031673.1 275781 276900 R AWJ20_4690 complement(join(<275781..276779,276898..>276900)) Sugiyamaella lignohabitans 30036849 AWJ20_4691 mRNA AWJ20_4691 NC_031673.1 278236 279282 R AWJ20_4691 complement(<278236..>279282) Sugiyamaella lignohabitans 30036850 AWJ20_4692 mRNA AWJ20_4692 NC_031673.1 280105 280569 R AWJ20_4692 complement(<280105..>280569) Sugiyamaella lignohabitans 30036851 AWJ20_4693 mRNA AWJ20_4693 NC_031673.1 281151 281639 R AWJ20_4693 complement(<281151..>281639) Sugiyamaella lignohabitans 30036852 AWJ20_4694 mRNA MTM1 NC_031673.1 284118 285305 R AWJ20_4694 complement(<284118..>285305) Sugiyamaella lignohabitans 30036853 AWJ20_4695 mRNA KOG1 NC_031673.1 287332 291078 D AWJ20_4695 <287332..>291078 Sugiyamaella lignohabitans 30036854 AWJ20_4696 mRNA LTV1 NC_031673.1 291263 292501 R AWJ20_4696 complement(<291263..>292501) Sugiyamaella lignohabitans 30036855 AWJ20_4697 mRNA AVT3 NC_031673.1 292889 295288 R AWJ20_4697 complement(<292889..>295288) Sugiyamaella lignohabitans 30036856 AWJ20_4698 mRNA RPC25 NC_031673.1 296807 297172 R AWJ20_4698 complement(<296807..>297172) Sugiyamaella lignohabitans 30036857 AWJ20_4699 mRNA SDH1 NC_031673.1 299330 301162 D AWJ20_4699 <299330..>301162 Sugiyamaella lignohabitans 30036858 AWJ20_4700 mRNA PSF1 NC_031673.1 301515 302012 D AWJ20_4700 <301515..>302012 Sugiyamaella lignohabitans 30036861 AWJ20_4701 mRNA RPT1 NC_031673.1 303013 304329 D AWJ20_4701 <303013..>304329 Sugiyamaella lignohabitans 30036862 AWJ20_4703 mRNA DBR1 NC_031673.1 304987 306528 R AWJ20_4703 complement(<304987..>306528) Sugiyamaella lignohabitans 30036864 AWJ20_4704 mRNA BFR2 NC_031673.1 307101 308591 D AWJ20_4704 <307101..>308591 Sugiyamaella lignohabitans 30036865 AWJ20_4705 mRNA MCR1 NC_031673.1 311296 311814 R AWJ20_4705 complement(<311296..>311814) Sugiyamaella lignohabitans 30036866 AWJ20_4706 mRNA AWJ20_4706 NC_031673.1 314138 314962 D AWJ20_4706 <314138..>314962 Sugiyamaella lignohabitans 30036867 AWJ20_4707 mRNA AWJ20_4707 NC_031673.1 315195 315932 R AWJ20_4707 complement(<315195..>315932) Sugiyamaella lignohabitans 30036868 AWJ20_4708 mRNA CBF1 NC_031673.1 316979 317716 R AWJ20_4708 complement(<316979..>317716) Sugiyamaella lignohabitans 30036869 AWJ20_4710 mRNA BRN1 NC_031673.1 319055 321037 R AWJ20_4710 complement(<319055..>321037) Sugiyamaella lignohabitans 30036872 AWJ20_4711 mRNA IME4 NC_031673.1 321891 323192 D AWJ20_4711 <321891..>323192 Sugiyamaella lignohabitans 30036873 AWJ20_4712 mRNA CUL3 NC_031673.1 324452 327079 D AWJ20_4712 <324452..>327079 Sugiyamaella lignohabitans 30036874 AWJ20_4713 mRNA AWJ20_4713 NC_031673.1 327291 328283 R AWJ20_4713 complement(<327291..>328283) Sugiyamaella lignohabitans 30036875 AWJ20_4714 mRNA RPS17B NC_031673.1 330502 330918 R AWJ20_4714 complement(<330502..>330918) Sugiyamaella lignohabitans 30036876 AWJ20_4715 mRNA ADA2 NC_031673.1 332839 334332 D AWJ20_4715 <332839..>334332 Sugiyamaella lignohabitans 30036877 AWJ20_4716 mRNA AWJ20_4716 NC_031673.1 334548 335276 R AWJ20_4716 complement(<334548..>335276) Sugiyamaella lignohabitans 30036878 AWJ20_4717 mRNA UTP6 NC_031673.1 337729 338937 R AWJ20_4717 complement(<337729..>338937) Sugiyamaella lignohabitans 30036879 AWJ20_4718 mRNA AMF1 NC_031673.1 339974 341797 D AWJ20_4718 <339974..>341797 Sugiyamaella lignohabitans 30036880 AWJ20_4719 mRNA YPK1 NC_031673.1 343594 346173 R AWJ20_4719 complement(join(<343594..345933,346144..>346173)) Sugiyamaella lignohabitans 30036881 AWJ20_4720 mRNA HSL1 NC_031673.1 352921 356430 D AWJ20_4720 <352921..>356430 Sugiyamaella lignohabitans 30036883 AWJ20_4721 mRNA NAM9 NC_031673.1 356877 358460 D AWJ20_4721 <356877..>358460 Sugiyamaella lignohabitans 30036884 AWJ20_4722 mRNA SRV2 NC_031673.1 358683 360675 R AWJ20_4722 complement(join(<358683..360369,360614..>360675)) Sugiyamaella lignohabitans 30036885 AWJ20_4723 mRNA ARP5 NC_031673.1 361197 363431 D AWJ20_4723 <361197..>363431 Sugiyamaella lignohabitans 30036886 AWJ20_4725 mRNA NCL1 NC_031673.1 364114 365994 R AWJ20_4725 complement(<364114..>365994) Sugiyamaella lignohabitans 30036888 AWJ20_4726 mRNA GCD10 NC_031673.1 366366 367721 D AWJ20_4726 <366366..>367721 Sugiyamaella lignohabitans 30036889 AWJ20_4727 mRNA MTQ1 NC_031673.1 367873 368628 R AWJ20_4727 complement(<367873..>368628) Sugiyamaella lignohabitans 30036890 AWJ20_4728 mRNA AWJ20_4728 NC_031673.1 369392 370609 D AWJ20_4728 <369392..>370609 Sugiyamaella lignohabitans 30036891 AWJ20_4729 mRNA PPH21 NC_031673.1 370763 371788 R AWJ20_4729 complement(<370763..>371788) Sugiyamaella lignohabitans 30036892 AWJ20_4730 mRNA TAF12 NC_031673.1 374864 376864 D AWJ20_4730 <374864..>376864 Sugiyamaella lignohabitans 30036894 AWJ20_4731 mRNA AWJ20_4731 NC_031673.1 377202 377861 R AWJ20_4731 complement(<377202..>377861) Sugiyamaella lignohabitans 30036895 AWJ20_4732 mRNA SNF7 NC_031673.1 379854 380492 D AWJ20_4732 <379854..>380492 Sugiyamaella lignohabitans 30036896 AWJ20_4733 mRNA SED5 NC_031673.1 380498 382045 R AWJ20_4733 complement(<380498..>382045) Sugiyamaella lignohabitans 30036897 AWJ20_4734 mRNA AWJ20_4734 NC_031673.1 383190 384938 D AWJ20_4734 <383190..>384938 Sugiyamaella lignohabitans 30036898 AWJ20_4735 mRNA AWJ20_4735 NC_031673.1 386967 387689 D AWJ20_4735 <386967..>387689 Sugiyamaella lignohabitans 30036899 AWJ20_4736 mRNA RSM24 NC_031673.1 387936 388418 R AWJ20_4736 complement(<387936..>388418) Sugiyamaella lignohabitans 30036900 AWJ20_4737 mRNA RSM7 NC_031673.1 389936 390820 D AWJ20_4737 <389936..>390820 Sugiyamaella lignohabitans 30036901 AWJ20_4738 mRNA HMO1 NC_031673.1 393587 394708 D AWJ20_4738 join(<393587..393694,393767..>394708) Sugiyamaella lignohabitans 30036902 AWJ20_4739 mRNA ARE2 NC_031673.1 400511 402397 D AWJ20_4739 <400511..>402397 Sugiyamaella lignohabitans 30036903 AWJ20_4740 mRNA AWJ20_4740 NC_031673.1 403065 404108 R AWJ20_4740 complement(<403065..>404108) Sugiyamaella lignohabitans 30036905 AWJ20_4741 mRNA SKN7 NC_031673.1 404681 406552 R AWJ20_4741 complement(<404681..>406552) Sugiyamaella lignohabitans 30036906 AWJ20_4742 mRNA SCH9 NC_031673.1 412627 414981 R AWJ20_4742 complement(<412627..>414981) Sugiyamaella lignohabitans 30036907 AWJ20_4743 mRNA ALG1 NC_031673.1 417173 418498 R AWJ20_4743 complement(<417173..>418498) Sugiyamaella lignohabitans 30036908 AWJ20_4744 mRNA AWJ20_4744 NC_031673.1 419425 420120 R AWJ20_4744 complement(<419425..>420120) Sugiyamaella lignohabitans 30036909 AWJ20_4745 mRNA CMD1 NC_031673.1 419597 420163 D AWJ20_4745 <419597..>420163 Sugiyamaella lignohabitans 30036910 AWJ20_4746 mRNA AWJ20_4746 NC_031673.1 424057 427372 D AWJ20_4746 join(<424057..424204,424335..>427372) Sugiyamaella lignohabitans 30036911 AWJ20_4747 mRNA AWJ20_4747 NC_031673.1 428316 429392 D AWJ20_4747 <428316..>429392 Sugiyamaella lignohabitans 30036912 AWJ20_4748 mRNA HRT3 NC_031673.1 429684 431108 R AWJ20_4748 complement(<429684..>431108) Sugiyamaella lignohabitans 30036913 AWJ20_4749 mRNA SPA2 NC_031673.1 434099 436300 D AWJ20_4749 <434099..>436300 Sugiyamaella lignohabitans 30036914 AWJ20_4750 mRNA SPA2 NC_031673.1 436538 437770 D AWJ20_4750 <436538..>437770 Sugiyamaella lignohabitans 30036916 AWJ20_4751 mRNA AMD2 NC_031673.1 438011 439675 R AWJ20_4751 complement(<438011..>439675) Sugiyamaella lignohabitans 30036917 AWJ20_4752 mRNA AWJ20_4752 NC_031673.1 442508 442924 R AWJ20_4752 complement(<442508..>442924) Sugiyamaella lignohabitans 30036918 AWJ20_4753 mRNA MRPL15 NC_031673.1 443791 444552 R AWJ20_4753 complement(<443791..>444552) Sugiyamaella lignohabitans 30036919 AWJ20_4754 mRNA ROK1 NC_031673.1 445059 446798 D AWJ20_4754 <445059..>446798 Sugiyamaella lignohabitans 30036920 AWJ20_4755 mRNA ATP20 NC_031673.1 447044 447526 R AWJ20_4755 complement(<447044..>447526) Sugiyamaella lignohabitans 30036921 AWJ20_4756 mRNA AWJ20_4756 NC_031673.1 448978 450198 D AWJ20_4756 <448978..>450198 Sugiyamaella lignohabitans 30036922 AWJ20_4757 mRNA FMO1 NC_031673.1 450577 452274 D AWJ20_4757 <450577..>452274 Sugiyamaella lignohabitans 30036923 AWJ20_4758 mRNA DUS1 NC_031673.1 452728 454086 D AWJ20_4758 <452728..>454086 Sugiyamaella lignohabitans 30036924 AWJ20_4759 mRNA cwf15 NC_031673.1 455674 456630 R AWJ20_4759 complement(<455674..>456630) Sugiyamaella lignohabitans 30036925 AWJ20_4760 mRNA NBP2 NC_031673.1 459024 460070 D AWJ20_4760 <459024..>460070 Sugiyamaella lignohabitans 30036927 AWJ20_4761 mRNA AWJ20_4761 NC_031673.1 460379 461458 R AWJ20_4761 complement(<460379..>461458) Sugiyamaella lignohabitans 30036928 AWJ20_4762 mRNA RLF2 NC_031673.1 461752 464247 R AWJ20_4762 complement(<461752..>464247) Sugiyamaella lignohabitans 30036929 AWJ20_4763 mRNA VPS70 NC_031673.1 465594 468080 R AWJ20_4763 complement(<465594..>468080) Sugiyamaella lignohabitans 30036930 AWJ20_4764 mRNA slx4 NC_031673.1 468452 471052 R AWJ20_4764 complement(<468452..>471052) Sugiyamaella lignohabitans 30036931 AWJ20_4765 mRNA CPR1 NC_031673.1 471658 472089 R AWJ20_4765 complement(<471658..>472089) Sugiyamaella lignohabitans 30036932 AWJ20_4766 mRNA ENT3 NC_031673.1 477114 478451 D AWJ20_4766 <477114..>478451 Sugiyamaella lignohabitans 30036933 AWJ20_4767 mRNA GIR2 NC_031673.1 478679 479569 R AWJ20_4767 complement(join(<478679..479334,479500..>479569)) Sugiyamaella lignohabitans 30036934 AWJ20_4768 mRNA MIF2 NC_031673.1 480189 482804 D AWJ20_4768 <480189..>482804 Sugiyamaella lignohabitans 30036935 AWJ20_4769 mRNA MCM4 NC_031673.1 483229 485949 D AWJ20_4769 <483229..>485949 Sugiyamaella lignohabitans 30036936 AWJ20_4770 mRNA SLS1 NC_031673.1 486060 488579 R AWJ20_4770 complement(<486060..>488579) Sugiyamaella lignohabitans 30036938 AWJ20_4771 mRNA rrn5 NC_031673.1 488843 490696 D AWJ20_4771 <488843..>490696 Sugiyamaella lignohabitans 30036939 AWJ20_4772 mRNA CRH1 NC_031673.1 492519 494135 D AWJ20_4772 <492519..>494135 Sugiyamaella lignohabitans 30036940 AWJ20_4773 mRNA AWJ20_4773 NC_031673.1 494344 495246 R AWJ20_4773 complement(<494344..>495246) Sugiyamaella lignohabitans 30036941 AWJ20_4774 mRNA ASH1 NC_031673.1 496087 497916 R AWJ20_4774 complement(<496087..>497916) Sugiyamaella lignohabitans 30036942 AWJ20_4775 mRNA AWJ20_4775 NC_031673.1 501045 501920 D AWJ20_4775 <501045..>501920 Sugiyamaella lignohabitans 30036943 AWJ20_4776 mRNA SGN1 NC_031673.1 502142 502729 R AWJ20_4776 complement(<502142..>502729) Sugiyamaella lignohabitans 30036944 AWJ20_4777 mRNA AWJ20_4777 NC_031673.1 505064 505726 D AWJ20_4777 <505064..>505726 Sugiyamaella lignohabitans 30036945 AWJ20_4778 mRNA RSM22 NC_031673.1 506179 508368 R AWJ20_4778 complement(<506179..>508368) Sugiyamaella lignohabitans 30036946 AWJ20_4779 mRNA FSH3 NC_031673.1 508852 509604 D AWJ20_4779 <508852..>509604 Sugiyamaella lignohabitans 30036947 AWJ20_4780 mRNA KEL1 NC_031673.1 511059 514622 R AWJ20_4780 complement(<511059..>514622) Sugiyamaella lignohabitans 30036949 AWJ20_4781 mRNA AWJ20_4781 NC_031673.1 514937 515938 R AWJ20_4781 complement(<514937..>515938) Sugiyamaella lignohabitans 30036950 AWJ20_4782 mRNA SFP1 NC_031673.1 521591 522196 R AWJ20_4782 complement(<521591..>522196) Sugiyamaella lignohabitans 30036951 AWJ20_4783 mRNA ADP1 NC_031673.1 529692 532442 R AWJ20_4783 complement(<529692..>532442) Sugiyamaella lignohabitans 30036952 AWJ20_4784 mRNA AWJ20_4784 NC_031673.1 536380 537141 R AWJ20_4784 complement(<536380..>537141) Sugiyamaella lignohabitans 30036953 AWJ20_4785 mRNA AWJ20_4785 NC_031673.1 537264 537707 R AWJ20_4785 complement(<537264..>537707) Sugiyamaella lignohabitans 30036954 AWJ20_4786 mRNA AWJ20_4786 NC_031673.1 538006 539226 R AWJ20_4786 complement(<538006..>539226) Sugiyamaella lignohabitans 30036955 AWJ20_4787 mRNA SWA2 NC_031673.1 548268 551057 D AWJ20_4787 <548268..>551057 Sugiyamaella lignohabitans 30036956 AWJ20_4788 mRNA TFB1 NC_031673.1 551288 553303 R AWJ20_4788 complement(<551288..>553303) Sugiyamaella lignohabitans 30036957 AWJ20_4789 mRNA SSZ1 NC_031673.1 553633 555303 D AWJ20_4789 <553633..>555303 Sugiyamaella lignohabitans 30036958 AWJ20_4790 mRNA PXA1 NC_031673.1 555554 558037 R AWJ20_4790 complement(<555554..>558037) Sugiyamaella lignohabitans 30036960 AWJ20_4792 mRNA KCH1 NC_031673.1 558873 561473 R AWJ20_4792 complement(<558873..>561473) Sugiyamaella lignohabitans 30036962 AWJ20_4793 mRNA PMT4 NC_031673.1 565732 567987 D AWJ20_4793 <565732..>567987 Sugiyamaella lignohabitans 30036963 AWJ20_4794 mRNA TFB3 NC_031673.1 569415 570353 D AWJ20_4794 <569415..>570353 Sugiyamaella lignohabitans 30036964 AWJ20_4795 mRNA RCR2 NC_031673.1 571975 572736 D AWJ20_4795 <571975..>572736 Sugiyamaella lignohabitans 30036965 AWJ20_4796 mRNA FOL2 NC_031673.1 573354 574247 R AWJ20_4796 complement(<573354..>574247) Sugiyamaella lignohabitans 30036966 AWJ20_4797 mRNA HUA1 NC_031673.1 577671 578729 R AWJ20_4797 complement(<577671..>578729) Sugiyamaella lignohabitans 30036967 AWJ20_4799 mRNA AWJ20_4799 NC_031673.1 586370 587032 R AWJ20_4799 complement(<586370..>587032) Sugiyamaella lignohabitans 30036969 AWJ20_4802 mRNA UGA1 NC_031673.1 595567 597051 R AWJ20_4802 complement(<595567..>597051) Sugiyamaella lignohabitans 30036974 AWJ20_4803 mRNA SET2 NC_031673.1 598643 601018 R AWJ20_4803 complement(<598643..>601018) Sugiyamaella lignohabitans 30036975 AWJ20_4804 mRNA AWJ20_4804 NC_031673.1 601398 602336 R AWJ20_4804 complement(<601398..>602336) Sugiyamaella lignohabitans 30036976 AWJ20_4805 mRNA ARC1 NC_031673.1 604056 604766 R AWJ20_4805 complement(<604056..>604766) Sugiyamaella lignohabitans 30036977 AWJ20_4806 mRNA AWJ20_4806 NC_031673.1 605389 608388 D AWJ20_4806 <605389..>608388 Sugiyamaella lignohabitans 30036978 AWJ20_4807 mRNA TFB4 NC_031673.1 608637 609689 R AWJ20_4807 complement(<608637..>609689) Sugiyamaella lignohabitans 30036979 AWJ20_4808 mRNA MRPL37 NC_031673.1 610680 611036 R AWJ20_4808 complement(<610680..>611036) Sugiyamaella lignohabitans 30036980 AWJ20_4809 mRNA LAS21 NC_031673.1 614858 617515 D AWJ20_4809 <614858..>617515 Sugiyamaella lignohabitans 30036981 AWJ20_4810 mRNA TAF5 NC_031673.1 619169 620080 D AWJ20_4810 <619169..>620080 Sugiyamaella lignohabitans 30036983 AWJ20_4811 mRNA MRP20 NC_031673.1 620369 621115 D AWJ20_4811 <620369..>621115 Sugiyamaella lignohabitans 30036984 AWJ20_4812 mRNA AWJ20_4812 NC_031673.1 621264 625349 R AWJ20_4812 complement(join(<621264..624717,625288..>625349)) Sugiyamaella lignohabitans 30036985 AWJ20_4813 mRNA AWJ20_4813 NC_031673.1 625102 626079 D AWJ20_4813 <625102..>626079 Sugiyamaella lignohabitans 30036986 AWJ20_4814 mRNA KTR4 NC_031673.1 627019 628272 D AWJ20_4814 <627019..>628272 Sugiyamaella lignohabitans 30036987 AWJ20_4815 mRNA AIP1 NC_031673.1 628441 629946 R AWJ20_4815 complement(<628441..>629946) Sugiyamaella lignohabitans 30036988 AWJ20_4816 mRNA DAL5 NC_031673.1 634464 634883 R AWJ20_4816 complement(<634464..>634883) Sugiyamaella lignohabitans 30036989 AWJ20_4817 mRNA DAL5 NC_031673.1 634933 636057 R AWJ20_4817 complement(<634933..>636057) Sugiyamaella lignohabitans 30036990 AWJ20_4818 mRNA DAL5 NC_031673.1 637482 638501 R AWJ20_4818 complement(<637482..>638501) Sugiyamaella lignohabitans 30036991 AWJ20_4819 mRNA UTP15 NC_031673.1 641504 642994 D AWJ20_4819 <641504..>642994 Sugiyamaella lignohabitans 30036992 AWJ20_4820 mRNA AWJ20_4820 NC_031673.1 643490 644761 R AWJ20_4820 complement(<643490..>644761) Sugiyamaella lignohabitans 30036994 AWJ20_4821 mRNA ATP25 NC_031673.1 645086 647341 D AWJ20_4821 <645086..>647341 Sugiyamaella lignohabitans 30036995 AWJ20_4822 mRNA AWJ20_4822 NC_031673.1 648028 648597 D AWJ20_4822 <648028..>648597 Sugiyamaella lignohabitans 30036996 AWJ20_4823 mRNA KTI12 NC_031673.1 648892 649743 R AWJ20_4823 complement(<648892..>649743) Sugiyamaella lignohabitans 30036997 AWJ20_4824 mRNA MTG1 NC_031673.1 650295 651395 D AWJ20_4824 <650295..>651395 Sugiyamaella lignohabitans 30036998 AWJ20_4825 mRNA POM33 NC_031673.1 654564 654869 D AWJ20_4825 <654564..>654869 Sugiyamaella lignohabitans 30036999 AWJ20_4826 mRNA ADI1 NC_031673.1 655610 656128 D AWJ20_4826 <655610..>656128 Sugiyamaella lignohabitans 30037000 AWJ20_4827 mRNA VPS53 NC_031673.1 663078 665963 D AWJ20_4827 <663078..>665963 Sugiyamaella lignohabitans 30037001 AWJ20_4828 mRNA PML1 NC_031673.1 666271 667101 R AWJ20_4828 complement(<666271..>667101) Sugiyamaella lignohabitans 30037002 AWJ20_4829 mRNA HCA4 NC_031673.1 667803 670199 D AWJ20_4829 <667803..>670199 Sugiyamaella lignohabitans 30037003 AWJ20_4830 mRNA TPP1 NC_031673.1 671459 672370 D AWJ20_4830 <671459..>672370 Sugiyamaella lignohabitans 30037005 AWJ20_4831 mRNA RPL9B NC_031673.1 672801 673370 R AWJ20_4831 complement(<672801..>673370) Sugiyamaella lignohabitans 30037006 AWJ20_4832 mRNA AWJ20_4832 NC_031673.1 673083 673424 D AWJ20_4832 <673083..>673424 Sugiyamaella lignohabitans 30037007 AWJ20_4833 mRNA AWJ20_4833 NC_031673.1 674426 675199 D AWJ20_4833 <674426..>675199 Sugiyamaella lignohabitans 30037008 AWJ20_4834 mRNA AWJ20_4834 NC_031673.1 675471 677702 R AWJ20_4834 complement(<675471..>677702) Sugiyamaella lignohabitans 30037009 AWJ20_4835 mRNA GET3 NC_031673.1 682334 683296 D AWJ20_4835 <682334..>683296 Sugiyamaella lignohabitans 30037010 AWJ20_4836 mRNA AWJ20_4836 NC_031673.1 683565 685508 R AWJ20_4836 complement(<683565..>685508) Sugiyamaella lignohabitans 30037011 AWJ20_4837 mRNA VPS35 NC_031673.1 686796 688427 R AWJ20_4837 complement(<686796..>688427) Sugiyamaella lignohabitans 30037012 AWJ20_4838 mRNA VPS35 NC_031673.1 688514 689552 R AWJ20_4838 complement(join(<688514..688525,688614..>689552)) Sugiyamaella lignohabitans 30037013 AWJ20_4839 mRNA AWJ20_4839 NC_031673.1 692048 694123 R AWJ20_4839 complement(<692048..>694123) Sugiyamaella lignohabitans 30037014 AWJ20_4840 mRNA TMA64 NC_031673.1 694829 696511 D AWJ20_4840 <694829..>696511 Sugiyamaella lignohabitans 30037016 AWJ20_4841 mRNA GPI17 NC_031673.1 696676 698139 R AWJ20_4841 complement(<696676..>698139) Sugiyamaella lignohabitans 30037017 AWJ20_4842 mRNA MRPL1 NC_031673.1 698456 699388 D AWJ20_4842 <698456..>699388 Sugiyamaella lignohabitans 30037018 AWJ20_4843 mRNA AWJ20_4843 NC_031673.1 703912 704730 D AWJ20_4843 <703912..>704730 Sugiyamaella lignohabitans 30037019 AWJ20_4844 mRNA PGM2 NC_031673.1 705691 707355 D AWJ20_4844 <705691..>707355 Sugiyamaella lignohabitans 30037020 AWJ20_4845 mRNA YKU80 NC_031673.1 707575 709068 R AWJ20_4845 complement(<707575..>709068) Sugiyamaella lignohabitans 30037021 AWJ20_4846 mRNA GAL7 NC_031673.1 709547 711244 R AWJ20_4846 complement(join(<709547..709550,709779..709792,710159..>711244)) Sugiyamaella lignohabitans 30037022 AWJ20_4847 mRNA SLD5 NC_031673.1 711932 712681 R AWJ20_4847 complement(<711932..>712681) Sugiyamaella lignohabitans 30037023 AWJ20_4848 mRNA AWJ20_4848 NC_031673.1 713518 715242 D AWJ20_4848 <713518..>715242 Sugiyamaella lignohabitans 30037024 AWJ20_4849 mRNA AWJ20_4849 NC_031673.1 715649 717979 R AWJ20_4849 complement(<715649..>717979) Sugiyamaella lignohabitans 30037025 AWJ20_4850 mRNA MUM2 NC_031673.1 719318 720154 D AWJ20_4850 <719318..>720154 Sugiyamaella lignohabitans 30037027 AWJ20_4851 mRNA AWJ20_4851 NC_031673.1 720467 722287 R AWJ20_4851 complement(<720467..>722287) Sugiyamaella lignohabitans 30037028 AWJ20_4852 mRNA ARO3 NC_031673.1 722631 723776 R AWJ20_4852 complement(<722631..>723776) Sugiyamaella lignohabitans 30037029 AWJ20_4853 mRNA AWJ20_4853 NC_031673.1 725223 726275 D AWJ20_4853 <725223..>726275 Sugiyamaella lignohabitans 30037030 AWJ20_4854 mRNA PWP1 NC_031673.1 726495 728198 R AWJ20_4854 complement(<726495..>728198) Sugiyamaella lignohabitans 30037031 AWJ20_4855 mRNA MSS4 NC_031673.1 730157 732340 D AWJ20_4855 <730157..>732340 Sugiyamaella lignohabitans 30037032 AWJ20_4856 mRNA NMT1 NC_031673.1 734400 735878 D AWJ20_4856 <734400..>735878 Sugiyamaella lignohabitans 30037033 AWJ20_4857 mRNA COX5A NC_031673.1 736235 736729 R AWJ20_4857 complement(<736235..>736729) Sugiyamaella lignohabitans 30037034 AWJ20_4858 mRNA MUP1 NC_031673.1 740999 742726 D AWJ20_4858 <740999..>742726 Sugiyamaella lignohabitans 30037035 AWJ20_4859 mRNA PSK2 NC_031673.1 742984 745986 R AWJ20_4859 complement(<742984..>745986) Sugiyamaella lignohabitans 30037036 AWJ20_4860 mRNA MON2 NC_031673.1 752760 756962 D AWJ20_4860 <752760..>756962 Sugiyamaella lignohabitans 30037038 AWJ20_4861 mRNA CHS3 NC_031673.1 757091 760846 R AWJ20_4861 complement(<757091..>760846) Sugiyamaella lignohabitans 30037039 AWJ20_4862 mRNA AWJ20_4862 NC_031673.1 763153 763563 R AWJ20_4862 complement(<763153..>763563) Sugiyamaella lignohabitans 30037040 AWJ20_4863 mRNA MSD1 NC_031673.1 764663 766093 R AWJ20_4863 complement(<764663..>766093) Sugiyamaella lignohabitans 30037041 AWJ20_4864 mRNA RPN11 NC_031673.1 767860 768792 D AWJ20_4864 <767860..>768792 Sugiyamaella lignohabitans 30037042 AWJ20_4865 mRNA SSE2 NC_031673.1 769241 771364 R AWJ20_4865 complement(<769241..>771364) Sugiyamaella lignohabitans 30037043 AWJ20_4866 mRNA NPL4 NC_031673.1 771842 773323 R AWJ20_4866 complement(<771842..>773323) Sugiyamaella lignohabitans 30037044 AWJ20_4867 mRNA bdc1 NC_031673.1 774150 776045 R AWJ20_4867 complement(<774150..>776045) Sugiyamaella lignohabitans 30037045 AWJ20_4868 mRNA SEC66 NC_031673.1 777130 777489 D AWJ20_4868 <777130..>777489 Sugiyamaella lignohabitans 30037046 AWJ20_4869 mRNA SMY2 NC_031673.1 780196 784647 R AWJ20_4869 complement(<780196..>784647) Sugiyamaella lignohabitans 30037047 AWJ20_4870 mRNA SAD1 NC_031673.1 785371 787437 D AWJ20_4870 <785371..>787437 Sugiyamaella lignohabitans 30037049 AWJ20_4871 mRNA UMP1 NC_031673.1 788160 788480 R AWJ20_4871 complement(<788160..>788480) Sugiyamaella lignohabitans 30037050 AWJ20_4872 mRNA PTC5 NC_031673.1 789365 790984 D AWJ20_4872 <789365..>790984 Sugiyamaella lignohabitans 30037051 AWJ20_4873 mRNA AWJ20_4873 NC_031673.1 791263 792141 R AWJ20_4873 complement(<791263..>792141) Sugiyamaella lignohabitans 30037052 AWJ20_4874 mRNA SIT1 NC_031673.1 793841 795592 D AWJ20_4874 <793841..>795592 Sugiyamaella lignohabitans 30037053 AWJ20_4875 mRNA AWJ20_4875 NC_031673.1 799253 800890 D AWJ20_4875 <799253..>800890 Sugiyamaella lignohabitans 30037054 AWJ20_4876 mRNA AWJ20_4876 NC_031673.1 800776 801924 R AWJ20_4876 complement(<800776..>801924) Sugiyamaella lignohabitans 30037055 AWJ20_4877 mRNA VPS21 NC_031673.1 802480 802965 R AWJ20_4877 complement(<802480..>802965) Sugiyamaella lignohabitans 30037056 AWJ20_4878 mRNA AWJ20_4878 NC_031673.1 806682 808730 R AWJ20_4878 complement(<806682..>808730) Sugiyamaella lignohabitans 30037057 AWJ20_4879 mRNA ICL1 NC_031673.1 811385 813019 D AWJ20_4879 <811385..>813019 Sugiyamaella lignohabitans 30037058 AWJ20_4880 mRNA RGD1 NC_031673.1 816619 818925 D AWJ20_4880 <816619..>818925 Sugiyamaella lignohabitans 30037060 AWJ20_4881 mRNA CUL3 NC_031673.1 819143 821929 R AWJ20_4881 complement(<819143..>821929) Sugiyamaella lignohabitans 30037061 AWJ20_4882 mRNA TRS33 NC_031673.1 825460 826128 D AWJ20_4882 <825460..>826128 Sugiyamaella lignohabitans 30037062 AWJ20_4883 mRNA OCA1 NC_031673.1 826385 827491 R AWJ20_4883 complement(<826385..>827491) Sugiyamaella lignohabitans 30037063 AWJ20_4884 mRNA RAS1 NC_031673.1 829550 830287 R AWJ20_4884 complement(<829550..>830287) Sugiyamaella lignohabitans 30037064 AWJ20_4885 mRNA PHO23 NC_031673.1 838397 840295 R AWJ20_4885 complement(<838397..>840295) Sugiyamaella lignohabitans 30037065 AWJ20_4886 mRNA AEP3 NC_031673.1 840788 842791 D AWJ20_4886 <840788..>842791 Sugiyamaella lignohabitans 30037066 AWJ20_4887 mRNA NCR1 NC_031673.1 846302 849751 D AWJ20_4887 <846302..>849751 Sugiyamaella lignohabitans 30037067 AWJ20_4889 mRNA HMT1 NC_031673.1 850799 851839 D AWJ20_4889 <850799..>851839 Sugiyamaella lignohabitans 30037069 AWJ20_4890 mRNA VHC1 NC_031673.1 852123 855020 R AWJ20_4890 complement(<852123..>855020) Sugiyamaella lignohabitans 30037071 AWJ20_4891 mRNA VHC1 NC_031673.1 855368 856006 R AWJ20_4891 complement(<855368..>856006) Sugiyamaella lignohabitans 30037072 AWJ20_4892 mRNA ABD1 NC_031673.1 857008 858786 R AWJ20_4892 complement(<857008..>858786) Sugiyamaella lignohabitans 30037073 AWJ20_4893 mRNA CMC1 NC_031673.1 865737 866093 R AWJ20_4893 complement(<865737..>866093) Sugiyamaella lignohabitans 30037074 AWJ20_4894 mRNA spc24 NC_031673.1 866778 867416 D AWJ20_4894 <866778..>867416 Sugiyamaella lignohabitans 30037075 AWJ20_4895 mRNA AWJ20_4895 NC_031673.1 867689 869290 R AWJ20_4895 complement(<867689..>869290) Sugiyamaella lignohabitans 30037076 AWJ20_4896 mRNA UTP11 NC_031673.1 869640 870392 D AWJ20_4896 <869640..>870392 Sugiyamaella lignohabitans 30037077 AWJ20_4897 mRNA HAS1 NC_031673.1 871443 873332 R AWJ20_4897 complement(<871443..>873332) Sugiyamaella lignohabitans 30037078 AWJ20_4898 mRNA SUV3 NC_031673.1 875646 877121 D AWJ20_4898 <875646..>877121 Sugiyamaella lignohabitans 30037079 AWJ20_4899 mRNA ARP2 NC_031673.1 877948 878958 D AWJ20_4899 <877948..>878958 Sugiyamaella lignohabitans 30037080 AWJ20_4900 mRNA AWJ20_4900 NC_031673.1 879174 880973 R AWJ20_4900 complement(<879174..>880973) Sugiyamaella lignohabitans 30037083 AWJ20_4902 mRNA hus1 NC_031673.1 884710 885375 D AWJ20_4902 <884710..>885375 Sugiyamaella lignohabitans 30037085 AWJ20_4903 mRNA SER1 NC_031673.1 885684 886841 R AWJ20_4903 complement(<885684..>886841) Sugiyamaella lignohabitans 30037086 AWJ20_4904 mRNA AWJ20_4904 NC_031673.1 888611 889315 D AWJ20_4904 <888611..>889315 Sugiyamaella lignohabitans 30037087 AWJ20_4905 mRNA BUD23 NC_031673.1 889958 890764 R AWJ20_4905 complement(<889958..>890764) Sugiyamaella lignohabitans 30037088 AWJ20_4906 mRNA VMA4 NC_031673.1 892332 893027 R AWJ20_4906 complement(<892332..>893027) Sugiyamaella lignohabitans 30037089 AWJ20_4907 mRNA AWJ20_4907 NC_031673.1 894757 895827 D AWJ20_4907 <894757..>895827 Sugiyamaella lignohabitans 30037090 AWJ20_4908 mRNA CSR1 NC_031673.1 899325 900770 D AWJ20_4908 <899325..>900770 Sugiyamaella lignohabitans 30037091 AWJ20_4909 mRNA APL5 NC_031673.1 903030 905768 D AWJ20_4909 <903030..>905768 Sugiyamaella lignohabitans 30037092 AWJ20_4910 mRNA RAD52 NC_031673.1 906218 907750 D AWJ20_4910 <906218..>907750 Sugiyamaella lignohabitans 30037094 AWJ20_4911 mRNA GCD7 NC_031673.1 907976 908749 R AWJ20_4911 complement(<907976..>908749) Sugiyamaella lignohabitans 30037095 AWJ20_4912 mRNA AWJ20_4912 NC_031673.1 909623 910453 D AWJ20_4912 <909623..>910453 Sugiyamaella lignohabitans 30037096 AWJ20_4913 mRNA JEN1 NC_031673.1 911509 912012 D AWJ20_4913 <911509..>912012 Sugiyamaella lignohabitans 30037097 AWJ20_4914 mRNA JEN1 NC_031673.1 912067 913065 D AWJ20_4914 <912067..>913065 Sugiyamaella lignohabitans 30037098 AWJ20_4915 mRNA AWJ20_4915 NC_031673.1 913920 914177 D AWJ20_4915 <913920..>914177 Sugiyamaella lignohabitans 30037099 AWJ20_4916 mRNA PRP8 NC_031673.1 914375 915817 R AWJ20_4916 complement(<914375..>915817) Sugiyamaella lignohabitans 30037100 AWJ20_4917 mRNA PRP8 NC_031673.1 916027 921720 R AWJ20_4917 complement(<916027..>921720) Sugiyamaella lignohabitans 30037101 AWJ20_4918 mRNA STS1 NC_031673.1 926261 927481 R AWJ20_4918 complement(<926261..>927481) Sugiyamaella lignohabitans 30037102 AWJ20_4919 mRNA THS1 NC_031673.1 928588 930895 D AWJ20_4919 join(<928588..928674,928835..>930895) Sugiyamaella lignohabitans 30037103 AWJ20_4920 mRNA SIF2 NC_031673.1 931120 932925 R AWJ20_4920 complement(<931120..>932925) Sugiyamaella lignohabitans 30037105 AWJ20_4921 mRNA EXO84 NC_031673.1 934139 936700 D AWJ20_4921 <934139..>936700 Sugiyamaella lignohabitans 30037106 AWJ20_4922 mRNA TRI1 NC_031673.1 937041 938000 R AWJ20_4922 complement(<937041..>938000) Sugiyamaella lignohabitans 30037107 AWJ20_4923 mRNA CAB2 NC_031673.1 938658 941835 R AWJ20_4923 complement(join(<938658..940304,940996..>941835)) Sugiyamaella lignohabitans 30037108 AWJ20_4924 mRNA PUB1 NC_031673.1 949197 950243 D AWJ20_4924 <949197..>950243 Sugiyamaella lignohabitans 30037109 AWJ20_4925 mRNA UBP1 NC_031673.1 951662 953401 D AWJ20_4925 <951662..>953401 Sugiyamaella lignohabitans 30037110 AWJ20_4926 mRNA GUT1 NC_031673.1 954209 955822 R AWJ20_4926 complement(<954209..>955822) Sugiyamaella lignohabitans 30037111 AWJ20_4927 mRNA AWJ20_4927 NC_031673.1 961417 962115 R AWJ20_4927 complement(<961417..>962115) Sugiyamaella lignohabitans 30037112 AWJ20_4928 mRNA FMP37 NC_031673.1 963337 963648 D AWJ20_4928 <963337..>963648 Sugiyamaella lignohabitans 30037113 AWJ20_4929 mRNA AWJ20_4929 NC_031673.1 963887 964933 R AWJ20_4929 complement(<963887..>964933) Sugiyamaella lignohabitans 30037114 AWJ20_4930 mRNA AWJ20_4930 NC_031673.1 965985 967706 R AWJ20_4930 complement(<965985..>967706) Sugiyamaella lignohabitans 30037116 AWJ20_4931 mRNA GEP4 NC_031673.1 968037 968618 R AWJ20_4931 complement(<968037..>968618) Sugiyamaella lignohabitans 30037117 AWJ20_4932 mRNA AWJ20_4932 NC_031673.1 972542 973846 R AWJ20_4932 complement(<972542..>973846) Sugiyamaella lignohabitans 30037118 AWJ20_4933 mRNA CRZ1 NC_031673.1 975920 979045 R AWJ20_4933 complement(<975920..>979045) Sugiyamaella lignohabitans 30037119 AWJ20_4934 mRNA GID7 NC_031673.1 982375 984192 D AWJ20_4934 <982375..>984192 Sugiyamaella lignohabitans 30037120 AWJ20_4935 mRNA ALO1 NC_031673.1 984745 986340 R AWJ20_4935 complement(<984745..>986340) Sugiyamaella lignohabitans 30037121 AWJ20_4936 mRNA AWJ20_4936 NC_031673.1 986836 988308 D AWJ20_4936 <986836..>988308 Sugiyamaella lignohabitans 30037122 AWJ20_4937 mRNA PHO84 NC_031673.1 994711 996717 D AWJ20_4937 <994711..>996717 Sugiyamaella lignohabitans 30037123 AWJ20_4938 mRNA CUS2 NC_031673.1 998023 998436 R AWJ20_4938 complement(<998023..>998436) Sugiyamaella lignohabitans 30037124 AWJ20_4939 mRNA CUS2 NC_031673.1 998592 999323 R AWJ20_4939 complement(<998592..>999323) Sugiyamaella lignohabitans 30037125 AWJ20_4940 mRNA TPO3 NC_031673.1 999602 1001269 R AWJ20_4940 complement(<999602..>1001269) Sugiyamaella lignohabitans 30037127 AWJ20_4941 mRNA AWJ20_4941 NC_031673.1 1003096 1003914 R AWJ20_4941 complement(<1003096..>1003914) Sugiyamaella lignohabitans 30037128 AWJ20_4942 mRNA AWJ20_4942 NC_031673.1 1010664 1012022 R AWJ20_4942 complement(<1010664..>1012022) Sugiyamaella lignohabitans 30037129 AWJ20_4943 mRNA STE11 NC_031673.1 1016263 1019097 R AWJ20_4943 complement(<1016263..>1019097) Sugiyamaella lignohabitans 30037130 AWJ20_4944 mRNA RAD16 NC_031673.1 1023031 1025604 D AWJ20_4944 <1023031..>1025604 Sugiyamaella lignohabitans 30037131 AWJ20_4946 mRNA SOR1 NC_031673.1 1026316 1027365 R AWJ20_4946 complement(<1026316..>1027365) Sugiyamaella lignohabitans 30037133 AWJ20_4947 mRNA LYP1 NC_031673.1 1030449 1032098 D AWJ20_4947 <1030449..>1032098 Sugiyamaella lignohabitans 30037134 AWJ20_4948 mRNA CHS3 NC_031673.1 1032380 1035931 R AWJ20_4948 complement(<1032380..>1035931) Sugiyamaella lignohabitans 30037135 AWJ20_4949 mRNA URH1 NC_031673.1 1037460 1038506 D AWJ20_4949 <1037460..>1038506 Sugiyamaella lignohabitans 30037136 AWJ20_4950 mRNA GAL11 NC_031673.1 1038815 1043804 R AWJ20_4950 complement(join(<1038815..1043134,1043463..1043527,1043699..>1043804)) Sugiyamaella lignohabitans 30037138 AWJ20_4951 mRNA YVC1 NC_031673.1 1048115 1050901 R AWJ20_4951 complement(<1048115..>1050901) Sugiyamaella lignohabitans 30037139 AWJ20_4952 mRNA SPS19 NC_031673.1 1052006 1052797 D AWJ20_4952 <1052006..>1052797 Sugiyamaella lignohabitans 30037140 AWJ20_4953 mRNA AWJ20_4953 NC_031673.1 1055821 1058106 D AWJ20_4953 <1055821..>1058106 Sugiyamaella lignohabitans 30037141 AWJ20_4954 mRNA GCN20 NC_031673.1 1058423 1060684 D AWJ20_4954 <1058423..>1060684 Sugiyamaella lignohabitans 30037142 AWJ20_4955 mRNA DIS3 NC_031673.1 1060860 1063883 R AWJ20_4955 complement(<1060860..>1063883) Sugiyamaella lignohabitans 30037143 AWJ20_4956 mRNA SKI8 NC_031673.1 1064005 1065479 D AWJ20_4956 join(<1064005..1064046,1064506..1064511,1064592..>1065479) Sugiyamaella lignohabitans 30037144 AWJ20_4957 mRNA PRP6 NC_031673.1 1066075 1069014 R AWJ20_4957 complement(<1066075..>1069014) Sugiyamaella lignohabitans 30037145 AWJ20_4958 mRNA ISW2 NC_031673.1 1069305 1072295 R AWJ20_4958 complement(<1069305..>1072295) Sugiyamaella lignohabitans 30037146 AWJ20_4959 mRNA HNM1 NC_031673.1 1077739 1079295 D AWJ20_4959 <1077739..>1079295 Sugiyamaella lignohabitans 30037147 AWJ20_4960 mRNA MYO5 NC_031673.1 1083035 1086493 D AWJ20_4960 <1083035..>1086493 Sugiyamaella lignohabitans 30037149 AWJ20_4962 mRNA SEO1 NC_031673.1 1088422 1090065 D AWJ20_4962 <1088422..>1090065 Sugiyamaella lignohabitans 30037151 AWJ20_4963 mRNA PAN3 NC_031673.1 1091776 1093512 D AWJ20_4963 <1091776..>1093512 Sugiyamaella lignohabitans 30037152 AWJ20_4964 mRNA CYB2 NC_031673.1 1097279 1099405 R AWJ20_4964 complement(join(<1097279..1097589,1098268..>1099405)) Sugiyamaella lignohabitans 30037153 AWJ20_4965 mRNA TAF11 NC_031673.1 1101852 1102523 D AWJ20_4965 <1101852..>1102523 Sugiyamaella lignohabitans 30037154 AWJ20_4966 mRNA SAC1 NC_031673.1 1102842 1105616 R AWJ20_4966 complement(<1102842..>1105616) Sugiyamaella lignohabitans 30037155 AWJ20_4967 mRNA CCT8 NC_031673.1 1106562 1108235 D AWJ20_4967 <1106562..>1108235 Sugiyamaella lignohabitans 30037156 AWJ20_4968 mRNA MSS4 NC_031673.1 1110950 1112794 R AWJ20_4968 complement(<1110950..>1112794) Sugiyamaella lignohabitans 30037157 AWJ20_4969 mRNA CDC11 NC_031673.1 1116892 1118268 D AWJ20_4969 <1116892..>1118268 Sugiyamaella lignohabitans 30037158 AWJ20_4970 mRNA SAT4 NC_031673.1 1118508 1122203 R AWJ20_4970 complement(<1118508..>1122203) Sugiyamaella lignohabitans 30037160 AWJ20_4971 mRNA KGD1 NC_031673.1 1128650 1131523 D AWJ20_4971 <1128650..>1131523 Sugiyamaella lignohabitans 30037161 AWJ20_4972 mRNA AWJ20_4972 NC_031673.1 1130657 1131256 R AWJ20_4972 complement(<1130657..>1131256) Sugiyamaella lignohabitans 30037162 AWJ20_4973 mRNA AWJ20_4973 NC_031673.1 1132153 1134036 R AWJ20_4973 complement(<1132153..>1134036) Sugiyamaella lignohabitans 30037163 AWJ20_4975 mRNA SCP1 NC_031673.1 1136414 1137226 D AWJ20_4975 <1136414..>1137226 Sugiyamaella lignohabitans 30037165 AWJ20_4976 mRNA AWJ20_4976 NC_031673.1 1137605 1138135 D AWJ20_4976 <1137605..>1138135 Sugiyamaella lignohabitans 30037166 AWJ20_4977 mRNA MIP1 NC_031673.1 1138305 1141826 R AWJ20_4977 complement(<1138305..>1141826) Sugiyamaella lignohabitans 30037167 AWJ20_4978 mRNA AWJ20_4978 NC_031673.1 1142699 1143340 D AWJ20_4978 <1142699..>1143340 Sugiyamaella lignohabitans 30037168 AWJ20_4979 mRNA OXR1 NC_031673.1 1143662 1144726 R AWJ20_4979 complement(<1143662..>1144726) Sugiyamaella lignohabitans 30037169 AWJ20_4980 mRNA PUT4 NC_031673.1 1145796 1146866 R AWJ20_4980 complement(<1145796..>1146866) Sugiyamaella lignohabitans 30037171 AWJ20_4981 mRNA PUT4 NC_031673.1 1147052 1147507 R AWJ20_4981 complement(<1147052..>1147507) Sugiyamaella lignohabitans 30037172 AWJ20_4982 mRNA MTW1 NC_031673.1 1150661 1151479 R AWJ20_4982 complement(<1150661..>1151479) Sugiyamaella lignohabitans 30037173 AWJ20_4983 mRNA RPA43 NC_031673.1 1153279 1154337 R AWJ20_4983 complement(<1153279..>1154337) Sugiyamaella lignohabitans 30037174 AWJ20_4984 mRNA RAD17 NC_031673.1 1154727 1155836 R AWJ20_4984 complement(<1154727..>1155836) Sugiyamaella lignohabitans 30037175 AWJ20_4985 mRNA MON1 NC_031673.1 1157332 1159215 D AWJ20_4985 <1157332..>1159215 Sugiyamaella lignohabitans 30037176 AWJ20_4986 mRNA RVB2 NC_031673.1 1160635 1161999 D AWJ20_4986 <1160635..>1161999 Sugiyamaella lignohabitans 30037177 AWJ20_4987 mRNA AWJ20_4987 NC_031673.1 1163439 1166153 R AWJ20_4987 complement(<1163439..>1166153) Sugiyamaella lignohabitans 30037178 AWJ20_4988 mRNA AWJ20_4988 NC_031673.1 1166461 1167495 R AWJ20_4988 complement(<1166461..>1167495) Sugiyamaella lignohabitans 30037179 AWJ20_4989 mRNA RBD2 NC_031673.1 1172739 1173266 D AWJ20_4989 <1172739..>1173266 Sugiyamaella lignohabitans 30037180 AWJ20_4990 mRNA MRPS17 NC_031673.1 1176584 1177312 D AWJ20_4990 <1176584..>1177312 Sugiyamaella lignohabitans 30037182 AWJ20_4991 mRNA MSS4 NC_031673.1 1179577 1181421 R AWJ20_4991 complement(<1179577..>1181421) Sugiyamaella lignohabitans 30037183 AWJ20_4992 mRNA SCD5 NC_031673.1 1183139 1185460 D AWJ20_4992 <1183139..>1185460 Sugiyamaella lignohabitans 30037184 AWJ20_4993 mRNA MIF2 NC_031673.1 1185846 1187318 D AWJ20_4993 <1185846..>1187318 Sugiyamaella lignohabitans 30037185 AWJ20_4994 mRNA ERG10 NC_031673.1 1187862 1189106 D AWJ20_4994 <1187862..>1189106 Sugiyamaella lignohabitans 30037186 AWJ20_4995 mRNA AWJ20_4995 NC_031673.1 1189309 1189893 D AWJ20_4995 <1189309..>1189893 Sugiyamaella lignohabitans 30037187 AWJ20_4996 mRNA EFR3 NC_031673.1 1190096 1193077 R AWJ20_4996 complement(<1190096..>1193077) Sugiyamaella lignohabitans 30037188 AWJ20_4997 mRNA AWJ20_4997 NC_031673.1 1194755 1196146 R AWJ20_4997 complement(<1194755..>1196146) Sugiyamaella lignohabitans 30037189 AWJ20_4998 mRNA MFG1 NC_031673.1 1197435 1199897 D AWJ20_4998 <1197435..>1199897 Sugiyamaella lignohabitans 30037190 AWJ20_4999 mRNA NOC4 NC_031673.1 1201849 1203513 D AWJ20_4999 <1201849..>1203513 Sugiyamaella lignohabitans 30037191 AWJ20_5000 mRNA TPC1 NC_031673.1 1203669 1204712 R AWJ20_5000 complement(<1203669..>1204712) Sugiyamaella lignohabitans 30037195 AWJ20_5001 mRNA SLP1 NC_031673.1 1205530 1208049 D AWJ20_5001 <1205530..>1208049 Sugiyamaella lignohabitans 30037196 AWJ20_5002 mRNA SPF1 NC_031673.1 1208183 1211647 R AWJ20_5002 complement(<1208183..>1211647) Sugiyamaella lignohabitans 30037197 AWJ20_5003 mRNA AWJ20_5003 NC_031673.1 1212590 1213033 D AWJ20_5003 <1212590..>1213033 Sugiyamaella lignohabitans 30037198 AWJ20_5004 mRNA POP7 NC_031673.1 1214219 1214854 D AWJ20_5004 <1214219..>1214854 Sugiyamaella lignohabitans 30037199 AWJ20_5005 mRNA AWJ20_5005 NC_031673.1 1217159 1219153 D AWJ20_5005 <1217159..>1219153 Sugiyamaella lignohabitans 30037200 AWJ20_5006 mRNA AWJ20_5006 NC_031673.1 1219535 1220914 D AWJ20_5006 <1219535..>1220914 Sugiyamaella lignohabitans 30037201 AWJ20_5007 mRNA AWJ20_5007 NC_031673.1 1220963 1223227 D AWJ20_5007 <1220963..>1223227 Sugiyamaella lignohabitans 30037202 AWJ20_5008 mRNA AWJ20_5008 NC_031673.1 1223272 1224567 R AWJ20_5008 complement(<1223272..>1224567) Sugiyamaella lignohabitans 30037203 AWJ20_5009 mRNA RPD3 NC_031673.1 1226117 1227433 R AWJ20_5009 complement(<1226117..>1227433) Sugiyamaella lignohabitans 30037204 AWJ20_5010 mRNA AWJ20_5010 NC_031673.1 1228442 1228822 D AWJ20_5010 <1228442..>1228822 Sugiyamaella lignohabitans 30037206 AWJ20_5011 mRNA SEC4 NC_031673.1 1229137 1229757 R AWJ20_5011 complement(<1229137..>1229757) Sugiyamaella lignohabitans 30037207 AWJ20_5012 mRNA FRS1 NC_031673.1 1231035 1232819 D AWJ20_5012 <1231035..>1232819 Sugiyamaella lignohabitans 30037208 AWJ20_5013 mRNA AWJ20_5013 NC_031673.1 1233180 1233944 D AWJ20_5013 <1233180..>1233944 Sugiyamaella lignohabitans 30037209 AWJ20_5014 mRNA AWJ20_5014 NC_031673.1 1233984 1236176 R AWJ20_5014 complement(<1233984..>1236176) Sugiyamaella lignohabitans 30037210 AWJ20_5015 mRNA SBA1 NC_031673.1 1238407 1238793 D AWJ20_5015 <1238407..>1238793 Sugiyamaella lignohabitans 30037211 AWJ20_5016 mRNA TMA46 NC_031673.1 1239003 1240046 R AWJ20_5016 complement(<1239003..>1240046) Sugiyamaella lignohabitans 30037212 AWJ20_5017 mRNA SWD3 NC_031673.1 1240271 1241281 D AWJ20_5017 <1240271..>1241281 Sugiyamaella lignohabitans 30037213 AWJ20_5018 mRNA AWJ20_5018 NC_031673.1 1241368 1242987 R AWJ20_5018 complement(<1241368..>1242987) Sugiyamaella lignohabitans 30037214 AWJ20_5019 mRNA AWJ20_5019 NC_031673.1 1248508 1249443 D AWJ20_5019 <1248508..>1249443 Sugiyamaella lignohabitans 30037215 AWJ20_5020 mRNA AMD2 NC_031673.1 1249516 1251216 R AWJ20_5020 complement(<1249516..>1251216) Sugiyamaella lignohabitans 30037217 AWJ20_5021 mRNA HEM13 NC_031673.1 1252932 1253921 R AWJ20_5021 complement(<1252932..>1253921) Sugiyamaella lignohabitans 30037218 AWJ20_5022 mRNA BMT5 NC_031673.1 1254180 1255046 D AWJ20_5022 <1254180..>1255046 Sugiyamaella lignohabitans 30037219 AWJ20_5023 mRNA FYV10 NC_031673.1 1255304 1256500 R AWJ20_5023 complement(<1255304..>1256500) Sugiyamaella lignohabitans 30037220 AWJ20_5024 mRNA COX15 NC_031673.1 1257027 1258418 D AWJ20_5024 <1257027..>1258418 Sugiyamaella lignohabitans 30037221 AWJ20_5025 mRNA EMP65 NC_031673.1 1258569 1260542 R AWJ20_5025 complement(<1258569..>1260542) Sugiyamaella lignohabitans 30037222 AWJ20_5026 mRNA FET3 NC_031673.1 1261350 1263032 D AWJ20_5026 <1261350..>1263032 Sugiyamaella lignohabitans 30037223 AWJ20_5027 mRNA NAB2 NC_031673.1 1263683 1265161 R AWJ20_5027 complement(<1263683..>1265161) Sugiyamaella lignohabitans 30037224 AWJ20_5028 mRNA AWJ20_5028 NC_031673.1 1269076 1269888 R AWJ20_5028 complement(<1269076..>1269888) Sugiyamaella lignohabitans 30037225 AWJ20_5029 mRNA HSP31 NC_031673.1 1271912 1272628 D AWJ20_5029 <1271912..>1272628 Sugiyamaella lignohabitans 30037226 AWJ20_5030 mRNA MRS2 NC_031673.1 1273705 1275372 D AWJ20_5030 <1273705..>1275372 Sugiyamaella lignohabitans 30037228 AWJ20_5031 mRNA IPL1 NC_031673.1 1276971 1277927 R AWJ20_5031 complement(<1276971..>1277927) Sugiyamaella lignohabitans 30037229 AWJ20_5032 mRNA AWJ20_5032 NC_031673.1 1278832 1281627 D AWJ20_5032 <1278832..>1281627 Sugiyamaella lignohabitans 30037230 AWJ20_5033 mRNA PCS60 NC_031673.1 1281796 1283331 R AWJ20_5033 complement(<1281796..>1283331) Sugiyamaella lignohabitans 30037231 AWJ20_5034 mRNA ISU1 NC_031673.1 1284960 1285469 D AWJ20_5034 <1284960..>1285469 Sugiyamaella lignohabitans 30037232 AWJ20_5035 mRNA CTK2 NC_031673.1 1287201 1287989 D AWJ20_5035 <1287201..>1287989 Sugiyamaella lignohabitans 30037233 AWJ20_5036 mRNA UBP14 NC_031673.1 1288165 1290303 R AWJ20_5036 complement(<1288165..>1290303) Sugiyamaella lignohabitans 30037234 AWJ20_5037 mRNA EHD3 NC_031673.1 1291121 1292614 R AWJ20_5037 complement(<1291121..>1292614) Sugiyamaella lignohabitans 30037235 AWJ20_5038 mRNA FAP7 NC_031673.1 1295898 1296617 D AWJ20_5038 join(<1295898..1295966,1296240..>1296617) Sugiyamaella lignohabitans 30037236 AWJ20_5039 mRNA BNA5 NC_031673.1 1296725 1298149 R AWJ20_5039 complement(<1296725..>1298149) Sugiyamaella lignohabitans 30037237 AWJ20_5040 mRNA GLT1 NC_031673.1 1298629 1305069 R AWJ20_5040 complement(<1298629..>1305069) Sugiyamaella lignohabitans 30037239 AWJ20_5041 mRNA MSS4 NC_031673.1 1309311 1311152 R AWJ20_5041 complement(<1309311..>1311152) Sugiyamaella lignohabitans 30037240 AWJ20_5042 mRNA AWJ20_5042 NC_031673.1 1319359 1320528 R AWJ20_5042 complement(<1319359..>1320528) Sugiyamaella lignohabitans 30037241 AWJ20_5043 mRNA TIF34 NC_031673.1 1327063 1328058 R AWJ20_5043 complement(<1327063..>1328058) Sugiyamaella lignohabitans 30037242 AWJ20_5044 mRNA AWJ20_5044 NC_031673.1 1328507 1329097 R AWJ20_5044 complement(<1328507..>1329097) Sugiyamaella lignohabitans 30037243 AWJ20_5045 mRNA POL92 NC_031673.1 1330201 1333344 R AWJ20_5045 complement(<1330201..>1333344) Sugiyamaella lignohabitans 30037244 AWJ20_5047 mRNA MNN10 NC_031673.1 1336069 1337496 D AWJ20_5047 <1336069..>1337496 Sugiyamaella lignohabitans 30037246 AWJ20_5048 mRNA AWJ20_5048 NC_031673.1 1337529 1339802 R AWJ20_5048 complement(<1337529..>1339802) Sugiyamaella lignohabitans 30037247 AWJ20_5049 mRNA AIR1 NC_031673.1 1340186 1340890 R AWJ20_5049 complement(<1340186..>1340890) Sugiyamaella lignohabitans 30037248 AWJ20_5050 mRNA ITR2 NC_031673.1 1342494 1344104 R AWJ20_5050 complement(<1342494..>1344104) Sugiyamaella lignohabitans 30037250 AWJ20_5051 mRNA AWJ20_5051 NC_031673.1 1345381 1346190 R AWJ20_5051 complement(<1345381..>1346190) Sugiyamaella lignohabitans 30037251 AWJ20_5052 mRNA YIM1 NC_031673.1 1346911 1347990 R AWJ20_5052 complement(<1346911..>1347990) Sugiyamaella lignohabitans 30037252 AWJ20_5053 mRNA RPS8B NC_031673.1 1348734 1349327 R AWJ20_5053 complement(<1348734..>1349327) Sugiyamaella lignohabitans 30037253 AWJ20_5054 mRNA TUL1 NC_031673.1 1350308 1353286 R AWJ20_5054 complement(<1350308..>1353286) Sugiyamaella lignohabitans 30037254 AWJ20_5055 mRNA AWJ20_5055 NC_031673.1 1355432 1355791 R AWJ20_5055 complement(<1355432..>1355791) Sugiyamaella lignohabitans 30037255 AWJ20_5056 mRNA AWJ20_5056 NC_031673.1 1356622 1357437 D AWJ20_5056 <1356622..>1357437 Sugiyamaella lignohabitans 30037256 AWJ20_5057 mRNA ISM1 NC_031673.1 1357696 1358889 R AWJ20_5057 complement(<1357696..>1358889) Sugiyamaella lignohabitans 30037257 AWJ20_5058 mRNA ISM1 NC_031673.1 1358988 1360775 R AWJ20_5058 complement(<1358988..>1360775) Sugiyamaella lignohabitans 30037258 AWJ20_5059 mRNA MRPL11 NC_031673.1 1361102 1361659 D AWJ20_5059 <1361102..>1361659 Sugiyamaella lignohabitans 30037259 AWJ20_5061 mRNA AWJ20_5061 NC_031673.1 1364424 1364921 R AWJ20_5061 complement(<1364424..>1364921) Sugiyamaella lignohabitans 30037262 AWJ20_5062 mRNA DUG3 NC_031673.1 1365514 1365948 R AWJ20_5062 complement(<1365514..>1365948) Sugiyamaella lignohabitans 30037263 AWJ20_5063 mRNA AWJ20_5063 NC_031673.1 1368489 1369106 D AWJ20_5063 <1368489..>1369106 Sugiyamaella lignohabitans 30037264 AWJ20_5064 mRNA ECM2 NC_031673.1 1369418 1370608 D AWJ20_5064 <1369418..>1370608 Sugiyamaella lignohabitans 30037265 AWJ20_5065 mRNA NFI1 NC_031673.1 1376232 1379345 D AWJ20_5065 <1376232..>1379345 Sugiyamaella lignohabitans 30037266 AWJ20_5066 mRNA PRE8 NC_031673.1 1380282 1380818 D AWJ20_5066 <1380282..>1380818 Sugiyamaella lignohabitans 30037267 AWJ20_5067 mRNA NCE103 NC_031673.1 1384627 1385268 D AWJ20_5067 <1384627..>1385268 Sugiyamaella lignohabitans 30037268 AWJ20_5068 mRNA NRG1 NC_031673.1 1393051 1395753 D AWJ20_5068 <1393051..>1395753 Sugiyamaella lignohabitans 30037269 AWJ20_5069 mRNA PDI1 NC_031673.1 1396657 1397757 D AWJ20_5069 <1396657..>1397757 Sugiyamaella lignohabitans 30037270 AWJ20_5070 mRNA APD1 NC_031673.1 1399263 1400159 R AWJ20_5070 complement(<1399263..>1400159) Sugiyamaella lignohabitans 30037272 AWJ20_5071 mRNA AWJ20_5071 NC_031673.1 1403071 1404102 D AWJ20_5071 <1403071..>1404102 Sugiyamaella lignohabitans 30037273 AWJ20_5072 mRNA AWJ20_5072 NC_031673.1 1404620 1406956 D AWJ20_5072 <1404620..>1406956 Sugiyamaella lignohabitans 30037274 AWJ20_5073 mRNA SUN4 NC_031673.1 1407424 1408662 R AWJ20_5073 complement(<1407424..>1408662) Sugiyamaella lignohabitans 30037275 AWJ20_5074 mRNA AWJ20_5074 NC_031673.1 1413920 1415080 R AWJ20_5074 complement(<1413920..>1415080) Sugiyamaella lignohabitans 30037276 AWJ20_5075 mRNA AWJ20_5075 NC_031673.1 1416370 1417551 R AWJ20_5075 complement(<1416370..>1417551) Sugiyamaella lignohabitans 30037277 AWJ20_5076 mRNA EGD2 NC_031673.1 1423991 1424656 D AWJ20_5076 <1423991..>1424656 Sugiyamaella lignohabitans 30037278 AWJ20_5077 mRNA PAB1 NC_031673.1 1427843 1429981 R AWJ20_5077 complement(<1427843..>1429981) Sugiyamaella lignohabitans 30037279 AWJ20_5078 mRNA CHD1 NC_031673.1 1431000 1434689 R AWJ20_5078 complement(<1431000..>1434689) Sugiyamaella lignohabitans 30037280 AWJ20_5079 mRNA AWJ20_5079 NC_031673.1 1434937 1435635 R AWJ20_5079 complement(<1434937..>1435635) Sugiyamaella lignohabitans 30037281 AWJ20_5080 mRNA ULP2 NC_031673.1 1438802 1442125 R AWJ20_5080 complement(<1438802..>1442125) Sugiyamaella lignohabitans 30037283 AWJ20_5081 mRNA TIM44 NC_031673.1 1446063 1447406 D AWJ20_5081 <1446063..>1447406 Sugiyamaella lignohabitans 30037284 AWJ20_5082 mRNA AWJ20_5082 NC_031673.1 1448631 1450565 D AWJ20_5082 <1448631..>1450565 Sugiyamaella lignohabitans 30037285 AWJ20_5083 mRNA AWJ20_5083 NC_031673.1 1450779 1452449 R AWJ20_5083 complement(<1450779..>1452449) Sugiyamaella lignohabitans 30037286 AWJ20_5084 mRNA DEP1 NC_031673.1 1454614 1456773 R AWJ20_5084 complement(<1454614..>1456773) Sugiyamaella lignohabitans 30037287 AWJ20_5085 mRNA DEG1 NC_031673.1 1462696 1464084 R AWJ20_5085 complement(<1462696..>1464084) Sugiyamaella lignohabitans 30037288 AWJ20_5086 mRNA SPB4 NC_031673.1 1464424 1466280 D AWJ20_5086 <1464424..>1466280 Sugiyamaella lignohabitans 30037289 AWJ20_5087 mRNA ULA1 NC_031673.1 1466507 1468246 R AWJ20_5087 complement(<1466507..>1468246) Sugiyamaella lignohabitans 30037290 AWJ20_5088 mRNA ROT1 NC_031673.1 1469864 1470355 D AWJ20_5088 <1469864..>1470355 Sugiyamaella lignohabitans 30037291 AWJ20_5089 mRNA TAF2 NC_031673.1 1470600 1473638 R AWJ20_5089 complement(<1470600..>1473638) Sugiyamaella lignohabitans 30037292 AWJ20_5090 mRNA TAF2 NC_031673.1 1474109 1475146 R AWJ20_5090 complement(<1474109..>1475146) Sugiyamaella lignohabitans 30037294 AWJ20_5091 mRNA YHC3 NC_031673.1 1476337 1476930 D AWJ20_5091 <1476337..>1476930 Sugiyamaella lignohabitans 30037295 AWJ20_5092 mRNA KRR1 NC_031673.1 1477993 1479015 R AWJ20_5092 complement(<1477993..>1479015) Sugiyamaella lignohabitans 30037296 AWJ20_5093 mRNA AWJ20_5093 NC_031673.1 1479953 1482139 R AWJ20_5093 complement(<1479953..>1482139) Sugiyamaella lignohabitans 30037297 AWJ20_5094 mRNA TGL5 NC_031673.1 1482466 1484550 R AWJ20_5094 complement(<1482466..>1484550) Sugiyamaella lignohabitans 30037298 AWJ20_5095 mRNA MNN4 NC_031673.1 1491826 1493994 D AWJ20_5095 <1491826..>1493994 Sugiyamaella lignohabitans 30037299 AWJ20_5096 mRNA UTR4 NC_031673.1 1495890 1496624 R AWJ20_5096 complement(<1495890..>1496624) Sugiyamaella lignohabitans 30037300 AWJ20_5097 mRNA AWJ20_5097 NC_031673.1 1503029 1504867 D AWJ20_5097 <1503029..>1504867 Sugiyamaella lignohabitans 30037301 AWJ20_5098 mRNA RAD7 NC_031673.1 1505353 1507269 D AWJ20_5098 <1505353..>1507269 Sugiyamaella lignohabitans 30037302 AWJ20_5099 mRNA HSF1 NC_031673.1 1508235 1510004 R AWJ20_5099 complement(<1508235..>1510004) Sugiyamaella lignohabitans 30037303 AWJ20_5100 mRNA PRE6 NC_031673.1 1517875 1519003 R AWJ20_5100 complement(join(<1517875..1518622,1518969..>1519003)) Sugiyamaella lignohabitans 30037306 AWJ20_5101 mRNA TAF5 NC_031673.1 1521156 1523582 D AWJ20_5101 <1521156..>1523582 Sugiyamaella lignohabitans 30037307 AWJ20_5102 mRNA CTR3 NC_031673.1 1527317 1527970 R AWJ20_5102 complement(<1527317..>1527970) Sugiyamaella lignohabitans 30037308 AWJ20_5103 mRNA SSD1 NC_031673.1 1532485 1536432 D AWJ20_5103 <1532485..>1536432 Sugiyamaella lignohabitans 30037309 AWJ20_5104 mRNA AWJ20_5104 NC_031673.1 1536771 1537838 R AWJ20_5104 complement(<1536771..>1537838) Sugiyamaella lignohabitans 30037310 AWJ20_5105 mRNA CDC55 NC_031673.1 1541544 1543007 D AWJ20_5105 <1541544..>1543007 Sugiyamaella lignohabitans 30037311 AWJ20_5106 mRNA COX13 NC_031673.1 1544028 1544444 R AWJ20_5106 complement(<1544028..>1544444) Sugiyamaella lignohabitans 30037312 AWJ20_5107 mRNA ATP1 NC_031673.1 1548638 1549984 D AWJ20_5107 <1548638..>1549984 Sugiyamaella lignohabitans 30037313 AWJ20_5109 mRNA AWJ20_5109 NC_031673.1 1554163 1555599 R AWJ20_5109 complement(<1554163..>1555599) Sugiyamaella lignohabitans 30037315 AWJ20_5110 mRNA RPC53 NC_031673.1 1557342 1558847 D AWJ20_5110 <1557342..>1558847 Sugiyamaella lignohabitans 30037317 AWJ20_5111 mRNA AWJ20_5111 NC_031673.1 1559801 1561648 R AWJ20_5111 complement(<1559801..>1561648) Sugiyamaella lignohabitans 30037318 AWJ20_5112 mRNA SLC1 NC_031673.1 1565870 1566709 D AWJ20_5112 <1565870..>1566709 Sugiyamaella lignohabitans 30037319 AWJ20_5113 mRNA NRK1 NC_031673.1 1567364 1567903 R AWJ20_5113 complement(<1567364..>1567903) Sugiyamaella lignohabitans 30037320 AWJ20_5114 mRNA RAT1 NC_031673.1 1570764 1573742 D AWJ20_5114 <1570764..>1573742 Sugiyamaella lignohabitans 30037321 AWJ20_5115 mRNA FAP1 NC_031673.1 1575627 1578083 D AWJ20_5115 <1575627..>1578083 Sugiyamaella lignohabitans 30037322 AWJ20_5116 mRNA AWJ20_5116 NC_031673.1 1578838 1579788 D AWJ20_5116 <1578838..>1579788 Sugiyamaella lignohabitans 30037323 AWJ20_5117 mRNA MCM10 NC_031673.1 1579842 1581485 R AWJ20_5117 complement(<1579842..>1581485) Sugiyamaella lignohabitans 30037324 AWJ20_5118 mRNA SFH5 NC_031673.1 1582019 1583014 R AWJ20_5118 complement(<1582019..>1583014) Sugiyamaella lignohabitans 30037325 AWJ20_5119 mRNA AWJ20_5119 NC_031673.1 1583698 1584600 D AWJ20_5119 <1583698..>1584600 Sugiyamaella lignohabitans 30037326 AWJ20_5120 mRNA HAP2 NC_031673.1 1586055 1586612 D AWJ20_5120 <1586055..>1586612 Sugiyamaella lignohabitans 30037328 AWJ20_5121 mRNA AWJ20_5121 NC_031673.1 1586919 1589549 R AWJ20_5121 complement(<1586919..>1589549) Sugiyamaella lignohabitans 30037329 AWJ20_5122 mRNA SFA1 NC_031673.1 1594729 1595850 D AWJ20_5122 <1594729..>1595850 Sugiyamaella lignohabitans 30037330 AWJ20_5123 mRNA CIA2 NC_031673.1 1596021 1596659 R AWJ20_5123 complement(<1596021..>1596659) Sugiyamaella lignohabitans 30037331 AWJ20_5124 mRNA MCM3 NC_031673.1 1599614 1602256 R AWJ20_5124 complement(<1599614..>1602256) Sugiyamaella lignohabitans 30037332 AWJ20_5125 mRNA YHB1 NC_031673.1 1603608 1604807 D AWJ20_5125 <1603608..>1604807 Sugiyamaella lignohabitans 30037333 AWJ20_5126 mRNA GPI1 NC_031673.1 1605283 1607430 D AWJ20_5126 <1605283..>1607430 Sugiyamaella lignohabitans 30037334 AWJ20_5127 mRNA VRG4 NC_031673.1 1607694 1608698 R AWJ20_5127 complement(<1607694..>1608698) Sugiyamaella lignohabitans 30037335 AWJ20_5128 mRNA MSH3 NC_031673.1 1609391 1612786 D AWJ20_5128 <1609391..>1612786 Sugiyamaella lignohabitans 30037336 AWJ20_5129 mRNA LYS12 NC_031673.1 1614395 1615261 D AWJ20_5129 <1614395..>1615261 Sugiyamaella lignohabitans 30037337 AWJ20_5130 mRNA SLX8 NC_031673.1 1616070 1617131 D AWJ20_5130 <1616070..>1617131 Sugiyamaella lignohabitans 30037339 AWJ20_5131 mRNA RCM1 NC_031673.1 1617493 1618575 R AWJ20_5131 complement(<1617493..>1618575) Sugiyamaella lignohabitans 30037340 AWJ20_5132 mRNA DML1 NC_031673.1 1619263 1620906 R AWJ20_5132 complement(<1619263..>1620906) Sugiyamaella lignohabitans 30037341 AWJ20_5133 mRNA RRP46 NC_031673.1 1622000 1622683 D AWJ20_5133 <1622000..>1622683 Sugiyamaella lignohabitans 30037342 AWJ20_5134 mRNA VAS1 NC_031673.1 1622987 1626175 R AWJ20_5134 complement(<1622987..>1626175) Sugiyamaella lignohabitans 30037343 AWJ20_5135 mRNA ECM16 NC_031673.1 1627122 1627409 D AWJ20_5135 <1627122..>1627409 Sugiyamaella lignohabitans 30037344 AWJ20_5136 mRNA ECM16 NC_031673.1 1627534 1630995 D AWJ20_5136 <1627534..>1630995 Sugiyamaella lignohabitans 30037345 AWJ20_5137 mRNA SSL1 NC_031673.1 1631185 1632660 R AWJ20_5137 complement(<1631185..>1632660) Sugiyamaella lignohabitans 30037346 AWJ20_5138 mRNA RSC58 NC_031673.1 1633472 1635358 D AWJ20_5138 <1633472..>1635358 Sugiyamaella lignohabitans 30037347 AWJ20_5139 mRNA SMF2 NC_031673.1 1636451 1639666 R AWJ20_5139 complement(<1636451..>1639666) Sugiyamaella lignohabitans 30037348 AWJ20_5140 mRNA NIP1 NC_031673.1 1641402 1644050 D AWJ20_5140 <1641402..>1644050 Sugiyamaella lignohabitans 30037350 AWJ20_5141 mRNA BLM10 NC_031673.1 1644374 1649617 R AWJ20_5141 complement(<1644374..>1649617) Sugiyamaella lignohabitans 30037351 AWJ20_5142 mRNA AWJ20_5142 NC_031673.1 1649661 1650494 R AWJ20_5142 complement(<1649661..>1650494) Sugiyamaella lignohabitans 30037352 AWJ20_5143 mRNA AWJ20_5143 NC_031673.1 1658066 1659751 R AWJ20_5143 complement(<1658066..>1659751) Sugiyamaella lignohabitans 30037353 AWJ20_5144 mRNA AWJ20_5144 NC_031673.1 1669610 1672813 R AWJ20_5144 complement(<1669610..>1672813) Sugiyamaella lignohabitans 30037354 AWJ20_5145 mRNA AWJ20_5145 NC_031673.1 1673656 1675533 R AWJ20_5145 complement(<1673656..>1675533) Sugiyamaella lignohabitans 30037355 AWJ20_5146 mRNA KIN2 NC_031673.1 1679282 1683403 D AWJ20_5146 <1679282..>1683403 Sugiyamaella lignohabitans 30037356 AWJ20_5147 mRNA AVO2 NC_031673.1 1683805 1685922 R AWJ20_5147 complement(<1683805..>1685922) Sugiyamaella lignohabitans 30037357 AWJ20_5148 mRNA SNZ1 NC_031673.1 1688655 1689542 D AWJ20_5148 <1688655..>1689542 Sugiyamaella lignohabitans 30037358 AWJ20_5149 mRNA AWJ20_5149 NC_031673.1 1688948 1689643 R AWJ20_5149 complement(<1688948..>1689643) Sugiyamaella lignohabitans 30037359 AWJ20_5152 mRNA RPL1A NC_031673.1 1693005 1693655 D AWJ20_5152 <1693005..>1693655 Sugiyamaella lignohabitans 30037363 AWJ20_5153 mRNA PCL7 NC_031673.1 1695329 1696837 D AWJ20_5153 <1695329..>1696837 Sugiyamaella lignohabitans 30037364 AWJ20_5154 mRNA AWJ20_5154 NC_031673.1 1697474 1698217 D AWJ20_5154 <1697474..>1698217 Sugiyamaella lignohabitans 30037365 AWJ20_5155 mRNA FLC1 NC_031673.1 1698471 1700603 R AWJ20_5155 complement(<1698471..>1700603) Sugiyamaella lignohabitans 30037366 AWJ20_5156 mRNA AWJ20_5156 NC_031673.1 1703965 1705815 D AWJ20_5156 <1703965..>1705815 Sugiyamaella lignohabitans 30037367 AWJ20_5157 mRNA CYS4 NC_031673.1 1709416 1710774 R AWJ20_5157 complement(<1709416..>1710774) Sugiyamaella lignohabitans 30037368 AWJ20_5158 mRNA AWJ20_5158 NC_031673.1 1711634 1712974 R AWJ20_5158 complement(<1711634..>1712974) Sugiyamaella lignohabitans 30037369 AWJ20_5159 mRNA AWJ20_5159 NC_031673.1 1714069 1715565 D AWJ20_5159 <1714069..>1715565 Sugiyamaella lignohabitans 30037370 AWJ20_5160 mRNA PET112 NC_031673.1 1715755 1716633 R AWJ20_5160 complement(<1715755..>1716633) Sugiyamaella lignohabitans 30037372 AWJ20_5161 mRNA APT1 NC_031673.1 1718502 1719035 D AWJ20_5161 <1718502..>1719035 Sugiyamaella lignohabitans 30037373 AWJ20_5162 mRNA KIN28 NC_031673.1 1719724 1720716 D AWJ20_5162 <1719724..>1720716 Sugiyamaella lignohabitans 30037374 AWJ20_5163 mRNA OST3 NC_031673.1 1721355 1722329 D AWJ20_5163 <1721355..>1722329 Sugiyamaella lignohabitans 30037375 AWJ20_5164 mRNA CYK3 NC_031673.1 1722533 1725772 R AWJ20_5164 complement(<1722533..>1725772) Sugiyamaella lignohabitans 30037376 AWJ20_5165 mRNA AWJ20_5165 NC_031673.1 1727485 1729965 D AWJ20_5165 <1727485..>1729965 Sugiyamaella lignohabitans 30037377 AWJ20_5166 mRNA AWJ20_5166 NC_031673.1 1730163 1731584 R AWJ20_5166 complement(<1730163..>1731584) Sugiyamaella lignohabitans 30037378 AWJ20_5167 mRNA AWJ20_5167 NC_031673.1 1732292 1733137 D AWJ20_5167 <1732292..>1733137 Sugiyamaella lignohabitans 30037379 AWJ20_5168 mRNA SSC1 NC_031673.1 1735763 1737736 R AWJ20_5168 complement(<1735763..>1737736) Sugiyamaella lignohabitans 30037380 AWJ20_5169 mRNA GDH2 NC_031673.1 1745564 1749026 D AWJ20_5169 join(<1745564..1745623,1746048..>1749026) Sugiyamaella lignohabitans 30037381 AWJ20_5170 mRNA FRE7 NC_031673.1 1749983 1752097 D AWJ20_5170 <1749983..>1752097 Sugiyamaella lignohabitans 30037383 AWJ20_5171 mRNA RRP12 NC_031673.1 1753151 1756465 D AWJ20_5171 <1753151..>1756465 Sugiyamaella lignohabitans 30037384 AWJ20_5172 mRNA AWJ20_5172 NC_031673.1 1761387 1763150 R AWJ20_5172 complement(<1761387..>1763150) Sugiyamaella lignohabitans 30037385 AWJ20_5173 mRNA AWJ20_5173 NC_031673.1 1766138 1768222 R AWJ20_5173 complement(<1766138..>1768222) Sugiyamaella lignohabitans 30037386 AWJ20_5174 mRNA AWJ20_5174 NC_031673.1 1769944 1772577 D AWJ20_5174 <1769944..>1772577 Sugiyamaella lignohabitans 30037387 AWJ20_5175 mRNA AWJ20_5175 NC_031673.1 1773145 1773702 R AWJ20_5175 complement(<1773145..>1773702) Sugiyamaella lignohabitans 30037388 AWJ20_5176 mRNA AWJ20_5176 NC_031673.1 1773761 1774207 R AWJ20_5176 complement(<1773761..>1774207) Sugiyamaella lignohabitans 30037389 AWJ20_5177 mRNA GDI1 NC_031673.1 1777269 1778714 R AWJ20_5177 complement(<1777269..>1778714) Sugiyamaella lignohabitans 30037390 AWJ20_5178 mRNA AWJ20_5178 NC_031673.1 1781313 1781744 R AWJ20_5178 complement(<1781313..>1781744) Sugiyamaella lignohabitans 30037391 AWJ20_5179 mRNA POM152 NC_031673.1 1782485 1785379 D AWJ20_5179 <1782485..>1785379 Sugiyamaella lignohabitans 30037392 AWJ20_5180 mRNA POM152 NC_031673.1 1785430 1786467 D AWJ20_5180 <1785430..>1786467 Sugiyamaella lignohabitans 30037394 AWJ20_5181 mRNA BMT6 NC_031673.1 1786964 1787953 D AWJ20_5181 <1786964..>1787953 Sugiyamaella lignohabitans 30037395 AWJ20_5182 mRNA AWJ20_5182 NC_031673.1 1790100 1790714 R AWJ20_5182 complement(<1790100..>1790714) Sugiyamaella lignohabitans 30037396 AWJ20_5183 mRNA RAD28 NC_031673.1 1791156 1792238 R AWJ20_5183 complement(<1791156..>1792238) Sugiyamaella lignohabitans 30037397 AWJ20_5184 mRNA MDM1 NC_031673.1 1792740 1796435 R AWJ20_5184 complement(<1792740..>1796435) Sugiyamaella lignohabitans 30037398 AWJ20_5185 mRNA AWJ20_5185 NC_031673.1 1806064 1806567 R AWJ20_5185 complement(<1806064..>1806567) Sugiyamaella lignohabitans 30037399 AWJ20_5186 mRNA PKC1 NC_031673.1 1806970 1807602 R AWJ20_5186 complement(<1806970..>1807602) Sugiyamaella lignohabitans 30037400 AWJ20_5187 mRNA NUP188 NC_031673.1 1808456 1812679 R AWJ20_5187 complement(<1808456..>1812679) Sugiyamaella lignohabitans 30037401 AWJ20_5188 mRNA AWJ20_5188 NC_031673.1 1814194 1814796 R AWJ20_5188 complement(<1814194..>1814796) Sugiyamaella lignohabitans 30037402 AWJ20_5189 mRNA AWJ20_5189 NC_031673.1 1815781 1816899 D AWJ20_5189 <1815781..>1816899 Sugiyamaella lignohabitans 30037403 AWJ20_5190 mRNA VMA8 NC_031673.1 1817142 1817780 R AWJ20_5190 complement(<1817142..>1817780) Sugiyamaella lignohabitans 30037405 AWJ20_5191 mRNA DUR1,2 NC_031673.1 1820562 1826050 D AWJ20_5191 join(<1820562..1820744,1820813..>1826050) Sugiyamaella lignohabitans 30037406 AWJ20_5192 mRNA CAB3 NC_031673.1 1826378 1827538 R AWJ20_5192 complement(<1826378..>1827538) Sugiyamaella lignohabitans 30037407 AWJ20_5193 mRNA AWJ20_5193 NC_031673.1 1832043 1832771 R AWJ20_5193 complement(<1832043..>1832771) Sugiyamaella lignohabitans 30037408 AWJ20_5194 mRNA YPK9 NC_031673.1 1833688 1838067 R AWJ20_5194 complement(<1833688..>1838067) Sugiyamaella lignohabitans 30037409 AWJ20_5195 mRNA AWJ20_5195 NC_031673.1 1838946 1840478 R AWJ20_5195 complement(<1838946..>1840478) Sugiyamaella lignohabitans 30037410 AWJ20_5196 mRNA ERG5 NC_031673.1 1841848 1843425 D AWJ20_5196 <1841848..>1843425 Sugiyamaella lignohabitans 30037411 AWJ20_5197 mRNA AWJ20_5197 NC_031673.1 1845245 1847062 R AWJ20_5197 complement(<1845245..>1847062) Sugiyamaella lignohabitans 30037412 AWJ20_5198 mRNA TNA1 NC_031673.1 1847615 1849027 R AWJ20_5198 complement(<1847615..>1849027) Sugiyamaella lignohabitans 30037413 AWJ20_5199 mRNA JLP1 NC_031673.1 1850007 1851191 R AWJ20_5199 complement(<1850007..>1851191) Sugiyamaella lignohabitans 30037414 AWJ20_5200 mRNA AFG1 NC_031673.1 1852165 1853433 R AWJ20_5200 complement(<1852165..>1853433) Sugiyamaella lignohabitans 30037417 AWJ20_5201 mRNA AWJ20_5201 NC_031673.1 1855682 1857529 D AWJ20_5201 <1855682..>1857529 Sugiyamaella lignohabitans 30037418 AWJ20_5202 mRNA CDC11 NC_031673.1 1859091 1859846 D AWJ20_5202 <1859091..>1859846 Sugiyamaella lignohabitans 30037419 AWJ20_5203 mRNA AWJ20_5203 NC_031673.1 1860082 1861047 R AWJ20_5203 complement(<1860082..>1861047) Sugiyamaella lignohabitans 30037420 AWJ20_5204 mRNA ENV9 NC_031673.1 1861941 1862891 R AWJ20_5204 complement(<1861941..>1862891) Sugiyamaella lignohabitans 30037421 AWJ20_5205 mRNA EXG2 NC_031673.1 1869293 1871614 R AWJ20_5205 complement(<1869293..>1871614) Sugiyamaella lignohabitans 30037422 AWJ20_5206 mRNA AWJ20_5206 NC_031673.1 1874709 1876517 R AWJ20_5206 complement(<1874709..>1876517) Sugiyamaella lignohabitans 30037423 AWJ20_5207 mRNA MLP1 NC_031673.1 1881191 1886689 D AWJ20_5207 join(<1881191..1883932,1883996..>1886689) Sugiyamaella lignohabitans 30037424 AWJ20_5208 mRNA MCD4 NC_031673.1 1886804 1889521 R AWJ20_5208 complement(<1886804..>1889521) Sugiyamaella lignohabitans 30037425 AWJ20_5209 mRNA SIS1 NC_031673.1 1889982 1892521 R AWJ20_5209 complement(join(<1889982..1892362,1892485..>1892521)) Sugiyamaella lignohabitans 30037426 AWJ20_5210 mRNA DGK1 NC_031673.1 1897418 1898851 D AWJ20_5210 <1897418..>1898851 Sugiyamaella lignohabitans 30037428 AWJ20_5211 mRNA AWJ20_5211 NC_031673.1 1899589 1900881 D AWJ20_5211 <1899589..>1900881 Sugiyamaella lignohabitans 30037429 AWJ20_5212 mRNA RRP1 NC_031673.1 1902110 1902886 D AWJ20_5212 <1902110..>1902886 Sugiyamaella lignohabitans 30037430 AWJ20_5213 mRNA AWJ20_5213 NC_031673.1 1903203 1904081 R AWJ20_5213 complement(<1903203..>1904081) Sugiyamaella lignohabitans 30037431 AWJ20_5214 mRNA OPT1 NC_031673.1 1906158 1908227 D AWJ20_5214 <1906158..>1908227 Sugiyamaella lignohabitans 30037432 AWJ20_5215 mRNA AWJ20_5215 NC_031673.1 1908316 1909158 R AWJ20_5215 complement(<1908316..>1909158) Sugiyamaella lignohabitans 30037433 AWJ20_5216 mRNA AYT1 NC_031673.1 1910000 1911424 D AWJ20_5216 <1910000..>1911424 Sugiyamaella lignohabitans 30037434 AWJ20_5218 mRNA ITT1 NC_031673.1 1912246 1913682 D AWJ20_5218 <1912246..>1913682 Sugiyamaella lignohabitans 30037436 AWJ20_5219 mRNA PRP40 NC_031673.1 1915556 1918030 D AWJ20_5219 <1915556..>1918030 Sugiyamaella lignohabitans 30037437 AWJ20_5220 mRNA UBP6 NC_031673.1 1919705 1921246 D AWJ20_5220 <1919705..>1921246 Sugiyamaella lignohabitans 30037439 AWJ20_5221 mRNA MIC19 NC_031673.1 1921470 1921928 R AWJ20_5221 complement(<1921470..>1921928) Sugiyamaella lignohabitans 30037440 AWJ20_5222 mRNA AWJ20_5222 NC_031673.1 1923377 1924099 R AWJ20_5222 complement(<1923377..>1924099) Sugiyamaella lignohabitans 30037441 AWJ20_5223 mRNA ADH3 NC_031673.1 1926166 1927194 D AWJ20_5223 <1926166..>1927194 Sugiyamaella lignohabitans 30037442 AWJ20_5224 mRNA AWJ20_5224 NC_031673.1 1931245 1933992 D AWJ20_5224 <1931245..>1933992 Sugiyamaella lignohabitans 30037443 AWJ20_5225 mRNA PRC1 NC_031673.1 1934138 1935235 R AWJ20_5225 complement(<1934138..>1935235) Sugiyamaella lignohabitans 30037444 AWJ20_5226 mRNA PEP12 NC_031673.1 1935904 1936704 R AWJ20_5226 complement(<1935904..>1936704) Sugiyamaella lignohabitans 30037445 AWJ20_5227 mRNA POL1 NC_031673.1 1937331 1940384 R AWJ20_5227 complement(<1937331..>1940384) Sugiyamaella lignohabitans 30037446 AWJ20_5228 mRNA AWJ20_5228 NC_031673.1 1941178 1941591 R AWJ20_5228 complement(<1941178..>1941591) Sugiyamaella lignohabitans 30037447 AWJ20_5229 mRNA AWJ20_5229 NC_031673.1 1941980 1942939 R AWJ20_5229 complement(<1941980..>1942939) Sugiyamaella lignohabitans 30037448 AWJ20_5233 mRNA TNA1 NC_031673.1 1945093 1946583 R AWJ20_5233 complement(<1945093..>1946583) Sugiyamaella lignohabitans 30037453 AWJ20_5234 mRNA AWJ20_5234 NC_031673.1 1947581 1948819 D AWJ20_5234 <1947581..>1948819 Sugiyamaella lignohabitans 30037454 AWJ20_5235 mRNA HSP78 NC_031673.1 1949070 1951544 R AWJ20_5235 complement(<1949070..>1951544) Sugiyamaella lignohabitans 30037455 AWJ20_5236 mRNA RIM21 NC_031673.1 1951989 1954046 R AWJ20_5236 complement(<1951989..>1954046) Sugiyamaella lignohabitans 30037456 AWJ20_5237 mRNA MNN2 NC_031673.1 1954660 1956675 R AWJ20_5237 complement(<1954660..>1956675) Sugiyamaella lignohabitans 30037457 AWJ20_5238 mRNA ECI1 NC_031673.1 1958266 1959093 D AWJ20_5238 <1958266..>1959093 Sugiyamaella lignohabitans 30037458 AWJ20_5239 mRNA AWJ20_5239 NC_031673.1 1959303 1960808 R AWJ20_5239 complement(<1959303..>1960808) Sugiyamaella lignohabitans 30037459 AWJ20_5240 mRNA COQ3 NC_031673.1 1961658 1962368 D AWJ20_5240 <1961658..>1962368 Sugiyamaella lignohabitans 30037461 AWJ20_5241 mRNA VPS60 NC_031673.1 1962733 1963380 R AWJ20_5241 complement(<1962733..>1963380) Sugiyamaella lignohabitans 30037462 AWJ20_5242 mRNA AWJ20_5242 NC_031673.1 1966207 1966980 R AWJ20_5242 complement(<1966207..>1966980) Sugiyamaella lignohabitans 30037463 AWJ20_5243 mRNA AGX1 NC_031673.1 1968320 1969477 D AWJ20_5243 <1968320..>1969477 Sugiyamaella lignohabitans 30037464 AWJ20_5244 mRNA AWJ20_5244 NC_031673.1 1969549 1971270 R AWJ20_5244 complement(<1969549..>1971270) Sugiyamaella lignohabitans 30037465 AWJ20_5245 mRNA AWJ20_5245 NC_031673.1 1971658 1973214 D AWJ20_5245 <1971658..>1973214 Sugiyamaella lignohabitans 30037466 AWJ20_5246 mRNA AWJ20_5246 NC_031673.1 1973341 1974048 D AWJ20_5246 <1973341..>1974048 Sugiyamaella lignohabitans 30037467 AWJ20_5247 mRNA PSD2 NC_031673.1 1974100 1976328 R AWJ20_5247 complement(<1974100..>1976328) Sugiyamaella lignohabitans 30037468 AWJ20_5248 mRNA BCS1 NC_031673.1 1978947 1980374 R AWJ20_5248 complement(<1978947..>1980374) Sugiyamaella lignohabitans 30037469 AWJ20_5249 mRNA UBP2 NC_031673.1 1981210 1984851 D AWJ20_5249 <1981210..>1984851 Sugiyamaella lignohabitans 30037470 AWJ20_5250 mRNA UBP2 NC_031673.1 1985006 1985377 D AWJ20_5250 <1985006..>1985377 Sugiyamaella lignohabitans 30037472 AWJ20_5251 mRNA VPS74 NC_031673.1 1985584 1986657 R AWJ20_5251 complement(<1985584..>1986657) Sugiyamaella lignohabitans 30037473 AWJ20_5252 mRNA AWJ20_5252 NC_031673.1 1987824 1989152 R AWJ20_5252 complement(<1987824..>1989152) Sugiyamaella lignohabitans 30037474 AWJ20_5253 mRNA CHL1 NC_031673.1 1989927 1992401 D AWJ20_5253 <1989927..>1992401 Sugiyamaella lignohabitans 30037475 AWJ20_5254 mRNA NIC96 NC_031673.1 1992594 1995707 D AWJ20_5254 join(<1992594..1992856,1992980..>1995707) Sugiyamaella lignohabitans 30037476 AWJ20_5255 mRNA ADH2 NC_031673.1 1996374 1997465 D AWJ20_5255 <1996374..>1997465 Sugiyamaella lignohabitans 30037477 AWJ20_5256 mRNA ADD66 NC_031673.1 1999213 1999980 R AWJ20_5256 complement(<1999213..>1999980) Sugiyamaella lignohabitans 30037478 AWJ20_5257 mRNA AWJ20_5257 NC_031673.1 2001917 2008141 D AWJ20_5257 <2001917..>2008141 Sugiyamaella lignohabitans 30037479 AWJ20_5258 mRNA AWJ20_5258 NC_031673.1 2006239 2007839 R AWJ20_5258 complement(join(<2006239..2007728,2007806..>2007839)) Sugiyamaella lignohabitans 30037480 AWJ20_5259 mRNA NPA3 NC_031673.1 2008591 2009703 D AWJ20_5259 <2008591..>2009703 Sugiyamaella lignohabitans 30037481 AWJ20_5260 mRNA AWJ20_5260 NC_031673.1 2009969 2012332 R AWJ20_5260 complement(<2009969..>2012332) Sugiyamaella lignohabitans 30037483 AWJ20_5261 mRNA CAC2 NC_031673.1 2013096 2017221 R AWJ20_5261 complement(join(<2013096..2014384,2015004..>2017221)) Sugiyamaella lignohabitans 30037484 AWJ20_5262 mRNA AWJ20_5262 NC_031673.1 2018762 2019919 D AWJ20_5262 <2018762..>2019919 Sugiyamaella lignohabitans 30037485 AWJ20_5263 mRNA PTA1 NC_031673.1 2020706 2022898 D AWJ20_5263 <2020706..>2022898 Sugiyamaella lignohabitans 30037486 AWJ20_5264 mRNA AWJ20_5264 NC_031673.1 2023086 2025368 R AWJ20_5264 complement(<2023086..>2025368) Sugiyamaella lignohabitans 30037487 AWJ20_5265 mRNA AWJ20_5265 NC_031673.1 2026346 2028184 D AWJ20_5265 <2026346..>2028184 Sugiyamaella lignohabitans 30037488 AWJ20_5266 mRNA AIP1 NC_031673.1 2028373 2029860 R AWJ20_5266 complement(<2028373..>2029860) Sugiyamaella lignohabitans 30037489 AWJ20_5267 mRNA YAE1 NC_031673.1 2031684 2032169 R AWJ20_5267 complement(<2031684..>2032169) Sugiyamaella lignohabitans 30037490 AWJ20_5268 mRNA CUE1 NC_031673.1 2036462 2037115 R AWJ20_5268 complement(<2036462..>2037115) Sugiyamaella lignohabitans 30037491 AWJ20_5269 mRNA CBK1 NC_031673.1 2039190 2041430 R AWJ20_5269 complement(<2039190..>2041430) Sugiyamaella lignohabitans 30037492 AWJ20_5270 mRNA AWJ20_5270 NC_031673.1 2042864 2043757 R AWJ20_5270 complement(<2042864..>2043757) Sugiyamaella lignohabitans 30037494 AWJ20_5271 mRNA CDC8 NC_031673.1 2044647 2045303 R AWJ20_5271 complement(<2044647..>2045303) Sugiyamaella lignohabitans 30037495 AWJ20_5272 mRNA AWJ20_5272 NC_031673.1 2046153 2048057 R AWJ20_5272 complement(<2046153..>2048057) Sugiyamaella lignohabitans 30037496 AWJ20_5273 mRNA AWJ20_5273 NC_031673.1 2050535 2051956 R AWJ20_5273 complement(<2050535..>2051956) Sugiyamaella lignohabitans 30037497 AWJ20_5274 mRNA YJU3 NC_031673.1 2052804 2054495 R AWJ20_5274 complement(<2052804..>2054495) Sugiyamaella lignohabitans 30037498 AWJ20_5275 mRNA MEC1 NC_031673.1 2056992 2062388 D AWJ20_5275 <2056992..>2062388 Sugiyamaella lignohabitans 30037499 AWJ20_5276 mRNA MEC1 NC_031673.1 2062497 2062925 D AWJ20_5276 <2062497..>2062925 Sugiyamaella lignohabitans 30037500 AWJ20_5277 mRNA CLU1 NC_031673.1 2064227 2069743 R AWJ20_5277 complement(join(<2064227..2068029,2069725..>2069743)) Sugiyamaella lignohabitans 30037501 AWJ20_5278 mRNA MRPL24 NC_031673.1 2070974 2071840 R AWJ20_5278 complement(<2070974..>2071840) Sugiyamaella lignohabitans 30037502 AWJ20_5279 mRNA GYP5 NC_031673.1 2072539 2074779 R AWJ20_5279 complement(<2072539..>2074779) Sugiyamaella lignohabitans 30037503 AWJ20_5280 mRNA CPR6 NC_031673.1 2075490 2076617 R AWJ20_5280 complement(<2075490..>2076617) Sugiyamaella lignohabitans 30037505 AWJ20_5281 mRNA AWJ20_5281 NC_031673.1 2077731 2079584 D AWJ20_5281 <2077731..>2079584 Sugiyamaella lignohabitans 30037506 AWJ20_5282 mRNA AWJ20_5282 NC_031673.1 2080848 2082830 D AWJ20_5282 <2080848..>2082830 Sugiyamaella lignohabitans 30037507 AWJ20_5283 mRNA AWJ20_5283 NC_031673.1 2083100 2084152 R AWJ20_5283 complement(<2083100..>2084152) Sugiyamaella lignohabitans 30037508 AWJ20_5284 mRNA IWR1 NC_031673.1 2085318 2086381 D AWJ20_5284 join(<2085318..2085778,2085847..>2086381) Sugiyamaella lignohabitans 30037509 AWJ20_5285 mRNA RVS167 NC_031673.1 2087497 2089008 R AWJ20_5285 complement(<2087497..>2089008) Sugiyamaella lignohabitans 30037510 AWJ20_5286 mRNA AWJ20_5286 NC_031673.1 2089785 2090960 D AWJ20_5286 <2089785..>2090960 Sugiyamaella lignohabitans 30037511 AWJ20_5287 mRNA AWJ20_5287 NC_031673.1 2094967 2096952 R AWJ20_5287 complement(<2094967..>2096952) Sugiyamaella lignohabitans 30037512 AWJ20_5288 mRNA FMP45 NC_031673.1 2110442 2110795 D AWJ20_5288 <2110442..>2110795 Sugiyamaella lignohabitans 30037513 AWJ20_5289 mRNA WHI3 NC_031673.1 2114063 2117005 R AWJ20_5289 complement(<2114063..>2117005) Sugiyamaella lignohabitans 30037514 AWJ20_5290 mRNA ECM22 NC_031673.1 2121696 2122844 D AWJ20_5290 <2121696..>2122844 Sugiyamaella lignohabitans 30037516 AWJ20_5291 mRNA SLA1 NC_031673.1 2123097 2125202 R AWJ20_5291 complement(<2123097..>2125202) Sugiyamaella lignohabitans 30037517 AWJ20_5293 mRNA CCL1 NC_031673.1 2127766 2128878 D AWJ20_5293 <2127766..>2128878 Sugiyamaella lignohabitans 30037518 AWJ20_5294 mRNA AWJ20_5294 NC_031673.1 2129084 2130253 R AWJ20_5294 complement(<2129084..>2130253) Sugiyamaella lignohabitans 30037519 AWJ20_5295 mRNA MRP8 NC_031673.1 2131064 2131852 D AWJ20_5295 <2131064..>2131852 Sugiyamaella lignohabitans 30037520 AWJ20_5296 mRNA NOP9 NC_031673.1 2132056 2134425 R AWJ20_5296 complement(<2132056..>2134425) Sugiyamaella lignohabitans 30037521 AWJ20_5300 mRNA BIR1 NC_031673.1 2137595 2139754 D AWJ20_5300 <2137595..>2139754 Sugiyamaella lignohabitans 30037527 AWJ20_5301 mRNA PUF2 NC_031673.1 2138734 2144115 R AWJ20_5301 complement(join(<2138734..2139427,2140047..2143847,2144060..>2144115)) Sugiyamaella lignohabitans 30037528 AWJ20_5302 mRNA MEF1 NC_031673.1 2152910 2155207 D AWJ20_5302 <2152910..>2155207 Sugiyamaella lignohabitans 30037529 AWJ20_5303 mRNA APL3 NC_031673.1 2155740 2158601 D AWJ20_5303 <2155740..>2158601 Sugiyamaella lignohabitans 30037530 AWJ20_5304 mRNA AWJ20_5304 NC_031673.1 2158827 2159654 R AWJ20_5304 complement(<2158827..>2159654) Sugiyamaella lignohabitans 30037531 AWJ20_5305 mRNA IST2 NC_031673.1 2160300 2162498 D AWJ20_5305 <2160300..>2162498 Sugiyamaella lignohabitans 30037532 AWJ20_5306 mRNA POL12 NC_031673.1 2162666 2164612 R AWJ20_5306 complement(<2162666..>2164612) Sugiyamaella lignohabitans 30037533 AWJ20_5307 mRNA NTA1 NC_031673.1 2164970 2165992 R AWJ20_5307 complement(<2164970..>2165992) Sugiyamaella lignohabitans 30037534 AWJ20_5308 mRNA LHP1 NC_031673.1 2166339 2167325 R AWJ20_5308 complement(<2166339..>2167325) Sugiyamaella lignohabitans 30037535 AWJ20_5309 mRNA AWJ20_5309 NC_031673.1 2167731 2168354 R AWJ20_5309 complement(<2167731..>2168354) Sugiyamaella lignohabitans 30037536 AWJ20_5310 mRNA YPQ2 NC_031673.1 2169804 2171045 R AWJ20_5310 complement(<2169804..>2171045) Sugiyamaella lignohabitans 30037538 AWJ20_5311 mRNA AWJ20_5311 NC_031673.1 2174009 2175709 R AWJ20_5311 complement(<2174009..>2175709) Sugiyamaella lignohabitans 30037539 AWJ20_5312 mRNA RPS25B NC_031673.1 2183547 2183864 R AWJ20_5312 complement(<2183547..>2183864) Sugiyamaella lignohabitans 30037540 AWJ20_5313 mRNA NUP2 NC_031673.1 2185462 2187810 D AWJ20_5313 <2185462..>2187810 Sugiyamaella lignohabitans 30037541 AWJ20_5314 mRNA RSA4 NC_031673.1 2186667 2189676 R AWJ20_5314 complement(join(<2186667..2187370,2188152..>2189676)) Sugiyamaella lignohabitans 30037542 AWJ20_5315 mRNA LIA1 NC_031673.1 2190194 2191138 D AWJ20_5315 <2190194..>2191138 Sugiyamaella lignohabitans 30037543 AWJ20_5316 mRNA CCT5 NC_031673.1 2193127 2194512 D AWJ20_5316 <2193127..>2194512 Sugiyamaella lignohabitans 30037544 AWJ20_5317 mRNA AWJ20_5317 NC_031673.1 2194143 2194406 R AWJ20_5317 complement(<2194143..>2194406) Sugiyamaella lignohabitans 30037545 AWJ20_5319 mRNA CDC12 NC_031673.1 2196187 2197281 D AWJ20_5319 <2196187..>2197281 Sugiyamaella lignohabitans 30037547 AWJ20_5320 mRNA RPC34 NC_031673.1 2198015 2198815 R AWJ20_5320 complement(<2198015..>2198815) Sugiyamaella lignohabitans 30037549 AWJ20_5321 mRNA TRR1 NC_031673.1 2199618 2200577 R AWJ20_5321 complement(<2199618..>2200577) Sugiyamaella lignohabitans 30037550 AWJ20_5322 mRNA YTA12 NC_031673.1 2204489 2206669 D AWJ20_5322 <2204489..>2206669 Sugiyamaella lignohabitans 30037551 AWJ20_5323 mRNA AAT2 NC_031673.1 2207766 2209046 D AWJ20_5323 <2207766..>2209046 Sugiyamaella lignohabitans 30037552 AWJ20_5324 mRNA cox24 NC_031673.1 2209654 2210682 D AWJ20_5324 <2209654..>2210682 Sugiyamaella lignohabitans 30037553 AWJ20_5325 mRNA AWJ20_5325 NC_031673.1 2211921 2212844 D AWJ20_5325 <2211921..>2212844 Sugiyamaella lignohabitans 30037554 AWJ20_5326 mRNA MSB3 NC_031673.1 2213327 2214160 D AWJ20_5326 <2213327..>2214160 Sugiyamaella lignohabitans 30037555 AWJ20_5328 mRNA AWJ20_5328 NC_031673.1 2214681 2215325 R AWJ20_5328 complement(<2214681..>2215325) Sugiyamaella lignohabitans 30037557 AWJ20_5329 mRNA DLD2 NC_031673.1 2215700 2217331 D AWJ20_5329 <2215700..>2217331 Sugiyamaella lignohabitans 30037558 AWJ20_5330 mRNA NDC1 NC_031673.1 2218568 2220142 R AWJ20_5330 complement(<2218568..>2220142) Sugiyamaella lignohabitans 30037560 AWJ20_5331 mRNA TRS120 NC_031673.1 2222168 2226070 R AWJ20_5331 complement(<2222168..>2226070) Sugiyamaella lignohabitans 30037561 AWJ20_5332 mRNA RTC1 NC_031673.1 2226840 2230454 D AWJ20_5332 <2226840..>2230454 Sugiyamaella lignohabitans 30037562 AWJ20_5333 mRNA RFA2 NC_031673.1 2230831 2231583 D AWJ20_5333 <2230831..>2231583 Sugiyamaella lignohabitans 30037563 AWJ20_5334 mRNA IRC20 NC_031673.1 2232233 2236735 R AWJ20_5334 complement(<2232233..>2236735) Sugiyamaella lignohabitans 30037564 AWJ20_5335 mRNA ERG4 NC_031673.1 2237645 2239081 D AWJ20_5335 <2237645..>2239081 Sugiyamaella lignohabitans 30037565 AWJ20_5336 mRNA LCP5 NC_031673.1 2239292 2240302 R AWJ20_5336 complement(<2239292..>2240302) Sugiyamaella lignohabitans 30037566 AWJ20_5337 mRNA NSA2 NC_031673.1 2240765 2241550 D AWJ20_5337 <2240765..>2241550 Sugiyamaella lignohabitans 30037567 AWJ20_5338 mRNA STE6 NC_031673.1 2242278 2246336 R AWJ20_5338 complement(<2242278..>2246336) Sugiyamaella lignohabitans 30037568 AWJ20_5339 mRNA AWJ20_5339 NC_031673.1 2249030 2250688 R AWJ20_5339 complement(<2249030..>2250688) Sugiyamaella lignohabitans 30037569 AWJ20_5340 mRNA AWJ20_5340 NC_031673.1 2253950 2255044 D AWJ20_5340 <2253950..>2255044 Sugiyamaella lignohabitans 30037571 AWJ20_5341 mRNA HCM1 NC_031673.1 2258918 2262253 D AWJ20_5341 <2258918..>2262253 Sugiyamaella lignohabitans 30037572 AWJ20_5344 mRNA SNF3 NC_031673.1 2265491 2267089 R AWJ20_5344 complement(<2265491..>2267089) Sugiyamaella lignohabitans 30037575 AWJ20_5345 mRNA AWJ20_5345 NC_031673.1 2265585 2266759 D AWJ20_5345 join(<2265585..2265640,2265688..>2266759) Sugiyamaella lignohabitans 30037576 AWJ20_5346 mRNA SNF3 NC_031673.1 2272215 2273804 R AWJ20_5346 complement(<2272215..>2273804) Sugiyamaella lignohabitans 30037577 AWJ20_6 tRNA AWJ20_6 NC_031672.1 14738 14832 R tRNA-Lys complement(<14738..>14832) Sugiyamaella lignohabitans 30037649 AWJ20_19 tRNA AWJ20_19 NC_031672.1 51420 51490 R tRNA-Gly complement(<51420..>51490) Sugiyamaella lignohabitans 30033752 AWJ20_21 tRNA AWJ20_21 NC_031672.1 54211 54303 R tRNA-Phe complement(<54211..>54303) Sugiyamaella lignohabitans 30033973 AWJ20_31 tRNA AWJ20_31 NC_031672.1 81188 81269 D tRNA-Ser <81188..>81269 Sugiyamaella lignohabitans 30035084 AWJ20_38 tRNA AWJ20_38 NC_031672.1 96526 96597 R tRNA-Arg complement(<96526..>96597) Sugiyamaella lignohabitans 30035860 AWJ20_87 tRNA AWJ20_87 NC_031672.1 287209 287326 D tRNA-Pro <287209..>287326 Sugiyamaella lignohabitans 30037949 AWJ20_110 tRNA AWJ20_110 NC_031672.1 356023 356096 R tRNA-Asn complement(<356023..>356096) Sugiyamaella lignohabitans 30032865 AWJ20_112 tRNA AWJ20_112 NC_031672.1 360509 360611 D tRNA-Val <360509..>360611 Sugiyamaella lignohabitans 30032887 AWJ20_209 tRNA AWJ20_209 NC_031672.1 676215 676287 D tRNA-Trp <676215..>676287 Sugiyamaella lignohabitans 30033962 AWJ20_230 tRNA AWJ20_230 NC_031672.1 741135 741216 D tRNA-Ser <741135..>741216 Sugiyamaella lignohabitans 30034196 AWJ20_232 tRNA AWJ20_232 NC_031672.1 743807 743878 D tRNA-Met <743807..>743878 Sugiyamaella lignohabitans 30034218 AWJ20_233 tRNA AWJ20_233 NC_031672.1 743954 744025 D tRNA-Met <743954..>744025 Sugiyamaella lignohabitans 30034229 AWJ20_247 tRNA AWJ20_247 NC_031672.1 779566 779639 D tRNA-Val <779566..>779639 Sugiyamaella lignohabitans 30034384 AWJ20_254 tRNA AWJ20_254 NC_031672.1 788069 788150 R tRNA-Ser complement(<788069..>788150) Sugiyamaella lignohabitans 30034462 AWJ20_286 tRNA AWJ20_286 NC_031672.1 900713 900812 D tRNA-Lys <900713..>900812 Sugiyamaella lignohabitans 30034817 AWJ20_287 tRNA AWJ20_287 NC_031672.1 901232 901323 R tRNA-Phe complement(<901232..>901323) Sugiyamaella lignohabitans 30034828 AWJ20_333 tRNA AWJ20_333 NC_031672.1 1051165 1051236 R tRNA-Arg complement(<1051165..>1051236) Sugiyamaella lignohabitans 30035340 AWJ20_337 tRNA AWJ20_337 NC_031672.1 1057475 1057545 R tRNA-Gly complement(<1057475..>1057545) Sugiyamaella lignohabitans 30035384 AWJ20_352 tRNA AWJ20_352 NC_031672.1 1109925 1110024 D tRNA-Leu <1109925..>1110024 Sugiyamaella lignohabitans 30035551 AWJ20_422 tRNA AWJ20_422 NC_031672.1 1361532 1361621 D tRNA-Phe <1361532..>1361621 Sugiyamaella lignohabitans 30036328 AWJ20_434 tRNA AWJ20_434 NC_031672.1 1402508 1402579 R tRNA-Asp complement(<1402508..>1402579) Sugiyamaella lignohabitans 30036461 AWJ20_435 tRNA AWJ20_435 NC_031672.1 1402659 1402730 R tRNA-Asp complement(<1402659..>1402730) Sugiyamaella lignohabitans 30036472 AWJ20_436 tRNA AWJ20_436 NC_031672.1 1402739 1402809 R tRNA-Gly complement(<1402739..>1402809) Sugiyamaella lignohabitans 30036483 AWJ20_437 tRNA AWJ20_437 NC_031672.1 1403803 1403874 R tRNA-Asp complement(<1403803..>1403874) Sugiyamaella lignohabitans 30036494 AWJ20_438 tRNA AWJ20_438 NC_031672.1 1403883 1403953 R tRNA-Gly complement(<1403883..>1403953) Sugiyamaella lignohabitans 30036505 AWJ20_454 tRNA AWJ20_454 NC_031672.1 1458679 1458749 D tRNA-Gly <1458679..>1458749 Sugiyamaella lignohabitans 30036683 AWJ20_456 tRNA AWJ20_456 NC_031672.1 1460394 1460464 D tRNA-Gly <1460394..>1460464 Sugiyamaella lignohabitans 30036705 AWJ20_457 tRNA AWJ20_457 NC_031672.1 1462034 1462104 D tRNA-Gly <1462034..>1462104 Sugiyamaella lignohabitans 30036716 AWJ20_458 tRNA AWJ20_458 NC_031672.1 1463172 1463242 D tRNA-Gly <1463172..>1463242 Sugiyamaella lignohabitans 30036727 AWJ20_469 tRNA AWJ20_469 NC_031672.1 1486141 1486214 R tRNA-Ala complement(<1486141..>1486214) Sugiyamaella lignohabitans 30036848 AWJ20_565 tRNA AWJ20_565 NC_031672.1 1817116 1817200 D tRNA-Gln <1817116..>1817200 Sugiyamaella lignohabitans 30037611 AWJ20_613 tRNA AWJ20_613 NC_031672.1 1977184 1977255 D tRNA-Met <1977184..>1977255 Sugiyamaella lignohabitans 30037665 AWJ20_638 tRNA AWJ20_638 NC_031672.1 2045315 2045388 R tRNA-Asn complement(<2045315..>2045388) Sugiyamaella lignohabitans 30037692 AWJ20_646 tRNA AWJ20_646 NC_031672.1 2064392 2064506 R tRNA-Lys complement(<2064392..>2064506) Sugiyamaella lignohabitans 30037701 AWJ20_696 tRNA AWJ20_696 NC_031672.1 2225494 2225591 R tRNA-Ser complement(<2225494..>2225591) Sugiyamaella lignohabitans 30037756 AWJ20_697 tRNA AWJ20_697 NC_031672.1 2225669 2225766 R tRNA-Ser complement(<2225669..>2225766) Sugiyamaella lignohabitans 30037757 AWJ20_805 tRNA AWJ20_805 NC_031672.1 2532014 2532084 D tRNA-Gly <2532014..>2532084 Sugiyamaella lignohabitans 30037878 AWJ20_850 tRNA AWJ20_850 NC_031672.1 2685465 2685536 D tRNA-Glu <2685465..>2685536 Sugiyamaella lignohabitans 30037928 AWJ20_867 tRNA AWJ20_867 NC_031672.1 2735701 2735774 D tRNA-Val <2735701..>2735774 Sugiyamaella lignohabitans 30037946 AWJ20_884 tRNA AWJ20_884 NC_031672.1 2799214 2799342 D tRNA-Leu <2799214..>2799342 Sugiyamaella lignohabitans 30037965 AWJ20_905 tRNA AWJ20_905 NC_031672.1 2884714 2884786 R tRNA-Arg complement(<2884714..>2884786) Sugiyamaella lignohabitans 30037989 AWJ20_907 tRNA AWJ20_907 NC_031672.1 2890039 2890112 D tRNA-Ala <2890039..>2890112 Sugiyamaella lignohabitans 30037991 AWJ20_927 tRNA AWJ20_927 NC_031672.1 2951915 2951986 R tRNA-Glu complement(<2951915..>2951986) Sugiyamaella lignohabitans 30038013 AWJ20_932 tRNA AWJ20_932 NC_031672.1 2972176 2972285 D tRNA-Pro <2972176..>2972285 Sugiyamaella lignohabitans 30038019 AWJ20_946 tRNA AWJ20_946 NC_031672.1 3004853 3004926 R tRNA-Ile complement(<3004853..>3004926) Sugiyamaella lignohabitans 30038034 AWJ20_950 tRNA AWJ20_950 NC_031672.1 3014445 3014518 D tRNA-Ile <3014445..>3014518 Sugiyamaella lignohabitans 30038039 AWJ20_951 tRNA AWJ20_951 NC_031672.1 3014797 3014895 R tRNA-Met complement(<3014797..>3014895) Sugiyamaella lignohabitans 30038040 AWJ20_967 tRNA AWJ20_967 NC_031672.1 3060635 3060708 D tRNA-Val <3060635..>3060708 Sugiyamaella lignohabitans 30038057 AWJ20_1026 tRNA AWJ20_1026 NC_031672.1 3275061 3275132 R tRNA-Arg complement(<3275061..>3275132) Sugiyamaella lignohabitans 30032783 AWJ20_1028 tRNA AWJ20_1028 NC_031672.1 3279542 3279623 D tRNA-Gln <3279542..>3279623 Sugiyamaella lignohabitans 30032785 AWJ20_1061 tRNA AWJ20_1061 NC_031672.1 3381305 3381376 D tRNA-Gln <3381305..>3381376 Sugiyamaella lignohabitans 30032822 AWJ20_1062 tRNA AWJ20_1062 NC_031672.1 3381708 3381779 R tRNA-Gln complement(<3381708..>3381779) Sugiyamaella lignohabitans 30032823 AWJ20_1112 tRNA AWJ20_1112 NC_031672.1 3526753 3526846 R tRNA-Lys complement(<3526753..>3526846) Sugiyamaella lignohabitans 30032879 AWJ20_1114 tRNA AWJ20_1114 NC_031672.1 3530263 3530356 R tRNA-Lys complement(<3530263..>3530356) Sugiyamaella lignohabitans 30032881 AWJ20_1117 tRNA AWJ20_1117 NC_031672.1 3539402 3539504 R tRNA-Arg complement(<3539402..>3539504) Sugiyamaella lignohabitans 30032884 AWJ20_1123 tRNA AWJ20_1123 NC_031672.1 3551971 3552042 R tRNA-Glu complement(<3551971..>3552042) Sugiyamaella lignohabitans 30032891 AWJ20_1133 tRNA AWJ20_1133 NC_031672.1 3586309 3586380 R tRNA-His complement(<3586309..>3586380) Sugiyamaella lignohabitans 30032902 AWJ20_1138 tRNA AWJ20_1138 NC_031672.1 3602788 3602860 D tRNA-Arg <3602788..>3602860 Sugiyamaella lignohabitans 30032907 AWJ20_1344 tRNA AWJ20_1344 NC_031672.1 4177800 4177884 R tRNA-Cys complement(<4177800..>4177884) Sugiyamaella lignohabitans 30033136 AWJ20_1378 tRNA AWJ20_1378 NC_031672.1 4272450 4272521 R tRNA-Asp complement(<4272450..>4272521) Sugiyamaella lignohabitans 30033173 AWJ20_1390 tRNA AWJ20_1390 NC_031672.1 4298693 4298764 D tRNA-Asp <4298693..>4298764 Sugiyamaella lignohabitans 30033187 AWJ20_1428 tRNA AWJ20_1428 NC_031672.1 4420234 4420305 R tRNA-Asp complement(<4420234..>4420305) Sugiyamaella lignohabitans 30033229 AWJ20_1539 tRNA AWJ20_1539 NC_031672.1 4799018 4799089 R tRNA-Glu complement(<4799018..>4799089) Sugiyamaella lignohabitans 30033352 AWJ20_1540 tRNA AWJ20_1540 NC_031672.1 4799450 4799550 R tRNA-Pro complement(<4799450..>4799550) Sugiyamaella lignohabitans 30033354 AWJ20_1583 tRNA AWJ20_1583 NC_031672.1 4889358 4889431 D tRNA-Ala <4889358..>4889431 Sugiyamaella lignohabitans 30033401 AWJ20_1584 tRNA AWJ20_1584 NC_031672.1 4889866 4889939 R tRNA-Ile complement(<4889866..>4889939) Sugiyamaella lignohabitans 30033402 AWJ20_1644 tRNA AWJ20_1644 NC_031672.1 5034054 5034127 R tRNA-Ile complement(<5034054..>5034127) Sugiyamaella lignohabitans 30033469 AWJ20_1656 tRNA AWJ20_1656 NC_031672.1 5064041 5064153 R tRNA-Ser complement(<5064041..>5064153) Sugiyamaella lignohabitans 30033482 AWJ20_1669 tRNA AWJ20_1669 NC_031672.1 5100476 5100562 D tRNA-Tyr <5100476..>5100562 Sugiyamaella lignohabitans 30033496 AWJ20_1670 tRNA AWJ20_1670 NC_031672.1 5100573 5100659 D tRNA-Tyr <5100573..>5100659 Sugiyamaella lignohabitans 30033498 AWJ20_1699 tRNA AWJ20_1699 NC_031672.1 5184128 5184224 D tRNA-Ser <5184128..>5184224 Sugiyamaella lignohabitans 30033529 AWJ20_1754 tRNA AWJ20_1754 NC_031672.1 5337053 5337149 D tRNA-Lys <5337053..>5337149 Sugiyamaella lignohabitans 30033591 AWJ20_1755 tRNA AWJ20_1755 NC_031672.1 5337219 5337315 D tRNA-Lys <5337219..>5337315 Sugiyamaella lignohabitans 30033592 AWJ20_1788 tRNA AWJ20_1788 NC_031672.1 5429513 5429585 D tRNA-Trp <5429513..>5429585 Sugiyamaella lignohabitans 30033628 AWJ20_1808 tRNA AWJ20_1808 NC_031672.1 5470607 5470680 D tRNA-Asn <5470607..>5470680 Sugiyamaella lignohabitans 30033651 AWJ20_1820 tRNA AWJ20_1820 NC_031672.1 5511135 5511206 D tRNA-Met <5511135..>5511206 Sugiyamaella lignohabitans 30033665 AWJ20_1875 tRNA AWJ20_1875 NC_031672.1 5652619 5652706 D tRNA-Tyr <5652619..>5652706 Sugiyamaella lignohabitans 30033725 AWJ20_1909 tRNA AWJ20_1909 NC_031672.1 5762418 5762509 D tRNA-Thr <5762418..>5762509 Sugiyamaella lignohabitans 30033762 AWJ20_2028 tRNA AWJ20_2028 NC_031674.1 178693 178766 R tRNA-Ile complement(<178693..>178766) Sugiyamaella lignohabitans 30033894 AWJ20_2054 tRNA AWJ20_2054 NC_031674.1 265090 265161 R tRNA-Thr complement(<265090..>265161) Sugiyamaella lignohabitans 30033923 AWJ20_2063 tRNA AWJ20_2063 NC_031674.1 285387 285484 R tRNA-Leu complement(<285387..>285484) Sugiyamaella lignohabitans 30033933 AWJ20_2077 tRNA AWJ20_2077 NC_031674.1 317638 317724 D tRNA-Tyr <317638..>317724 Sugiyamaella lignohabitans 30033948 AWJ20_2096 tRNA AWJ20_2096 NC_031674.1 374204 374277 R tRNA-Ile complement(<374204..>374277) Sugiyamaella lignohabitans 30033969 AWJ20_2100 tRNA AWJ20_2100 NC_031674.1 394926 395036 R tRNA-Leu complement(<394926..>395036) Sugiyamaella lignohabitans 30033975 AWJ20_2129 tRNA AWJ20_2129 NC_031674.1 477351 477443 R tRNA-Pro complement(<477351..>477443) Sugiyamaella lignohabitans 30034006 AWJ20_2130 tRNA AWJ20_2130 NC_031674.1 477651 477722 D tRNA-Glu <477651..>477722 Sugiyamaella lignohabitans 30034008 AWJ20_2152 tRNA AWJ20_2152 NC_031674.1 534748 534829 D tRNA-Gln <534748..>534829 Sugiyamaella lignohabitans 30034032 AWJ20_2167 tRNA AWJ20_2167 NC_031674.1 568798 568871 D tRNA-Ala <568798..>568871 Sugiyamaella lignohabitans 30034048 AWJ20_2168 tRNA AWJ20_2168 NC_031674.1 570067 570158 R tRNA-Arg complement(<570067..>570158) Sugiyamaella lignohabitans 30034049 AWJ20_2189 tRNA AWJ20_2189 NC_031674.1 623783 623877 R tRNA-Phe complement(<623783..>623877) Sugiyamaella lignohabitans 30034072 AWJ20_2193 tRNA AWJ20_2193 NC_031674.1 632569 632672 D tRNA-Ser <632569..>632672 Sugiyamaella lignohabitans 30034077 AWJ20_2195 tRNA AWJ20_2195 NC_031674.1 637869 637979 R tRNA-Leu complement(<637869..>637979) Sugiyamaella lignohabitans 30034079 AWJ20_2198 tRNA AWJ20_2198 NC_031674.1 646666 646739 D tRNA-Ala <646666..>646739 Sugiyamaella lignohabitans 30034082 AWJ20_2201 tRNA AWJ20_2201 NC_031674.1 651923 652004 R tRNA-Thr complement(<651923..>652004) Sugiyamaella lignohabitans 30034087 AWJ20_2313 tRNA AWJ20_2313 NC_031674.1 964835 964906 R tRNA-His complement(<964835..>964906) Sugiyamaella lignohabitans 30034211 AWJ20_2314 tRNA AWJ20_2314 NC_031674.1 965405 965476 R tRNA-His complement(<965405..>965476) Sugiyamaella lignohabitans 30034212 AWJ20_2404 tRNA AWJ20_2404 NC_031674.1 1242029 1242102 R tRNA-Val complement(<1242029..>1242102) Sugiyamaella lignohabitans 30034312 AWJ20_2405 tRNA AWJ20_2405 NC_031674.1 1243199 1243272 R tRNA-Val complement(<1243199..>1243272) Sugiyamaella lignohabitans 30034313 AWJ20_2406 tRNA AWJ20_2406 NC_031674.1 1243789 1243880 R tRNA-Pro complement(<1243789..>1243880) Sugiyamaella lignohabitans 30034314 AWJ20_2407 tRNA AWJ20_2407 NC_031674.1 1246865 1246938 D tRNA-Val <1246865..>1246938 Sugiyamaella lignohabitans 30034315 AWJ20_2421 tRNA AWJ20_2421 NC_031674.1 1286791 1286872 R tRNA-Leu complement(<1286791..>1286872) Sugiyamaella lignohabitans 30034331 AWJ20_2440 tRNA AWJ20_2440 NC_031674.1 1352599 1352685 R tRNA-Cys complement(<1352599..>1352685) Sugiyamaella lignohabitans 30034352 AWJ20_2508 tRNA AWJ20_2508 NC_031674.1 1570071 1570142 D tRNA-Thr <1570071..>1570142 Sugiyamaella lignohabitans 30034427 AWJ20_2519 tRNA AWJ20_2519 NC_031674.1 1602276 1602357 D tRNA-Leu <1602276..>1602357 Sugiyamaella lignohabitans 30034439 AWJ20_2537 tRNA AWJ20_2537 NC_031674.1 1672570 1672669 R tRNA-Lys complement(<1672570..>1672669) Sugiyamaella lignohabitans 30034459 AWJ20_2538 tRNA AWJ20_2538 NC_031674.1 1673217 1673287 R tRNA-Gly complement(<1673217..>1673287) Sugiyamaella lignohabitans 30034460 AWJ20_2571 tRNA AWJ20_2571 NC_031674.1 1782370 1782440 D tRNA-Gly <1782370..>1782440 Sugiyamaella lignohabitans 30034497 AWJ20_2573 tRNA AWJ20_2573 NC_031674.1 1788691 1788778 D tRNA-Cys <1788691..>1788778 Sugiyamaella lignohabitans 30034499 AWJ20_2630 tRNA AWJ20_2630 NC_031674.1 2001874 2001980 D tRNA-Pro <2001874..>2001980 Sugiyamaella lignohabitans 30034563 AWJ20_2739 tRNA AWJ20_2739 NC_031674.1 2341634 2341723 D tRNA-Phe <2341634..>2341723 Sugiyamaella lignohabitans 30034683 AWJ20_2754 tRNA AWJ20_2754 NC_031674.1 2377533 2377631 R tRNA-Lys complement(<2377533..>2377631) Sugiyamaella lignohabitans 30034700 AWJ20_2777 tRNA AWJ20_2777 NC_031674.1 2433917 2434041 D tRNA-Leu <2433917..>2434041 Sugiyamaella lignohabitans 30034725 AWJ20_2778 tRNA AWJ20_2778 NC_031674.1 2435019 2435092 D tRNA-Val <2435019..>2435092 Sugiyamaella lignohabitans 30034726 AWJ20_2839 tRNA AWJ20_2839 NC_031674.1 2599390 2599461 R tRNA-Glu complement(<2599390..>2599461) Sugiyamaella lignohabitans 30034794 AWJ20_2854 tRNA AWJ20_2854 NC_031674.1 2629808 2629881 D tRNA-Ala <2629808..>2629881 Sugiyamaella lignohabitans 30034811 AWJ20_2915 tRNA AWJ20_2915 NC_031674.1 2783914 2783987 R tRNA-Ala complement(<2783914..>2783987) Sugiyamaella lignohabitans 30034879 AWJ20_3063 tRNA AWJ20_3063 NC_031674.1 3189892 3189996 R tRNA-Gly complement(<3189892..>3189996) Sugiyamaella lignohabitans 30035044 AWJ20_3218 tRNA AWJ20_3218 NC_031674.1 3647376 3647449 R tRNA-Ala complement(<3647376..>3647449) Sugiyamaella lignohabitans 30035216 AWJ20_3220 tRNA AWJ20_3220 NC_031674.1 3650746 3650840 R tRNA-Lys complement(<3650746..>3650840) Sugiyamaella lignohabitans 30035219 AWJ20_3221 tRNA AWJ20_3221 NC_031674.1 3653632 3653713 D tRNA-Leu <3653632..>3653713 Sugiyamaella lignohabitans 30035220 AWJ20_3225 tRNA AWJ20_3225 NC_031674.1 3659364 3659435 D tRNA-Asp <3659364..>3659435 Sugiyamaella lignohabitans 30035224 AWJ20_3226 tRNA AWJ20_3226 NC_031674.1 3659628 3659699 D tRNA-Asp <3659628..>3659699 Sugiyamaella lignohabitans 30035225 AWJ20_3237 tRNA AWJ20_3237 NC_031674.1 3697151 3697232 D tRNA-Leu <3697151..>3697232 Sugiyamaella lignohabitans 30035237 AWJ20_3239 tRNA AWJ20_3239 NC_031674.1 3699954 3700035 D tRNA-Leu <3699954..>3700035 Sugiyamaella lignohabitans 30035239 AWJ20_3242 tRNA AWJ20_3242 NC_031674.1 3705212 3705285 R tRNA-Ile complement(<3705212..>3705285) Sugiyamaella lignohabitans 30035243 AWJ20_3243 tRNA AWJ20_3243 NC_031674.1 3708066 3708139 D tRNA-Ala <3708066..>3708139 Sugiyamaella lignohabitans 30035244 AWJ20_3289 tRNA AWJ20_3289 NC_031674.1 3836112 3836197 R tRNA-Thr complement(<3836112..>3836197) Sugiyamaella lignohabitans 30035294 AWJ20_3321 tRNA AWJ20_3321 NC_031674.1 3917193 3917266 R tRNA-Ile complement(<3917193..>3917266) Sugiyamaella lignohabitans 30035331 AWJ20_3357 tRNA AWJ20_3357 NC_031674.1 4001772 4001870 R tRNA-Ala complement(<4001772..>4001870) Sugiyamaella lignohabitans 30035370 AWJ20_3375 tRNA AWJ20_3375 NC_031674.1 4039738 4039819 R tRNA-Leu complement(<4039738..>4039819) Sugiyamaella lignohabitans 30035390 AWJ20_3384 tRNA AWJ20_3384 NC_031674.1 4070639 4070712 D tRNA-Ala <4070639..>4070712 Sugiyamaella lignohabitans 30035400 AWJ20_3385 tRNA AWJ20_3385 NC_031674.1 4070931 4071004 R tRNA-Asn complement(<4070931..>4071004) Sugiyamaella lignohabitans 30035401 AWJ20_3386 tRNA AWJ20_3386 NC_031674.1 4072575 4072646 D tRNA-Glu <4072575..>4072646 Sugiyamaella lignohabitans 30035402 AWJ20_3588 tRNA AWJ20_3588 NC_031674.1 4616838 4616937 R tRNA-Ser complement(<4616838..>4616937) Sugiyamaella lignohabitans 30035626 AWJ20_3589 tRNA AWJ20_3589 NC_031674.1 4617130 4617221 D tRNA-Arg <4617130..>4617221 Sugiyamaella lignohabitans 30035627 AWJ20_3590 tRNA AWJ20_3590 NC_031674.1 4617702 4617794 R tRNA-Arg complement(<4617702..>4617794) Sugiyamaella lignohabitans 30035629 AWJ20_3598 tRNA AWJ20_3598 NC_031674.1 4634435 4634547 R tRNA-Pro complement(<4634435..>4634547) Sugiyamaella lignohabitans 30035637 AWJ20_3602 tRNA AWJ20_3602 NC_031674.1 4643780 4643879 D tRNA-Ser <4643780..>4643879 Sugiyamaella lignohabitans 30035643 AWJ20_3639 tRNA AWJ20_3639 NC_031674.1 4755479 4755577 R tRNA-Arg complement(<4755479..>4755577) Sugiyamaella lignohabitans 30035683 AWJ20_3690 tRNA AWJ20_3690 NC_031674.1 4889482 4889554 D tRNA-Trp <4889482..>4889554 Sugiyamaella lignohabitans 30035739 AWJ20_3804 tRNA AWJ20_3804 NC_031671.1 320293 320403 R tRNA-Leu complement(<320293..>320403) Sugiyamaella lignohabitans 30035866 AWJ20_3810 tRNA AWJ20_3810 NC_031671.1 334250 334331 R tRNA-Ser complement(<334250..>334331) Sugiyamaella lignohabitans 30035873 AWJ20_3888 tRNA AWJ20_3888 NC_031671.1 570186 570258 D tRNA-Arg <570186..>570258 Sugiyamaella lignohabitans 30035958 AWJ20_3908 tRNA AWJ20_3908 NC_031671.1 661076 661161 D tRNA-Pro <661076..>661161 Sugiyamaella lignohabitans 30035981 AWJ20_3926 tRNA AWJ20_3926 NC_031671.1 718557 718674 D tRNA-Pro <718557..>718674 Sugiyamaella lignohabitans 30036001 AWJ20_3941 tRNA AWJ20_3941 NC_031671.1 754109 754190 R tRNA-Ser complement(<754109..>754190) Sugiyamaella lignohabitans 30036018 AWJ20_3955 tRNA AWJ20_3955 NC_031671.1 792503 792573 R tRNA-Gly complement(<792503..>792573) Sugiyamaella lignohabitans 30036033 AWJ20_3969 tRNA AWJ20_3969 NC_031671.1 828540 828628 D tRNA-Phe <828540..>828628 Sugiyamaella lignohabitans 30036048 AWJ20_4036 tRNA AWJ20_4036 NC_031671.1 1081739 1081837 R tRNA-Ser complement(<1081739..>1081837) Sugiyamaella lignohabitans 30036124 AWJ20_4081 tRNA AWJ20_4081 NC_031671.1 1231700 1231785 D tRNA-Tyr <1231700..>1231785 Sugiyamaella lignohabitans 30036174 AWJ20_4134 tRNA AWJ20_4134 NC_031671.1 1394177 1394250 D tRNA-Asn <1394177..>1394250 Sugiyamaella lignohabitans 30036233 AWJ20_4147 tRNA AWJ20_4147 NC_031671.1 1433145 1433226 D tRNA-Ser <1433145..>1433226 Sugiyamaella lignohabitans 30036247 AWJ20_4179 tRNA AWJ20_4179 NC_031671.1 1520592 1520663 D tRNA-Glu <1520592..>1520663 Sugiyamaella lignohabitans 30036282 AWJ20_4180 tRNA AWJ20_4180 NC_031671.1 1521162 1521233 D tRNA-Glu <1521162..>1521233 Sugiyamaella lignohabitans 30036284 AWJ20_4181 tRNA AWJ20_4181 NC_031671.1 1521667 1521785 R tRNA-Ile complement(<1521667..>1521785) Sugiyamaella lignohabitans 30036285 AWJ20_4215 tRNA AWJ20_4215 NC_031671.1 1625593 1625666 D tRNA-Asn <1625593..>1625666 Sugiyamaella lignohabitans 30036323 AWJ20_4256 tRNA AWJ20_4256 NC_031671.1 1767481 1767562 D tRNA-Ser <1767481..>1767562 Sugiyamaella lignohabitans 30036368 AWJ20_4268 tRNA AWJ20_4268 NC_031671.1 1798721 1798794 R tRNA-Ala complement(<1798721..>1798794) Sugiyamaella lignohabitans 30036381 AWJ20_4304 tRNA AWJ20_4304 NC_031671.1 1925933 1926004 D tRNA-His <1925933..>1926004 Sugiyamaella lignohabitans 30036422 AWJ20_4305 tRNA AWJ20_4305 NC_031671.1 1926757 1926830 D tRNA-Ala <1926757..>1926830 Sugiyamaella lignohabitans 30036423 AWJ20_4306 tRNA AWJ20_4306 NC_031671.1 1927156 1927227 D tRNA-His <1927156..>1927227 Sugiyamaella lignohabitans 30036424 AWJ20_4323 tRNA AWJ20_4323 NC_031671.1 1983573 1983654 R tRNA-Leu complement(<1983573..>1983654) Sugiyamaella lignohabitans 30036443 AWJ20_4325 tRNA AWJ20_4325 NC_031671.1 1986919 1987000 R tRNA-Ser complement(<1986919..>1987000) Sugiyamaella lignohabitans 30036445 AWJ20_4357 tRNA AWJ20_4357 NC_031671.1 2080022 2080127 R tRNA-Pro complement(<2080022..>2080127) Sugiyamaella lignohabitans 30036480 AWJ20_4363 tRNA AWJ20_4363 NC_031671.1 2096406 2096477 D tRNA-Thr <2096406..>2096477 Sugiyamaella lignohabitans 30036487 AWJ20_4370 tRNA AWJ20_4370 NC_031671.1 2112283 2112369 D tRNA-Tyr <2112283..>2112369 Sugiyamaella lignohabitans 30036495 AWJ20_4417 tRNA AWJ20_4417 NC_031671.1 2273143 2273215 R tRNA-Arg complement(<2273143..>2273215) Sugiyamaella lignohabitans 30036547 AWJ20_4550 tRNA AWJ20_4550 NC_031671.1 2620938 2621011 D tRNA-Ala <2620938..>2621011 Sugiyamaella lignohabitans 30036695 AWJ20_4604 tRNA AWJ20_4604 NC_031673.1 2427 2521 D tRNA-Lys <2427..>2521 Sugiyamaella lignohabitans 30036755 AWJ20_4607 tRNA AWJ20_4607 NC_031673.1 16060 16131 D tRNA-Gln <16060..>16131 Sugiyamaella lignohabitans 30036758 AWJ20_4702 tRNA AWJ20_4702 NC_031673.1 304726 304797 D tRNA-Gln <304726..>304797 Sugiyamaella lignohabitans 30036863 AWJ20_4709 tRNA AWJ20_4709 NC_031673.1 318793 318864 D tRNA-Asp <318793..>318864 Sugiyamaella lignohabitans 30036870 AWJ20_4724 tRNA AWJ20_4724 NC_031673.1 363829 363940 D tRNA-Leu <363829..>363940 Sugiyamaella lignohabitans 30036887 AWJ20_4798 tRNA AWJ20_4798 NC_031673.1 580480 580551 D tRNA-Thr <580480..>580551 Sugiyamaella lignohabitans 30036968 AWJ20_4800 tRNA AWJ20_4800 NC_031673.1 595111 595182 R tRNA-Thr complement(<595111..>595182) Sugiyamaella lignohabitans 30036972 AWJ20_4801 tRNA AWJ20_4801 NC_031673.1 595202 595273 R tRNA-Thr complement(<595202..>595273) Sugiyamaella lignohabitans 30036973 AWJ20_4888 tRNA AWJ20_4888 NC_031673.1 850029 850099 R tRNA-Gly complement(<850029..>850099) Sugiyamaella lignohabitans 30037068 AWJ20_4901 tRNA AWJ20_4901 NC_031673.1 882712 882801 R tRNA-Phe complement(<882712..>882801) Sugiyamaella lignohabitans 30037084 AWJ20_4945 tRNA AWJ20_4945 NC_031673.1 1025830 1025916 D tRNA-Thr <1025830..>1025916 Sugiyamaella lignohabitans 30037132 AWJ20_4961 tRNA AWJ20_4961 NC_031673.1 1086761 1086831 D tRNA-Gly <1086761..>1086831 Sugiyamaella lignohabitans 30037150 AWJ20_4974 tRNA AWJ20_4974 NC_031673.1 1135047 1135119 D tRNA-Arg <1135047..>1135119 Sugiyamaella lignohabitans 30037164 AWJ20_5046 tRNA AWJ20_5046 NC_031673.1 1335618 1335689 D tRNA-Glu <1335618..>1335689 Sugiyamaella lignohabitans 30037245 AWJ20_5060 tRNA AWJ20_5060 NC_031673.1 1362349 1362422 D tRNA-Val <1362349..>1362422 Sugiyamaella lignohabitans 30037261 AWJ20_5108 tRNA AWJ20_5108 NC_031673.1 1551727 1551825 R tRNA-Met complement(<1551727..>1551825) Sugiyamaella lignohabitans 30037314 AWJ20_5150 tRNA AWJ20_5150 NC_031673.1 1692052 1692179 R tRNA-Leu complement(<1692052..>1692179) Sugiyamaella lignohabitans 30037361 AWJ20_5151 tRNA AWJ20_5151 NC_031673.1 1692406 1692476 D tRNA-Gly <1692406..>1692476 Sugiyamaella lignohabitans 30037362 AWJ20_5217 tRNA AWJ20_5217 NC_031673.1 1911540 1911611 D tRNA-Thr <1911540..>1911611 Sugiyamaella lignohabitans 30037435 AWJ20_5230 tRNA AWJ20_5230 NC_031673.1 1943417 1943490 R tRNA-Val complement(<1943417..>1943490) Sugiyamaella lignohabitans 30037450 AWJ20_5231 tRNA AWJ20_5231 NC_031673.1 1944721 1944819 D tRNA-Met <1944721..>1944819 Sugiyamaella lignohabitans 30037451 AWJ20_5232 tRNA AWJ20_5232 NC_031673.1 1944825 1944896 D tRNA-Glu <1944825..>1944896 Sugiyamaella lignohabitans 30037452 AWJ20_5297 tRNA AWJ20_5297 NC_031673.1 2134677 2134748 D tRNA-Glu <2134677..>2134748 Sugiyamaella lignohabitans 30037522 AWJ20_5298 tRNA AWJ20_5298 NC_031673.1 2136144 2136215 R tRNA-Glu complement(<2136144..>2136215) Sugiyamaella lignohabitans 30037523 AWJ20_5299 tRNA AWJ20_5299 NC_031673.1 2137232 2137339 D tRNA-Val <2137232..>2137339 Sugiyamaella lignohabitans 30037524 AWJ20_5318 tRNA AWJ20_5318 NC_031673.1 2195053 2195125 D tRNA-Arg <2195053..>2195125 Sugiyamaella lignohabitans 30037546 AWJ20_5327 tRNA AWJ20_5327 NC_031673.1 2214481 2214554 D tRNA-Ile <2214481..>2214554 Sugiyamaella lignohabitans 30037556 AWJ20_5342 tRNA AWJ20_5342 NC_031673.1 2264839 2264936 R tRNA-Lys complement(<2264839..>2264936) Sugiyamaella lignohabitans 30037573 AWJ20_5343 tRNA AWJ20_5343 NC_031673.1 2265156 2265252 D tRNA-Lys <2265156..>2265252 Sugiyamaella lignohabitans 30037574 AWJ20_736 rRNA AWJ20_736 NC_031672.1 2333384 2333500 R 8S ribosomal RNA complement(2333384..2333500) Sugiyamaella lignohabitans 30037801 AWJ20_3693 rRNA AWJ20_3693 NC_031674.1 4899216 4902718 R 28S ribosomal RNA complement(4899216..4902718) Sugiyamaella lignohabitans 30035742 AWJ20_3694 rRNA AWJ20_3694 NC_031674.1 4902859 4904658 R 18S ribosomal RNA complement(4902859..4904658) Sugiyamaella lignohabitans 30035743 AWJ20_3695 rRNA AWJ20_3695 NC_031674.1 4907834 4911336 R 28S ribosomal RNA complement(4907834..4911336) Sugiyamaella lignohabitans 30035744 AWJ20_3696 rRNA AWJ20_3696 NC_031674.1 4911477 4913275 R 18S ribosomal RNA complement(4911477..4913275) Sugiyamaella lignohabitans 30035745 AWJ20_3697 rRNA AWJ20_3697 NC_031674.1 4916452 4919953 R 28S ribosomal RNA complement(4916452..4919953) Sugiyamaella lignohabitans 30035746 AWJ20_3698 rRNA AWJ20_3698 NC_031674.1 4920094 4921892 R 18S ribosomal RNA complement(4920094..4921892) Sugiyamaella lignohabitans 30035747 AWJ20_3699 rRNA AWJ20_3699 NC_031674.1 4925070 4928572 R 28S ribosomal RNA complement(4925070..4928572) Sugiyamaella lignohabitans 30035748 AWJ20_3700 rRNA AWJ20_3700 NC_031674.1 4928713 4930511 R 18S ribosomal RNA complement(4928713..4930511) Sugiyamaella lignohabitans 30035751 AWJ20_3701 rRNA AWJ20_3701 NC_031674.1 4933688 4937189 R 28S ribosomal RNA complement(4933688..4937189) Sugiyamaella lignohabitans 30035752 AWJ20_3702 rRNA AWJ20_3702 NC_031674.1 4937330 4939128 R 18S ribosomal RNA complement(4937330..4939128) Sugiyamaella lignohabitans 30035753 AWJ20_3703 rRNA AWJ20_3703 NC_031674.1 4942305 4945807 R 28S ribosomal RNA complement(4942305..4945807) Sugiyamaella lignohabitans 30035754 AWJ20_3704 rRNA AWJ20_3704 NC_031674.1 4945948 4947747 R 18S ribosomal RNA complement(4945948..4947747) Sugiyamaella lignohabitans 30035755 AWJ20_3705 rRNA AWJ20_3705 NC_031674.1 4950923 4954424 R 28S ribosomal RNA complement(4950923..4954424) Sugiyamaella lignohabitans 30035756 AWJ20_3706 rRNA AWJ20_3706 NC_031674.1 4954565 4956216 R 18S ribosomal RNA complement(4954565..4956216) Sugiyamaella lignohabitans 30035757 AWJ20_4791 rRNA AWJ20_4791 NC_031673.1 558555 558671 R 8S ribosomal RNA complement(558555..558671) Sugiyamaella lignohabitans 30036961